Multiple sequence alignment - TraesCS3B01G325100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G325100
chr3B
100.000
9251
0
0
1
9251
525998937
525989687
0.000000e+00
17084.0
1
TraesCS3B01G325100
chr3B
83.871
496
65
5
1523
2015
525993208
525992725
8.940000e-125
459.0
2
TraesCS3B01G325100
chr3B
83.871
496
65
5
5730
6213
525997415
525996923
8.940000e-125
459.0
3
TraesCS3B01G325100
chr3B
100.000
205
0
0
9563
9767
525989375
525989171
7.160000e-101
379.0
4
TraesCS3B01G325100
chr3B
87.065
201
25
1
1469
1668
526001690
526001490
9.870000e-55
226.0
5
TraesCS3B01G325100
chr3B
79.638
221
22
11
5370
5577
525993505
525993295
4.760000e-28
137.0
6
TraesCS3B01G325100
chr3B
79.638
221
22
11
5433
5643
525993568
525993361
4.760000e-28
137.0
7
TraesCS3B01G325100
chr3B
79.861
144
23
4
6951
7091
416809443
416809303
6.240000e-17
100.0
8
TraesCS3B01G325100
chr3B
96.000
50
2
0
650
699
526014655
526014606
2.260000e-11
82.4
9
TraesCS3B01G325100
chr3B
78.899
109
20
3
9640
9746
451310088
451309981
4.890000e-08
71.3
10
TraesCS3B01G325100
chr3B
91.111
45
2
1
767
809
526002113
526002069
1.060000e-04
60.2
11
TraesCS3B01G325100
chr3D
89.394
5695
361
98
3712
9251
400316299
400310693
0.000000e+00
6946.0
12
TraesCS3B01G325100
chr3D
88.828
2175
139
38
2
2122
400320424
400318300
0.000000e+00
2575.0
13
TraesCS3B01G325100
chr3D
85.282
496
58
7
1523
2015
400314249
400313766
1.890000e-136
497.0
14
TraesCS3B01G325100
chr3D
83.394
548
75
7
5679
6218
400318949
400318410
2.450000e-135
494.0
15
TraesCS3B01G325100
chr3D
81.102
508
65
21
5779
6259
400322798
400322295
2.570000e-100
377.0
16
TraesCS3B01G325100
chr3D
95.610
205
8
1
9563
9767
400310635
400310432
2.630000e-85
327.0
17
TraesCS3B01G325100
chr3D
78.112
498
83
16
1572
2053
400322798
400322311
9.590000e-75
292.0
18
TraesCS3B01G325100
chr3D
87.417
151
19
0
1518
1668
400322798
400322648
3.630000e-39
174.0
19
TraesCS3B01G325100
chr3D
89.781
137
10
4
641
773
400323388
400323252
1.300000e-38
172.0
20
TraesCS3B01G325100
chr3D
79.638
221
22
11
5433
5643
400314618
400314411
4.760000e-28
137.0
21
TraesCS3B01G325100
chr3D
78.571
224
25
11
5367
5577
400314558
400314345
1.030000e-24
126.0
22
TraesCS3B01G325100
chr3D
74.150
294
67
8
6804
7091
304978065
304978355
8.020000e-21
113.0
23
TraesCS3B01G325100
chr3D
91.111
45
2
1
767
809
400323217
400323173
1.060000e-04
60.2
24
TraesCS3B01G325100
chr3A
86.822
2193
145
49
4512
6612
519248771
519246631
0.000000e+00
2316.0
25
TraesCS3B01G325100
chr3A
90.618
1343
49
24
6576
7872
519246630
519245319
0.000000e+00
1711.0
26
TraesCS3B01G325100
chr3A
88.492
1121
68
22
1
1089
519252612
519251521
0.000000e+00
1299.0
27
TraesCS3B01G325100
chr3A
94.744
704
26
5
8324
9020
519244959
519244260
0.000000e+00
1085.0
28
TraesCS3B01G325100
chr3A
91.055
559
29
9
1071
1617
519251572
519251023
0.000000e+00
736.0
29
TraesCS3B01G325100
chr3A
90.214
562
34
10
1577
2126
519251117
519250565
0.000000e+00
713.0
30
TraesCS3B01G325100
chr3A
93.275
342
15
2
7926
8262
519245321
519244983
1.890000e-136
497.0
31
TraesCS3B01G325100
chr3A
83.521
443
64
2
5782
6218
519251119
519250680
1.180000e-108
405.0
32
TraesCS3B01G325100
chr3A
89.000
300
29
4
4125
4423
519249098
519248802
1.550000e-97
368.0
33
TraesCS3B01G325100
chr3A
86.145
332
36
5
5931
6253
519254876
519254546
5.610000e-92
350.0
34
TraesCS3B01G325100
chr3A
93.659
205
12
1
9563
9767
519243780
519243577
1.230000e-78
305.0
35
TraesCS3B01G325100
chr3A
78.499
493
80
14
1577
2053
519255038
519254556
5.730000e-77
300.0
36
TraesCS3B01G325100
chr3A
87.333
150
16
1
1198
1347
519251397
519251251
1.690000e-37
169.0
37
TraesCS3B01G325100
chr3A
74.229
454
59
35
5433
5863
519247880
519247462
4.760000e-28
137.0
38
TraesCS3B01G325100
chr3A
84.286
140
10
5
5367
5494
519247820
519247681
1.030000e-24
126.0
39
TraesCS3B01G325100
chr3A
91.111
45
2
1
767
809
519255543
519255499
1.060000e-04
60.2
40
TraesCS3B01G325100
chr2B
82.625
800
90
21
2369
3156
781532627
781531865
0.000000e+00
662.0
41
TraesCS3B01G325100
chr2B
84.281
299
40
3
3329
3620
781531540
781531242
1.610000e-72
285.0
42
TraesCS3B01G325100
chr2B
89.116
147
16
0
3185
3331
781531865
781531719
6.020000e-42
183.0
43
TraesCS3B01G325100
chr6B
89.412
255
9
6
2938
3184
707528126
707527882
1.230000e-78
305.0
44
TraesCS3B01G325100
chr6B
100.000
30
0
0
2373
2402
563127576
563127547
1.000000e-03
56.5
45
TraesCS3B01G325100
chr1B
80.758
343
50
10
6768
7096
580622544
580622884
4.530000e-63
254.0
46
TraesCS3B01G325100
chr1B
87.342
79
10
0
9682
9760
514823648
514823726
3.760000e-14
91.6
47
TraesCS3B01G325100
chr1D
80.702
342
50
11
6768
7095
429599513
429599852
1.630000e-62
252.0
48
TraesCS3B01G325100
chr4D
81.754
285
43
6
6804
7079
394967809
394968093
7.630000e-56
230.0
49
TraesCS3B01G325100
chr4D
84.286
70
11
0
7360
7429
394968274
394968343
1.760000e-07
69.4
50
TraesCS3B01G325100
chr4D
85.000
60
7
2
3680
3738
465162310
465162252
1.060000e-04
60.2
51
TraesCS3B01G325100
chr4A
81.754
285
43
6
6804
7079
76627427
76627711
7.630000e-56
230.0
52
TraesCS3B01G325100
chr4A
93.182
44
3
0
7360
7403
76627888
76627931
2.280000e-06
65.8
53
TraesCS3B01G325100
chr4B
80.135
297
50
7
6804
7091
486207201
486206905
7.680000e-51
213.0
54
TraesCS3B01G325100
chr4B
82.895
76
13
0
7360
7435
486206742
486206667
