Multiple sequence alignment - TraesCS3B01G323200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G323200 chr3B 100.000 3672 0 0 1 3672 522814107 522810436 0.000000e+00 6782
1 TraesCS3B01G323200 chr3B 95.773 3454 137 6 3 3452 522859712 522856264 0.000000e+00 5561
2 TraesCS3B01G323200 chr3B 94.562 3457 171 11 1 3451 292050425 292046980 0.000000e+00 5326
3 TraesCS3B01G323200 chr3B 94.473 3456 181 8 1 3452 292073752 292070303 0.000000e+00 5315
4 TraesCS3B01G323200 chr3B 88.222 3498 327 49 1 3452 309305032 309301574 0.000000e+00 4098
5 TraesCS3B01G323200 chr3B 92.774 1287 86 5 1 1286 291456924 291455644 0.000000e+00 1855
6 TraesCS3B01G323200 chr2B 94.881 3458 163 8 1 3452 148799280 148802729 0.000000e+00 5393
7 TraesCS3B01G323200 chr6B 94.761 3455 164 9 1 3452 176871146 176874586 0.000000e+00 5361
8 TraesCS3B01G323200 chr6B 92.685 2734 185 7 724 3452 245550896 245553619 0.000000e+00 3927
9 TraesCS3B01G323200 chr6B 92.457 2731 187 11 724 3451 245568684 245571398 0.000000e+00 3884
10 TraesCS3B01G323200 chr6B 94.170 223 9 3 3452 3672 623009255 623009475 1.630000e-88 337
11 TraesCS3B01G323200 chr2D 90.575 3236 244 27 260 3452 158730374 158727157 0.000000e+00 4229
12 TraesCS3B01G323200 chr2D 89.886 3233 251 30 260 3451 374249611 374246414 0.000000e+00 4089
13 TraesCS3B01G323200 chr2D 93.274 223 13 1 3452 3672 92298149 92298371 9.830000e-86 327
14 TraesCS3B01G323200 chr2D 93.243 222 11 3 3452 3670 603097405 603097625 1.270000e-84 324
15 TraesCS3B01G323200 chr4B 91.471 809 63 2 1 805 198667795 198666989 0.000000e+00 1107
16 TraesCS3B01G323200 chr4B 92.825 223 14 1 3452 3672 643393313 643393091 4.570000e-84 322
17 TraesCS3B01G323200 chr4A 86.477 599 54 12 1 574 334833351 334832755 1.860000e-177 632
18 TraesCS3B01G323200 chr5D 94.170 223 10 2 3452 3672 508551484 508551263 1.630000e-88 337
19 TraesCS3B01G323200 chr7B 93.722 223 12 1 3452 3672 90395119 90394897 2.110000e-87 333
20 TraesCS3B01G323200 chr7B 93.722 223 12 1 3452 3672 737593575 737593353 2.110000e-87 333
21 TraesCS3B01G323200 chr1B 93.274 223 13 1 3452 3672 540983909 540984131 9.830000e-86 327
22 TraesCS3B01G323200 chr5B 93.243 222 12 2 3453 3672 90939585 90939365 1.270000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G323200 chr3B 522810436 522814107 3671 True 6782 6782 100.000 1 3672 1 chr3B.!!$R5 3671
1 TraesCS3B01G323200 chr3B 522856264 522859712 3448 True 5561 5561 95.773 3 3452 1 chr3B.!!$R6 3449
