Multiple sequence alignment - TraesCS3B01G324800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G324800 chr3B 100.000 3803 0 0 1 3803 525640419 525644221 0.000000e+00 7023
1 TraesCS3B01G324800 chr3B 74.854 859 174 30 2964 3797 665475518 665474677 6.040000e-93 351
2 TraesCS3B01G324800 chr2A 92.830 2371 129 6 1474 3803 741866164 741868534 0.000000e+00 3398
3 TraesCS3B01G324800 chr2A 95.000 600 29 1 882 1480 741832270 741832869 0.000000e+00 941
4 TraesCS3B01G324800 chr6B 96.410 1532 36 4 885 2398 603755787 603754257 0.000000e+00 2507
5 TraesCS3B01G324800 chr6B 96.930 1433 19 5 2393 3803 603745219 603743790 0.000000e+00 2379
6 TraesCS3B01G324800 chr1D 95.065 1317 47 6 2503 3803 6506002 6507316 0.000000e+00 2056
7 TraesCS3B01G324800 chr1D 90.171 997 66 6 2812 3803 385556188 385555219 0.000000e+00 1269
8 TraesCS3B01G324800 chr5A 88.244 1378 142 9 1949 3309 425582674 425584048 0.000000e+00 1629
9 TraesCS3B01G324800 chr3D 97.150 807 22 1 2997 3803 528799770 528798965 0.000000e+00 1362
10 TraesCS3B01G324800 chr3D 95.037 806 30 4 5 800 399859061 399859866 0.000000e+00 1258
11 TraesCS3B01G324800 chr3A 92.828 488 30 3 324 806 519086605 519087092 0.000000e+00 702
12 TraesCS3B01G324800 chr3A 92.121 330 12 6 1 319 519085956 519086282 1.610000e-123 453
13 TraesCS3B01G324800 chr1A 89.238 446 39 7 2809 3251 485241091 485240652 2.000000e-152 549
14 TraesCS3B01G324800 chr4A 82.661 248 35 7 3554 3797 743169910 743169667 2.980000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G324800 chr3B 525640419 525644221 3802 False 7023.0 7023 100.0000 1 3803 1 chr3B.!!$F1 3802
1 TraesCS3B01G324800 chr3B 665474677 665475518 841 True 351.0 351 74.8540 2964 3797 1 chr3B.!!$R1 833
2 TraesCS3B01G324800 chr2A 741866164 741868534 2370 False 3398.0 3398 92.8300 1474 3803 1 chr2A.!!$F2 2329
3 TraesCS3B01G324800 chr2A 741832270 741832869 599 False 941.0 941 95.0000 882 1480 1 chr2A.!!$F1 598
4 TraesCS3B01G324800 chr6B 603754257 603755787 1530 True 2507.0 2507 96.4100 885 2398 1 chr6B.!!$R2 1513
5 TraesCS3B01G324800 chr6B 603743790 603745219 1429 True 2379.0 2379 96.9300 2393 3803 1 chr6B.!!$R1 1410
6 TraesCS3B01G324800 chr1D 6506002 6507316 1314 False 2056.0 2056 95.0650 2503 3803 1 chr1D.!!$F1 1300
7 TraesCS3B01G324800 chr1D 385555219 385556188 969 True 1269.0 1269 90.1710 2812 3803 1 chr1D.!!$R1 991
8 TraesCS3B01G324800 chr5A 425582674 425584048 1374 False 1629.0 1629 88.2440 1949 3309 1 chr5A.!!$F1 1360
