Multiple sequence alignment - TraesCS3B01G323900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G323900 chr3B 100.000 6124 0 0 1 6124 524454988 524448865 0.000000e+00 11310
1 TraesCS3B01G323900 chr3D 96.549 5883 149 26 243 6115 398407547 398401709 0.000000e+00 9690
2 TraesCS3B01G323900 chr3D 93.522 247 12 3 1 245 398408066 398407822 1.250000e-96 364
3 TraesCS3B01G323900 chr3A 95.520 5603 191 30 275 5856 517667204 517661641 0.000000e+00 8901
4 TraesCS3B01G323900 chr3A 93.885 278 10 3 5848 6124 517661487 517661216 4.420000e-111 412
5 TraesCS3B01G323900 chr1B 81.757 1480 268 2 1616 3094 581201188 581202666 0.000000e+00 1236
6 TraesCS3B01G323900 chr1B 84.201 557 80 5 994 1549 581200599 581201148 9.040000e-148 534
7 TraesCS3B01G323900 chr1A 81.622 1480 270 2 1616 3094 527951285 527952763 0.000000e+00 1225
8 TraesCS3B01G323900 chr1D 81.554 1480 271 2 1616 3094 430411219 430412697 0.000000e+00 1219
9 TraesCS3B01G323900 chr1D 84.201 557 80 5 994 1549 430410630 430411179 9.040000e-148 534


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G323900 chr3B 524448865 524454988 6123 True 11310.0 11310 100.0000 1 6124 1 chr3B.!!$R1 6123
1 TraesCS3B01G323900 chr3D 398401709 398408066 6357 True 5027.0 9690 95.0355 1 6115 2 chr3D.!!$R1 6114
2 TraesCS3B01G323900 chr3A 517661216 517667204 5988 True 4656.5 8901 94.7025 275 6124 2 chr3A.!!$R1 5849
3 TraesCS3B01G323900 chr1B 581200599 581202666 2067 False 885.0 1236 82.9790 994 3094 2 chr1B.!!$F1 2100
4 TraesCS3B01G323900 chr1A 527951285 527952763 1478 False 1225.0 1225 81.6220 1616 3094 1 chr1A.!!$F1 1478
5 TraesCS3B01G323900 chr1D 430410630 430412697 2067 False 876.5 1219 82.8775 994 3094 2 chr1D.!!$F1 2100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 231 0.036010 ACAGATTTGTGAGCCGGGAG 60.036 55.000 2.18 0.00 35.83 4.30 F
982 1284 0.178947 CCGAGGGGGCTAGATTCTCT 60.179 60.000 0.00 0.00 0.00 3.10 F
1578 1880 0.671781 CCACAGCAACTTCCTCCTCG 60.672 60.000 0.00 0.00 0.00 4.63 F
2535 2837 0.322975 AGAAGAGCATGCTCGTGGTT 59.677 50.000 35.72 26.19 46.90 3.67 F
3708 4012 0.035439 GCTTGGCTGGCTACTACCAA 60.035 55.000 2.00 0.00 39.86 3.67 F
3810 4114 2.034221 GCCCAGGCTTCGGACTTT 59.966 61.111 0.08 0.00 38.26 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1871 1.378250 GGAGGACGACGAGGAGGAA 60.378 63.158 0.00 0.00 0.00 3.36 R
2535 2837 2.106338 TGAGCACCCAATGAACTCTGAA 59.894 45.455 0.00 0.00 0.00 3.02 R
3575 3877 3.071602 AGCTCTTCAGGTGACTTAGCAAA 59.928 43.478 9.06 0.00 40.21 3.68 R
3810 4114 1.570024 TCAGCCATTTCCATCCATCCA 59.430 47.619 0.00 0.00 0.00 3.41 R
