Multiple sequence alignment - TraesCS3B01G325300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G325300 chr3B 100.000 2198 0 0 1 2198 526178615 526180812 0.000000e+00 4060.0
1 TraesCS3B01G325300 chr3D 95.493 1176 34 12 385 1550 400499363 400500529 0.000000e+00 1860.0
2 TraesCS3B01G325300 chr3D 89.443 682 46 13 1539 2198 400500553 400501230 0.000000e+00 837.0
3 TraesCS3B01G325300 chr3A 93.866 538 20 7 754 1279 519390811 519391347 0.000000e+00 798.0
4 TraesCS3B01G325300 chr3A 93.659 205 11 2 1247 1449 519391347 519391551 2.740000e-79 305.0
5 TraesCS3B01G325300 chr3A 95.385 130 6 0 1539 1668 519391651 519391780 7.950000e-50 207.0
6 TraesCS3B01G325300 chr3A 96.154 52 2 0 1480 1531 519391551 519391602 3.890000e-13 86.1
7 TraesCS3B01G325300 chr3A 80.000 95 16 3 352 445 547356696 547356788 1.410000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G325300 chr3B 526178615 526180812 2197 False 4060.000 4060 100.000 1 2198 1 chr3B.!!$F1 2197
1 TraesCS3B01G325300 chr3D 400499363 400501230 1867 False 1348.500 1860 92.468 385 2198 2 chr3D.!!$F1 1813
2 TraesCS3B01G325300 chr3A 519390811 519391780 969 False 349.025 798 94.766 754 1668 4 chr3A.!!$F2 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.035056 AGCCGTCCAGGATCAAAAGG 60.035 55.0 0.0 0.0 45.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1647 1.065854 CGAGGAGCTTCCATTTGGAGT 60.066 52.381 0.0 0.0 46.36 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.819564 TGTCTCAAATGCTATAGCCGT 57.180 42.857 21.84 8.04 41.18 5.68
22 23 3.717707 TGTCTCAAATGCTATAGCCGTC 58.282 45.455 21.84 4.90 41.18 4.79
23 24 3.060602 GTCTCAAATGCTATAGCCGTCC 58.939 50.000 21.84 0.00 41.18 4.79
24 25 2.698274 TCTCAAATGCTATAGCCGTCCA 59.302 45.455 21.84 3.07 41.18 4.02
25 26 3.062763 CTCAAATGCTATAGCCGTCCAG 58.937 50.000 21.84 8.69 41.18 3.86
26 27 2.146342 CAAATGCTATAGCCGTCCAGG 58.854 52.381 21.84 1.81 44.97 4.45
27 28 1.717032 AATGCTATAGCCGTCCAGGA 58.283 50.000 21.84 0.74 45.00 3.86
28 29 1.944177 ATGCTATAGCCGTCCAGGAT 58.056 50.000 21.84 3.27 45.00 3.24
29 30 1.257743 TGCTATAGCCGTCCAGGATC 58.742 55.000 21.84 0.00 45.00 3.36
30 31 1.257743 GCTATAGCCGTCCAGGATCA 58.742 55.000 14.13 0.00 45.00 2.92
31 32 1.618837 GCTATAGCCGTCCAGGATCAA 59.381 52.381 14.13 0.00 45.00 2.57
32 33 2.037251 GCTATAGCCGTCCAGGATCAAA 59.963 50.000 14.13 0.00 45.00 2.69
33 34 3.494398 GCTATAGCCGTCCAGGATCAAAA 60.494 47.826 14.13 0.00 45.00 2.44
34 35 2.691409 TAGCCGTCCAGGATCAAAAG 57.309 50.000 0.00 0.00 45.00 2.27
35 36 0.035056 AGCCGTCCAGGATCAAAAGG 60.035 55.000 0.00 0.00 45.00 3.11
36 37 0.035439 GCCGTCCAGGATCAAAAGGA 60.035 55.000 0.00 0.00 45.00 3.36
37 38 1.739067 CCGTCCAGGATCAAAAGGAC 58.261 55.000 12.47 12.47 45.46 3.85
38 39 1.679032 CCGTCCAGGATCAAAAGGACC 60.679 57.143 15.21 0.00 46.02 4.46
39 40 1.739067 GTCCAGGATCAAAAGGACCG 58.261 55.000 11.77 0.00 43.67 4.79
40 41 1.003233 GTCCAGGATCAAAAGGACCGT 59.997 52.381 11.77 0.00 43.67 4.83
41 42 1.003118 TCCAGGATCAAAAGGACCGTG 59.997 52.381 0.00 0.00 0.00 4.94
42 43 1.003118 CCAGGATCAAAAGGACCGTGA 59.997 52.381 0.00 0.00 0.00 4.35
43 44 2.350522 CAGGATCAAAAGGACCGTGAG 58.649 52.381 0.00 0.00 0.00 3.51
44 45 1.087501 GGATCAAAAGGACCGTGAGC 58.912 55.000 0.00 3.37 0.00 4.26
45 46 1.087501 GATCAAAAGGACCGTGAGCC 58.912 55.000 1.05 0.00 0.00 4.70
46 47 0.400213 ATCAAAAGGACCGTGAGCCA 59.600 50.000 2.64 0.00 0.00 4.75
47 48 0.181587 TCAAAAGGACCGTGAGCCAA 59.818 50.000 0.00 0.00 0.00 4.52
48 49 1.202879 TCAAAAGGACCGTGAGCCAAT 60.203 47.619 0.00 0.00 0.00 3.16
49 50 1.613437 CAAAAGGACCGTGAGCCAATT 59.387 47.619 0.00 0.00 0.00 2.32
50 51 1.995376 AAAGGACCGTGAGCCAATTT 58.005 45.000 0.00 0.00 0.00 1.82
51 52 1.995376 AAGGACCGTGAGCCAATTTT 58.005 45.000 0.00 0.00 0.00 1.82
52 53 1.534729 AGGACCGTGAGCCAATTTTC 58.465 50.000 0.00 0.00 0.00 2.29
53 54 1.073923 AGGACCGTGAGCCAATTTTCT 59.926 47.619 0.00 0.00 0.00 2.52
54 55 1.200020 GGACCGTGAGCCAATTTTCTG 59.800 52.381 0.00 0.00 0.00 3.02
55 56 1.200020 GACCGTGAGCCAATTTTCTGG 59.800 52.381 0.00 0.00 39.71 3.86
56 57 1.202879 ACCGTGAGCCAATTTTCTGGA 60.203 47.619 0.00 0.00 38.96 3.86
57 58 1.885887 CCGTGAGCCAATTTTCTGGAA 59.114 47.619 0.00 0.00 38.96 3.53
58 59 2.351738 CCGTGAGCCAATTTTCTGGAAC 60.352 50.000 0.00 0.00 38.96 3.62
59 60 2.351738 CGTGAGCCAATTTTCTGGAACC 60.352 50.000 0.00 0.00 38.96 3.62
60 61 2.627699 GTGAGCCAATTTTCTGGAACCA 59.372 45.455 0.00 0.00 38.96 3.67
61 62 3.069443 GTGAGCCAATTTTCTGGAACCAA 59.931 43.478 0.00 0.00 38.96 3.67
62 63 3.321682 TGAGCCAATTTTCTGGAACCAAG 59.678 43.478 0.00 0.00 38.96 3.61
63 64 2.634453 AGCCAATTTTCTGGAACCAAGG 59.366 45.455 0.00 0.00 38.96 3.61
64 65 2.632512 GCCAATTTTCTGGAACCAAGGA 59.367 45.455 0.00 0.00 38.96 3.36
65 66 3.070878 GCCAATTTTCTGGAACCAAGGAA 59.929 43.478 0.00 0.00 38.96 3.36
66 67 4.800582 GCCAATTTTCTGGAACCAAGGAAG 60.801 45.833 0.00 0.00 38.96 3.46
67 68 4.262592 CCAATTTTCTGGAACCAAGGAAGG 60.263 45.833 0.00 0.00 38.96 3.46
68 69 1.995376 TTTCTGGAACCAAGGAAGGC 58.005 50.000 0.00 0.00 0.00 4.35
69 70 1.149101 TTCTGGAACCAAGGAAGGCT 58.851 50.000 0.00 0.00 0.00 4.58
70 71 0.401738 TCTGGAACCAAGGAAGGCTG 59.598 55.000 0.00 0.00 0.00 4.85
71 72 0.111253 CTGGAACCAAGGAAGGCTGT 59.889 55.000 0.00 0.00 0.00 4.40
72 73 1.351017 CTGGAACCAAGGAAGGCTGTA 59.649 52.381 0.00 0.00 0.00 2.74
73 74 1.351017 TGGAACCAAGGAAGGCTGTAG 59.649 52.381 0.00 0.00 0.00 2.74
74 75 1.628846 GGAACCAAGGAAGGCTGTAGA 59.371 52.381 0.00 0.00 0.00 2.59
75 76 2.239907 GGAACCAAGGAAGGCTGTAGAT 59.760 50.000 0.00 0.00 0.00 1.98
76 77 3.308473 GGAACCAAGGAAGGCTGTAGATT 60.308 47.826 0.00 0.00 0.00 2.40
77 78 4.336280 GAACCAAGGAAGGCTGTAGATTT 58.664 43.478 0.00 0.00 0.00 2.17
78 79 5.497474 GAACCAAGGAAGGCTGTAGATTTA 58.503 41.667 0.00 0.00 0.00 1.40
79 80 5.514500 ACCAAGGAAGGCTGTAGATTTAA 57.486 39.130 0.00 0.00 0.00 1.52
80 81 5.887754 ACCAAGGAAGGCTGTAGATTTAAA 58.112 37.500 0.00 0.00 0.00 1.52
81 82 6.311735 ACCAAGGAAGGCTGTAGATTTAAAA 58.688 36.000 0.00 0.00 0.00 1.52
82 83 6.780522 ACCAAGGAAGGCTGTAGATTTAAAAA 59.219 34.615 0.00 0.00 0.00 1.94
106 107 5.337578 AAAATCCCGTTGAAACATATGGG 57.662 39.130 7.80 0.00 38.02 4.00
107 108 1.757682 TCCCGTTGAAACATATGGGC 58.242 50.000 7.80 0.00 36.56 5.36
108 109 0.744281 CCCGTTGAAACATATGGGCC 59.256 55.000 7.80 0.00 0.00 5.80
109 110 1.468985 CCGTTGAAACATATGGGCCA 58.531 50.000 9.61 9.61 0.00 5.36
110 111 2.031120 CCGTTGAAACATATGGGCCAT 58.969 47.619 24.69 24.69 0.00 4.40
111 112 2.430332 CCGTTGAAACATATGGGCCATT 59.570 45.455 26.58 6.69 0.00 3.16
112 113 3.118811 CCGTTGAAACATATGGGCCATTT 60.119 43.478 26.58 14.80 0.00 2.32
113 114 4.111916 CGTTGAAACATATGGGCCATTTC 58.888 43.478 26.58 21.96 0.00 2.17
114 115 4.142182 CGTTGAAACATATGGGCCATTTCT 60.142 41.667 26.58 7.24 31.86 2.52