9 TraesCS3B01G324800 chr3D 528798965 528799770 805 True 1362.0 1362 97.1500 2997 3803 1 chr3D.!!$R1 806
10 TraesCS3B01G324800 chr3D 399859061 399859866 805 False 1258.0 1258 95.0370 5 800 1 chr3D.!!$F1 795
11 TraesCS3B01G324800 chr3A 519085956 519087092 1136 False 577.5 702 92.4745 1 806 2 chr3A.!!$F1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 1196 0.041238 TGAACACCTCTCTCCGGGAT 59.959 55.0 0.0 0.0 0.0 3.85 F
2022 2382 0.803117 GTACTCGGGCAGGAAAAAGC 59.197 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2385 0.030638 CTTGTTCAGTGGGTTTGGCG 59.969 55.0 0.0 0.0 0.0 5.69 R
3279 3669 2.490903 CCCCATCTCTGCTTTTGTTCAG 59.509 50.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
284 296 7.863722 TGCCCCTCTTTAGTTAACATAATACA 58.136 34.615 8.61 0.00 0.00 2.29
333 669 3.791586 GAGTCAGGCTCAGGGGGC 61.792 72.222 0.00 0.00 43.58 5.80
339 675 4.475135 GGCTCAGGGGGCGACTTC 62.475 72.222 0.00 0.00 0.00 3.01
380 719 3.634397 ATCCCTCGCTGATTTCTTTCA 57.366 42.857 0.00 0.00 0.00 2.69
460 799 4.263860 GGATATACTCCTCCTACCGGAACT 60.264 50.000 9.46 0.00 41.29 3.01
471 810 0.981943 ACCGGAACTCCCCACTTAAG 59.018 55.000 9.46 0.00 0.00 1.85
473 812 1.626825 CCGGAACTCCCCACTTAAGAA 59.373 52.381 10.09 0.00 0.00 2.52
475 814 3.308188 CCGGAACTCCCCACTTAAGAAAT 60.308 47.826 10.09 0.00 0.00 2.17
477 816 4.017126 GGAACTCCCCACTTAAGAAATGG 58.983 47.826 10.09 6.55 0.00 3.16
488 827 4.819630 ACTTAAGAAATGGTCTCAACGCAA 59.180 37.500 10.09 0.00 34.56 4.85
583 922 1.362355 CAAGAAACGGGCCGCTTTT 59.638 52.632 28.71 20.29 0.00 2.27
599 938 2.494059 CTTTTCTTCTCAACGCTCCCA 58.506 47.619 0.00 0.00 0.00 4.37
676 1015 1.456892 ATGGGGTGCTCGTCGGATA 60.457 57.895 0.00 0.00 0.00 2.59
700 1039 2.896685 TGGATGTGGCCGAAAGATTTTT 59.103 40.909 0.00 0.00 0.00 1.94
704 1043 2.295909 TGTGGCCGAAAGATTTTTCAGG 59.704 45.455 9.19 10.95 42.27 3.86
822 1163 2.457366 TTTTTGCGACTCCTCTCTCC 57.543 50.000 0.00 0.00 0.00 3.71
823 1164 0.243907 TTTTGCGACTCCTCTCTCCG 59.756 55.000 0.00 0.00 0.00 4.63
824 1165 0.608308 TTTGCGACTCCTCTCTCCGA 60.608 55.000 0.00 0.00 0.00 4.55
825 1166 1.027255 TTGCGACTCCTCTCTCCGAG 61.027 60.000 0.00 0.00 39.57 4.63
850 1191 5.576447 TTTTTGTTTGAACACCTCTCTCC 57.424 39.130 0.00 0.00 38.92 3.71
851 1192 2.526304 TGTTTGAACACCTCTCTCCG 57.474 50.000 0.00 0.00 33.17 4.63
852 1193 1.070134 TGTTTGAACACCTCTCTCCGG 59.930 52.381 0.00 0.00 33.17 5.14
853 1194 0.685097 TTTGAACACCTCTCTCCGGG 59.315 55.000 0.00 0.00 0.00 5.73