1.760000e-07
69.4
55
TraesCS3B01G325100
chr5D
83.908
87
12
2
9682
9767
319262087
319262002
2.260000e-11
82.4
56
TraesCS3B01G325100
chr5A
86.792
53
6
1
4514
4566
657391124
657391175
3.810000e-04
58.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G325100
chr3B
525989171
525998937
9766
True
8731.500000
17084
100.000000
1
9767
2
chr3B.!!$R4
9766
1
TraesCS3B01G325100
chr3B
525992725
525997415
4690
True
298.000000
459
81.754500
1523
6213
4
chr3B.!!$R5
4690
2
TraesCS3B01G325100
chr3D
400310432
400323388
12956
True
1014.766667
6946
85.686667
2
9767
12
chr3D.!!$R1
9765
3
TraesCS3B01G325100
chr3A
519243577
519255543
11966
True
661.075000
2316
87.687687
1
9767
16
chr3A.!!$R1
9766
4
TraesCS3B01G325100
chr2B
781531242
781532627
1385
True
376.666667
662
85.340667
2369
3620
3
chr2B.!!$R1
1251
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
477
3469
0.102120
CGGACTCATCTCCACAGCTC
59.898
60.0
0.00
0.00
0.00
4.09
F
1059
4092
0.029035
CGGTTACTCCATCTCCGACG
59.971
60.0
0.00
0.00
43.22
5.12
F
1179
4233
0.044092
TGAATAGCCCACCTCCTCCA
59.956
55.0
0.00
0.00
0.00
3.86
F
1504
4570
0.107654
CCCGGTGAATTCTCCTCCAC
60.108
60.0
21.11
4.80
0.00
4.02
F
1505
4571
0.107654
CCGGTGAATTCTCCTCCACC
60.108
60.0
21.11
12.12
44.08
4.61
F
6412
12095
0.179062
GCGCCATTCTCTCCTGATGT
60.179
55.0
0.00
0.00
0.00
3.06
F
6895
12636
0.250124
TGTACAAGGGCACGGTGAAG
60.250
55.0
13.29
0.00
0.00
3.02
F
7161
12912
0.387367
CCGACCGACTGACACAAGAG
60.387
60.0
0.00
0.00
0.00
2.85
F
7163
12914
0.674534
GACCGACTGACACAAGAGGT
59.325
55.0
0.00
0.00
35.53
3.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1479
4545
0.037734
GAGAATTCACCGGGGGTTGT
59.962
55.000
2.42
0.0
31.02
3.32
R
6252
11926
2.203195
GACCGGGCATATGCAGCA
60.203
61.111
28.07
0.0
44.36
4.41
R
6273
11948
0.725784
GCGTGTCAAGAATGGCGTTG
60.726
55.000
0.00
0.0
32.34
4.10
R
6625
12362
0.240945
AATCCGCTGGCACGAAAAAG
59.759
50.000
10.33
0.0
34.06
2.27
R
6797
12538
2.483745
CAGCTCGTCGTAGCCGAA
59.516
61.111
11.45
0.0
37.54
4.30
R
7701
13495
0.032403
CGGTGGCGTAATATTCCGGA
59.968
55.000
0.00
0.0
35.25
5.14
R
7903
13699
0.108138
GGCGCAACCATCTCAGTACT
60.108
55.000
10.83
0.0
38.86
2.73
R
8333
14136
0.110464
GAGCGAGTCACTTTGCTTGC
60.110
55.000
6.92
0.0
41.24
4.01
R
8785
14595
0.174845
TTGATCACCCGCTCGTAAGG
59.825
55.000
0.00
0.0
38.47
2.69
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
49
3013
7.283329
AGATGATAGATGCATGCATGATACAT
58.717
34.615
36.73
29.82
36.70
2.29
71
3038
7.414436
ACATATGCTCGTGCGTATTTTAAAAT
58.586
30.769
18.88
17.18
45.99
1.82
231
3223
6.115448
ACTACTCTTAGTCACCAATGCTTT
57.885
37.500
0.00
0.00
32.67
3.51
234
3226
5.865085
ACTCTTAGTCACCAATGCTTTGTA
58.135
37.500
11.03
0.00
0.00
2.41
276
3268
3.655777
TCTTTCTCCCACCCATGTTAGTT
59.344
43.478
0.00
0.00
0.00
2.24
308
3300
0.176680
CTGGCCTCATAGTGTTCGCT
59.823
55.000
3.32
0.00
0.00
4.93
318
3310
0.396435
AGTGTTCGCTTCACCCATGA
59.604
50.000
0.00
0.00
36.58
3.07
322
3314
0.534873
TTCGCTTCACCCATGATCGA
59.465
50.000
0.00
0.00
37.98
3.59
388
3380
2.475466
CGAGCCTCTACGCCCGTTA
61.475
63.158
0.00
0.00
0.00
3.18
432
3424
1.708551
CCTAAAAACCACTCCTCCCCA
59.291
52.381
0.00
0.00
0.00
4.96
455
3447
2.679996
GCACCCCCACCATCAACC
60.680
66.667
0.00
0.00
0.00
3.77
456
3448
2.037208
CACCCCCACCATCAACCC
59.963
66.667
0.00
0.00
0.00
4.11
465
3457
2.264480
CATCAACCCGCGGACTCA
59.736
61.111
30.73
8.15
0.00
3.41
474
3466
1.226802
CGCGGACTCATCTCCACAG
60.227
63.158
0.00
0.00
0.00
3.66
475
3467
1.520342
GCGGACTCATCTCCACAGC
60.520
63.158
0.00
0.00
0.00
4.40
476
3468
1.954362
GCGGACTCATCTCCACAGCT
61.954
60.000
0.00
0.00
0.00
4.24
477
3469
0.102120
CGGACTCATCTCCACAGCTC
59.898
60.000
0.00
0.00
0.00
4.09
478
3470
1.189752
GGACTCATCTCCACAGCTCA
58.810
55.000
0.00
0.00
0.00
4.26
479
3471
1.134848
GGACTCATCTCCACAGCTCAC
60.135
57.143
0.00
0.00
0.00
3.51
480
3472
0.529833
ACTCATCTCCACAGCTCACG
59.470
55.000
0.00
0.00
0.00
4.35
603
3601
1.974265
TGCATCTTGACCGAAACCAA
58.026
45.000
0.00
0.00
0.00
3.67
604
3602
2.302260
TGCATCTTGACCGAAACCAAA
58.698
42.857
0.00
0.00
0.00
3.28
605
3603
2.890311
TGCATCTTGACCGAAACCAAAT
59.110
40.909
0.00
0.00
0.00
2.32
606
3604
3.320541
TGCATCTTGACCGAAACCAAATT
59.679
39.130
0.00
0.00
0.00
1.82
609
3607
5.107491
GCATCTTGACCGAAACCAAATTTTC
60.107
40.000
0.00
0.00
32.92
2.29
615
3613
7.066374
TGACCGAAACCAAATTTTCTTTTTG
57.934
32.000
0.00
0.00
33.93
2.44
698
3703
3.071167
GGCCCGGTCAATCTTATCTAACT
59.929
47.826
0.00
0.00
0.00
2.24
704
3709
6.041751
CCGGTCAATCTTATCTAACTAACCCT
59.958
42.308
0.00
0.00
0.00
4.34
764
3772
3.632604
GCCTATTCTTTTACAGAAGCCCC
59.367
47.826
0.00
0.00
45.11
5.80
810
3823
2.767505
CTTGAACCCAGTAAGCGAAGT
58.232
47.619
0.00
0.00
0.00
3.01
836
3849
3.598019
GAAGAATTCTGCATGGCCAAA
57.402
42.857
10.96
0.00
43.23
3.28
837
3850
3.256558
GAAGAATTCTGCATGGCCAAAC
58.743
45.455
10.96
5.25
43.23
2.93
838
3851
2.532843
AGAATTCTGCATGGCCAAACT
58.467
42.857
10.96
0.00
0.00
2.66
839
3852
3.700538
AGAATTCTGCATGGCCAAACTA
58.299
40.909
10.96
0.00
0.00
2.24
840
3853
4.088634
AGAATTCTGCATGGCCAAACTAA
58.911
39.130
10.96
0.85
0.00
2.24
841
3854
4.159135
AGAATTCTGCATGGCCAAACTAAG
59.841
41.667
10.96
3.54
0.00
2.18
842
3855
1.176527
TCTGCATGGCCAAACTAAGC
58.823
50.000
10.96
8.13
0.00
3.09
843
3856
0.889994
CTGCATGGCCAAACTAAGCA
59.110
50.000
10.96
12.50
0.00
3.91