115 116 5.067153 CGTTGAAACATATGGGCCATTTCTA 59.933 40.000 26.58 16.27 31.86 2.10
116 117 6.507023 GTTGAAACATATGGGCCATTTCTAG 58.493 40.000 26.58 12.43 31.86 2.43
117 118 5.139727 TGAAACATATGGGCCATTTCTAGG 58.860 41.667 26.58 10.91 31.86 3.02
118 119 5.103728 TGAAACATATGGGCCATTTCTAGGA 60.104 40.000 26.58 4.59 31.86 2.94
119 120 5.605540 AACATATGGGCCATTTCTAGGAT 57.394 39.130 26.58 7.14 0.00 3.24
120 121 5.184892 ACATATGGGCCATTTCTAGGATC 57.815 43.478 26.58 0.00 0.00 3.36
121 122 4.854436 ACATATGGGCCATTTCTAGGATCT 59.146 41.667 26.58 0.00 0.00 2.75
122 123 5.045286 ACATATGGGCCATTTCTAGGATCTC 60.045 44.000 26.58 0.00 0.00 2.75
123 124 2.775418 TGGGCCATTTCTAGGATCTCA 58.225 47.619 0.00 0.00 0.00 3.27
124 125 3.122480 TGGGCCATTTCTAGGATCTCAA 58.878 45.455 0.00 0.00 0.00 3.02
125 126 3.527253 TGGGCCATTTCTAGGATCTCAAA 59.473 43.478 0.00 0.00 0.00 2.69
126 127 4.168675 TGGGCCATTTCTAGGATCTCAAAT 59.831 41.667 0.00 0.00 0.00 2.32
127 128 5.372363 TGGGCCATTTCTAGGATCTCAAATA 59.628 40.000 0.00 0.00 0.00 1.40
128 129 5.707764 GGGCCATTTCTAGGATCTCAAATAC 59.292 44.000 4.39 0.00 0.00 1.89
129 130 6.466470 GGGCCATTTCTAGGATCTCAAATACT 60.466 42.308 4.39 0.00 0.00 2.12
130 131 7.256691 GGGCCATTTCTAGGATCTCAAATACTA 60.257 40.741 4.39 0.00 0.00 1.82
131 132 7.604545 GGCCATTTCTAGGATCTCAAATACTAC 59.395 40.741 0.00 0.00 0.00 2.73
132 133 7.604545 GCCATTTCTAGGATCTCAAATACTACC 59.395 40.741 0.00 0.00 0.00 3.18
133 134 8.651389 CCATTTCTAGGATCTCAAATACTACCA 58.349 37.037 0.00 0.00 0.00 3.25
136 137 7.689446 TCTAGGATCTCAAATACTACCATCG 57.311 40.000 0.00 0.00 0.00 3.84
137 138 5.140747 AGGATCTCAAATACTACCATCGC 57.859 43.478 0.00 0.00 0.00 4.58
138 139 4.021016 AGGATCTCAAATACTACCATCGCC 60.021 45.833 0.00 0.00 0.00 5.54
139 140 3.746045 TCTCAAATACTACCATCGCCC 57.254 47.619 0.00 0.00 0.00 6.13
140 141 2.035449 TCTCAAATACTACCATCGCCCG 59.965 50.000 0.00 0.00 0.00 6.13
141 142 1.069513 TCAAATACTACCATCGCCCGG 59.930 52.381 0.00 0.00 0.00 5.73
142 143 0.395312 AAATACTACCATCGCCCGGG 59.605 55.000 19.09 19.09 0.00 5.73
143 144 0.470456 AATACTACCATCGCCCGGGA 60.470 55.000 29.31 3.75 0.00 5.14
144 145 0.252103 ATACTACCATCGCCCGGGAT 60.252 55.000 29.31 6.81 0.00 3.85
145 146 0.470456 TACTACCATCGCCCGGGATT 60.470 55.000 29.31 4.12 0.00 3.01
146 147 0.470456 ACTACCATCGCCCGGGATTA 60.470 55.000 29.31 8.81 0.00 1.75
147 148 0.682852 CTACCATCGCCCGGGATTAA 59.317 55.000 29.31 5.72 0.00 1.40
148 149 1.071071 CTACCATCGCCCGGGATTAAA 59.929 52.381 29.31 3.54 0.00 1.52
149 150 0.256464 ACCATCGCCCGGGATTAAAA 59.744 50.000 29.31 1.41 0.00 1.52
150 151 1.341187 ACCATCGCCCGGGATTAAAAA 60.341 47.619 29.31 0.00 0.00 1.94
151 152 1.336755 CCATCGCCCGGGATTAAAAAG 59.663 52.381 29.31 4.35 0.00 2.27
152 153 1.029681 ATCGCCCGGGATTAAAAAGC 58.970 50.000 29.31 3.62 0.00 3.51
153 154 1.033202 TCGCCCGGGATTAAAAAGCC 61.033 55.000 29.31 0.00 35.82 4.35
161 162 1.405463 GGATTAAAAAGCCCCTGAGCG 59.595 52.381 0.00 0.00 38.01 5.03
162 163 2.365582 GATTAAAAAGCCCCTGAGCGA 58.634 47.619 0.00 0.00 38.01 4.93
163 164 2.279935 TTAAAAAGCCCCTGAGCGAA 57.720 45.000 0.00 0.00 38.01 4.70
164 165 2.507407 TAAAAAGCCCCTGAGCGAAT 57.493 45.000 0.00 0.00 38.01 3.34
165 166 1.632589 AAAAAGCCCCTGAGCGAATT 58.367 45.000 0.00 0.00 38.01 2.17
166 167 1.177401 AAAAGCCCCTGAGCGAATTC 58.823 50.000 0.00 0.00 38.01 2.17
167 168 0.329596 AAAGCCCCTGAGCGAATTCT 59.670 50.000 3.52 0.00 38.01 2.40
168 169 0.107459 AAGCCCCTGAGCGAATTCTC 60.107 55.000 3.52 0.00 38.01 2.87
169 170 0.980231 AGCCCCTGAGCGAATTCTCT 60.980 55.000 3.52 0.00 38.01 3.10
170 171 0.813210 GCCCCTGAGCGAATTCTCTG 60.813 60.000 1.90 0.00 34.29 3.35
171 172 0.813210 CCCCTGAGCGAATTCTCTGC 60.813 60.000 1.90 0.00 34.29 4.26
172 173 0.107993 CCCTGAGCGAATTCTCTGCA 60.108 55.000 1.90 0.74 34.29 4.41
173 174 1.676916 CCCTGAGCGAATTCTCTGCAA 60.677 52.381 1.90 0.00 34.29 4.08
174 175 1.396301 CCTGAGCGAATTCTCTGCAAC 59.604 52.381 1.90 0.00 34.29 4.17
175 176 1.396301 CTGAGCGAATTCTCTGCAACC 59.604 52.381 1.90 0.00 34.29 3.77
176 177 1.270785 TGAGCGAATTCTCTGCAACCA 60.271 47.619 1.90 0.00 34.29 3.67
177 178 1.806542 GAGCGAATTCTCTGCAACCAA 59.193 47.619 1.90 0.00 0.00 3.67
178 179 1.808945 AGCGAATTCTCTGCAACCAAG 59.191 47.619 3.52 0.00 0.00 3.61
179 180 1.135575 GCGAATTCTCTGCAACCAAGG 60.136 52.381 3.52 0.00 0.00 3.61
180 181 2.426522 CGAATTCTCTGCAACCAAGGA 58.573 47.619 3.52 0.00 0.00 3.36
181 182 2.813754 CGAATTCTCTGCAACCAAGGAA 59.186 45.455 3.52 0.00 0.00 3.36
182 183 3.365364 CGAATTCTCTGCAACCAAGGAAC 60.365 47.826 3.52 0.00 0.00 3.62
183 184 2.727123 TTCTCTGCAACCAAGGAACA 57.273 45.000 0.00 0.00 0.00 3.18
184 185 2.727123 TCTCTGCAACCAAGGAACAA 57.273 45.000 0.00 0.00 0.00 2.83
185 186 3.228188 TCTCTGCAACCAAGGAACAAT 57.772 42.857 0.00 0.00 0.00 2.71
186 187 2.886523 TCTCTGCAACCAAGGAACAATG 59.113 45.455 0.00 0.00 0.00 2.82
187 188 1.340889 TCTGCAACCAAGGAACAATGC 59.659 47.619 0.00 0.00 0.00 3.56
188 189 1.068895 CTGCAACCAAGGAACAATGCA 59.931 47.619 0.00 0.00 41.08 3.96
189 190 1.068895 TGCAACCAAGGAACAATGCAG 59.931 47.619 0.00 0.00 38.73 4.41
190 191 1.787012 CAACCAAGGAACAATGCAGC 58.213 50.000 0.00 0.00 0.00 5.25
191 192 1.342174 CAACCAAGGAACAATGCAGCT 59.658 47.619 0.00 0.00 0.00 4.24
192 193 1.708341 ACCAAGGAACAATGCAGCTT 58.292 45.000 0.00 0.00 0.00 3.74
193 194 2.041701 ACCAAGGAACAATGCAGCTTT 58.958 42.857 0.00 0.00 0.00 3.51
194 195 2.435437 ACCAAGGAACAATGCAGCTTTT 59.565 40.909 0.00 0.00 0.00 2.27
195 196 3.640967 ACCAAGGAACAATGCAGCTTTTA 59.359 39.130 0.00 0.00 0.00 1.52
196 197 4.100808 ACCAAGGAACAATGCAGCTTTTAA 59.899 37.500 0.00 0.00 0.00 1.52
197 198 5.221702 ACCAAGGAACAATGCAGCTTTTAAT 60.222 36.000 0.00 0.00 0.00 1.40
198 199 6.014669 ACCAAGGAACAATGCAGCTTTTAATA 60.015 34.615 0.00 0.00 0.00 0.98
199 200 6.532657 CCAAGGAACAATGCAGCTTTTAATAG 59.467 38.462 0.00 0.00 0.00 1.73
200 201 7.315142 CAAGGAACAATGCAGCTTTTAATAGA 58.685 34.615 0.00 0.00 0.00 1.98
201 202 7.466746 AGGAACAATGCAGCTTTTAATAGAA 57.533 32.000 0.00 0.00 0.00 2.10
202 203 8.071177 AGGAACAATGCAGCTTTTAATAGAAT 57.929 30.769 0.00 0.00 0.00 2.40
203 204 8.534496 AGGAACAATGCAGCTTTTAATAGAATT 58.466 29.630 0.00 0.00 0.00 2.17
204 205 9.154847 GGAACAATGCAGCTTTTAATAGAATTT 57.845 29.630 0.00 0.00 0.00 1.82
211 212 9.816354 TGCAGCTTTTAATAGAATTTTTATCCC 57.184 29.630 0.00 0.00 0.00 3.85
212 213 8.968242 GCAGCTTTTAATAGAATTTTTATCCCG 58.032 33.333 0.00 0.00 0.00 5.14
213 214 8.968242 CAGCTTTTAATAGAATTTTTATCCCGC 58.032 33.333 0.00 0.00 0.00 6.13
214 215 8.914011 AGCTTTTAATAGAATTTTTATCCCGCT 58.086 29.630 0.00 0.00 0.00 5.52
215 216 8.968242 GCTTTTAATAGAATTTTTATCCCGCTG 58.032 33.333 0.00 0.00 0.00 5.18
216 217 8.865590 TTTTAATAGAATTTTTATCCCGCTGC 57.134 30.769 0.00 0.00 0.00 5.25