854 1195 0.178944 TTGAACACCTCTCTCCGGGA 60.179 55.000 0.00 0.00 0.00 5.14
855 1196 0.041238 TGAACACCTCTCTCCGGGAT 59.959 55.000 0.00 0.00 0.00 3.85
856 1197 1.196012 GAACACCTCTCTCCGGGATT 58.804 55.000 0.00 0.00 0.00 3.01
857 1198 1.555533 GAACACCTCTCTCCGGGATTT 59.444 52.381 0.00 0.00 0.00 2.17
858 1199 2.544844 ACACCTCTCTCCGGGATTTA 57.455 50.000 0.00 0.00 0.00 1.40
859 1200 3.047695 ACACCTCTCTCCGGGATTTAT 57.952 47.619 0.00 0.00 0.00 1.40
860 1201 3.385115 ACACCTCTCTCCGGGATTTATT 58.615 45.455 0.00 0.00 0.00 1.40
861 1202 3.388350 ACACCTCTCTCCGGGATTTATTC 59.612 47.826 0.00 0.00 0.00 1.75
862 1203 3.388024 CACCTCTCTCCGGGATTTATTCA 59.612 47.826 0.00 0.00 0.00 2.57
863 1204 4.040952 CACCTCTCTCCGGGATTTATTCAT 59.959 45.833 0.00 0.00 0.00 2.57
864 1205 4.660771 ACCTCTCTCCGGGATTTATTCATT 59.339 41.667 0.00 0.00 0.00 2.57
865 1206 5.221742 ACCTCTCTCCGGGATTTATTCATTC 60.222 44.000 0.00 0.00 0.00 2.67
866 1207 5.221722 CCTCTCTCCGGGATTTATTCATTCA 60.222 44.000 0.00 0.00 0.00 2.57
867 1208 6.439636 TCTCTCCGGGATTTATTCATTCAT 57.560 37.500 0.00 0.00 0.00 2.57
868 1209 7.310671 CCTCTCTCCGGGATTTATTCATTCATA 60.311 40.741 0.00 0.00 0.00 2.15
869 1210 8.150827 TCTCTCCGGGATTTATTCATTCATAT 57.849 34.615 0.00 0.00 0.00 1.78
870 1211 9.267071 TCTCTCCGGGATTTATTCATTCATATA 57.733 33.333 0.00 0.00 0.00 0.86
872 1213 9.836864 TCTCCGGGATTTATTCATTCATATATG 57.163 33.333 6.36 6.36 0.00 1.78
873 1214 8.450578 TCCGGGATTTATTCATTCATATATGC 57.549 34.615 7.92 0.00 0.00 3.14
874 1215 7.226523 TCCGGGATTTATTCATTCATATATGCG 59.773 37.037 7.92 0.94 0.00 4.73
875 1216 7.012327 CCGGGATTTATTCATTCATATATGCGT 59.988 37.037 7.92 0.00 0.00 5.24
876 1217 7.852454 CGGGATTTATTCATTCATATATGCGTG 59.148 37.037 7.92 8.92 0.00 5.34
877 1218 7.645340 GGGATTTATTCATTCATATATGCGTGC 59.355 37.037 7.92 0.00 0.00 5.34
878 1219 8.183536 GGATTTATTCATTCATATATGCGTGCA 58.816 33.333 7.92 0.00 0.00 4.57
879 1220 9.558648 GATTTATTCATTCATATATGCGTGCAA 57.441 29.630 7.92 0.00 0.00 4.08
880 1221 8.726650 TTTATTCATTCATATATGCGTGCAAC 57.273 30.769 7.92 0.00 0.00 4.17
1000 1341 3.546009 CGCGGAGGGGATTTCCTA 58.454 61.111 0.00 0.00 37.25 2.94
1416 1758 2.351276 GCCTCGAGGGAAGCCAAA 59.649 61.111 32.06 0.00 37.23 3.28
1456 1798 5.517322 GATACAGTCGATACTTCAAGGGT 57.483 43.478 0.00 0.00 31.97 4.34
1592 1934 3.781307 CCGGGATGGCTTCGGTGA 61.781 66.667 0.00 0.00 39.04 4.02
1849 2209 1.877576 CTCGCAGCAGTGGAGTGGTA 61.878 60.000 0.00 0.00 0.00 3.25