844
3857
1.273048
CTGCATGGCCAAACTAAGCAA
59.727
47.619
10.96
0.00
0.00
3.91
845
3858
1.690893
TGCATGGCCAAACTAAGCAAA
59.309
42.857
10.96
0.00
0.00
3.68
846
3859
2.068519
GCATGGCCAAACTAAGCAAAC
58.931
47.619
10.96
0.00
0.00
2.93
847
3860
2.687370
CATGGCCAAACTAAGCAAACC
58.313
47.619
10.96
0.00
0.00
3.27
848
3861
1.044611
TGGCCAAACTAAGCAAACCC
58.955
50.000
0.61
0.00
0.00
4.11
895
3922
3.370103
CCGTACTGAGTCTTCTCCTCTCT
60.370
52.174
0.00
0.00
39.75
3.10
915
3942
1.956869
TCTCCTCTCTTTGCCCATCA
58.043
50.000
0.00
0.00
0.00
3.07
921
3948
4.345257
TCCTCTCTTTGCCCATCAGTATAC
59.655
45.833
0.00
0.00
0.00
1.47
924
3951
6.212388
CCTCTCTTTGCCCATCAGTATACTAT
59.788
42.308
4.74
0.00
0.00
2.12
963
3993
3.818773
GCCTTGCTCACAGTTAAACCTTA
59.181
43.478
0.00
0.00
0.00
2.69
1047
4080
3.698820
GGGTCGCCACCGGTTACT
61.699
66.667
2.97
0.00
44.91
2.24
1048
4081
2.125793
GGTCGCCACCGGTTACTC
60.126
66.667
2.97
0.00
31.06
2.59
1049
4082
2.125793
GTCGCCACCGGTTACTCC
60.126
66.667
2.97
0.00
34.56
3.85
1050
4083
2.601067
TCGCCACCGGTTACTCCA
60.601
61.111
2.97
0.00
35.57
3.86
1051
4084
1.985662
TCGCCACCGGTTACTCCAT
60.986
57.895
2.97
0.00
35.57
3.41
1052
4085
1.520787
CGCCACCGGTTACTCCATC
60.521
63.158
2.97
0.00
35.57
3.51
1053
4086
1.905512
GCCACCGGTTACTCCATCT
59.094
57.895
2.97
0.00
35.57
2.90
1054
4087
0.179081
GCCACCGGTTACTCCATCTC
60.179
60.000
2.97
0.00
35.57
2.75
1055
4088
0.464452
CCACCGGTTACTCCATCTCC
59.536
60.000
2.97
0.00
35.57
3.71
1056
4089
0.102481
CACCGGTTACTCCATCTCCG
59.898
60.000
2.97
0.00
40.72
4.63
1057
4090
0.033796
ACCGGTTACTCCATCTCCGA
60.034
55.000
0.00
0.00
43.22
4.55
1058
4091
0.384669
CCGGTTACTCCATCTCCGAC
59.615
60.000
0.00
0.00
43.22
4.79
1059
4092
0.029035
CGGTTACTCCATCTCCGACG
59.971
60.000
0.00
0.00
43.22
5.12
1060
4093
0.248949
GGTTACTCCATCTCCGACGC
60.249
60.000
0.00
0.00
35.97
5.19
1061
4094
0.248949
GTTACTCCATCTCCGACGCC
60.249
60.000
0.00
0.00
0.00
5.68
1062
4095
1.721664
TTACTCCATCTCCGACGCCG
61.722
60.000
0.00
0.00
0.00
6.46
1063
4096
4.933064
CTCCATCTCCGACGCCGC
62.933
72.222
0.00
0.00
0.00
6.53
1069
4102
4.124351
CTCCGACGCCGCCTGTTA
62.124
66.667
0.00
0.00
0.00
2.41
1070
4103
4.424566
TCCGACGCCGCCTGTTAC
62.425
66.667
0.00
0.00
0.00
2.50
1071
4104
4.728102
CCGACGCCGCCTGTTACA
62.728
66.667
0.00
0.00
0.00
2.41
1072
4105
3.475774
CGACGCCGCCTGTTACAC
61.476
66.667
0.00
0.00
0.00
2.90
1073
4106
3.116531
GACGCCGCCTGTTACACC
61.117
66.667
0.00
0.00
0.00
4.16
1074
4107
3.869473
GACGCCGCCTGTTACACCA
62.869
63.158
0.00
0.00
0.00
4.17
1179
4233
0.044092
TGAATAGCCCACCTCCTCCA
59.956
55.000
0.00
0.00
0.00
3.86
1196
4250
4.530553
TCCTCCAGACACTAGCATGTTTAA
59.469
41.667
0.00
0.00
31.24
1.52
1245
4302
3.787001
CCTCCGGAAGCCACTCCC
61.787
72.222
5.23
0.00
31.03
4.30
1280
4337
1.990060
CATCACCACCTCCTCCGGT
60.990
63.158
0.00
0.00
37.93
5.28
1290
4347
2.088674
CTCCTCCGGTAGCCATTCCG
62.089
65.000
0.00
0.00
45.42
4.30
1324
4381
2.187946
CATCACCACCTCCTCCGC
59.812
66.667
0.00
0.00
0.00
5.54
1326
4383
3.625632
ATCACCACCTCCTCCGCCT
62.626
63.158
0.00
0.00
0.00
5.52
1327
4384
3.775654
CACCACCTCCTCCGCCTC
61.776
72.222
0.00
0.00
0.00
4.70
1398
4455
2.749621
GGTAGCAATTCCACCTTCACTG
59.250
50.000
0.00
0.00
0.00
3.66
1465
4531
0.861837
CATCGTAAATCCTCCAGCGC
59.138
55.000
0.00
0.00
0.00
5.92
1467
4533
2.237751
CGTAAATCCTCCAGCGCCG
61.238
63.158
2.29
0.00
0.00
6.46
1470
4536
1.618876
TAAATCCTCCAGCGCCGGAA
61.619
55.000
14.48
0.00
33.65
4.30
1474
4540
4.394712
CTCCAGCGCCGGAACCTT
62.395
66.667
14.48
0.00
33.65
3.50
1478
4544
3.626924
AGCGCCGGAACCTTCAGT
61.627
61.111
5.05
0.00
0.00
3.41
1479
4545
2.263540
GCGCCGGAACCTTCAGTA
59.736
61.111
5.05
0.00
0.00
2.74
1480
4546
2.098831
GCGCCGGAACCTTCAGTAC
61.099
63.158
5.05
0.00
0.00
2.73
1495
4561
1.069775
AGTACAACCCCCGGTGAATT
58.930
50.000
0.00
0.00
35.34
2.17
1503
4569
1.271840
CCCCGGTGAATTCTCCTCCA
61.272
60.000
21.11
0.00
0.00
3.86
1504
4570
0.107654
CCCGGTGAATTCTCCTCCAC
60.108
60.000
21.11
4.80
0.00
4.02
1505
4571
0.107654
CCGGTGAATTCTCCTCCACC
60.108
60.000
21.11
12.12
44.08
4.61
1509
4575
0.909610
TGAATTCTCCTCCACCGCCT
60.910
55.000
7.05
0.00
0.00
5.52
6254
11928
3.615056
TGCGTACACATTACTGTACATGC
59.385
43.478
0.00
6.42
44.68
4.06
6261
11935
6.057533
ACACATTACTGTACATGCTGCATAT
58.942
36.000
15.78
6.75
33.14
1.78
6273
11948
2.665185
GCATATGCCCGGTCGGAC
60.665
66.667
17.26
0.00
37.50
4.79
6289
11964
1.234821
GGACAACGCCATTCTTGACA
58.765
50.000
0.00
0.00
0.00
3.58
6313
11996
0.789383
CGTGACTTTTTCCGCGATGC
60.789
55.000
8.23
0.00
38.42
3.91
6314
11997
0.454452
GTGACTTTTTCCGCGATGCC
60.454
55.000
8.23
0.00
0.00
4.40
6336
12019
1.742900
GCCATCATGTGACGTCGTCG
61.743
60.000
19.81
6.30
43.34
5.12
6364
12047
2.177977
CAACTGCAAACAACGCGTTAA
58.822
42.857
26.11
5.41
36.59
2.01
6407
12090
4.880537
CGCGCGCCATTCTCTCCT
62.881
66.667
27.72
0.00
0.00
3.69
6412
12095
0.179062
GCGCCATTCTCTCCTGATGT
60.179
55.000
0.00
0.00
0.00
3.06
6448
12131
1.005630
GACAGGCTGACAGCGACTT
60.006
57.895
23.66
5.32
43.62
3.01
6566
12266
7.066284
CCGATTTTCCATCTAGAAACTGAACAT
59.934
37.037
0.00
0.00
35.53
2.71
6569
12269
7.912056
TTTCCATCTAGAAACTGAACATCTG
57.088
36.000
0.00
0.00
30.87
2.90
6572
12272
5.518128
CCATCTAGAAACTGAACATCTGTCG
59.482
44.000
0.00
0.00
0.00
4.35
6609
12346
1.225855
GAATGTGTTGGTGCGAGTGA
58.774
50.000
0.00
0.00
0.00
3.41