217 218 7.575414 TTAATAGAATTTTTATCCCGCTGCA 57.425 32.000 0.00 0.00 0.00 4.41
218 219 6.463995 AATAGAATTTTTATCCCGCTGCAA 57.536 33.333 0.00 0.00 0.00 4.08
219 220 4.110036 AGAATTTTTATCCCGCTGCAAC 57.890 40.909 0.00 0.00 0.00 4.17
220 221 2.559998 ATTTTTATCCCGCTGCAACG 57.440 45.000 1.65 1.65 0.00 4.10
221 222 0.109504 TTTTTATCCCGCTGCAACGC 60.110 50.000 3.43 0.00 0.00 4.84
222 223 1.237954 TTTTATCCCGCTGCAACGCA 61.238 50.000 3.43 0.00 36.92 5.24
223 224 1.029408 TTTATCCCGCTGCAACGCAT 61.029 50.000 3.43 0.79 38.13 4.73
224 225 1.713937 TTATCCCGCTGCAACGCATG 61.714 55.000 3.43 0.00 38.13 4.06
230 231 3.454573 CTGCAACGCATGGGCCAT 61.455 61.111 14.78 14.78 38.13 4.40
231 232 2.996153 TGCAACGCATGGGCCATT 60.996 55.556 18.46 0.00 36.38 3.16
232 233 2.265424 GCAACGCATGGGCCATTT 59.735 55.556 18.46 6.15 36.38 2.32
233 234 1.375780 GCAACGCATGGGCCATTTT 60.376 52.632 18.46 7.64 36.38 1.82
234 235 0.954938 GCAACGCATGGGCCATTTTT 60.955 50.000 18.46 7.25 36.38 1.94
235 236 1.077915 CAACGCATGGGCCATTTTTC 58.922 50.000 18.46 5.55 36.38 2.29
236 237 0.975887 AACGCATGGGCCATTTTTCT 59.024 45.000 18.46 0.00 36.38 2.52
237 238 1.846007 ACGCATGGGCCATTTTTCTA 58.154 45.000 18.46 0.00 36.38 2.10
238 239 1.750778 ACGCATGGGCCATTTTTCTAG 59.249 47.619 18.46 4.69 36.38 2.43
239 240 1.750778 CGCATGGGCCATTTTTCTAGT 59.249 47.619 18.46 0.00 36.38 2.57
240 241 2.223572 CGCATGGGCCATTTTTCTAGTC 60.224 50.000 18.46 0.00 36.38 2.59
241 242 3.026694 GCATGGGCCATTTTTCTAGTCT 58.973 45.455 18.46 0.00 0.00 3.24
242 243 3.448660 GCATGGGCCATTTTTCTAGTCTT 59.551 43.478 18.46 0.00 0.00 3.01
243 244 4.440663 GCATGGGCCATTTTTCTAGTCTTC 60.441 45.833 18.46 0.00 0.00 2.87
244 245 4.380843 TGGGCCATTTTTCTAGTCTTCA 57.619 40.909 0.00 0.00 0.00 3.02
245 246 4.735369 TGGGCCATTTTTCTAGTCTTCAA 58.265 39.130 0.00 0.00 0.00 2.69
246 247 5.332743 TGGGCCATTTTTCTAGTCTTCAAT 58.667 37.500 0.00 0.00 0.00 2.57
247 248 5.779771 TGGGCCATTTTTCTAGTCTTCAATT 59.220 36.000 0.00 0.00 0.00 2.32
248 249 6.071391 TGGGCCATTTTTCTAGTCTTCAATTC 60.071 38.462 0.00 0.00 0.00 2.17
249 250 6.030228 GGCCATTTTTCTAGTCTTCAATTCG 58.970 40.000 0.00 0.00 0.00 3.34
250 251 6.128007 GGCCATTTTTCTAGTCTTCAATTCGA 60.128 38.462 0.00 0.00 0.00 3.71
251 252 6.743172 GCCATTTTTCTAGTCTTCAATTCGAC 59.257 38.462 0.00 0.00 0.00 4.20
252 253 6.955963 CCATTTTTCTAGTCTTCAATTCGACG 59.044 38.462 0.00 0.00 35.38 5.12
253 254 7.148639 CCATTTTTCTAGTCTTCAATTCGACGA 60.149 37.037 0.00 0.00 35.38 4.20
254 255 6.686130 TTTTCTAGTCTTCAATTCGACGAC 57.314 37.500 0.00 6.48 41.95 4.34
255 256 3.999769 TCTAGTCTTCAATTCGACGACG 58.000 45.455 0.00 0.00 45.28 5.12
256 257 2.983402 AGTCTTCAATTCGACGACGA 57.017 45.000 5.75 5.75 45.28 4.20
257 258 3.489180 AGTCTTCAATTCGACGACGAT 57.511 42.857 11.32 0.00 45.28 3.73
258 259 3.172050 AGTCTTCAATTCGACGACGATG 58.828 45.455 11.32 7.66 45.28 3.84
259 260 4.513162 AGTCTTCAATTCGACGACGATGC 61.513 47.826 11.32 0.00 45.28 3.91
260 261 6.905254 AGTCTTCAATTCGACGACGATGCA 62.905 45.833 11.32 0.00 45.28 3.96
261 262 8.805451 TAGTCTTCAATTCGACGACGATGCAT 62.805 42.308 11.32 0.00 45.28 3.96
264 265 4.086860 TCGACGACGATGCATTGG 57.913 55.556 18.31 7.94 43.81 3.16
265 266 1.214325 TCGACGACGATGCATTGGT 59.786 52.632 18.31 11.18 43.81 3.67
266 267 0.389296 TCGACGACGATGCATTGGTT 60.389 50.000 18.31 1.52 43.81 3.67
267 268 0.247262 CGACGACGATGCATTGGTTG 60.247 55.000 18.31 16.02 42.66 3.77
268 269 1.075542 GACGACGATGCATTGGTTGA 58.924 50.000 18.31 0.00 0.00 3.18
269 270 1.665679 GACGACGATGCATTGGTTGAT 59.334 47.619 18.31 6.43 0.00 2.57
270 271 2.083774 ACGACGATGCATTGGTTGATT 58.916 42.857 18.31 0.00 0.00 2.57
271 272 2.487762 ACGACGATGCATTGGTTGATTT 59.512 40.909 18.31 0.00 0.00 2.17
272 273 2.847717 CGACGATGCATTGGTTGATTTG 59.152 45.455 18.31 0.00 0.00 2.32
273 274 3.181397 GACGATGCATTGGTTGATTTGG 58.819 45.455 18.31 0.00 0.00 3.28
274 275 2.562298 ACGATGCATTGGTTGATTTGGT 59.438 40.909 18.31 0.00 0.00 3.67
275 276 3.761218 ACGATGCATTGGTTGATTTGGTA 59.239 39.130 18.31 0.00 0.00 3.25
276 277 4.402155 ACGATGCATTGGTTGATTTGGTAT 59.598 37.500 18.31 0.00 0.00 2.73
277 278 5.105392 ACGATGCATTGGTTGATTTGGTATT 60.105 36.000 18.31 0.00 0.00 1.89
278 279 5.232626 CGATGCATTGGTTGATTTGGTATTG 59.767 40.000 5.98 0.00 0.00 1.90
279 280 4.252073 TGCATTGGTTGATTTGGTATTGC 58.748 39.130 0.00 0.00 0.00 3.56
280 281 4.252073 GCATTGGTTGATTTGGTATTGCA 58.748 39.130 0.00 0.00 0.00 4.08
281 282 4.694509 GCATTGGTTGATTTGGTATTGCAA 59.305 37.500 0.00 0.00 0.00 4.08
282 283 5.390779 GCATTGGTTGATTTGGTATTGCAAC 60.391 40.000 0.00 0.00 38.40 4.17
283 284 5.543507 TTGGTTGATTTGGTATTGCAACT 57.456 34.783 0.00 0.00 38.95 3.16
284 285 5.132897 TGGTTGATTTGGTATTGCAACTC 57.867 39.130 0.00 0.00 38.95 3.01
285 286 4.586421 TGGTTGATTTGGTATTGCAACTCA 59.414 37.500 0.00 0.00 38.95 3.41
286 287 5.069648 TGGTTGATTTGGTATTGCAACTCAA 59.930 36.000 0.00 3.99 38.95 3.02
287 288 6.165577 GGTTGATTTGGTATTGCAACTCAAT 58.834 36.000 0.00 0.00 46.48 2.57
288 289 6.650390 GGTTGATTTGGTATTGCAACTCAATT 59.350 34.615 0.00 3.54 42.48 2.32
289 290 7.148590 GGTTGATTTGGTATTGCAACTCAATTC 60.149 37.037 0.00 12.30 42.48 2.17
290 291 6.990798 TGATTTGGTATTGCAACTCAATTCA 58.009 32.000 19.98 19.98 42.48 2.57
291 292 7.440198 TGATTTGGTATTGCAACTCAATTCAA 58.560 30.769 20.77 10.70 42.48 2.69
292 293 8.095792 TGATTTGGTATTGCAACTCAATTCAAT 58.904 29.630 20.77 10.48 42.48 2.57
293 294 8.851541 ATTTGGTATTGCAACTCAATTCAATT 57.148 26.923 0.00 0.00 42.48 2.32
294 295 8.674263 TTTGGTATTGCAACTCAATTCAATTT 57.326 26.923 0.00 0.00 42.48 1.82
295 296 7.887996 TGGTATTGCAACTCAATTCAATTTC 57.112 32.000 0.00 0.00 42.48 2.17
296 297 7.669427 TGGTATTGCAACTCAATTCAATTTCT 58.331 30.769 0.00 0.00 42.48 2.52
297 298 8.149647 TGGTATTGCAACTCAATTCAATTTCTT 58.850 29.630 0.00 0.00 42.48 2.52
298 299 8.437742 GGTATTGCAACTCAATTCAATTTCTTG 58.562 33.333 0.00 0.00 42.48 3.02
299 300 6.847956 TTGCAACTCAATTCAATTTCTTGG 57.152 33.333 0.00 0.00 32.95 3.61
300 301 5.916318 TGCAACTCAATTCAATTTCTTGGT 58.084 33.333 0.00 0.00 32.95 3.67
301 302 6.347696 TGCAACTCAATTCAATTTCTTGGTT 58.652 32.000 0.00 0.00 32.95 3.67
302 303 6.258287 TGCAACTCAATTCAATTTCTTGGTTG 59.742 34.615 0.00 0.00 35.94 3.77
303 304 6.479660 GCAACTCAATTCAATTTCTTGGTTGA 59.520 34.615 17.92 6.85 35.46 3.18
304 305 7.011295 GCAACTCAATTCAATTTCTTGGTTGAA 59.989 33.333 17.92 3.39 45.27 2.69
318 319 9.906660 TTTCTTGGTTGAATACATACATCAAAC 57.093 29.630 0.00 0.00 40.38 2.93
319 320 8.628630 TCTTGGTTGAATACATACATCAAACA 57.371 30.769 1.61 1.61 46.03 2.83
320 321 8.511321 TCTTGGTTGAATACATACATCAAACAC 58.489 33.333 5.07 0.00 46.99 3.32
321 322 7.751768 TGGTTGAATACATACATCAAACACA 57.248 32.000 1.61 0.00 43.68 3.72
322 323 7.815641 TGGTTGAATACATACATCAAACACAG 58.184 34.615 1.61 0.00 43.68 3.66