4655 4968 0.786435 AGGCAATTTTGAGAGGGGGT 59.214 50.000 0.00 0.00 0.00 4.95 R
5795 6109 0.740737 AGCAAAGTGTCCACAGTTGC 59.259 50.000 21.63 21.63 46.23 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.130160 GCTGCTTTCAGGAGGCCG 61.130 66.667 0.00 0.00 40.65 6.13
42 45 2.351350 CCCACCGCATCACAAAAACTAC 60.351 50.000 0.00 0.00 0.00 2.73
63 66 4.389374 ACATAACCTGTTGTCTGTTGAGG 58.611 43.478 0.00 0.00 32.90 3.86
73 76 2.224137 TGTCTGTTGAGGCTTGAGACAG 60.224 50.000 12.20 11.96 38.45 3.51
116 119 1.164662 CCAATCTGATGAGCCTGCCG 61.165 60.000 0.00 0.00 0.00 5.69
134 137 3.261951 CGGCATCGTAGTTGCGGG 61.262 66.667 0.00 0.00 41.07 6.13
178 181 3.247886 CGCTCAACATGATGGATTCTGAG 59.752 47.826 0.00 2.45 33.54 3.35
184 187 3.117625 ACATGATGGATTCTGAGCCACAT 60.118 43.478 0.00 7.01 45.63 3.21
186 189 2.240414 TGATGGATTCTGAGCCACATGT 59.760 45.455 0.00 0.00 45.63 3.21
187 190 2.885135 TGGATTCTGAGCCACATGTT 57.115 45.000 0.00 0.00 36.14 2.71
194 197 3.826524 TCTGAGCCACATGTTTTTACCA 58.173 40.909 0.00 0.00 0.00 3.25
228 231 0.036010 ACAGATTTGTGAGCCGGGAG 60.036 55.000 2.18 0.00 35.83 4.30
273 553 7.301054 CAGCAGAAGGAACAAAACAATACTAG 58.699 38.462 0.00 0.00 0.00 2.57
296 576 0.530744 AAACGAGCATACAGGAGCGA 59.469 50.000 0.00 0.00 35.48 4.93
389 669 1.154908 CGGACACGTTTTTCTCGCG 60.155 57.895 0.00 0.00 34.81 5.87
435 715 2.619646 GAGCCACCGGAACAGTTAAAAA 59.380 45.455 9.46 0.00 0.00 1.94
436 716 3.227614 AGCCACCGGAACAGTTAAAAAT 58.772 40.909 9.46 0.00 0.00 1.82
438 718 3.859252 GCCACCGGAACAGTTAAAAATGG 60.859 47.826 9.46 0.51 0.00 3.16
440 720 2.297880 ACCGGAACAGTTAAAAATGGCC 59.702 45.455 9.46 0.00 0.00 5.36
441 721 2.297597 CCGGAACAGTTAAAAATGGCCA 59.702 45.455 8.56 8.56 0.00 5.36
442 722 3.243907 CCGGAACAGTTAAAAATGGCCAA 60.244 43.478 10.96 0.00 0.00 4.52
443 723 4.562552 CCGGAACAGTTAAAAATGGCCAAT 60.563 41.667 10.96 0.00 0.00 3.16
444 724 5.336849 CCGGAACAGTTAAAAATGGCCAATA 60.337 40.000 10.96 0.00 0.00 1.90
445 725 6.159988 CGGAACAGTTAAAAATGGCCAATAA 58.840 36.000 10.96 4.46 0.00 1.40
446 726 6.816140 CGGAACAGTTAAAAATGGCCAATAAT 59.184 34.615 10.96 0.00 0.00 1.28
447 727 7.333174 CGGAACAGTTAAAAATGGCCAATAATT 59.667 33.333 10.96 5.54 0.00 1.40
448 728 9.660180 GGAACAGTTAAAAATGGCCAATAATTA 57.340 29.630 10.96 4.45 0.00 1.40
535 827 2.542595 GCCCTCATCGTAACCGTTAATG 59.457 50.000 0.00 0.00 35.01 1.90
565 862 2.124996 CCACAAGGGGAGGGGAGA 59.875 66.667 0.00 0.00 0.00 3.71
982 1284 0.178947 CCGAGGGGGCTAGATTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