6625
12362
0.924090
GTGATGAACTGACCGATCGC
59.076
55.000
10.32
0.00
0.00
4.58
6843
12584
2.721167
CGGATGGGTTCGCAGAGGA
61.721
63.158
0.00
0.00
38.43
3.71
6895
12636
0.250124
TGTACAAGGGCACGGTGAAG
60.250
55.000
13.29
0.00
0.00
3.02
7084
12825
0.471211
ACAAGACCCTCGAGTCCCAA
60.471
55.000
12.31
0.00
37.49
4.12
7112
12853
1.079681
GGTACGCACACCCATCGAA
60.080
57.895
0.00
0.00
31.91
3.71
7143
12894
0.673985
GTTTTGGAAGTGCTGGGACC
59.326
55.000
0.00
0.00
0.00
4.46
7147
12898
2.047179
GAAGTGCTGGGACCGACC
60.047
66.667
0.00
0.00
38.08
4.79
7148
12899
3.934391
GAAGTGCTGGGACCGACCG
62.934
68.421
0.00
0.00
40.11
4.79
7150
12901
4.736896
GTGCTGGGACCGACCGAC
62.737
72.222
0.00
0.00
40.11
4.79
7151
12902
4.988716
TGCTGGGACCGACCGACT
62.989
66.667
0.00
0.00
40.11
4.18
7152
12903
4.436998
GCTGGGACCGACCGACTG
62.437
72.222
0.00
0.00
40.11
3.51
7153
12904
2.675423
CTGGGACCGACCGACTGA
60.675
66.667
0.00
0.00
40.11
3.41
7154
12905
2.987547
TGGGACCGACCGACTGAC
60.988
66.667
0.00
0.00
40.11
3.51
7155
12906
2.987547
GGGACCGACCGACTGACA
60.988
66.667
0.00
0.00
40.11
3.58
7156
12907
2.257676
GGACCGACCGACTGACAC
59.742
66.667
0.00
0.00
0.00
3.67
7157
12908
2.558286
GGACCGACCGACTGACACA
61.558
63.158
0.00
0.00
0.00
3.72
7158
12909
1.361271
GACCGACCGACTGACACAA
59.639
57.895
0.00
0.00
0.00
3.33
7159
12910
0.663568
GACCGACCGACTGACACAAG
60.664
60.000
0.00
0.00
0.00
3.16
7160
12911
1.105167
ACCGACCGACTGACACAAGA
61.105
55.000
0.00
0.00
0.00
3.02
7161
12912
0.387367
CCGACCGACTGACACAAGAG
60.387
60.000
0.00
0.00
0.00
2.85
7162
12913
0.387367
CGACCGACTGACACAAGAGG
60.387
60.000
0.00
0.00
0.00
3.69
7163
12914
0.674534
GACCGACTGACACAAGAGGT
59.325
55.000
0.00
0.00
35.53
3.85
7164
12915
1.068741
GACCGACTGACACAAGAGGTT
59.931
52.381
0.00
0.00
33.93
3.50
7165
12916
1.202533
ACCGACTGACACAAGAGGTTG
60.203
52.381
0.00
0.00
39.82
3.77
7166
12917
1.502231
CGACTGACACAAGAGGTTGG
58.498
55.000
0.00
0.00
38.07
3.77
7167
12918
1.202533
CGACTGACACAAGAGGTTGGT
60.203
52.381
0.00
0.00
38.07
3.67
7168
12919
2.741878
CGACTGACACAAGAGGTTGGTT
60.742
50.000
0.00
0.00
38.07
3.67
7169
12920
3.279434
GACTGACACAAGAGGTTGGTTT
58.721
45.455
0.00
0.00
38.07
3.27
7170
12921
3.694566
GACTGACACAAGAGGTTGGTTTT
59.305
43.478
0.00
0.00
38.07
2.43
7171
12922
3.443681
ACTGACACAAGAGGTTGGTTTTG
59.556
43.478
0.00
0.00
38.07
2.44
7172
12923
2.757868
TGACACAAGAGGTTGGTTTTGG
59.242
45.455
0.00
0.00
38.07
3.28
7173
12924
1.480545
ACACAAGAGGTTGGTTTTGGC
59.519
47.619
0.00
0.00
38.07
4.52
7174
12925
1.756538
CACAAGAGGTTGGTTTTGGCT
59.243
47.619
0.00
0.00
38.07
4.75
7175
12926
1.756538
ACAAGAGGTTGGTTTTGGCTG
59.243
47.619
0.00
0.00
38.07
4.85
7267
13018
1.226575
CCTCGCGTATCTGCACGAA
60.227
57.895
5.77
0.00
44.69
3.85
7288
13063
6.073548
ACGAAGACTGTGAGTTCATTTCATTC
60.074
38.462
0.00
0.00
0.00
2.67
7311
13086
2.004583
TACGGATTTTGTCGCCTGAG
57.995
50.000
0.00
0.00
0.00
3.35
7313
13088
1.803289
GGATTTTGTCGCCTGAGGC
59.197
57.895
14.89
14.89
46.75
4.70
7339
13114
6.839124
TTCTGGCACTGAATATTTGAATGT
57.161
33.333
0.00
0.00
41.26
2.71
7463
13244
6.093357
GTCAAAACCCAACAACAACAATTGAT
59.907
34.615
13.59
0.00
33.57
2.57
7494
13287
7.036220
GTCTGCTTGTATCTAACTCTTGCTAA
58.964
38.462
0.00
0.00
0.00
3.09
7584
13377
5.106436
CGTAATGGGAACTTTTGGGTAAGAC
60.106
44.000
0.00
0.00
0.00
3.01
7585
13378
2.853705
TGGGAACTTTTGGGTAAGACG
58.146
47.619
0.00
0.00
0.00
4.18
7586
13379
2.156917
GGGAACTTTTGGGTAAGACGG
58.843
52.381
0.00
0.00
0.00
4.79
7587
13380
2.487805
GGGAACTTTTGGGTAAGACGGT
60.488
50.000
0.00
0.00
0.00
4.83
7588
13381
3.216800
GGAACTTTTGGGTAAGACGGTT
58.783
45.455
0.00
0.00
0.00
4.44
7589
13382
3.004002
GGAACTTTTGGGTAAGACGGTTG
59.996
47.826
0.00
0.00
0.00
3.77
7591
13384
4.094830
ACTTTTGGGTAAGACGGTTGAT
57.905
40.909
0.00
0.00
0.00
2.57
7593
13386
5.623169
ACTTTTGGGTAAGACGGTTGATTA
58.377
37.500
0.00
0.00
0.00
1.75
7594
13387
5.471116
ACTTTTGGGTAAGACGGTTGATTAC
59.529
40.000
0.00
4.29
0.00
1.89
7595
13388
4.895668
TTGGGTAAGACGGTTGATTACT
57.104
40.909
9.95
0.00
31.53
2.24
7596
13389
5.999205
TTGGGTAAGACGGTTGATTACTA
57.001
39.130
9.95
1.52
31.53
1.82
7597
13390
5.329035
TGGGTAAGACGGTTGATTACTAC
57.671
43.478
9.95
6.23
31.53
2.73
7598
13391
5.018809
TGGGTAAGACGGTTGATTACTACT
58.981
41.667
9.95
0.00
31.53
2.57
7599
13392
5.126061
TGGGTAAGACGGTTGATTACTACTC
59.874
44.000
9.95
0.00
31.53
2.59
7600
13393
5.451103
GGGTAAGACGGTTGATTACTACTCC
60.451
48.000
9.95
0.00
31.53
3.85
7605
13398
5.821995
AGACGGTTGATTACTACTCCTAGTC
59.178
44.000
0.00
0.00
34.79
2.59
7606
13399
4.886489
ACGGTTGATTACTACTCCTAGTCC
59.114
45.833
0.00
0.00
34.79
3.85
7613
13406
7.284074
TGATTACTACTCCTAGTCCTCAGAAG
58.716
42.308
0.00
0.00
34.79
2.85
7630
13423
3.223589
GCCCAACAAACTGCCCGT
61.224
61.111
0.00
0.00
0.00
5.28
7672
13466
5.239306
ACATGTGGACTAATCTTGTGTTGTG
59.761
40.000
0.00
0.00
0.00
3.33
7673
13467
4.776349
TGTGGACTAATCTTGTGTTGTGT
58.224
39.130
0.00
0.00
0.00
3.72
7674
13468
4.814234
TGTGGACTAATCTTGTGTTGTGTC
59.186
41.667
0.00
0.00
0.00
3.67
7678
13472
6.375736
TGGACTAATCTTGTGTTGTGTCAAAA
59.624
34.615
0.00
0.00
0.00
2.44
7679
13473
6.691388
GGACTAATCTTGTGTTGTGTCAAAAC
59.309
38.462
0.00
0.00
0.00
2.43
7682
13476
7.968405
ACTAATCTTGTGTTGTGTCAAAACTTC
59.032
33.333
7.41
1.97
0.00
3.01
7683
13477
5.054390
TCTTGTGTTGTGTCAAAACTTCC
57.946
39.130
7.41
0.00