323 324 6.747280 GGTTGAATACATACATCAAACACAGC 59.253 38.462 0.00 0.00 39.86 4.40
324 325 7.362056 GGTTGAATACATACATCAAACACAGCT 60.362 37.037 0.00 0.00 39.86 4.24
325 326 7.307493 TGAATACATACATCAAACACAGCTC 57.693 36.000 0.00 0.00 0.00 4.09
326 327 6.878389 TGAATACATACATCAAACACAGCTCA 59.122 34.615 0.00 0.00 0.00 4.26
327 328 7.390162 TGAATACATACATCAAACACAGCTCAA 59.610 33.333 0.00 0.00 0.00 3.02
328 329 7.870509 ATACATACATCAAACACAGCTCAAT 57.129 32.000 0.00 0.00 0.00 2.57
329 330 5.946298 ACATACATCAAACACAGCTCAATG 58.054 37.500 0.00 0.00 0.00 2.82
330 331 5.474532 ACATACATCAAACACAGCTCAATGT 59.525 36.000 0.00 0.00 0.00 2.71
331 332 4.924305 ACATCAAACACAGCTCAATGTT 57.076 36.364 2.38 2.38 40.76 2.71
335 336 2.514205 AACACAGCTCAATGTTTGCC 57.486 45.000 2.38 0.00 35.51 4.52
336 337 0.675633 ACACAGCTCAATGTTTGCCC 59.324 50.000 0.00 0.00 0.00 5.36
337 338 0.037975 CACAGCTCAATGTTTGCCCC 60.038 55.000 0.00 0.00 0.00 5.80
338 339 0.469705 ACAGCTCAATGTTTGCCCCA 60.470 50.000 0.00 0.00 0.00 4.96
339 340 0.037975 CAGCTCAATGTTTGCCCCAC 60.038 55.000 0.00 0.00 0.00 4.61
340 341 0.178953 AGCTCAATGTTTGCCCCACT 60.179 50.000 0.00 0.00 0.00 4.00
341 342 1.075374 AGCTCAATGTTTGCCCCACTA 59.925 47.619 0.00 0.00 0.00 2.74
342 343 1.202348 GCTCAATGTTTGCCCCACTAC 59.798 52.381 0.00 0.00 0.00 2.73
343 344 1.468520 CTCAATGTTTGCCCCACTACG 59.531 52.381 0.00 0.00 0.00 3.51
344 345 1.072489 TCAATGTTTGCCCCACTACGA 59.928 47.619 0.00 0.00 0.00 3.43
345 346 1.199097 CAATGTTTGCCCCACTACGAC 59.801 52.381 0.00 0.00 0.00 4.34
346 347 0.398696 ATGTTTGCCCCACTACGACA 59.601 50.000 0.00 0.00 0.00 4.35
347 348 0.180642 TGTTTGCCCCACTACGACAA 59.819 50.000 0.00 0.00 0.00 3.18
348 349 0.872388 GTTTGCCCCACTACGACAAG 59.128 55.000 0.00 0.00 0.00 3.16
349 350 0.759959 TTTGCCCCACTACGACAAGA 59.240 50.000 0.00 0.00 0.00 3.02
350 351 0.759959 TTGCCCCACTACGACAAGAA 59.240 50.000 0.00 0.00 0.00 2.52
351 352 0.759959 TGCCCCACTACGACAAGAAA 59.240 50.000 0.00 0.00 0.00 2.52
352 353 1.270625 TGCCCCACTACGACAAGAAAG 60.271 52.381 0.00 0.00 0.00 2.62
353 354 1.001633 GCCCCACTACGACAAGAAAGA 59.998 52.381 0.00 0.00 0.00 2.52
354 355 2.931320 GCCCCACTACGACAAGAAAGAG 60.931 54.545 0.00 0.00 0.00 2.85
355 356 2.353803 CCCCACTACGACAAGAAAGAGG 60.354 54.545 0.00 0.00 0.00 3.69
356 357 2.299297 CCCACTACGACAAGAAAGAGGT 59.701 50.000 0.00 0.00 0.00 3.85
357 358 3.318017 CCACTACGACAAGAAAGAGGTG 58.682 50.000 0.00 0.00 0.00 4.00
358 359 3.005472 CCACTACGACAAGAAAGAGGTGA 59.995 47.826 0.00 0.00 0.00 4.02
359 360 4.322049 CCACTACGACAAGAAAGAGGTGAT 60.322 45.833 0.00 0.00 0.00 3.06
360 361 4.623167 CACTACGACAAGAAAGAGGTGATG 59.377 45.833 0.00 0.00 0.00 3.07
361 362 4.523173 ACTACGACAAGAAAGAGGTGATGA 59.477 41.667 0.00 0.00 0.00 2.92
362 363 3.654414 ACGACAAGAAAGAGGTGATGAC 58.346 45.455 0.00 0.00 0.00 3.06
363 364 2.663602 CGACAAGAAAGAGGTGATGACG 59.336 50.000 0.00 0.00 0.00 4.35
364 365 2.996621 GACAAGAAAGAGGTGATGACGG 59.003 50.000 0.00 0.00 0.00 4.79
365 366 1.734465 CAAGAAAGAGGTGATGACGGC 59.266 52.381 0.00 0.00 0.00 5.68
366 367 0.976641 AGAAAGAGGTGATGACGGCA 59.023 50.000 0.00 0.00 0.00 5.69
367 368 1.066573 AGAAAGAGGTGATGACGGCAG 60.067 52.381 0.00 0.00 0.00 4.85
368 369 0.674895 AAAGAGGTGATGACGGCAGC 60.675 55.000 0.00 0.00 0.00 5.25
369 370 1.830587 AAGAGGTGATGACGGCAGCA 61.831 55.000 4.32 4.32 38.25 4.41
381 382 2.558313 GCAGCACGCCTTCTGTTC 59.442 61.111 0.00 0.00 33.09 3.18
382 383 2.970974 GCAGCACGCCTTCTGTTCC 61.971 63.158 0.00 0.00 33.09 3.62
383 384 1.302033 CAGCACGCCTTCTGTTCCT 60.302 57.895 0.00 0.00 0.00 3.36
387 388 1.151668 CACGCCTTCTGTTCCTTCTG 58.848 55.000 0.00 0.00 0.00 3.02
394 395 4.565652 GCCTTCTGTTCCTTCTGGTGATTA 60.566 45.833 0.00 0.00 34.23 1.75
402 403 5.769484 TCCTTCTGGTGATTATAGTCGTC 57.231 43.478 0.00 0.00 34.23 4.20
404 405 4.036498 CCTTCTGGTGATTATAGTCGTCGT 59.964 45.833 0.00 0.00 0.00 4.34
413 414 6.796072 GTGATTATAGTCGTCGTTAGGTGATC 59.204 42.308 0.00 0.00 0.00 2.92
420 421 3.562973 TCGTCGTTAGGTGATCTATGGAC 59.437 47.826 0.00 0.00 32.11 4.02
424 425 5.181622 GTCGTTAGGTGATCTATGGACCTAG 59.818 48.000 8.45 0.90 42.11 3.02
433 434 7.873505 GGTGATCTATGGACCTAGTTGTAATTC 59.126 40.741 0.00 0.00 0.00 2.17
493 494 2.451490 TGGACAGACCACTTTTTGCAA 58.549 42.857 0.00 0.00 44.64 4.08
497 498 6.082027 TGGACAGACCACTTTTTGCAAAAAG 61.082 40.000 42.26 42.26 45.91 2.27
582 583 6.238621 CGATATTTGTTTTGGGGAATCATCGA 60.239 38.462 0.00 0.00 0.00 3.59
584 585 2.080693 TGTTTTGGGGAATCATCGACG 58.919 47.619 0.00 0.00 0.00 5.12
655 656 2.054799 CTAAGCTTATAGGGGCCCACA 58.945 52.381 27.72 12.99 0.00 4.17
657 658 0.846693 AGCTTATAGGGGCCCACAAG 59.153 55.000 27.72 23.32 0.00 3.16
710 711 5.202640 GTTCAAATCGTGTTTAGCGAAAGT 58.797 37.500 0.00 0.00 41.84 2.66
734 735 1.378119 CGGCTGTAGGAAAACCCCC 60.378 63.158 0.00 0.00 34.66 5.40
776 777 2.106332 GGTCAGACCGGCCGTATG 59.894 66.667 26.12 18.86 34.87 2.39
918 919 2.903855 CGCATCCATCACTGCCCC 60.904 66.667 0.00 0.00 34.89 5.80
935 936 1.226746 CCCCCGACATTAAATCGAGC 58.773 55.000 12.65 0.00 42.25 5.03
1346 1398 1.386945 GTCCCCCTTTCCCTTTCCC 59.613 63.158 0.00 0.00 0.00 3.97
1531 1583 1.446966 GCTGCTCGGGTCTCTTGTC 60.447 63.158 0.00 0.00 0.00 3.18
1532 1584 1.967535 CTGCTCGGGTCTCTTGTCA 59.032 57.895 0.00 0.00 0.00 3.58
1533 1585 0.108898 CTGCTCGGGTCTCTTGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
1534 1586 1.216710 GCTCGGGTCTCTTGTCAGG 59.783 63.158 0.00 0.00 0.00 3.86
1536 1588 1.479709 CTCGGGTCTCTTGTCAGGAT 58.520 55.000 0.00 0.00 0.00 3.24
1537 1589 1.827969 CTCGGGTCTCTTGTCAGGATT 59.172 52.381 0.00 0.00 0.00 3.01
1545 1638 0.109597 CTTGTCAGGATTTGCGTGCC 60.110 55.000 0.00 0.00 32.54 5.01
1554 1647 2.472414 ATTTGCGTGCCCCCTCGTAA 62.472 55.000 0.00 0.00 32.34 3.18
1647 1740 0.667792 AACGGAGAACTGCTCGCTTC 60.668 55.000 0.00 0.00 44.91 3.86
1685 1778 1.832883 TATTTTGACCATGGCTGCGT 58.167 45.000 13.04 0.00 0.00 5.24
1753 1858 3.602104 TCCCGAACGGAGGAAGTAT 57.398 52.632 15.07 0.00 34.86 2.12
1754 1859 2.734755 TCCCGAACGGAGGAAGTATA 57.265 50.000 15.07 0.00 34.86 1.47
1768 1876 8.353684 CGGAGGAAGTATATATGATGGTATGTC 58.646 40.741 0.00 0.00 0.00 3.06
1777 1885 4.944619 ATGATGGTATGTCGAGTCATGT 57.055 40.909 0.00 0.00 0.00 3.21
1784 1892 6.792326 TGGTATGTCGAGTCATGTAAGTAAG 58.208 40.000 0.00 0.00 0.00 2.34
1986 2100 5.923733 AGATAGTCCGTTGAGAGAACATT 57.076 39.130 0.00 0.00 0.00 2.71
1987 2101 5.655488 AGATAGTCCGTTGAGAGAACATTG 58.345 41.667 0.00 0.00 0.00 2.82
1992 2106 4.330074 GTCCGTTGAGAGAACATTGTATGG 59.670 45.833 0.00 0.00 33.60 2.74
1993 2107 3.623060 CCGTTGAGAGAACATTGTATGGG 59.377 47.826 0.00 0.00 33.60 4.00
2052 2167 4.778213 TCCTCTATGGAAATCCTTGTGG 57.222 45.455 0.44 2.32 42.94 4.17