1855 2215 2.826128 CAGCAGTGGAGTGGTACTAGAA 59.174 50.000 0.00 0.00 0.00 2.10
1893 2253 5.796502 TTAGGAAGAAAGGGAATGGACAT 57.203 39.130 0.00 0.00 0.00 3.06
1947 2307 2.090550 TGAGGGAGATAGGAATGCTGGA 60.091 50.000 0.00 0.00 0.00 3.86
1960 2320 2.260869 GCTGGAAAGTTGGCGCAGA 61.261 57.895 10.83 0.00 0.00 4.26
2022 2382 0.803117 GTACTCGGGCAGGAAAAAGC 59.197 55.000 0.00 0.00 0.00 3.51
2025 2385 1.912371 CTCGGGCAGGAAAAAGCGAC 61.912 60.000 0.00 0.00 0.00 5.19
2146 2506 6.645306 TGCATCAATTGTGGATTCAATCATT 58.355 32.000 5.13 0.00 37.09 2.57
2193 2553 3.487120 AGACCACACCCTGTTCTAAAC 57.513 47.619 0.00 0.00 0.00 2.01
2306 2667 2.290514 TGGTGCAGATTCTGAAAGGGAG 60.291 50.000 17.87 0.00 32.44 4.30
2388 2749 4.019681 TGGAAAATCAAGGAGTACGGTGAT 60.020 41.667 0.00 0.00 32.29 3.06
3092 3480 9.465199 TTCAGGAATGATGATTATGTTCAAGAA 57.535 29.630 0.00 0.00 0.00 2.52
3269 3657 1.636003 AGGCAAGTCCTAGGGGAAAAG 59.364 52.381 9.46 0.00 45.41 2.27
3279 3669 4.080299 TCCTAGGGGAAAAGCTCAAAGATC 60.080 45.833 9.46 0.00 38.93 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 209 2.162608 CCCGGTCGCATTTGTTTAATCA 59.837 45.455 0.00 0.00 0.00 2.57
288 300 8.404107 TGGTTAAGGAAAAAGAGATTTACCAG 57.596 34.615 0.00 0.00 30.74 4.00
293 305 9.147732 ACTCATTGGTTAAGGAAAAAGAGATTT 57.852 29.630 0.00 0.00 0.00 2.17
333 669 2.993899 AGATTACCACTTTGCGAAGTCG 59.006 45.455 16.79 13.02 44.14 4.18
339 675 6.430451 GGATTTGATAGATTACCACTTTGCG 58.570 40.000 0.00 0.00 0.00 4.85
380 719 6.894103 AGAGGTAGATTCATGGCAAAGAAAAT 59.106 34.615 9.36 4.81 0.00 1.82
460 799 3.913799 TGAGACCATTTCTTAAGTGGGGA 59.086 43.478 13.53 0.00 37.33 4.81
471 810 2.918131 GCAGTTGCGTTGAGACCATTTC 60.918 50.000 0.00 0.00 0.00 2.17
473 812 0.593128 GCAGTTGCGTTGAGACCATT 59.407 50.000 0.00 0.00 0.00 3.16
475 814 1.891919 GGCAGTTGCGTTGAGACCA 60.892 57.895 0.00 0.00 43.26 4.02
477 816 1.726853 ATAGGCAGTTGCGTTGAGAC 58.273 50.000 4.53 0.00 43.26 3.36
507 846 3.494232 GCAAAAGATACGGCGCTTTTAA 58.506 40.909 18.63 0.00 41.07 1.52
583 922 0.976641 ACATGGGAGCGTTGAGAAGA 59.023 50.000 0.00 0.00 0.00 2.87
676 1015 1.671054 CTTTCGGCCACATCCACGT 60.671 57.895 2.24 0.00 0.00 4.49
685 1024 1.892474 CCCTGAAAAATCTTTCGGCCA 59.108 47.619 2.24 0.00 43.81 5.36
700 1039 1.274703 GCTTCCATCCTCCACCCTGA 61.275 60.000 0.00 0.00 0.00 3.86
704 1043 0.394899 CCTTGCTTCCATCCTCCACC 60.395 60.000 0.00 0.00 0.00 4.61
806 1147 1.002502 TCGGAGAGAGGAGTCGCAA 60.003 57.895 0.00 0.00 0.00 4.85
807 1148 2.669240 TCGGAGAGAGGAGTCGCA 59.331 61.111 0.00 0.00 0.00 5.10