0.00
3.46
7701
13495
3.619900
TCCATCTACAGATACCTGGCT
57.380
47.619
0.00
0.00
44.60
4.75
7896
13692
5.615925
ACAAGGAAGAACTGTTAGTGAGT
57.384
39.130
0.00
0.00
0.00
3.41
7897
13693
5.360591
ACAAGGAAGAACTGTTAGTGAGTG
58.639
41.667
0.00
0.00
0.00
3.51
7898
13694
5.104900
ACAAGGAAGAACTGTTAGTGAGTGT
60.105
40.000
0.00
0.00
0.00
3.55
7899
13695
5.203060
AGGAAGAACTGTTAGTGAGTGTC
57.797
43.478
0.00
0.00
0.00
3.67
7900
13696
4.039366
AGGAAGAACTGTTAGTGAGTGTCC
59.961
45.833
0.00
0.00
0.00
4.02
7901
13697
4.039366
GGAAGAACTGTTAGTGAGTGTCCT
59.961
45.833
0.00
0.00
0.00
3.85
7902
13698
5.453480
GGAAGAACTGTTAGTGAGTGTCCTT
60.453
44.000
0.00
0.00
0.00
3.36
7903
13699
6.239232
GGAAGAACTGTTAGTGAGTGTCCTTA
60.239
42.308
0.00
0.00
0.00
2.69
7904
13700
6.334102
AGAACTGTTAGTGAGTGTCCTTAG
57.666
41.667
0.00
0.00
0.00
2.18
7919
13715
4.081642
TGTCCTTAGTACTGAGATGGTTGC
60.082
45.833
15.88
0.00
0.00
4.17
7926
13722
0.962356
CTGAGATGGTTGCGCCCTTT
60.962
55.000
4.18
0.00
36.04
3.11
7944
13740
5.161358
CCCTTTTAATTCCTTCTCGCAAAC
58.839
41.667
0.00
0.00
0.00
2.93
7965
13767
3.739300
ACTTATCCACTCGTGTTTGAACG
59.261
43.478
0.00
0.00
44.92
3.95
7990
13793
6.358991
AGTAGAACTGTGTAGAGTAGGATCC
58.641
44.000
2.48
2.48
0.00
3.36
8010
13813
2.679837
CCTGTTTGATCCCACTTGATCG
59.320
50.000
0.00
0.00
43.34
3.69
8013
13816
2.293677
TTGATCCCACTTGATCGTCG
57.706
50.000
0.00
0.00
43.34
5.12
8022
13825
3.364062
CACTTGATCGTCGGATGTCTAC
58.636
50.000
0.00
0.00
31.51
2.59
8180
13983
4.865761
GCCTACGACATGGCGCGA
62.866
66.667
23.72
8.65
39.71
5.87
8271
14074
1.338136
CCAATCCCCTCGCCTACAGT
61.338
60.000
0.00
0.00
0.00
3.55
8333
14136
1.209128
CCGCCGCTGTACTTCATTAG
58.791
55.000
0.00
0.00
0.00
1.73
8339
14142
2.672874
CGCTGTACTTCATTAGCAAGCA
59.327
45.455
0.00
0.00
35.98
3.91
8347
14150
4.823989
ACTTCATTAGCAAGCAAAGTGACT
59.176
37.500
0.00
0.00
0.00
3.41
8379
14182
5.755375
GTCAATGGTATGTGATCAGATCGTT
59.245
40.000
8.90
1.19
0.00
3.85
8742
14545
4.254709
TTCAGCAGGCGCACCACT
62.255
61.111
10.83
0.00
42.27
4.00
8755
14558
1.835267
ACCACTGGCAGACGTACCA
60.835
57.895
23.66
4.54
0.00
3.25
8785
14595
4.493872
GGTGACGAGACGTACTGAATACTC
60.494
50.000
0.00
0.00
41.37
2.59
8786
14596
3.620374
TGACGAGACGTACTGAATACTCC
59.380
47.826
0.00
0.00
41.37
3.85
8847
14657
2.821366
GATGCTGTCGCTGTGGGG
60.821
66.667
0.00
0.00
36.97
4.96
8951
14761
5.473846
TGCGTCCATTAATTAACCACAAAGA
59.526
36.000
0.00
0.00
0.00
2.52
9043
15044
1.674322
AATCGGCCGAACAAGGGTG
60.674
57.895
34.66
0.00
0.00
4.61
9075
15076
3.037549
AGGAAATCCTCGAGAGCTCATT
58.962
45.455
17.77
2.49
44.77
2.57
9077
15078
3.181471
GGAAATCCTCGAGAGCTCATTGA
60.181
47.826
17.77
9.33
0.00
2.57
9078
15079
4.437239
GAAATCCTCGAGAGCTCATTGAA
58.563
43.478
17.77
0.00
0.00
2.69
9113
15116
4.391523
ACAAAACACACCAAAGATGCAAAC
59.608
37.500
0.00
0.00
0.00
2.93
9131
15135
4.336101
CAAACGAAAAACGCACAAGAGTA
58.664
39.130
0.00
0.00
46.94
2.59
9158
15163
2.277373
CGCCGCTAGAGTGTCGTC
60.277
66.667
0.00
0.00
0.00
4.20
9175
15180
0.458543
GTCGAGGAGAAGCGCATGAA
60.459
55.000
11.47
0.00
0.00
2.57
9193
15198
2.748058
AAAATCGCCGCCAGGAGTGT
62.748
55.000
0.00
0.00
41.02
3.55
9219
15224
0.179127
CCTGCACTCATCGACGATGT
60.179
55.000
31.06
15.11
40.55
3.06
9221
15226
0.179137
TGCACTCATCGACGATGTCC
60.179
55.000
31.06
19.62
40.55
4.02
9585
15591
4.115199
GTGGCGCTCCAAGGGGAT
62.115
66.667
7.64
0.00
45.53
3.85
9608
15614
4.644234
TGAAGATTTTCACCAAGAGTGCAA
59.356
37.500
0.00
0.00
46.81
4.08
9678
15684
8.710835
TTATGTGAGTTGCGATCTTTATTGTA
57.289
30.769
0.00
0.00
0.00
2.41
9691
15697
7.592533
CGATCTTTATTGTAATCATGGGCTTTG
59.407
37.037
0.00
0.00
0.00
2.77
9707
15713
7.775053
TGGGCTTTGTTAATAGAGTTGAATT
57.225
32.000
0.00
0.00
0.00
2.17
9726
15732
5.353956
TGAATTATGTGATGTGTTCCCTTCG
59.646
40.000
0.00
0.00
0.00
3.79
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
1.606668
GTTGGTTTGAGATTCGTGGCA
59.393
47.619
0.00
0.00
0.00
4.92
1
2
1.606668
TGTTGGTTTGAGATTCGTGGC
59.393
47.619
0.00
0.00
0.00
5.01
2
3
3.980646
TTGTTGGTTTGAGATTCGTGG
57.019
42.857
0.00
0.00
0.00
4.94
3
4
6.480524
TCTATTGTTGGTTTGAGATTCGTG
57.519
37.500
0.00
0.00
0.00
4.35
4
5
6.878923
TCATCTATTGTTGGTTTGAGATTCGT
59.121
34.615
0.00
0.00
0.00
3.85
49
3013
8.819015
TCTTATTTTAAAATACGCACGAGCATA
58.181
29.630
18.16
0.00
42.27
3.14
129
3098
9.846248
GTGCTAATCATGTCAAGTTTAGAAAAT
57.154
29.630
9.17
0.00
0.00
1.82
133
3102
7.764443
GGTAGTGCTAATCATGTCAAGTTTAGA
59.236
37.037
9.17
0.00
0.00
2.10
135
3104
6.821665
GGGTAGTGCTAATCATGTCAAGTTTA
59.178
38.462
0.00
0.00
0.00
2.01
214
3206
7.144722
TGAATACAAAGCATTGGTGACTAAG
57.855
36.000
6.62
0.00
41.01
2.18
231
3223
3.388024
CGGGGAGAAGAGGAATGAATACA
59.612
47.826
0.00
0.00
0.00
2.29
234
3226
2.436173
GACGGGGAGAAGAGGAATGAAT
59.564
50.000
0.00
0.00
0.00
2.57
276
3268
2.190313
GCCAGTGATGATGGGCGA
59.810
61.111
0.00
0.00
38.33
5.54
308
3300
1.754226
TCGACATCGATCATGGGTGAA
59.246
47.619
0.00
0.00
44.22
3.18
322
3314
2.317371
ATAGAGAGGGGCATCGACAT
57.683
50.000
0.00
0.00
0.00
3.06
384
3376
0.854062
TTGGCAACGACGACTTAACG
59.146
50.000
0.00
0.00
42.51
3.18
388
3380
0.935196
GACTTTGGCAACGACGACTT
59.065
50.000
10.99
0.00
42.51
3.01
455
3447
2.105128
GTGGAGATGAGTCCGCGG
59.895
66.667
22.12
22.12
39.81
6.46
465
3457
2.581354
GCCGTGAGCTGTGGAGAT
59.419
61.111
0.00
0.00
38.99
2.75
528
3521
2.048503