1179 1481 3.519930 GAGGACGAGTCGGAGCCC 61.520 72.222 18.30 11.84 0.00 5.19
1569 1871 3.865929 CTCCGCGTCCACAGCAACT 62.866 63.158 4.92 0.00 34.19 3.16
1578 1880 0.671781 CCACAGCAACTTCCTCCTCG 60.672 60.000 0.00 0.00 0.00 4.63
1581 1883 0.734253 CAGCAACTTCCTCCTCGTCG 60.734 60.000 0.00 0.00 0.00 5.12
2535 2837 0.322975 AGAAGAGCATGCTCGTGGTT 59.677 50.000 35.72 26.19 46.90 3.67
2691 2993 2.268298 CACTACCGTTATGTCAGCACC 58.732 52.381 0.00 0.00 0.00 5.01
2941 3243 4.974645 TCCATCAACAAGACACCTAGTT 57.025 40.909 0.00 0.00 0.00 2.24
3104 3406 6.766429 ACTTCTTAAGGTACCGTCTTTCATT 58.234 36.000 2.68 0.00 0.00 2.57
3210 3512 9.817365 GCAATACATATTGTGCTAATCTGTTAG 57.183 33.333 12.12 0.00 43.72 2.34
3480 3782 5.885912 TCTTTAAACCAGTTCAAGCAGAGTT 59.114 36.000 0.00 0.00 0.00 3.01
3575 3877 6.942576 AGCACAACTATGTCTTGGTATTTTCT 59.057 34.615 0.00 0.00 37.82 2.52
3639 3941 3.262420 AGTGATTTCTTGGAATCGGTCG 58.738 45.455 0.00 0.00 38.57 4.79
3705 4009 1.740025 CTTTGCTTGGCTGGCTACTAC 59.260 52.381 2.00 0.00 0.00 2.73
3708 4012 0.035439 GCTTGGCTGGCTACTACCAA 60.035 55.000 2.00 0.00 39.86 3.67
3729 4033 8.039603 ACCAAATTTTCTCAAAAAGGAACAAC 57.960 30.769 0.00 0.00 37.76 3.32
3810 4114 2.034221 GCCCAGGCTTCGGACTTT 59.966 61.111 0.08 0.00 38.26 2.66
3963 4267 2.957006 GGCCAAAGAGATGCTTGATCAT 59.043 45.455 0.00 0.00 36.80 2.45
4052 4356 2.486982 CTCAGGTTTGTGCATCTCCTTG 59.513 50.000 0.00 0.00 0.00 3.61
4273 4579 6.573664 TCCATATGCAATTATGTTAGGTGC 57.426 37.500 6.58 0.00 35.75 5.01
4345 4657 2.131854 TCCTCTTGGTTGGGAAAGACA 58.868 47.619 0.00 0.00 34.23 3.41
4375 4687 4.053295 TGCTGACGACCTGTTTAACTTAC 58.947 43.478 0.00 0.00 0.00 2.34
4625 4938 3.205338 TGGTCACACAAGTTGACATCAG 58.795 45.455 10.54 0.00 34.52 2.90
4655 4968 5.591067 CCTTCTGGTTTAGTTTGTTGGTGTA 59.409 40.000 0.00 0.00 0.00 2.90
4676 4989 1.272648 CCCCCTCTCAAAATTGCCTCA 60.273 52.381 0.00 0.00 0.00 3.86
4808 5121 4.999950 TCAATGAAAGAGAGAGGAAAGCAC 59.000 41.667 0.00 0.00 0.00 4.40
5030 5343 4.446371 CAACAGATCCTGAACCTATGACC 58.554 47.826 0.45 0.00 35.18 4.02
5055 5368 1.269102 CCACCGATGAGTTAGCTACGG 60.269 57.143 14.65 14.65 39.77 4.02
5086 5399 5.449041 CCTCAATTGATATTGGTGGTGAACG 60.449 44.000 8.96 0.00 41.23 3.95
5194 5507 7.013369 AGTCGCTTCTACACATATATTCTGACA 59.987 37.037 0.00 0.00 0.00 3.58
5240 5553 1.272807 GACTAACACCAGGGCCTACA 58.727 55.000 5.28 0.00 0.00 2.74
5398 5711 5.044558 CCTTCTCTAGTAAAACGAGATGCC 58.955 45.833 0.00 0.00 34.13 4.40
5428 5741 2.611971 GGCAAGTGAACTGTATGGACGA 60.612 50.000 0.00 0.00 0.00 4.20
5441 5754 0.324368 TGGACGAGGTGATAGGCACT 60.324 55.000 0.00 0.00 46.86 4.40