2 TraesCS3B01G323200 chr3B 292046980 292050425 3445 True 5326 5326 94.562 1 3451 1 chr3B.!!$R2 3450
3 TraesCS3B01G323200 chr3B 292070303 292073752 3449 True 5315 5315 94.473 1 3452 1 chr3B.!!$R3 3451
4 TraesCS3B01G323200 chr3B 309301574 309305032 3458 True 4098 4098 88.222 1 3452 1 chr3B.!!$R4 3451
5 TraesCS3B01G323200 chr3B 291455644 291456924 1280 True 1855 1855 92.774 1 1286 1 chr3B.!!$R1 1285
6 TraesCS3B01G323200 chr2B 148799280 148802729 3449 False 5393 5393 94.881 1 3452 1 chr2B.!!$F1 3451
7 TraesCS3B01G323200 chr6B 176871146 176874586 3440 False 5361 5361 94.761 1 3452 1 chr6B.!!$F1 3451
8 TraesCS3B01G323200 chr6B 245550896 245553619 2723 False 3927 3927 92.685 724 3452 1 chr6B.!!$F2 2728
9 TraesCS3B01G323200 chr6B 245568684 245571398 2714 False 3884 3884 92.457 724 3451 1 chr6B.!!$F3 2727
10 TraesCS3B01G323200 chr2D 158727157 158730374 3217 True 4229 4229 90.575 260 3452 1 chr2D.!!$R1 3192
11 TraesCS3B01G323200 chr2D 374246414 374249611 3197 True 4089 4089 89.886 260 3451 1 chr2D.!!$R2 3191
12 TraesCS3B01G323200 chr4B 198666989 198667795 806 True 1107 1107 91.471 1 805 1 chr4B.!!$R1 804
13 TraesCS3B01G323200 chr4A 334832755 334833351 596 True 632 632 86.477 1 574 1 chr4A.!!$R1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 503 0.316204 GTGCAAGGCAAGCTTGTCAT 59.684 50.0 31.24 18.67 41.47 3.06 F
1111 1165 1.059584 TCCACCACCTCCAAGCAAGA 61.060 55.0 0.00 0.00 0.00 3.02 F
1518 1573 0.320697 GCCAAGTCTAGTTCGGTGGT 59.679 55.0 0.00 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1448 1.556484 CACGAACGACAACACGTCC 59.444 57.895 0.14 0.0 45.83 4.79 R
2230 2288 2.742372 GATGACACTTGCGCCGGT 60.742 61.111 4.18 0.0 0.00 5.28 R
3472 3581 0.461548 TGCACCGATCCAGATGACTC 59.538 55.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.162681 CCGGTGCAGAAGAAAGGAAAT 58.837 47.619 0.00 0.00 0.00 2.17
62 63 4.279420 AGAAGAAAGGAAATGTGACAAGGC 59.721 41.667 0.00 0.00 0.00 4.35
71 72 1.960417 TGTGACAAGGCACGAATCAA 58.040 45.000 1.04 0.00 41.63 2.57
79 80 6.016693 TGACAAGGCACGAATCAAATTTCTTA 60.017 34.615 0.00 0.00 0.00 2.10
97 98 6.650427 TTCTTAGACTGTACTCTTGCTTCA 57.350 37.500 0.00 0.00 0.00 3.02
163 164 4.323485 GGTGACTCCCAGATTGTGTATTGA 60.323 45.833 0.00 0.00 0.00 2.57
240 241 0.883833 CTTTCCGTTTGAGCCTGCAT 59.116 50.000 0.00 0.00 0.00 3.96
393 415 1.753930 TGAGTACTGCGGGTATTCGA 58.246 50.000 0.00 0.00 39.18 3.71
479 503 0.316204 GTGCAAGGCAAGCTTGTCAT 59.684 50.000 31.24 18.67 41.47 3.06