828 1169 4.095782 CGGAGAGAGGTGTTCAAACAAAAA 59.904 41.667 0.00 0.00 41.21 1.94
829 1170 3.625764 CGGAGAGAGGTGTTCAAACAAAA 59.374 43.478 0.00 0.00 41.21 2.44
830 1171 3.202906 CGGAGAGAGGTGTTCAAACAAA 58.797 45.455 0.00 0.00 41.21 2.83
831 1172 2.484770 CCGGAGAGAGGTGTTCAAACAA 60.485 50.000 0.00 0.00 41.21 2.83
832 1173 1.070134 CCGGAGAGAGGTGTTCAAACA 59.930 52.381 0.00 0.00 36.38 2.83
833 1174 1.608283 CCCGGAGAGAGGTGTTCAAAC 60.608 57.143 0.73 0.00 0.00 2.93
834 1175 0.685097 CCCGGAGAGAGGTGTTCAAA 59.315 55.000 0.73 0.00 0.00 2.69
835 1176 0.178944 TCCCGGAGAGAGGTGTTCAA 60.179 55.000 0.73 0.00 0.00 2.69
836 1177 0.041238 ATCCCGGAGAGAGGTGTTCA 59.959 55.000 0.73 0.00 0.00 3.18
837 1178 1.196012 AATCCCGGAGAGAGGTGTTC 58.804 55.000 0.73 0.00 0.00 3.18
838 1179 1.657804 AAATCCCGGAGAGAGGTGTT 58.342 50.000 0.73 0.00 0.00 3.32
839 1180 2.544844 TAAATCCCGGAGAGAGGTGT 57.455 50.000 0.73 0.00 0.00 4.16
840 1181 3.388024 TGAATAAATCCCGGAGAGAGGTG 59.612 47.826 0.73 0.00 0.00 4.00
841 1182 3.654273 TGAATAAATCCCGGAGAGAGGT 58.346 45.455 0.73 0.00 0.00 3.85
842 1183 4.899352 ATGAATAAATCCCGGAGAGAGG 57.101 45.455 0.73 0.00 0.00 3.69
843 1184 5.858381 TGAATGAATAAATCCCGGAGAGAG 58.142 41.667 0.73 0.00 0.00 3.20
844 1185 5.887214 TGAATGAATAAATCCCGGAGAGA 57.113 39.130 0.73 0.00 0.00 3.10
846 1187 9.836864 CATATATGAATGAATAAATCCCGGAGA 57.163 33.333 0.73 0.00 0.00 3.71
847 1188 8.562892 GCATATATGAATGAATAAATCCCGGAG 58.437 37.037 17.10 0.00 0.00 4.63
848 1189 7.226523 CGCATATATGAATGAATAAATCCCGGA 59.773 37.037 17.10 0.00 0.00 5.14
849 1190 7.012327 ACGCATATATGAATGAATAAATCCCGG 59.988 37.037 17.10 0.00 0.00 5.73
850 1191 7.852454 CACGCATATATGAATGAATAAATCCCG 59.148 37.037 17.10 7.36 0.00 5.14
851 1192 7.645340 GCACGCATATATGAATGAATAAATCCC 59.355 37.037 17.10 0.00 0.00 3.85
852 1193 8.183536 TGCACGCATATATGAATGAATAAATCC 58.816 33.333 17.10 0.00 0.00 3.01
853 1194 9.558648 TTGCACGCATATATGAATGAATAAATC 57.441 29.630 17.10 0.48 0.00 2.17
854 1195 9.345517 GTTGCACGCATATATGAATGAATAAAT 57.654 29.630 17.10 0.00 0.00 1.40
855 1196 7.807433 GGTTGCACGCATATATGAATGAATAAA 59.193 33.333 17.10 4.38 0.00 1.40
856 1197 7.304735 GGTTGCACGCATATATGAATGAATAA 58.695 34.615 17.10 6.99 0.00 1.40
857 1198 6.402011 CGGTTGCACGCATATATGAATGAATA 60.402 38.462 17.10 1.89 0.00 1.75
858 1199 5.617529 CGGTTGCACGCATATATGAATGAAT 60.618 40.000 17.10 0.00 0.00 2.57
859 1200 4.319405 CGGTTGCACGCATATATGAATGAA 60.319 41.667 17.10 5.16 0.00 2.57