5504 5817 1.812922 GCATCCTCCTCTGCGTGTG 60.813 63.158 0.00 0.00 0.00 3.82
5509 5822 1.142748 CTCCTCTGCGTGTGATCCC 59.857 63.158 0.00 0.00 0.00 3.85
5536 5849 5.821516 AAACAAGTTACACATCGGTTTCA 57.178 34.783 0.00 0.00 0.00 2.69
5547 5860 5.929415 ACACATCGGTTTCAGTTTTGTTTTT 59.071 32.000 0.00 0.00 0.00 1.94
5595 5909 3.751175 TGAATGGTGAGATTTGGTTCGTC 59.249 43.478 0.00 0.00 0.00 4.20
5700 6014 5.556355 TGCTTCTATCTGAAAACAGCATG 57.444 39.130 0.00 0.00 36.70 4.06
5718 6032 7.798596 CAGCATGTAGGATTCTAAACTTGAT 57.201 36.000 0.00 0.00 0.00 2.57
5795 6109 3.670203 GATTTTCCTAACATGTGACGCG 58.330 45.455 3.53 3.53 0.00 6.01
5819 6133 2.023673 CTGTGGACACTTTGCTTGGAA 58.976 47.619 3.91 0.00 0.00 3.53
5877 6352 2.036604 TGCTTCATCAGTTCGTGGTGTA 59.963 45.455 0.00 0.00 38.57 2.90
5921 6396 5.910614 ACGGATAGGTACAAAGTATGAACC 58.089 41.667 0.00 0.00 0.00 3.62
5947 6424 9.861824 CGACAACGTAAAACAGATGATGTTCCC 62.862 44.444 0.00 0.00 41.88 3.97
5978 6455 2.135903 ATCGTGGACATGGGGCACAA 62.136 55.000 0.00 0.00 0.00 3.33
6001 6478 1.717032 TGTGTGGGTAGAACTGAGCT 58.283 50.000 0.00 0.00 0.00 4.09
6051 6528 1.100510 CGTCTATCAGGAACGGGACA 58.899 55.000 0.00 0.00 0.00 4.02
6056 6534 2.951229 ATCAGGAACGGGACAGTTTT 57.049 45.000 0.00 0.00 34.00 2.43
6057 6535 2.721425 TCAGGAACGGGACAGTTTTT 57.279 45.000 0.00 0.00 34.00 1.94
6109 6587 2.019984 GTTGGACTGATGGCATCTTCC 58.980 52.381 28.20 28.20 34.57 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.943835 GTTTTTGTGATGCGGTGGGC 60.944 55.000 0.00 0.00 43.96 5.36
27 30 6.677913 ACAGGTTATGTAGTTTTTGTGATGC 58.322 36.000 0.00 0.00 41.60 3.91
42 45 3.189287 GCCTCAACAGACAACAGGTTATG 59.811 47.826 0.00 0.00 0.00 1.90
63 66 6.479001 TGTTGTCTTTTACTACTGTCTCAAGC 59.521 38.462 0.00 0.00 35.21 4.01
73 76 7.148373 TGGAAGTTGTGTGTTGTCTTTTACTAC 60.148 37.037 0.00 0.00 34.80 2.73
116 119 3.925238 CCGCAACTACGATGCCGC 61.925 66.667 0.00 0.00 40.72 6.53
134 137 4.950062 TCGCATCGCATCCTCGGC 62.950 66.667 0.00 0.00 0.00 5.54
178 181 4.450757 GGTTCAATGGTAAAAACATGTGGC 59.549 41.667 0.00 0.00 0.00 5.01
184 187 6.940298 TGGTTTTTGGTTCAATGGTAAAAACA 59.060 30.769 19.06 7.44 45.69 2.83
186 189 6.940298 TGTGGTTTTTGGTTCAATGGTAAAAA 59.060 30.769 0.00 0.00 0.00 1.94
187 190 6.472887 TGTGGTTTTTGGTTCAATGGTAAAA 58.527 32.000 0.00 0.00 0.00 1.52
194 197 6.413892 ACAAATCTGTGGTTTTTGGTTCAAT 58.586 32.000 0.00 0.00 35.23 2.57
219 222 0.036306 TCTTTTTGGACTCCCGGCTC 59.964 55.000 0.00 0.00 34.29 4.70
228 231 6.158598 TGCTGCATTTAAGATCTTTTTGGAC 58.841 36.000 14.36 0.51 0.00 4.02