GTCCGAGGGTTGACCGTG
60.049
66.667
0.00
0.00
46.96
4.94
562
3555
1.742761
CTCAAAGATGCGGACATGGT
58.257
50.000
0.00
0.00
36.35
3.55
603
3601
3.312146
CGGGCAACTGCAAAAAGAAAATT
59.688
39.130
3.76
0.00
44.36
1.82
604
3602
2.871633
CGGGCAACTGCAAAAAGAAAAT
59.128
40.909
3.76
0.00
44.36
1.82
605
3603
2.093973
TCGGGCAACTGCAAAAAGAAAA
60.094
40.909
3.76
0.00
45.18
2.29
606
3604
1.478510
TCGGGCAACTGCAAAAAGAAA
59.521
42.857
3.76
0.00
45.18
2.52
609
3607
1.933247
TTTCGGGCAACTGCAAAAAG
58.067
45.000
3.76
0.00
45.18
2.27
615
3613
3.569250
TTCTATTTTTCGGGCAACTGC
57.431
42.857
0.00
0.00
45.18
4.40
658
3662
1.266718
GCCAAAGTCAACGAGCATGAA
59.733
47.619
0.00
0.00
0.00
2.57
662
3666
1.896660
GGGCCAAAGTCAACGAGCA
60.897
57.895
4.39
0.00
0.00
4.26
698
3703
6.791847
TCTAGTATCCACTATCCAGGGTTA
57.208
41.667
0.00
0.00
36.66
2.85
764
3772
6.571154
CGACAGCAACATATCATACGAATTTG
59.429
38.462
0.00
0.00
0.00
2.32
806
3819
6.458478
CCATGCAGAATTCTTCTCATGACTTC
60.458
42.308
27.24
2.77
41.97
3.01
810
3823
3.630769
GCCATGCAGAATTCTTCTCATGA
59.369
43.478
27.24
0.00
41.97
3.07
835
3848
3.421844
GATGAGGTGGGTTTGCTTAGTT
58.578
45.455
0.00
0.00
0.00
2.24
836
3849
2.615493
CGATGAGGTGGGTTTGCTTAGT
60.615
50.000
0.00
0.00
0.00
2.24
837
3850
2.009774
CGATGAGGTGGGTTTGCTTAG
58.990
52.381
0.00
0.00
0.00
2.18
838
3851
1.948611
GCGATGAGGTGGGTTTGCTTA
60.949
52.381
0.00
0.00
0.00
3.09
839
3852
1.244019
GCGATGAGGTGGGTTTGCTT
61.244
55.000
0.00
0.00
0.00
3.91
840
3853
1.675641
GCGATGAGGTGGGTTTGCT
60.676
57.895
0.00
0.00
0.00
3.91
841
3854
0.392461
TAGCGATGAGGTGGGTTTGC
60.392
55.000
0.00
0.00
0.00
3.68
842
3855
1.737793
GTTAGCGATGAGGTGGGTTTG
59.262
52.381
0.00
0.00
0.00
2.93
843
3856
1.628846
AGTTAGCGATGAGGTGGGTTT
59.371
47.619
0.00
0.00
0.00
3.27
844
3857
1.066143
CAGTTAGCGATGAGGTGGGTT
60.066
52.381
0.00
0.00
0.00
4.11
845
3858
0.537188
CAGTTAGCGATGAGGTGGGT
59.463
55.000
0.00
0.00
0.00
4.51
846
3859
0.811616
GCAGTTAGCGATGAGGTGGG
60.812
60.000
0.00
0.00
0.00
4.61
847
3860
2.682893
GCAGTTAGCGATGAGGTGG
58.317
57.895
0.00
0.00
0.00
4.61
880
3907
4.080299
AGAGGAGAAGAGAGGAGAAGACTC
60.080
50.000
0.00
0.00
41.94
3.36
895
3922
2.238144
CTGATGGGCAAAGAGAGGAGAA
59.762
50.000
0.00
0.00
0.00
2.87
944
3974
4.277423
GCCTTAAGGTTTAACTGTGAGCAA
59.723
41.667
22.55
0.00
37.57
3.91
1042
4075
0.248949
GGCGTCGGAGATGGAGTAAC
60.249
60.000
0.00
0.00
45.11
2.50
1043
4076
1.721664
CGGCGTCGGAGATGGAGTAA
61.722
60.000
0.00
0.00
45.11
2.24
1044
4077
2.184830
CGGCGTCGGAGATGGAGTA
61.185
63.158
0.00
0.00
45.11
2.59
1045
4078
3.518998
CGGCGTCGGAGATGGAGT
61.519
66.667
0.00
0.00
45.11
3.85
1046
4079
4.933064
GCGGCGTCGGAGATGGAG
62.933
72.222
13.05
0.00
45.11
3.86
1052
4085
4.124351
TAACAGGCGGCGTCGGAG
62.124
66.667
20.18
9.45
36.79
4.63
1053
4086
4.424566
GTAACAGGCGGCGTCGGA
62.425
66.667
20.18
0.00
36.79
4.55
1054
4087
4.728102
TGTAACAGGCGGCGTCGG
62.728
66.667
13.05
10.69
36.79
4.79
1055
4088
3.475774
GTGTAACAGGCGGCGTCG
61.476
66.667
4.29
4.29
36.32
5.12
1056
4089
3.116531
GGTGTAACAGGCGGCGTC
61.117
66.667
1.71
1.71
39.98
5.19
1057
4090
3.876589
CTGGTGTAACAGGCGGCGT
62.877
63.158
9.37
1.45
39.98
5.68
1058
4091
3.118454
CTGGTGTAACAGGCGGCG
61.118
66.667
0.51
0.51
39.98
6.46
1059
4092
0.320946
TAACTGGTGTAACAGGCGGC
60.321
55.000
0.00
0.00
42.75
6.53
1060
4093
1.001633
AGTAACTGGTGTAACAGGCGG
59.998
52.381
1.56
0.00
42.75
6.13
1061
4094
2.334838
GAGTAACTGGTGTAACAGGCG
58.665
52.381
1.56
0.00
42.75
5.52
1062
4095
2.038033
TGGAGTAACTGGTGTAACAGGC
59.962
50.000
1.56
0.00
42.75
4.85
1063
4096
4.223032
AGATGGAGTAACTGGTGTAACAGG
59.777
45.833
1.56
0.00
42.75
4.00
1064
4097
5.407407
AGATGGAGTAACTGGTGTAACAG
57.593
43.478
0.00
0.00
44.03
3.16
1065
4098
4.222145
GGAGATGGAGTAACTGGTGTAACA
59.778
45.833
0.00
0.00
39.98
2.41
1066
4099
4.677250
CGGAGATGGAGTAACTGGTGTAAC
60.677
50.000
0.00
0.00
0.00
2.50
1067
4100
3.446161
CGGAGATGGAGTAACTGGTGTAA
59.554
47.826
0.00
0.00
0.00
2.41
1068
4101
3.021695
CGGAGATGGAGTAACTGGTGTA
58.978
50.000
0.00
0.00
0.00
2.90
1069
4102
1.825474
CGGAGATGGAGTAACTGGTGT
59.175
52.381
0.00
0.00
0.00
4.16
1070
4103
2.100197
TCGGAGATGGAGTAACTGGTG
58.900
52.381
0.00
0.00
0.00
4.17
1071
4104
2.100989
GTCGGAGATGGAGTAACTGGT
58.899
52.381
0.00
0.00
40.67
4.00
1072
4105
1.065701
CGTCGGAGATGGAGTAACTGG
59.934
57.143
0.00
0.00
40.43
4.00
1073
4106
1.534175
GCGTCGGAGATGGAGTAACTG
60.534
57.143
0.00
0.00
45.11
3.16
1074
4107
0.739561
GCGTCGGAGATGGAGTAACT
59.260
55.000
0.00
0.00
45.11
2.24
1155
4209
1.204146
GAGGTGGGCTATTCACTGGA
58.796
55.000
0.00
0.00
35.61
3.86
1179
4233
3.871594
GCGGATTAAACATGCTAGTGTCT
59.128
43.478
0.00
0.00
0.00
3.41
1196
4250
2.060980
GTCACTGGAGGAGGCGGAT
61.061
63.158
0.00
0.00
0.00
4.18
1245
4302
3.775654
GGAGTCACAGGAGGCGGG
61.776
72.222
0.00
0.00
0.00
6.13
1290
4347
1.043673
ATGGAGTCACCGGAGTAGGC
61.044
60.000
9.46
0.00
42.61
3.93
1329
4386
1.300481
GAGAAGGCGGAATTGCTACC
58.700
55.000
0.00
0.00
34.52
3.18
1330
4387
1.300481
GGAGAAGGCGGAATTGCTAC
58.700
55.000
0.00
0.00
34.52
3.58
1331
4388
0.179084
CGGAGAAGGCGGAATTGCTA
60.179
55.000
0.00
0.00
34.52
3.49
1398
4455
2.063378
AGCTGCTACCTGAGGAGGC
61.063
63.158
4.99
9.53
43.67
4.70
1465
4531
1.609841
GGGTTGTACTGAAGGTTCCGG
60.610
57.143
0.00
0.00
0.00
5.14
1467
4533
1.271762
GGGGGTTGTACTGAAGGTTCC
60.272
57.143
0.00
0.00
0.00
3.62
1470
4536