860 1201 3.186205 CGGTTGCACGCATATATGAATGA 59.814 43.478 17.10 1.93 0.00 2.57
861 1202 3.186205 TCGGTTGCACGCATATATGAATG 59.814 43.478 17.10 13.38 0.00 2.67
862 1203 3.398406 TCGGTTGCACGCATATATGAAT 58.602 40.909 17.10 0.06 0.00 2.57
863 1204 2.799978 CTCGGTTGCACGCATATATGAA 59.200 45.455 17.10 0.00 0.00 2.57
864 1205 2.403259 CTCGGTTGCACGCATATATGA 58.597 47.619 17.10 0.00 0.00 2.15
865 1206 1.136252 GCTCGGTTGCACGCATATATG 60.136 52.381 8.45 8.45 0.00 1.78
866 1207 1.148310 GCTCGGTTGCACGCATATAT 58.852 50.000 0.00 0.00 0.00 0.86
867 1208 1.212455 CGCTCGGTTGCACGCATATA 61.212 55.000 0.00 0.00 0.00 0.86
868 1209 2.525248 CGCTCGGTTGCACGCATAT 61.525 57.895 0.00 0.00 0.00 1.78
869 1210 3.185365 CGCTCGGTTGCACGCATA 61.185 61.111 0.00 0.00 0.00 3.14
1000 1341 2.037208 CCAAAACCTCCCCGCCAT 59.963 61.111 0.00 0.00 0.00 4.40
1148 1489 2.592861 GATGGCGCCATCTCACCC 60.593 66.667 46.89 29.48 46.67 4.61
1456 1798 0.618458 CTAACCCTAGGCAGCCACAA 59.382 55.000 15.80 0.00 0.00 3.33
1589 1931 1.026718 CCAGTTGGATCGCCCTTCAC 61.027 60.000 0.00 0.00 37.39 3.18
1592 1934 1.604378 CTCCAGTTGGATCGCCCTT 59.396 57.895 0.48 0.00 44.46 3.95
1849 2209 7.391833 CCTAAATTTTTCCTGCTCTGTTCTAGT 59.608 37.037 0.00 0.00 0.00 2.57
1855 2215 6.306987 TCTTCCTAAATTTTTCCTGCTCTGT 58.693 36.000 0.00 0.00 0.00 3.41
1893 2253 1.474330 TCTGCGGCATCACTTCTCTA 58.526 50.000 1.75 0.00 0.00 2.43
1947 2307 1.269257 GCTTCTTTCTGCGCCAACTTT 60.269 47.619 4.18 0.00 0.00 2.66
1960 2320 6.000219 TGCTAGTTTTCTGATCTGCTTCTTT 59.000 36.000 0.00 0.00 0.00 2.52
2022 2382 1.890041 TTCAGTGGGTTTGGCGTCG 60.890 57.895 0.00 0.00 0.00 5.12
2025 2385 0.030638 CTTGTTCAGTGGGTTTGGCG 59.969 55.000 0.00 0.00 0.00 5.69
2146 2506 5.997129 TCAGCATTACACATCTTTCAGACAA 59.003 36.000 0.00 0.00 0.00 3.18
2193 2553 2.693762 CGCTCCACAACCAGCCATG 61.694 63.158 0.00 0.00 31.37 3.66
2252 2613 8.909671 CATTCTGAGCACTTTTATCAAACTTTC 58.090 33.333 0.00 0.00 0.00 2.62
2616 2977 1.884579 GCTTGCATATCCACATCCTGG 59.115 52.381 0.00 0.00 42.29 4.45
2993 3381 5.507985 GCCTTTTGACTGTGCTACAATTTCT 60.508 40.000 0.00 0.00 0.00 2.52
3092 3480 6.493115 CCATGTCTTCTCCATAGTCTATCTGT 59.507 42.308 0.00 0.00 0.00 3.41
3269 3657 4.863491 TGCTTTTGTTCAGATCTTTGAGC 58.137 39.130 0.00 0.00 0.00 4.26
3279 3669 2.490903 CCCCATCTCTGCTTTTGTTCAG 59.509 50.000 0.00 0.00 0.00 3.02
3463 3859 5.337956 TCCATGGGCAGTATCCAAAATAT 57.662 39.130 13.02 0.00 37.87 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.