2058 2173 1.076841 TGGAAATCCTTGTGGCATCCA 59.923 47.619 0.44 0.00 37.00 3.41
2106 2221 0.106015 GGATGTTATTGGGGCTGCCT 60.106 55.000 19.68 0.28 0.00 4.75
2107 2222 1.322442 GATGTTATTGGGGCTGCCTC 58.678 55.000 19.68 16.49 0.00 4.70
2133 2248 9.743057 CAGTAACAAACAATTTTCTGGTTATCA 57.257 29.630 0.00 0.00 0.00 2.15
2167 2282 3.363378 CGCAGATGCCGATAAACTCATTC 60.363 47.826 0.00 0.00 37.91 2.67
2172 2287 6.204301 CAGATGCCGATAAACTCATTCTCAAT 59.796 38.462 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.119862 GACGGCTATAGCATTTGAGACAA 58.880 43.478 25.53 0.00 44.36 3.18
1 2 3.492656 GGACGGCTATAGCATTTGAGACA 60.493 47.826 25.53 0.00 44.36 3.41
2 3 3.060602 GGACGGCTATAGCATTTGAGAC 58.939 50.000 25.53 5.27 44.36 3.36
3 4 2.698274 TGGACGGCTATAGCATTTGAGA 59.302 45.455 25.53 0.93 44.36 3.27
4 5 3.062763 CTGGACGGCTATAGCATTTGAG 58.937 50.000 25.53 11.60 44.36 3.02
5 6 2.224281 CCTGGACGGCTATAGCATTTGA 60.224 50.000 25.53 6.01 44.36 2.69
6 7 2.146342 CCTGGACGGCTATAGCATTTG 58.854 52.381 25.53 14.12 44.36 2.32
7 8 2.047061 TCCTGGACGGCTATAGCATTT 58.953 47.619 25.53 9.23 44.36 2.32
8 9 1.717032 TCCTGGACGGCTATAGCATT 58.283 50.000 25.53 11.82 44.36 3.56
9 10 1.827969 GATCCTGGACGGCTATAGCAT 59.172 52.381 25.53 13.41 44.36 3.79
10 11 1.257743 GATCCTGGACGGCTATAGCA 58.742 55.000 25.53 4.32 44.36 3.49
11 12 1.257743 TGATCCTGGACGGCTATAGC 58.742 55.000 16.78 16.78 41.14 2.97
12 13 4.310769 CTTTTGATCCTGGACGGCTATAG 58.689 47.826 0.00 0.00 0.00 1.31
13 14 3.071023 CCTTTTGATCCTGGACGGCTATA 59.929 47.826 0.00 0.00 0.00 1.31
14 15 2.158755 CCTTTTGATCCTGGACGGCTAT 60.159 50.000 0.00 0.00 0.00 2.97
15 16 1.209504 CCTTTTGATCCTGGACGGCTA 59.790 52.381 0.00 0.00 0.00 3.93
16 17 0.035056 CCTTTTGATCCTGGACGGCT 60.035 55.000 0.00 0.00 0.00 5.52
17 18 0.035439 TCCTTTTGATCCTGGACGGC 60.035 55.000 0.00 0.00 0.00 5.68
18 19 1.739067 GTCCTTTTGATCCTGGACGG 58.261 55.000 0.00 0.00 39.39 4.79
20 21 1.003233 ACGGTCCTTTTGATCCTGGAC 59.997 52.381 0.00 12.31 45.86 4.02
21 22 1.003118 CACGGTCCTTTTGATCCTGGA 59.997 52.381 0.00 0.00 0.00 3.86
22 23 1.003118 TCACGGTCCTTTTGATCCTGG 59.997 52.381 0.00 0.00 0.00 4.45
23 24 2.350522 CTCACGGTCCTTTTGATCCTG 58.649 52.381 0.00 0.00 0.00 3.86
24 25 1.339151 GCTCACGGTCCTTTTGATCCT 60.339 52.381 0.00 0.00 0.00 3.24
25 26 1.087501 GCTCACGGTCCTTTTGATCC 58.912 55.000 0.00 0.00 0.00 3.36
26 27 1.087501 GGCTCACGGTCCTTTTGATC 58.912 55.000 0.00 0.00 0.00 2.92
27 28 0.400213 TGGCTCACGGTCCTTTTGAT 59.600 50.000 0.00 0.00 0.00 2.57
28 29 0.181587 TTGGCTCACGGTCCTTTTGA 59.818 50.000 0.00 0.00 0.00 2.69
29 30 1.247567 ATTGGCTCACGGTCCTTTTG 58.752 50.000 0.00 0.00 0.00 2.44
30 31 1.995376 AATTGGCTCACGGTCCTTTT 58.005 45.000 0.00 0.00 0.00 2.27
31 32 1.995376 AAATTGGCTCACGGTCCTTT 58.005 45.000 0.00 0.00 0.00 3.11
32 33 1.886542 GAAAATTGGCTCACGGTCCTT 59.113 47.619 0.00 0.00 0.00 3.36
33 34 1.073923 AGAAAATTGGCTCACGGTCCT 59.926 47.619 0.00 0.00 0.00 3.85
34 35 1.200020 CAGAAAATTGGCTCACGGTCC 59.800 52.381 0.00 0.00 0.00 4.46
35 36 1.200020 CCAGAAAATTGGCTCACGGTC 59.800 52.381 0.00 0.00 0.00 4.79
36 37 1.202879 TCCAGAAAATTGGCTCACGGT 60.203 47.619 0.00 0.00 38.16 4.83
37 38 1.533625 TCCAGAAAATTGGCTCACGG 58.466 50.000 0.00 0.00 38.16 4.94
38 39 2.351738 GGTTCCAGAAAATTGGCTCACG 60.352 50.000 0.00 0.00 38.16 4.35
39 40 2.627699 TGGTTCCAGAAAATTGGCTCAC 59.372 45.455 0.00 0.00 38.16 3.51
40 41 2.956132 TGGTTCCAGAAAATTGGCTCA 58.044 42.857 0.00 0.00 38.16 4.26
41 42 3.306294 CCTTGGTTCCAGAAAATTGGCTC 60.306 47.826 0.00 0.00 38.16 4.70
42 43 2.634453 CCTTGGTTCCAGAAAATTGGCT 59.366 45.455 0.00 0.00 38.16 4.75
43 44 2.632512 TCCTTGGTTCCAGAAAATTGGC 59.367 45.455 0.00 0.00 38.16 4.52
44 45 4.262592 CCTTCCTTGGTTCCAGAAAATTGG 60.263 45.833 0.00 0.00 39.70 3.16
45 46 4.800582 GCCTTCCTTGGTTCCAGAAAATTG 60.801 45.833 0.00 0.00 0.00 2.32
46 47 3.324846 GCCTTCCTTGGTTCCAGAAAATT 59.675 43.478 0.00 0.00 0.00 1.82
47 48 2.899900 GCCTTCCTTGGTTCCAGAAAAT 59.100 45.455 0.00 0.00 0.00 1.82
48 49 2.091333 AGCCTTCCTTGGTTCCAGAAAA 60.091 45.455 0.00 0.00 0.00 2.29
49 50 1.499007 AGCCTTCCTTGGTTCCAGAAA 59.501 47.619 0.00 0.00 0.00 2.52
50 51 1.149101 AGCCTTCCTTGGTTCCAGAA 58.851 50.000 0.00 0.00 0.00 3.02
51 52 0.401738 CAGCCTTCCTTGGTTCCAGA 59.598 55.000 0.00 0.00 0.00 3.86
52 53 0.111253 ACAGCCTTCCTTGGTTCCAG 59.889 55.000 0.00 0.00 0.00 3.86
53 54 1.351017 CTACAGCCTTCCTTGGTTCCA 59.649 52.381 0.00 0.00 0.00 3.53
54 55 1.628846 TCTACAGCCTTCCTTGGTTCC 59.371 52.381 0.00 0.00 0.00 3.62
55 56 3.636153 ATCTACAGCCTTCCTTGGTTC 57.364 47.619 0.00 0.00 0.00 3.62
56 57 4.388577 AAATCTACAGCCTTCCTTGGTT 57.611 40.909 0.00 0.00 0.00 3.67
57 58 5.514500 TTAAATCTACAGCCTTCCTTGGT 57.486 39.130 0.00 0.00 0.00 3.67
58 59 6.834168 TTTTAAATCTACAGCCTTCCTTGG 57.166 37.500 0.00 0.00 0.00 3.61
83 84 5.729510 CCCATATGTTTCAACGGGATTTTT 58.270 37.500 1.24 0.00 35.57 1.94
84 85 4.382577 GCCCATATGTTTCAACGGGATTTT 60.383 41.667 1.24 0.00 35.57 1.82
85 86 3.132111 GCCCATATGTTTCAACGGGATTT 59.868 43.478 1.24 0.00 35.57 2.17
86 87 2.693074 GCCCATATGTTTCAACGGGATT 59.307 45.455 1.24 0.00 35.57 3.01
87 88 2.306847 GCCCATATGTTTCAACGGGAT 58.693 47.619 1.24 0.00 35.57 3.85
88 89 1.683629 GGCCCATATGTTTCAACGGGA 60.684 52.381 1.24 0.00 35.57 5.14
89 90 0.744281 GGCCCATATGTTTCAACGGG 59.256 55.000 1.24 0.00 36.71 5.28
90 91 1.468985 TGGCCCATATGTTTCAACGG 58.531 50.000 0.00 0.00 0.00 4.44
91 92 3.799281 AATGGCCCATATGTTTCAACG 57.201 42.857 0.00 0.00 0.00 4.10
92 93 5.343307 AGAAATGGCCCATATGTTTCAAC 57.657 39.130 14.60 0.00 32.66 3.18
93 94 5.598005 CCTAGAAATGGCCCATATGTTTCAA 59.402 40.000 14.60 0.00 32.66 2.69
94 95 5.103728 TCCTAGAAATGGCCCATATGTTTCA 60.104 40.000 14.60 5.44 32.66 2.69
95 96 5.385198 TCCTAGAAATGGCCCATATGTTTC 58.615 41.667 0.00 0.00 0.00 2.78
96 97 5.402054 TCCTAGAAATGGCCCATATGTTT 57.598 39.130 0.00 0.00 0.00 2.83
97 98 5.314306 AGATCCTAGAAATGGCCCATATGTT 59.686 40.000 0.00 0.00 0.00 2.71
98 99 4.854436 AGATCCTAGAAATGGCCCATATGT 59.146 41.667 0.00 0.00 0.00 2.29
99 100 5.045359 TGAGATCCTAGAAATGGCCCATATG 60.045 44.000 0.00 0.00 0.00 1.78
100 101 5.103687 TGAGATCCTAGAAATGGCCCATAT 58.896 41.667 0.00 0.00 0.00 1.78
101 102 4.502415 TGAGATCCTAGAAATGGCCCATA 58.498 43.478 0.00 0.00 0.00 2.74
102 103 3.330198 TGAGATCCTAGAAATGGCCCAT 58.670 45.455 0.00 0.00 0.00 4.00
103 104 2.775418 TGAGATCCTAGAAATGGCCCA 58.225 47.619 0.00 0.00 0.00 5.36
104 105 3.864789 TTGAGATCCTAGAAATGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
105 106 6.538263 AGTATTTGAGATCCTAGAAATGGCC 58.462 40.000 0.00 0.00 0.00 5.36
106 107 7.604545 GGTAGTATTTGAGATCCTAGAAATGGC 59.395 40.741 0.00 0.00 0.00 4.40
107 108 8.651389 TGGTAGTATTTGAGATCCTAGAAATGG 58.349 37.037 0.00 0.00 0.00 3.16