273 553 2.603560 GCTCCTGTATGCTCGTTTGTAC 59.396 50.000 0.00 0.00 0.00 2.90
389 669 0.673956 GTCCTCTCTTTTCCCGGTGC 60.674 60.000 0.00 0.00 0.00 5.01
435 715 5.510179 GCTTGCTCACATAATTATTGGCCAT 60.510 40.000 6.09 0.00 0.00 4.40
436 716 4.202141 GCTTGCTCACATAATTATTGGCCA 60.202 41.667 0.00 0.00 0.00 5.36
438 718 4.935702 TGCTTGCTCACATAATTATTGGC 58.064 39.130 0.00 5.20 0.00 4.52
440 720 4.980434 GCCTGCTTGCTCACATAATTATTG 59.020 41.667 0.00 0.00 0.00 1.90
441 721 4.038402 GGCCTGCTTGCTCACATAATTATT 59.962 41.667 0.00 0.00 0.00 1.40
442 722 3.571401 GGCCTGCTTGCTCACATAATTAT 59.429 43.478 0.00 0.00 0.00 1.28
443 723 2.951642 GGCCTGCTTGCTCACATAATTA 59.048 45.455 0.00 0.00 0.00 1.40
444 724 1.753073 GGCCTGCTTGCTCACATAATT 59.247 47.619 0.00 0.00 0.00 1.40
445 725 1.396653 GGCCTGCTTGCTCACATAAT 58.603 50.000 0.00 0.00 0.00 1.28
446 726 0.680921 GGGCCTGCTTGCTCACATAA 60.681 55.000 0.84 0.00 0.00 1.90
447 727 1.077501 GGGCCTGCTTGCTCACATA 60.078 57.895 0.84 0.00 0.00 2.29
448 728 2.362120 GGGCCTGCTTGCTCACAT 60.362 61.111 0.84 0.00 0.00 3.21
449 729 3.888460 TGGGCCTGCTTGCTCACA 61.888 61.111 4.53 0.00 36.64 3.58
452 732 4.704833 TCGTGGGCCTGCTTGCTC 62.705 66.667 4.53 0.00 0.00 4.26
535 827 3.825160 TTGTGGGGCGCACTCACTC 62.825 63.158 30.89 8.31 33.04 3.51
741 1038 2.692741 GGGGGTTAGGCTGAGGCT 60.693 66.667 14.55 14.55 42.39 4.58
1569 1871 1.378250 GGAGGACGACGAGGAGGAA 60.378 63.158 0.00 0.00 0.00 3.36
1578 1880 1.448922 CCGATGAGGAGGAGGACGAC 61.449 65.000 0.00 0.00 45.00 4.34
1581 1883 1.456705 AGCCGATGAGGAGGAGGAC 60.457 63.158 0.00 0.00 45.00 3.85
2535 2837 2.106338 TGAGCACCCAATGAACTCTGAA 59.894 45.455 0.00 0.00 0.00 3.02
2691 2993 3.627123 TCGACCAATAAGCAACATCATGG 59.373 43.478 0.00 0.00 0.00 3.66
2988 3290 6.880484 TCTCCCGCTGACAATAAAAACTATA 58.120 36.000 0.00 0.00 0.00 1.31
3104 3406 6.915300 CCAACATTATCAAGAAACGTGTCAAA 59.085 34.615 8.78 0.00 0.00 2.69
3295 3597 8.572855 AACATTCCAATTTCAGAAACCAAAAA 57.427 26.923 0.00 0.00 0.00 1.94
3575 3877 3.071602 AGCTCTTCAGGTGACTTAGCAAA 59.928 43.478 9.06 0.00 40.21 3.68
3622 3924 7.568199 AATAATTCGACCGATTCCAAGAAAT 57.432 32.000 0.00 0.00 0.00 2.17
3705 4009 7.120432 TGGTTGTTCCTTTTTGAGAAAATTTGG 59.880 33.333 0.00 0.00 34.45 3.28
3708 4012 8.806429 ATTGGTTGTTCCTTTTTGAGAAAATT 57.194 26.923 0.00 0.00 34.45 1.82
3810 4114 1.570024 TCAGCCATTTCCATCCATCCA 59.430 47.619 0.00 0.00 0.00 3.41
3963 4267 2.009681 TTGCCAGTACACTCTCCAGA 57.990 50.000 0.00 0.00 0.00 3.86
4166 4470 5.696724 GGGACTAATATGGAAACGACTGATG 59.303 44.000 0.00 0.00 0.00 3.07