501 535 5.871396 TGTACATGCAAAACCCCTTTTTA 57.129 34.783 0.00 0.00 35.03 1.52
516 551 5.755861 CCCCTTTTTAATTTTTGAACGAGCA 59.244 36.000 0.00 0.00 0.00 4.26
517 552 6.426633 CCCCTTTTTAATTTTTGAACGAGCAT 59.573 34.615 0.00 0.00 0.00 3.79
947 1001 9.416794 CATGCCTAGTAGATAAACTTGTATCTG 57.583 37.037 0.00 0.00 40.35 2.90
1016 1070 2.268920 CATGGGACGGGGTGACAG 59.731 66.667 0.00 0.00 0.00 3.51
1111 1165 1.059584 TCCACCACCTCCAAGCAAGA 61.060 55.000 0.00 0.00 0.00 3.02
1133 1187 1.215382 GAAACCATTCCAAGGGCGC 59.785 57.895 0.00 0.00 31.82 6.53
1199 1253 3.150848 TGTACTGAAGTCGCATAGCAG 57.849 47.619 0.00 0.00 0.00 4.24
1252 1306 4.580580 ACCACAACTCAAAGAATTCTGACC 59.419 41.667 9.17 0.00 0.00 4.02
1393 1448 1.610038 TGCATGCAGGACAAACTTGAG 59.390 47.619 18.46 0.00 0.00 3.02
1518 1573 0.320697 GCCAAGTCTAGTTCGGTGGT 59.679 55.000 0.00 0.00 0.00 4.16
1566 1621 2.715046 TCCAGCTGCGAATTCTTCAAT 58.285 42.857 8.66 0.00 0.00 2.57
1693 1748 2.622436 GGTGCTATCAGTGACAAGGAC 58.378 52.381 16.34 16.34 0.00 3.85
1711 1766 2.752903 GGACGTTGGGATAACTGCAAAT 59.247 45.455 0.00 0.00 0.00 2.32
2679 2737 1.379176 CTCCTGAGTGAGGGAGCGA 60.379 63.158 0.00 0.00 43.06 4.93
2732 2793 9.681062 AAGCTGCACTTAAAAATAGGTTCTATA 57.319 29.630 1.02 0.00 36.62 1.31
2889 2957 0.182061 CATACTGGCCATGGAGCTGT 59.818 55.000 18.40 10.42 0.00 4.40
3321 3390 2.159382 TGCACTCCCGAAAATTCCTTC 58.841 47.619 0.00 0.00 0.00 3.46
3392 3496 5.368230 AGAGAGAGAGGAAAAAGAGTTGGTT 59.632 40.000 0.00 0.00 0.00 3.67
3401 3505 6.771267 AGGAAAAAGAGTTGGTTCGTATCTTT 59.229 34.615 0.00 0.00 40.87 2.52
3442 3551 7.793036 ACCTCTCTTCTTTAGTACAAAACTGT 58.207 34.615 0.00 0.00 39.39 3.55
3452 3561 9.567848 CTTTAGTACAAAACTGTGTCAAACAAT 57.432 29.630 0.00 0.00 39.39 2.71
3453 3562 8.903570 TTAGTACAAAACTGTGTCAAACAATG 57.096 30.769 0.00 0.00 39.39 2.82
3454 3563 6.919721 AGTACAAAACTGTGTCAAACAATGT 58.080 32.000 0.00 0.00 38.67 2.71
3455 3564 8.046294 AGTACAAAACTGTGTCAAACAATGTA 57.954 30.769 0.00 0.00 38.67 2.29
3456 3565 8.682710 AGTACAAAACTGTGTCAAACAATGTAT 58.317 29.630 0.00 0.00 38.67 2.29
3457 3566 7.985634 ACAAAACTGTGTCAAACAATGTATC 57.014 32.000 0.00 0.00 38.67 2.24
3458 3567 6.978080 ACAAAACTGTGTCAAACAATGTATCC 59.022 34.615 0.00 0.00 38.67 2.59
3459 3568 6.707440 AAACTGTGTCAAACAATGTATCCA 57.293 33.333 0.00 0.00 38.67 3.41
3460 3569 5.947228 ACTGTGTCAAACAATGTATCCAG 57.053 39.130 0.00 0.00 38.67 3.86
3461 3570 5.620206 ACTGTGTCAAACAATGTATCCAGA 58.380 37.500 0.00 0.00 38.67 3.86
3462 3571 6.240894 ACTGTGTCAAACAATGTATCCAGAT 58.759 36.000 0.00 0.00 38.67 2.90