1.486145
CCGGGGGTTGTACTGAAGGT
61.486
60.000
0.00
0.00
0.00
3.50
1474
4540
0.763604
TTCACCGGGGGTTGTACTGA
60.764
55.000
2.42
0.00
31.02
3.41
1478
4544
1.279846
GAGAATTCACCGGGGGTTGTA
59.720
52.381
2.42
0.00
31.02
2.41
1479
4545
0.037734
GAGAATTCACCGGGGGTTGT
59.962
55.000
2.42
0.00
31.02
3.32
1480
4546
0.679960
GGAGAATTCACCGGGGGTTG
60.680
60.000
2.42
0.00
31.02
3.77
1495
4561
3.992641
TGGAGGCGGTGGAGGAGA
61.993
66.667
0.00
0.00
0.00
3.71
6252
11926
2.203195
GACCGGGCATATGCAGCA
60.203
61.111
28.07
0.00
44.36
4.41
6254
11928
2.666190
CCGACCGGGCATATGCAG
60.666
66.667
28.07
20.21
44.36
4.41
6273
11948
0.725784
GCGTGTCAAGAATGGCGTTG
60.726
55.000
0.00
0.00
32.34
4.10
6289
11964
2.629763
GGAAAAAGTCACGCGCGT
59.370
55.556
32.73
32.73
0.00
6.01
6407
12090
2.030401
GCACCGTGCCGTAACATCA
61.030
57.895
12.80
0.00
37.42
3.07
6483
12166
2.450609
AATCAAGTCGGTTACGTGCT
57.549
45.000
0.00
0.00
41.85
4.40
6484
12167
3.060363
CACTAATCAAGTCGGTTACGTGC
59.940
47.826
0.00
0.00
41.85
5.34
6491
12174
1.899814
TGGAGCACTAATCAAGTCGGT
59.100
47.619
0.00
0.00
35.76
4.69
6609
12346
2.386661
AAAGCGATCGGTCAGTTCAT
57.613
45.000
21.51
0.00
0.00
2.57
6625
12362
0.240945
AATCCGCTGGCACGAAAAAG
59.759
50.000
10.33
0.00
34.06
2.27
6797
12538
2.483745
CAGCTCGTCGTAGCCGAA
59.516
61.111
11.45
0.00
37.54
4.30
6824
12565
2.579201
CTCTGCGAACCCATCCGT
59.421
61.111
0.00
0.00
0.00
4.69
6829
12570
1.671742
GTTCTCCTCTGCGAACCCA
59.328
57.895
0.00
0.00
34.83
4.51
6838
12579
1.614824
CCCCAGCAGGTTCTCCTCT
60.615
63.158
0.00
0.00
43.07
3.69
7084
12825
3.918977
TGCGTACCGTGGTGCAGT
61.919
61.111
7.88
0.00
32.73
4.40
7103
12844
0.687354
AACAGAGCAGTTCGATGGGT
59.313
50.000
0.00
0.00
0.00
4.51
7105
12846
1.081892
CCAACAGAGCAGTTCGATGG
58.918
55.000
0.00
0.00
0.00
3.51
7108
12849
2.325583
AAACCAACAGAGCAGTTCGA
57.674
45.000
0.00
0.00
0.00
3.71
7110
12851
2.687935
TCCAAAACCAACAGAGCAGTTC
59.312
45.455
0.00
0.00
0.00
3.01
7112
12853
2.435372
TCCAAAACCAACAGAGCAGT
57.565
45.000
0.00
0.00
0.00
4.40
7143
12894
0.387367
CCTCTTGTGTCAGTCGGTCG
60.387
60.000
0.00
0.00
0.00
4.79
7147
12898
1.202533
ACCAACCTCTTGTGTCAGTCG
60.203
52.381
0.00
0.00
0.00
4.18
7148
12899
2.622064
ACCAACCTCTTGTGTCAGTC
57.378
50.000
0.00
0.00
0.00
3.51
7150
12901
3.181487
CCAAAACCAACCTCTTGTGTCAG
60.181
47.826
0.00
0.00
0.00
3.51
7151
12902
2.757868
CCAAAACCAACCTCTTGTGTCA
59.242
45.455
0.00
0.00
0.00
3.58
7152
12903
2.481276
GCCAAAACCAACCTCTTGTGTC
60.481
50.000
0.00
0.00
0.00
3.67
7153
12904
1.480545
GCCAAAACCAACCTCTTGTGT
59.519
47.619
0.00
0.00
0.00
3.72
7154
12905
1.756538
AGCCAAAACCAACCTCTTGTG
59.243
47.619
0.00
0.00
0.00
3.33
7155
12906
1.756538
CAGCCAAAACCAACCTCTTGT
59.243
47.619
0.00
0.00
0.00
3.16
7156
12907
1.756538
ACAGCCAAAACCAACCTCTTG
59.243
47.619
0.00
0.00
0.00
3.02
7157
12908
1.756538
CACAGCCAAAACCAACCTCTT
59.243
47.619
0.00
0.00
0.00
2.85
7158
12909
1.402787
CACAGCCAAAACCAACCTCT
58.597
50.000
0.00
0.00
0.00
3.69
7159
12910
0.389025
CCACAGCCAAAACCAACCTC
59.611
55.000
0.00
0.00
0.00
3.85
7160
12911
0.325203
ACCACAGCCAAAACCAACCT
60.325
50.000
0.00
0.00
0.00
3.50
7161
12912
0.104120
GACCACAGCCAAAACCAACC
59.896
55.000
0.00
0.00
0.00
3.77
7162
12913
1.067060
GAGACCACAGCCAAAACCAAC
59.933
52.381
0.00
0.00
0.00
3.77
7163
12914
1.341482
TGAGACCACAGCCAAAACCAA
60.341
47.619
0.00
0.00
0.00
3.67
7164
12915
0.257328
TGAGACCACAGCCAAAACCA
59.743
50.000
0.00
0.00
0.00
3.67
7165
12916
0.954452
CTGAGACCACAGCCAAAACC
59.046
55.000
0.00
0.00
0.00
3.27
7166
12917
0.954452
CCTGAGACCACAGCCAAAAC
59.046
55.000
0.00
0.00
36.67
2.43
7167
12918
0.178992
CCCTGAGACCACAGCCAAAA
60.179
55.000
0.00
0.00
36.67
2.44
7168
12919
1.059584
TCCCTGAGACCACAGCCAAA
61.060
55.000
0.00
0.00
36.67
3.28
7169
12920
1.461268
TCCCTGAGACCACAGCCAA
60.461
57.895
0.00
0.00
36.67
4.52
7170
12921
1.915266
CTCCCTGAGACCACAGCCA
60.915
63.158
0.00
0.00
36.67
4.75
7171
12922
2.985456
CTCCCTGAGACCACAGCC
59.015
66.667
0.00
0.00
36.67
4.85
7172
12923
2.267324
GCTCCCTGAGACCACAGC
59.733
66.667
0.00
0.00
36.67
4.40
7173
12924
2.575993
CGCTCCCTGAGACCACAG
59.424
66.667
0.00
0.00
37.61
3.66
7174
12925
3.695606
GCGCTCCCTGAGACCACA
61.696
66.667
0.00
0.00
0.00
4.17
7175
12926
4.459089
GGCGCTCCCTGAGACCAC
62.459
72.222
7.64
0.00
30.87
4.16
7213
12964
4.508128
GCGATCTTCCACCGGCGA
62.508
66.667
9.30
0.00
0.00
5.54
7267
13018
6.528321
TCAGAATGAAATGAACTCACAGTCT
58.472
36.000
0.00
0.00
45.97
3.24
7288
13063
2.285220
CAGGCGACAAAATCCGTATCAG
59.715
50.000
0.00
0.00
0.00
2.90
7311
13086
2.113860
TATTCAGTGCCAGAACAGCC
57.886
50.000
0.00
0.00
0.00
4.85
7313
13088
5.885230
TCAAATATTCAGTGCCAGAACAG
57.115
39.130
0.00
0.00
0.00
3.16
7330
13105
5.713389
TGAGATCAAAGCCAGACATTCAAAT
59.287
36.000
0.00
0.00
0.00
2.32
7334
13109
3.626670
CCTGAGATCAAAGCCAGACATTC
59.373
47.826
0.00
0.00
0.00
2.67
7339
13114
2.259917
TGACCTGAGATCAAAGCCAGA
58.740
47.619
0.00
0.00
0.00
3.86
7390
13165
1.153349
GTCGAGGAGGATGTTGGCC
60.153
63.158
0.00
0.00
0.00
5.36
7503
13296
2.157305
TTGCCAGCCCAAAATCTGCG
62.157
55.000
0.00
0.00
0.00
5.18
7584
13377
5.131784
AGGACTAGGAGTAGTAATCAACCG
58.868
45.833
0.00
0.00
39.78
4.44
7585
13378
6.127793
TGAGGACTAGGAGTAGTAATCAACC
58.872
44.000
0.00
0.00
39.78
3.77
7586
13379
7.055378
TCTGAGGACTAGGAGTAGTAATCAAC
58.945
42.308
0.00
0.00
39.78
3.18
7587
13380
7.209340