4252 4558 5.048782 ACCGCACCTAACATAATTGCATATG 60.049 40.000 5.88 5.88 38.86 1.78
4253 4559 5.070001 ACCGCACCTAACATAATTGCATAT 58.930 37.500 0.00 0.00 32.51 1.78
4273 4579 3.855689 ATTTTCCAATGAGCAGAACCG 57.144 42.857 0.00 0.00 0.00 4.44
4345 4657 4.737855 ACAGGTCGTCAGCACTTATAAT 57.262 40.909 0.00 0.00 0.00 1.28
4375 4687 3.409026 AGCTCTTCTACAACCACAAGG 57.591 47.619 0.00 0.00 42.21 3.61
4655 4968 0.786435 AGGCAATTTTGAGAGGGGGT 59.214 50.000 0.00 0.00 0.00 4.95
4676 4989 7.499895 TGAGCATACATCACATATCAAACATGT 59.500 33.333 0.00 0.00 37.09 3.21
4808 5121 4.331137 CAATACACAATACAAAGTCGGCG 58.669 43.478 0.00 0.00 0.00 6.46
5055 5368 6.072286 CCACCAATATCAATTGAGGACATAGC 60.072 42.308 14.54 0.00 44.50 2.97
5086 5399 2.234168 GGTCTACCCCTTGACTGACTTC 59.766 54.545 0.00 0.00 34.01 3.01
5194 5507 7.862274 TCATTGAGTACCCATCTTCATATCT 57.138 36.000 0.00 0.00 0.00 1.98
5208 5521 5.224888 TGGTGTTAGTCGTTCATTGAGTAC 58.775 41.667 0.00 0.00 0.00 2.73
5240 5553 3.822735 TGCTTCTGCACTAGCTTCAAATT 59.177 39.130 14.46 0.00 45.31 1.82
5398 5711 2.486982 CAGTTCACTTGCCTTCCATGAG 59.513 50.000 0.00 0.00 0.00 2.90
5428 5741 1.668826 TCCCAAAGTGCCTATCACCT 58.331 50.000 0.00 0.00 46.81 4.00
5441 5754 3.205056 AGTGCCAATCCTATCATCCCAAA 59.795 43.478 0.00 0.00 0.00 3.28
5536 5849 7.272731 GCGACTTTAGACTTCAAAAACAAAACT 59.727 33.333 0.00 0.00 0.00 2.66
5547 5860 5.611796 TTACTACGCGACTTTAGACTTCA 57.388 39.130 15.93 0.00 0.00 3.02
5638 5952 4.230502 AGGAGGGAGAAATTATGGAGCAAA 59.769 41.667 0.00 0.00 0.00 3.68
5700 6014 5.297029 GCCACCATCAAGTTTAGAATCCTAC 59.703 44.000 0.00 0.00 0.00 3.18
5718 6032 2.136878 AATTTTGCCCGTGCCACCA 61.137 52.632 0.00 0.00 36.33 4.17
5795 6109 0.740737 AGCAAAGTGTCCACAGTTGC 59.259 50.000 21.63 21.63 46.23 4.17
5819 6133 4.331968 TGAAGGAACAAATTCGCCAGTAT 58.668 39.130 0.00 0.00 35.48 2.12
5877 6352 4.495184 CGTTGTTCAGCCGTTTTCTAAACT 60.495 41.667 0.00 0.00 0.00 2.66
5921 6396 5.264060 ACATCATCTGTTTTACGTTGTCG 57.736 39.130 0.00 0.00 37.74 4.35
5947 6424 5.856986 CCATGTCCACGATTCGTAGTATAAG 59.143 44.000 11.99 0.00 38.32 1.73
5951 6428 2.359848 CCCATGTCCACGATTCGTAGTA 59.640 50.000 11.99 0.00 38.32 1.82
5978 6455 3.807209 GCTCAGTTCTACCCACACAACAT 60.807 47.826 0.00 0.00 0.00 2.71
6001 6478 3.319755 CGCCCTTGTAGTTTAAGACGAA 58.680 45.455 0.00 0.00 30.95 3.85
6056 6534 1.001517 TCCAATGCTAGCCGCCAAA 60.002 52.632 13.29 0.00 38.05 3.28
6057 6535 1.748879 GTCCAATGCTAGCCGCCAA 60.749 57.895 13.29 0.00 38.05 4.52
6058 6536 2.124736 GTCCAATGCTAGCCGCCA 60.125 61.111 13.29 0.00 38.05 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.