3463 3572 6.716628 ACTGTGTCAAACAATGTATCCAGATT 59.283 34.615 0.00 0.00 38.67 2.40
3464 3573 6.912082 TGTGTCAAACAATGTATCCAGATTG 58.088 36.000 0.00 0.00 40.41 2.67
3465 3574 6.714356 TGTGTCAAACAATGTATCCAGATTGA 59.286 34.615 0.00 0.00 37.56 2.57
3466 3575 7.094677 TGTGTCAAACAATGTATCCAGATTGAG 60.095 37.037 0.00 0.00 37.56 3.02
3467 3576 7.119699 GTGTCAAACAATGTATCCAGATTGAGA 59.880 37.037 0.00 0.00 37.56 3.27
3468 3577 7.119699 TGTCAAACAATGTATCCAGATTGAGAC 59.880 37.037 0.00 0.00 37.56 3.36
3469 3578 7.335422 GTCAAACAATGTATCCAGATTGAGACT 59.665 37.037 0.00 0.00 37.56 3.24
3470 3579 7.884877 TCAAACAATGTATCCAGATTGAGACTT 59.115 33.333 0.00 0.00 37.56 3.01
3471 3580 9.166173 CAAACAATGTATCCAGATTGAGACTTA 57.834 33.333 0.00 0.00 37.56 2.24
3472 3581 8.954950 AACAATGTATCCAGATTGAGACTTAG 57.045 34.615 0.00 0.00 37.56 2.18
3473 3582 8.311395 ACAATGTATCCAGATTGAGACTTAGA 57.689 34.615 0.00 0.00 37.56 2.10
3474 3583 8.420222 ACAATGTATCCAGATTGAGACTTAGAG 58.580 37.037 0.00 0.00 37.56 2.43
3475 3584 8.420222 CAATGTATCCAGATTGAGACTTAGAGT 58.580 37.037 0.00 0.00 37.56 3.24
3476 3585 7.575414 TGTATCCAGATTGAGACTTAGAGTC 57.425 40.000 0.00 0.00 45.38 3.36
3487 3596 4.497473 GACTTAGAGTCATCTGGATCGG 57.503 50.000 3.33 0.00 44.45 4.18
3488 3597 3.886505 GACTTAGAGTCATCTGGATCGGT 59.113 47.826 3.33 0.00 44.45 4.69
3489 3598 3.634448 ACTTAGAGTCATCTGGATCGGTG 59.366 47.826 0.00 0.00 36.96 4.94
3490 3599 0.749649 AGAGTCATCTGGATCGGTGC 59.250 55.000 0.00 0.00 33.30 5.01
3491 3600 0.461548 GAGTCATCTGGATCGGTGCA 59.538 55.000 0.00 0.00 0.00 4.57
3492 3601 0.904649 AGTCATCTGGATCGGTGCAA 59.095 50.000 0.00 0.00 0.00 4.08
3493 3602 1.278985 AGTCATCTGGATCGGTGCAAA 59.721 47.619 0.00 0.00 0.00 3.68
3494 3603 2.083774 GTCATCTGGATCGGTGCAAAA 58.916 47.619 0.00 0.00 0.00 2.44
3495 3604 2.684881 GTCATCTGGATCGGTGCAAAAT 59.315 45.455 0.00 0.00 0.00 1.82
3496 3605 2.945008 TCATCTGGATCGGTGCAAAATC 59.055 45.455 0.00 0.00 0.00 2.17
3497 3606 2.787473 TCTGGATCGGTGCAAAATCT 57.213 45.000 0.00 0.00 0.00 2.40
3498 3607 3.071874 TCTGGATCGGTGCAAAATCTT 57.928 42.857 0.00 0.00 0.00 2.40
3499 3608 2.749076 TCTGGATCGGTGCAAAATCTTG 59.251 45.455 0.00 0.00 35.49 3.02
3510 3619 3.806316 CAAAATCTTGCCGACGTAACT 57.194 42.857 0.00 0.00 0.00 2.24
3511 3620 3.732943 CAAAATCTTGCCGACGTAACTC 58.267 45.455 0.00 0.00 0.00 3.01
3512 3621 3.314541 AAATCTTGCCGACGTAACTCT 57.685 42.857 0.00 0.00 0.00 3.24
3513 3622 3.314541 AATCTTGCCGACGTAACTCTT 57.685 42.857 0.00 0.00 0.00 2.85