TCTGAGGACTAGGAGTAGTAATCAA
57.791
40.000
0.00
0.00
39.78
2.57
7588
13381
6.826632
TCTGAGGACTAGGAGTAGTAATCA
57.173
41.667
0.00
0.00
39.78
2.57
7589
13382
6.206048
GCTTCTGAGGACTAGGAGTAGTAATC
59.794
46.154
0.00
0.00
39.78
1.75
7591
13384
5.438833
GCTTCTGAGGACTAGGAGTAGTAA
58.561
45.833
0.00
0.00
39.78
2.24
7593
13386
3.372241
GGCTTCTGAGGACTAGGAGTAGT
60.372
52.174
0.00
0.00
42.59
2.73
7594
13387
3.219281
GGCTTCTGAGGACTAGGAGTAG
58.781
54.545
0.00
0.00
0.00
2.57
7595
13388
2.091775
GGGCTTCTGAGGACTAGGAGTA
60.092
54.545
0.00
0.00
0.00
2.59
7596
13389
1.342574
GGGCTTCTGAGGACTAGGAGT
60.343
57.143
0.00
0.00
0.00
3.85
7597
13390
1.342474
TGGGCTTCTGAGGACTAGGAG
60.342
57.143
0.00
0.00
0.00
3.69
7598
13391
0.710588
TGGGCTTCTGAGGACTAGGA
59.289
55.000
0.00
0.00
0.00
2.94
7599
13392
1.208293
GTTGGGCTTCTGAGGACTAGG
59.792
57.143
0.00
0.00
0.00
3.02
7600
13393
1.902508
TGTTGGGCTTCTGAGGACTAG
59.097
52.381
0.00
0.00
0.00
2.57
7605
13398
1.610522
CAGTTTGTTGGGCTTCTGAGG
59.389
52.381
0.00
0.00
0.00
3.86
7606
13399
1.000938
GCAGTTTGTTGGGCTTCTGAG
60.001
52.381
0.00
0.00
0.00
3.35
7613
13406
3.223589
ACGGGCAGTTTGTTGGGC
61.224
61.111
0.00
0.00
0.00
5.36
7648
13441
5.239306
CACAACACAAGATTAGTCCACATGT
59.761
40.000
0.00
0.00
0.00
3.21
7672
13466
7.278868
CAGGTATCTGTAGATGGAAGTTTTGAC
59.721
40.741
4.67
0.00
36.30
3.18
7673
13467
7.331026
CAGGTATCTGTAGATGGAAGTTTTGA
58.669
38.462
4.67
0.00
36.30
2.69
7674
13468
6.540189
CCAGGTATCTGTAGATGGAAGTTTTG
59.460
42.308
1.52
0.00
39.31
2.44
7678
13472
3.643792
GCCAGGTATCTGTAGATGGAAGT
59.356
47.826
1.52
0.00
39.31
3.01
7679
13473
3.900601
AGCCAGGTATCTGTAGATGGAAG
59.099
47.826
1.52
0.00
39.31
3.46
7682
13476
2.564947
GGAGCCAGGTATCTGTAGATGG
59.435
54.545
1.52
0.32
39.31
3.51
7683
13477
2.230025
CGGAGCCAGGTATCTGTAGATG
59.770
54.545
1.52
0.00
39.31
2.90
7701
13495
0.032403
CGGTGGCGTAATATTCCGGA
59.968
55.000
0.00
0.00
35.25
5.14
7877
13673
4.039366
GGACACTCACTAACAGTTCTTCCT
59.961
45.833
0.00
0.00
0.00
3.36
7882
13678
6.086785
ACTAAGGACACTCACTAACAGTTC
57.913
41.667
0.00
0.00
0.00
3.01
7896
13692
4.081642
GCAACCATCTCAGTACTAAGGACA
60.082
45.833
0.00
0.00
0.00
4.02
7897
13693
4.434520
GCAACCATCTCAGTACTAAGGAC
58.565
47.826
0.00
0.00
0.00
3.85
7898
13694
3.130516
CGCAACCATCTCAGTACTAAGGA
59.869
47.826
0.00
0.00
0.00
3.36
7899
13695
3.448686
CGCAACCATCTCAGTACTAAGG
58.551
50.000
0.00
0.00
0.00
2.69
7900
13696
2.860735
GCGCAACCATCTCAGTACTAAG
59.139
50.000
0.30
0.00
0.00
2.18
7901
13697
2.418197
GGCGCAACCATCTCAGTACTAA
60.418
50.000
10.83
0.00
38.86
2.24
7902
13698
1.136305
GGCGCAACCATCTCAGTACTA
59.864
52.381
10.83
0.00
38.86
1.82
7903
13699
0.108138
GGCGCAACCATCTCAGTACT
60.108
55.000
10.83
0.00
38.86
2.73
7904
13700
1.090052
GGGCGCAACCATCTCAGTAC
61.090
60.000
10.83
0.00
42.05
2.73
7919
13715
2.223272
GCGAGAAGGAATTAAAAGGGCG
60.223
50.000
0.00
0.00
0.00
6.13
7926
13722
6.882140
TGGATAAGTTTGCGAGAAGGAATTAA
59.118
34.615
0.00
0.00
0.00
1.40
7944
13740
3.985279
TCGTTCAAACACGAGTGGATAAG
59.015
43.478
8.19
0.00
44.18
1.73
7965
13767
6.484308
GGATCCTACTCTACACAGTTCTACTC
59.516
46.154
3.84
0.00
0.00
2.59
7966
13768
6.159046
AGGATCCTACTCTACACAGTTCTACT
59.841
42.308
14.27
0.00
0.00
2.57
7967
13769
6.261381
CAGGATCCTACTCTACACAGTTCTAC
59.739
46.154
15.67
0.00
0.00
2.59
7990
13793
3.338249
ACGATCAAGTGGGATCAAACAG
58.662
45.455
0.00
0.00
43.07
3.16
8013
13816
2.029307
GCGGTGGGAGGTAGACATCC
62.029
65.000
4.76
4.76
45.46
3.51
8022
13825
2.676121
TGCATTTGCGGTGGGAGG
60.676
61.111
0.00
0.00
45.83
4.30
8159
13962
2.183300
GCCATGTCGTAGGCGTCA
59.817
61.111
0.00
0.00
41.70
4.35
8271
14074
0.243907
CGCGGGAGAGAAAAGACAGA
59.756
55.000
0.00
0.00
0.00
3.41
8326
14129
4.083855
CGAGTCACTTTGCTTGCTAATGAA
60.084
41.667
0.00
0.00
0.00
2.57
8333
14136
0.110464
GAGCGAGTCACTTTGCTTGC
60.110
55.000
6.92
0.00
41.24
4.01
8339
14142
0.384309
TGACACGAGCGAGTCACTTT
59.616
50.000
16.87
0.00
39.92
2.66
8347
14150
1.203758
ACATACCATTGACACGAGCGA
59.796
47.619
0.00
0.00
0.00
4.93
8379
14182
4.051167
TCGCCCTCCAGGTACCGA
62.051
66.667
6.18
0.00
38.26
4.69
8744
14547
4.814294
CCCGGCTGGTACGTCTGC
62.814
72.222
11.58
0.00
0.00
4.26
8785
14595
0.174845
TTGATCACCCGCTCGTAAGG
59.825
55.000
0.00
0.00
38.47
2.69
8786
14596
1.560923
CTTGATCACCCGCTCGTAAG
58.439
55.000
0.00
0.00
0.00
2.34
8847
14657
4.655440
AACAAAGAAACGCAAACCAAAC
57.345
36.364
0.00
0.00
0.00
2.93
8951
14761
9.690913
TCCATCATCTCTTTCTGTTTTATTCAT
57.309
29.630
0.00
0.00
0.00
2.57
9043
15044
2.519013
AGGATTTCCTCAACACCTTGC
58.481
47.619
0.00
0.00
44.77
4.01
9113
15116
4.433304
CAGTTTACTCTTGTGCGTTTTTCG
59.567
41.667
0.00
0.00
43.12
3.46
9131
15135
0.882927
TCTAGCGGCGTTTGCAGTTT
60.883
50.000
9.37
0.00
45.35
2.66
9158
15163
1.078709
TTTTCATGCGCTTCTCCTCG
58.921
50.000
9.73
0.00
0.00
4.63
9175
15180
2.436646
CACTCCTGGCGGCGATTT
60.437
61.111
12.98
0.00
0.00
2.17
9193
15198
1.621317
TCGATGAGTGCAGGTGGTTAA
59.379
47.619
0.00
0.00
0.00
2.01
9221
15226
2.626467
CCTTGAAGGGGGAAGGGGG
61.626
68.421
2.50
0.00
35.93
5.40
9608
15614
6.318144
CACATGGCTAATGAGTGAAAATCTCT
59.682
38.462
0.00
0.00
38.72
3.10
9678
15684
7.615365
TCAACTCTATTAACAAAGCCCATGATT
59.385
33.333
0.00
0.00
0.00
2.57
9707
15713
3.973206
ACGAAGGGAACACATCACATA
57.027
42.857
0.00
0.00
32.04
2.29
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.