110 111 8.577296 CGATGGTAGTATTTGAGATCCTAGAAA 58.423 37.037 0.00 0.00 0.00 2.52
111 112 7.309255 GCGATGGTAGTATTTGAGATCCTAGAA 60.309 40.741 0.00 0.00 0.00 2.10
112 113 6.151312 GCGATGGTAGTATTTGAGATCCTAGA 59.849 42.308 0.00 0.00 0.00 2.43
113 114 6.326375 GCGATGGTAGTATTTGAGATCCTAG 58.674 44.000 0.00 0.00 0.00 3.02
114 115 5.185249 GGCGATGGTAGTATTTGAGATCCTA 59.815 44.000 0.00 0.00 0.00 2.94
115 116 4.021016 GGCGATGGTAGTATTTGAGATCCT 60.021 45.833 0.00 0.00 0.00 3.24
116 117 4.246458 GGCGATGGTAGTATTTGAGATCC 58.754 47.826 0.00 0.00 0.00 3.36
117 118 4.246458 GGGCGATGGTAGTATTTGAGATC 58.754 47.826 0.00 0.00 0.00 2.75
118 119 3.306088 CGGGCGATGGTAGTATTTGAGAT 60.306 47.826 0.00 0.00 0.00 2.75
119 120 2.035449 CGGGCGATGGTAGTATTTGAGA 59.965 50.000 0.00 0.00 0.00 3.27
120 121 2.404215 CGGGCGATGGTAGTATTTGAG 58.596 52.381 0.00 0.00 0.00 3.02
121 122 1.069513 CCGGGCGATGGTAGTATTTGA 59.930 52.381 0.00 0.00 0.00 2.69
122 123 1.508632 CCGGGCGATGGTAGTATTTG 58.491 55.000 0.00 0.00 0.00 2.32
123 124 0.395312 CCCGGGCGATGGTAGTATTT 59.605 55.000 8.08 0.00 0.00 1.40
124 125 0.470456 TCCCGGGCGATGGTAGTATT 60.470 55.000 18.49 0.00 0.00 1.89
125 126 0.252103 ATCCCGGGCGATGGTAGTAT 60.252 55.000 18.49 0.00 0.00 2.12
126 127 0.470456 AATCCCGGGCGATGGTAGTA 60.470 55.000 18.49 0.00 0.00 1.82
127 128 0.470456 TAATCCCGGGCGATGGTAGT 60.470 55.000 18.49 0.00 0.00 2.73
128 129 0.682852 TTAATCCCGGGCGATGGTAG 59.317 55.000 18.49 0.00 0.00 3.18
129 130 1.129917 TTTAATCCCGGGCGATGGTA 58.870 50.000 18.49 0.00 0.00 3.25
130 131 0.256464 TTTTAATCCCGGGCGATGGT 59.744 50.000 18.49 0.00 0.00 3.55
131 132 1.336755 CTTTTTAATCCCGGGCGATGG 59.663 52.381 18.49 0.00 0.00 3.51
132 133 1.269051 GCTTTTTAATCCCGGGCGATG 60.269 52.381 18.49 1.09 0.00 3.84
133 134 1.029681 GCTTTTTAATCCCGGGCGAT 58.970 50.000 18.49 0.96 0.00 4.58
134 135 1.033202 GGCTTTTTAATCCCGGGCGA 61.033 55.000 18.49 0.00 0.00 5.54
135 136 1.435925 GGCTTTTTAATCCCGGGCG 59.564 57.895 18.49 0.00 0.00 6.13
136 137 1.682451 GGGGCTTTTTAATCCCGGGC 61.682 60.000 18.49 0.00 40.97 6.13
137 138 0.032515 AGGGGCTTTTTAATCCCGGG 60.033 55.000 16.85 16.85 43.92 5.73
138 139 1.111277 CAGGGGCTTTTTAATCCCGG 58.889 55.000 0.00 0.00 43.92 5.73
139 140 2.024414 CTCAGGGGCTTTTTAATCCCG 58.976 52.381 0.00 0.00 43.92 5.14
140 141 1.757118 GCTCAGGGGCTTTTTAATCCC 59.243 52.381 0.00 0.00 39.67 3.85
141 142 1.405463 CGCTCAGGGGCTTTTTAATCC 59.595 52.381 0.00 0.00 0.00 3.01
142 143 2.365582 TCGCTCAGGGGCTTTTTAATC 58.634 47.619 0.00 0.00 0.00 1.75
143 144 2.507407 TCGCTCAGGGGCTTTTTAAT 57.493 45.000 0.00 0.00 0.00 1.40
144 145 2.279935 TTCGCTCAGGGGCTTTTTAA 57.720 45.000 0.00 0.00 0.00 1.52
145 146 2.507407 ATTCGCTCAGGGGCTTTTTA 57.493 45.000 0.00 0.00 0.00 1.52
146 147 1.546029 GAATTCGCTCAGGGGCTTTTT 59.454 47.619 0.00 0.00 0.00 1.94
147 148 1.177401 GAATTCGCTCAGGGGCTTTT 58.823 50.000 0.00 0.00 0.00 2.27
148 149 0.329596 AGAATTCGCTCAGGGGCTTT 59.670 50.000 0.00 0.00 0.00 3.51
149 150 0.107459 GAGAATTCGCTCAGGGGCTT 60.107 55.000 1.46 0.00 35.01 4.35
150 151 0.980231 AGAGAATTCGCTCAGGGGCT 60.980 55.000 5.81 0.00 37.37 5.19
151 152 0.813210 CAGAGAATTCGCTCAGGGGC 60.813 60.000 8.93 0.00 37.37 5.80
152 153 0.813210 GCAGAGAATTCGCTCAGGGG 60.813 60.000 8.93 0.00 37.37 4.79
153 154 0.107993 TGCAGAGAATTCGCTCAGGG 60.108 55.000 8.93 0.00 37.37 4.45
154 155 1.396301 GTTGCAGAGAATTCGCTCAGG 59.604 52.381 8.93 0.00 37.37 3.86
155 156 1.396301 GGTTGCAGAGAATTCGCTCAG 59.604 52.381 8.93 0.53 37.37 3.35
156 157 1.270785 TGGTTGCAGAGAATTCGCTCA 60.271 47.619 8.93 7.80 37.37 4.26
157 158 1.442769 TGGTTGCAGAGAATTCGCTC 58.557 50.000 8.93 5.40 35.11 5.03
158 159 1.808945 CTTGGTTGCAGAGAATTCGCT 59.191 47.619 5.81 5.81 0.00 4.93
159 160 1.135575 CCTTGGTTGCAGAGAATTCGC 60.136 52.381 0.22 0.22 0.00 4.70
160 161 2.426522 TCCTTGGTTGCAGAGAATTCG 58.573 47.619 0.00 0.00 0.00 3.34
161 162 3.569701 TGTTCCTTGGTTGCAGAGAATTC 59.430 43.478 0.00 0.00 0.00 2.17
162 163 3.565307 TGTTCCTTGGTTGCAGAGAATT 58.435 40.909 0.00 0.00 0.00 2.17
163 164 3.228188 TGTTCCTTGGTTGCAGAGAAT 57.772 42.857 0.00 0.00 0.00 2.40
164 165 2.727123 TGTTCCTTGGTTGCAGAGAA 57.273 45.000 0.00 0.00 0.00 2.87
165 166 2.727123 TTGTTCCTTGGTTGCAGAGA 57.273 45.000 0.00 0.00 0.00 3.10
166 167 2.608752 GCATTGTTCCTTGGTTGCAGAG 60.609 50.000 0.00 0.00 0.00 3.35
167 168 1.340889 GCATTGTTCCTTGGTTGCAGA 59.659 47.619 0.00 0.00 0.00 4.26
168 169 1.068895 TGCATTGTTCCTTGGTTGCAG 59.931 47.619 0.00 0.00 35.36 4.41
169 170 1.068895 CTGCATTGTTCCTTGGTTGCA 59.931 47.619 0.00 0.00 37.73 4.08
170 171 1.787012 CTGCATTGTTCCTTGGTTGC 58.213 50.000 0.00 0.00 0.00 4.17
171 172 1.342174 AGCTGCATTGTTCCTTGGTTG 59.658 47.619 1.02 0.00 0.00 3.77
172 173 1.708341 AGCTGCATTGTTCCTTGGTT 58.292 45.000 1.02 0.00 0.00 3.67
173 174 1.708341 AAGCTGCATTGTTCCTTGGT 58.292 45.000 1.02 0.00 0.00 3.67
174 175 2.825861 AAAGCTGCATTGTTCCTTGG 57.174 45.000 1.02 0.00 0.00 3.61
175 176 7.315142 TCTATTAAAAGCTGCATTGTTCCTTG 58.685 34.615 1.02 0.00 0.00 3.61
176 177 7.466746 TCTATTAAAAGCTGCATTGTTCCTT 57.533 32.000 1.02 0.00 0.00 3.36
177 178 7.466746 TTCTATTAAAAGCTGCATTGTTCCT 57.533 32.000 1.02 0.00 0.00 3.36
178 179 8.707938 AATTCTATTAAAAGCTGCATTGTTCC 57.292 30.769 1.02 0.00 0.00 3.62
185 186 9.816354 GGGATAAAAATTCTATTAAAAGCTGCA 57.184 29.630 1.02 0.00 0.00 4.41
186 187 8.968242 CGGGATAAAAATTCTATTAAAAGCTGC 58.032 33.333 0.00 0.00 0.00 5.25
187 188 8.968242 GCGGGATAAAAATTCTATTAAAAGCTG 58.032 33.333 0.00 0.00 0.00 4.24
188 189 8.914011 AGCGGGATAAAAATTCTATTAAAAGCT 58.086 29.630 0.00 0.00 0.00 3.74
189 190 8.968242 CAGCGGGATAAAAATTCTATTAAAAGC 58.032 33.333 0.00 0.00 0.00 3.51
190 191 8.968242 GCAGCGGGATAAAAATTCTATTAAAAG 58.032 33.333 0.00 0.00 0.00 2.27
191 192 8.470805 TGCAGCGGGATAAAAATTCTATTAAAA 58.529 29.630 0.00 0.00 0.00 1.52
192 193 8.001881 TGCAGCGGGATAAAAATTCTATTAAA 57.998 30.769 0.00 0.00 0.00 1.52
193 194 7.575414 TGCAGCGGGATAAAAATTCTATTAA 57.425 32.000 0.00 0.00 0.00 1.40
194 195 7.422399 GTTGCAGCGGGATAAAAATTCTATTA 58.578 34.615 0.00 0.00 0.00 0.98
195 196 6.273071 GTTGCAGCGGGATAAAAATTCTATT 58.727 36.000 0.00 0.00 0.00 1.73
196 197 5.505654 CGTTGCAGCGGGATAAAAATTCTAT 60.506 40.000 15.84 0.00 0.00 1.98
197 198 4.201871 CGTTGCAGCGGGATAAAAATTCTA 60.202 41.667 15.84 0.00 0.00 2.10
198 199 3.427503 CGTTGCAGCGGGATAAAAATTCT 60.428 43.478 15.84 0.00 0.00 2.40
199 200 2.851824 CGTTGCAGCGGGATAAAAATTC 59.148 45.455 15.84 0.00 0.00 2.17
200 201 2.874849 CGTTGCAGCGGGATAAAAATT 58.125 42.857 15.84 0.00 0.00 1.82
201 202 1.469079 GCGTTGCAGCGGGATAAAAAT 60.469 47.619 24.49 0.00 0.00 1.82
202 203 0.109504 GCGTTGCAGCGGGATAAAAA 60.110 50.000 24.49 0.00 0.00 1.94
203 204 1.237954 TGCGTTGCAGCGGGATAAAA 61.238 50.000 24.49 0.00 40.67 1.52
204 205 1.029408 ATGCGTTGCAGCGGGATAAA 61.029 50.000 24.49 0.00 43.65 1.40
205 206 1.451207 ATGCGTTGCAGCGGGATAA 60.451 52.632 24.49 0.00 43.65 1.75
206 207 2.179547 CATGCGTTGCAGCGGGATA 61.180 57.895 24.49 0.00 43.65 2.59
207 208 3.511595 CATGCGTTGCAGCGGGAT 61.512 61.111 24.49 9.09 43.65 3.85
213 214 2.510064 AAATGGCCCATGCGTTGCAG 62.510 55.000 0.00 0.00 43.65 4.41
214 215 2.109517 AAAATGGCCCATGCGTTGCA 62.110 50.000 0.00 0.00 44.86 4.08
215 216 0.954938 AAAAATGGCCCATGCGTTGC 60.955 50.000 0.00 0.00 38.85 4.17
216 217 1.077915 GAAAAATGGCCCATGCGTTG 58.922 50.000 0.00 0.00 38.85 4.10
217 218 0.975887 AGAAAAATGGCCCATGCGTT 59.024 45.000 0.00 0.00 38.85 4.84
218 219 1.750778 CTAGAAAAATGGCCCATGCGT 59.249 47.619 0.00 0.00 38.85 5.24
219 220 1.750778 ACTAGAAAAATGGCCCATGCG 59.249 47.619 0.00 0.00 38.85 4.73
220 221 3.026694 AGACTAGAAAAATGGCCCATGC 58.973 45.455 0.00 0.00 0.00 4.06
221 222 4.706476 TGAAGACTAGAAAAATGGCCCATG 59.294 41.667 0.00 0.00 0.00 3.66
222 223 4.934356 TGAAGACTAGAAAAATGGCCCAT 58.066 39.130 0.00 0.00 0.00 4.00
223 224 4.380843 TGAAGACTAGAAAAATGGCCCA 57.619 40.909 0.00 0.00 0.00 5.36
224 225 5.921962 ATTGAAGACTAGAAAAATGGCCC 57.078 39.130 0.00 0.00 0.00 5.80
225 226 6.030228 CGAATTGAAGACTAGAAAAATGGCC 58.970 40.000 0.00 0.00 0.00 5.36
226 227 6.743172 GTCGAATTGAAGACTAGAAAAATGGC 59.257 38.462 0.00 0.00 34.74 4.40
227 228 6.955963 CGTCGAATTGAAGACTAGAAAAATGG 59.044 38.462 0.00 0.00 35.38 3.16
228 229 7.729836 TCGTCGAATTGAAGACTAGAAAAATG 58.270 34.615 0.00 0.00 35.38 2.32
229 230 7.884816 TCGTCGAATTGAAGACTAGAAAAAT 57.115 32.000 0.00 0.00 35.38 1.82
248 249 0.247262 CAACCAATGCATCGTCGTCG 60.247 55.000 0.00 0.00 38.55 5.12
249 250 1.075542 TCAACCAATGCATCGTCGTC 58.924 50.000 0.00 0.00 0.00 4.20
250 251 1.737838 ATCAACCAATGCATCGTCGT 58.262 45.000 0.00 0.00 0.00 4.34
251 252 2.830772 AATCAACCAATGCATCGTCG 57.169 45.000 0.00 0.00 0.00 5.12
252 253 3.181397 CCAAATCAACCAATGCATCGTC 58.819 45.455 0.00 0.00 0.00 4.20
253 254 2.562298 ACCAAATCAACCAATGCATCGT 59.438 40.909 0.00 0.00 0.00 3.73
254 255 3.235157 ACCAAATCAACCAATGCATCG 57.765 42.857 0.00 0.00 0.00 3.84
255 256 5.006941 GCAATACCAAATCAACCAATGCATC 59.993 40.000 0.00 0.00 0.00 3.91
256 257 4.877251 GCAATACCAAATCAACCAATGCAT 59.123 37.500 0.00 0.00 0.00 3.96
257 258 4.252073 GCAATACCAAATCAACCAATGCA 58.748 39.130 0.00 0.00 0.00 3.96
258 259 4.252073 TGCAATACCAAATCAACCAATGC 58.748 39.130 0.00 0.00 0.00 3.56
259 260 5.933463 AGTTGCAATACCAAATCAACCAATG 59.067 36.000 0.59 0.00 38.13 2.82
260 261 6.112927 AGTTGCAATACCAAATCAACCAAT 57.887 33.333 0.59 0.00 38.13 3.16
261 262 5.069648 TGAGTTGCAATACCAAATCAACCAA 59.930 36.000 0.59 0.00 43.96 3.67
262 263 4.586421 TGAGTTGCAATACCAAATCAACCA 59.414 37.500 0.59 0.00 43.96 3.67
263 264 5.132897 TGAGTTGCAATACCAAATCAACC 57.867 39.130 0.59 0.00 43.96 3.77
266 267 6.990798 TGAATTGAGTTGCAATACCAAATCA 58.009 32.000 17.49 17.49 46.25 2.57
267 268 7.887996 TTGAATTGAGTTGCAATACCAAATC 57.112 32.000 0.59 10.29 46.25 2.17
268 269 8.851541 AATTGAATTGAGTTGCAATACCAAAT 57.148 26.923 0.59 0.60 46.25 2.32
269 270 8.674263 AAATTGAATTGAGTTGCAATACCAAA 57.326 26.923 0.59 0.00 46.25 3.28
270 271 8.149647 AGAAATTGAATTGAGTTGCAATACCAA 58.850 29.630 0.59 7.93 46.25 3.67
271 272 7.669427 AGAAATTGAATTGAGTTGCAATACCA 58.331 30.769 0.59 0.00 46.25 3.25
272 273 8.437742 CAAGAAATTGAATTGAGTTGCAATACC 58.562 33.333 0.59 0.00 46.25 2.73
273 274 8.437742 CCAAGAAATTGAATTGAGTTGCAATAC 58.562 33.333 0.59 0.21 46.25 1.89
274 275 8.149647 ACCAAGAAATTGAATTGAGTTGCAATA 58.850 29.630 0.59 0.00 46.25 1.90
276 277 6.347696 ACCAAGAAATTGAATTGAGTTGCAA 58.652 32.000 0.00 0.00 41.53 4.08
277 278 5.916318 ACCAAGAAATTGAATTGAGTTGCA 58.084 33.333 0.00 0.00 0.00 4.08
278 279 6.479660 TCAACCAAGAAATTGAATTGAGTTGC 59.520 34.615 16.52 0.00 36.34 4.17
279 280 8.422973 TTCAACCAAGAAATTGAATTGAGTTG 57.577 30.769 15.91 15.91 39.34 3.16
292 293 9.906660 GTTTGATGTATGTATTCAACCAAGAAA 57.093 29.630 0.00 0.00 0.00 2.52
293 294 9.072375 TGTTTGATGTATGTATTCAACCAAGAA 57.928 29.630 0.00 0.00 0.00 2.52
294 295 8.511321 GTGTTTGATGTATGTATTCAACCAAGA 58.489 33.333 0.00 0.00 0.00 3.02
295 296 8.296000 TGTGTTTGATGTATGTATTCAACCAAG 58.704 33.333 0.00 0.00 0.00 3.61
296 297 8.171164 TGTGTTTGATGTATGTATTCAACCAA 57.829 30.769 0.00 0.00 0.00 3.67
297 298 7.574779 GCTGTGTTTGATGTATGTATTCAACCA 60.575 37.037 0.00 0.00 0.00 3.67
298 299 6.747280 GCTGTGTTTGATGTATGTATTCAACC 59.253 38.462 0.00 0.00 0.00 3.77
299 300 7.530010 AGCTGTGTTTGATGTATGTATTCAAC 58.470 34.615 0.00 0.00 0.00 3.18
300 301 7.390162 TGAGCTGTGTTTGATGTATGTATTCAA 59.610 33.333 0.00 0.00 0.00 2.69
301 302 6.878389 TGAGCTGTGTTTGATGTATGTATTCA 59.122 34.615 0.00 0.00 0.00 2.57
302 303 7.307493 TGAGCTGTGTTTGATGTATGTATTC 57.693 36.000 0.00 0.00 0.00 1.75
303 304 7.686438 TTGAGCTGTGTTTGATGTATGTATT 57.314 32.000 0.00 0.00 0.00 1.89
304 305 7.337689 ACATTGAGCTGTGTTTGATGTATGTAT 59.662 33.333 0.00 0.00 0.00 2.29
305 306 6.654582 ACATTGAGCTGTGTTTGATGTATGTA 59.345 34.615 0.00 0.00 0.00 2.29
306 307 5.474532 ACATTGAGCTGTGTTTGATGTATGT 59.525 36.000 0.00 0.00 0.00 2.29
307 308 5.946298 ACATTGAGCTGTGTTTGATGTATG 58.054 37.500 0.00 0.00 0.00 2.39
308 309 6.579666 AACATTGAGCTGTGTTTGATGTAT 57.420 33.333 0.00 0.00 35.13 2.29
309 310 6.389830 AAACATTGAGCTGTGTTTGATGTA 57.610 33.333 16.35 0.00 44.36 2.29
310 311 4.924305 AACATTGAGCTGTGTTTGATGT 57.076 36.364 0.00 0.00 35.13 3.06
315 316 2.483538 GGGCAAACATTGAGCTGTGTTT 60.484 45.455 13.01 13.01 46.29 2.83
316 317 1.069049 GGGCAAACATTGAGCTGTGTT 59.931 47.619 0.00 0.00 40.06 3.32
317 318 0.675633 GGGCAAACATTGAGCTGTGT 59.324 50.000 0.00 0.00 0.00 3.72
318 319 0.037975 GGGGCAAACATTGAGCTGTG 60.038 55.000 0.00 0.00 0.00 3.66
319 320 0.469705 TGGGGCAAACATTGAGCTGT 60.470 50.000 0.00 0.00 0.00 4.40
320 321 0.037975 GTGGGGCAAACATTGAGCTG 60.038 55.000 0.00 0.00 0.00 4.24
321 322 0.178953 AGTGGGGCAAACATTGAGCT 60.179 50.000 0.00 0.00 0.00 4.09
322 323 1.202348 GTAGTGGGGCAAACATTGAGC 59.798 52.381 0.00 0.00 0.00 4.26
323 324 1.468520 CGTAGTGGGGCAAACATTGAG 59.531 52.381 0.00 0.00 0.00 3.02
324 325 1.072489 TCGTAGTGGGGCAAACATTGA 59.928 47.619 0.00 0.00 0.00 2.57
325 326 1.199097 GTCGTAGTGGGGCAAACATTG 59.801 52.381 0.00 0.00 0.00 2.82
326 327 1.202830 TGTCGTAGTGGGGCAAACATT 60.203 47.619 0.00 0.00 0.00 2.71
327 328 0.398696 TGTCGTAGTGGGGCAAACAT 59.601 50.000 0.00 0.00 0.00 2.71
328 329 0.180642 TTGTCGTAGTGGGGCAAACA 59.819 50.000 0.00 0.00 0.00 2.83
329 330 0.872388 CTTGTCGTAGTGGGGCAAAC 59.128 55.000 0.00 0.00 0.00 2.93
330 331 0.759959 TCTTGTCGTAGTGGGGCAAA 59.240 50.000 0.00 0.00 0.00 3.68
331 332 0.759959 TTCTTGTCGTAGTGGGGCAA 59.240 50.000 0.00 0.00 0.00 4.52
332 333 0.759959 TTTCTTGTCGTAGTGGGGCA 59.240 50.000 0.00 0.00 0.00 5.36
333 334 1.001633 TCTTTCTTGTCGTAGTGGGGC 59.998 52.381 0.00 0.00 0.00 5.80
334 335 2.353803 CCTCTTTCTTGTCGTAGTGGGG 60.354 54.545 0.00 0.00 0.00 4.96
335 336 2.299297 ACCTCTTTCTTGTCGTAGTGGG 59.701 50.000 0.00 0.00 0.00 4.61
336 337 3.005472 TCACCTCTTTCTTGTCGTAGTGG 59.995 47.826 0.00 0.00 0.00 4.00
337 338 4.238761 TCACCTCTTTCTTGTCGTAGTG 57.761 45.455 0.00 0.00 0.00 2.74
338 339 4.523173 TCATCACCTCTTTCTTGTCGTAGT 59.477 41.667 0.00 0.00 0.00 2.73
339 340 4.859798 GTCATCACCTCTTTCTTGTCGTAG 59.140 45.833 0.00 0.00 0.00 3.51
340 341 4.615223 CGTCATCACCTCTTTCTTGTCGTA 60.615 45.833 0.00 0.00 0.00 3.43
341 342 3.654414 GTCATCACCTCTTTCTTGTCGT 58.346 45.455 0.00 0.00 0.00 4.34
342 343 2.663602 CGTCATCACCTCTTTCTTGTCG 59.336 50.000 0.00 0.00 0.00 4.35
343 344 2.996621 CCGTCATCACCTCTTTCTTGTC 59.003 50.000 0.00 0.00 0.00 3.18
344 345 2.872038 GCCGTCATCACCTCTTTCTTGT 60.872 50.000 0.00 0.00 0.00 3.16
345 346 1.734465 GCCGTCATCACCTCTTTCTTG 59.266 52.381 0.00 0.00 0.00 3.02
346 347 1.347707 TGCCGTCATCACCTCTTTCTT 59.652 47.619 0.00 0.00 0.00 2.52
347 348 0.976641 TGCCGTCATCACCTCTTTCT 59.023 50.000 0.00 0.00 0.00 2.52
348 349 1.363744 CTGCCGTCATCACCTCTTTC 58.636 55.000 0.00 0.00 0.00 2.62
349 350 0.674895 GCTGCCGTCATCACCTCTTT 60.675 55.000 0.00 0.00 0.00 2.52
350 351 1.078848 GCTGCCGTCATCACCTCTT 60.079 57.895 0.00 0.00 0.00 2.85
351 352 2.285773 TGCTGCCGTCATCACCTCT 61.286 57.895 0.00 0.00 0.00 3.69
352 353 2.103042 GTGCTGCCGTCATCACCTC 61.103 63.158 0.00 0.00 34.27 3.85
353 354 2.046892 GTGCTGCCGTCATCACCT 60.047 61.111 0.00 0.00 34.27 4.00
354 355 3.490759 CGTGCTGCCGTCATCACC 61.491 66.667 0.00 0.00 36.31 4.02
355 356 4.152625 GCGTGCTGCCGTCATCAC 62.153 66.667 11.14 0.00 36.33 3.06
364 365 2.558313 GAACAGAAGGCGTGCTGC 59.442 61.111 14.48 0.00 45.38 5.25
365 366 0.886490 AAGGAACAGAAGGCGTGCTG 60.886 55.000 12.99 12.99 38.10 4.41
366 367 0.603975 GAAGGAACAGAAGGCGTGCT 60.604 55.000 0.00 0.00 0.00 4.40
367 368 0.603975 AGAAGGAACAGAAGGCGTGC 60.604 55.000 0.00 0.00 0.00 5.34
368 369 1.151668 CAGAAGGAACAGAAGGCGTG 58.848 55.000 0.00 0.00 0.00 5.34
369 370 0.035458 CCAGAAGGAACAGAAGGCGT 59.965 55.000 0.00 0.00 36.89 5.68
370 371 0.035458 ACCAGAAGGAACAGAAGGCG 59.965 55.000 0.00 0.00 38.69 5.52
371 372 1.072331 TCACCAGAAGGAACAGAAGGC 59.928 52.381 0.00 0.00 38.69 4.35
372 373 3.710209 ATCACCAGAAGGAACAGAAGG 57.290 47.619 0.00 0.00 38.69 3.46
373 374 7.560368 ACTATAATCACCAGAAGGAACAGAAG 58.440 38.462 0.00 0.00 38.69 2.85
374 375 7.496346 ACTATAATCACCAGAAGGAACAGAA 57.504 36.000 0.00 0.00 38.69 3.02
375 376 6.183360 CGACTATAATCACCAGAAGGAACAGA 60.183 42.308 0.00 0.00 38.69 3.41
376 377 5.980116 CGACTATAATCACCAGAAGGAACAG 59.020 44.000 0.00 0.00 38.69 3.16
377 378 5.421056 ACGACTATAATCACCAGAAGGAACA 59.579 40.000 0.00 0.00 38.69 3.18
378 379 5.903810 ACGACTATAATCACCAGAAGGAAC 58.096 41.667 0.00 0.00 38.69 3.62
379 380 5.220989 CGACGACTATAATCACCAGAAGGAA 60.221 44.000 0.00 0.00 38.69 3.36
380 381 4.275196 CGACGACTATAATCACCAGAAGGA 59.725 45.833 0.00 0.00 38.69 3.36
381 382 4.036498 ACGACGACTATAATCACCAGAAGG 59.964 45.833 0.00 0.00 42.21 3.46
382 383 5.171147 ACGACGACTATAATCACCAGAAG 57.829 43.478 0.00 0.00 0.00 2.85
383 384 5.571784 AACGACGACTATAATCACCAGAA 57.428 39.130 0.00 0.00 0.00 3.02
387 388 5.008019 TCACCTAACGACGACTATAATCACC 59.992 44.000 0.00 0.00 0.00 4.02
394 395 5.411977 CCATAGATCACCTAACGACGACTAT 59.588 44.000 0.00 0.00 0.00 2.12
402 403 5.071370 ACTAGGTCCATAGATCACCTAACG 58.929 45.833 9.49 3.30 41.34 3.18
404 405 6.441222 ACAACTAGGTCCATAGATCACCTAA 58.559 40.000 9.49 0.00 41.34 2.69
433 434 7.707035 ACGCACAAAGATCCTAGAAGTAATAAG 59.293 37.037 0.00 0.00 0.00 1.73
472 473 5.743130 TTTTTGCAAAAAGTGGTCTGTCCAA 60.743 36.000 28.85 6.20 39.17 3.53
493 494 9.654663 GGAGATCACTTGTACAGTATAACTTTT 57.345 33.333 0.00 0.00 32.76 2.27
512 513 5.241506 CCTGTTTGTTTGCTTTAGGAGATCA 59.758 40.000 0.00 0.00 0.00 2.92
582 583 4.758692 GATCCATGGATCGTGCGT 57.241 55.556 33.48 10.26 41.09 5.24
710 711 4.880047 GGTTTTCCTACAGCCGCAGCTA 62.880 54.545 0.00 0.00 41.89 3.32
734 735 3.119849 GGACACGTTCCTCCATGATTTTG 60.120 47.826 0.00 0.00 41.95 2.44
918 919 1.948104 TGGCTCGATTTAATGTCGGG 58.052 50.000 9.89 8.18 42.31 5.14
921 922 2.538939 GCGGTTGGCTCGATTTAATGTC 60.539 50.000 0.00 0.00 39.11 3.06
1092 1099 3.210528 GCGTCGTCGAGGAGGGAT 61.211 66.667 24.18 0.00 39.71 3.85
1240 1249 2.738213 CTTCAGAGGCACAGCGGGTT 62.738 60.000 0.00 0.00 0.00 4.11
1346 1398 5.092781 GCTCTCAGTCGAAGAGAAACTAAG 58.907 45.833 15.28 6.62 41.26 2.18
1531 1583 3.451894 GGGGGCACGCAAATCCTG 61.452 66.667 0.00 0.00 45.96 3.86
1532 1584 3.645268 GAGGGGGCACGCAAATCCT 62.645 63.158 5.55 0.00 45.96 3.24
1533 1585 3.140814 GAGGGGGCACGCAAATCC 61.141 66.667 5.55 0.00 45.96 3.01
1534 1586 2.862674 TACGAGGGGGCACGCAAATC 62.863 60.000 5.55 0.00 45.96 2.17
1536 1588 3.179888 TTACGAGGGGGCACGCAAA 62.180 57.895 5.55 0.00 45.96 3.68
1537 1589 3.627952 TTACGAGGGGGCACGCAA 61.628 61.111 5.55 0.00 45.96 4.85
1545 1638 1.557832 TCCATTTGGAGTTACGAGGGG 59.442 52.381 0.00 0.00 39.78 4.79
1554 1647 1.065854 CGAGGAGCTTCCATTTGGAGT 60.066 52.381 0.00 0.00 46.36 3.85
1647 1740 9.123709 TCAAAATAATAACTTAAGCAAAGCACG 57.876 29.630 1.29 0.00 38.93 5.34
1685 1778 3.407967 GGACGGCCAGAATCCCCA 61.408 66.667 0.00 0.00 0.00 4.96
1714 1807 6.696148 CGGGAGTAAATGACTACTGTACATTC 59.304 42.308 0.00 0.00 40.24 2.67
1721 1814 4.103357 CGTTCGGGAGTAAATGACTACTG 58.897 47.826 0.00 0.00 45.94 2.74
1722 1815 3.129988 CCGTTCGGGAGTAAATGACTACT 59.870 47.826 3.04 0.00 39.28 2.57
1753 1858 7.703058 ACATGACTCGACATACCATCATATA 57.297 36.000 0.00 0.00 0.00 0.86
1754 1859 6.596309 ACATGACTCGACATACCATCATAT 57.404 37.500 0.00 0.00 0.00 1.78
1768 1876 5.629097 ACGAGTTCTTACTTACATGACTCG 58.371 41.667 19.91 19.91 46.48 4.18
1862 1971 8.924303 AGTGACAACTATATTAAGCACCTGATA 58.076 33.333 0.00 0.00 33.79 2.15
1986 2100 6.326583 TGTTTTGTGGATTAAAACCCCATACA 59.673 34.615 9.90 0.00 43.74 2.29
1987 2101 6.760291 TGTTTTGTGGATTAAAACCCCATAC 58.240 36.000 9.90 0.00 43.74 2.39
1992 2106 5.119694 TGCTTGTTTTGTGGATTAAAACCC 58.880 37.500 9.90 0.00 43.74 4.11
1993 2107 6.859420 ATGCTTGTTTTGTGGATTAAAACC 57.141 33.333 9.90 0.00 43.74 3.27
2040 2155 1.135721 GCTGGATGCCACAAGGATTTC 59.864 52.381 0.00 0.00 36.89 2.17
2052 2167 1.304381 TTGGGGAACTGCTGGATGC 60.304 57.895 0.00 0.00 43.25 3.91
2058 2173 0.469705 TGCATTGTTGGGGAACTGCT 60.470 50.000 0.00 0.00 0.00 4.24
2095 2210 1.378762 GTTACTGAGGCAGCCCCAA 59.621 57.895 8.22 0.00 34.37 4.12
2106 2221 9.959749 GATAACCAGAAAATTGTTTGTTACTGA 57.040 29.630 0.00 0.00 0.00 3.41
2107 2222 9.743057 TGATAACCAGAAAATTGTTTGTTACTG 57.257 29.630 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.