3514 3623 2.806608 TCTTGCCGACGTAACTCTTT 57.193 45.000 0.00 0.00 0.00 2.52
3515 3624 3.921119 TCTTGCCGACGTAACTCTTTA 57.079 42.857 0.00 0.00 0.00 1.85
3516 3625 3.568538 TCTTGCCGACGTAACTCTTTAC 58.431 45.455 0.00 0.00 35.17 2.01
3533 3642 8.612233 ACTCTTTACGACGAACTATTTATCAC 57.388 34.615 0.00 0.00 0.00 3.06
3534 3643 7.699812 ACTCTTTACGACGAACTATTTATCACC 59.300 37.037 0.00 0.00 0.00 4.02
3535 3644 6.688385 TCTTTACGACGAACTATTTATCACCG 59.312 38.462 0.00 0.00 0.00 4.94
3536 3645 3.111098 ACGACGAACTATTTATCACCGC 58.889 45.455 0.00 0.00 0.00 5.68
3537 3646 2.470257 CGACGAACTATTTATCACCGCC 59.530 50.000 0.00 0.00 0.00 6.13
3538 3647 3.450578 GACGAACTATTTATCACCGCCA 58.549 45.455 0.00 0.00 0.00 5.69
3539 3648 4.056050 GACGAACTATTTATCACCGCCAT 58.944 43.478 0.00 0.00 0.00 4.40
3540 3649 4.056050 ACGAACTATTTATCACCGCCATC 58.944 43.478 0.00 0.00 0.00 3.51
3541 3650 4.055360 CGAACTATTTATCACCGCCATCA 58.945 43.478 0.00 0.00 0.00 3.07
3542 3651 4.084537 CGAACTATTTATCACCGCCATCAC 60.085 45.833 0.00 0.00 0.00 3.06
3543 3652 3.740115 ACTATTTATCACCGCCATCACC 58.260 45.455 0.00 0.00 0.00 4.02
3544 3653 1.593196 ATTTATCACCGCCATCACCG 58.407 50.000 0.00 0.00 0.00 4.94
3545 3654 0.537653 TTTATCACCGCCATCACCGA 59.462 50.000 0.00 0.00 0.00 4.69
3546 3655 0.104120 TTATCACCGCCATCACCGAG 59.896 55.000 0.00 0.00 0.00 4.63
3547 3656 0.753848 TATCACCGCCATCACCGAGA 60.754 55.000 0.00 0.00 0.00 4.04
3548 3657 1.613317 ATCACCGCCATCACCGAGAA 61.613 55.000 0.00 0.00 0.00 2.87
3549 3658 1.375396 CACCGCCATCACCGAGAAA 60.375 57.895 0.00 0.00 0.00 2.52
3550 3659 1.375523 ACCGCCATCACCGAGAAAC 60.376 57.895 0.00 0.00 0.00 2.78
3551 3660 1.375396 CCGCCATCACCGAGAAACA 60.375 57.895 0.00 0.00 0.00 2.83
3552 3661 0.744414 CCGCCATCACCGAGAAACAT 60.744 55.000 0.00 0.00 0.00 2.71
3553 3662 1.086696 CGCCATCACCGAGAAACATT 58.913 50.000 0.00 0.00 0.00 2.71
3554 3663 1.468520 CGCCATCACCGAGAAACATTT 59.531 47.619 0.00 0.00 0.00 2.32
3555 3664 2.476185 CGCCATCACCGAGAAACATTTC 60.476 50.000 0.00 0.00 37.45 2.17
3556 3665 2.159379 GCCATCACCGAGAAACATTTCC 60.159 50.000 0.68 0.00 37.92 3.13
3557 3666 3.347216 CCATCACCGAGAAACATTTCCT 58.653 45.455 0.68 0.00 37.92 3.36
3558 3667 3.375299 CCATCACCGAGAAACATTTCCTC 59.625 47.826 0.68 0.00 37.92 3.71
3559 3668 3.053831 TCACCGAGAAACATTTCCTCC 57.946 47.619 0.68 0.00 37.92 4.30
3560 3669 1.732259 CACCGAGAAACATTTCCTCCG 59.268 52.381 0.68 3.34 37.92 4.63
3561 3670 1.346722 ACCGAGAAACATTTCCTCCGT 59.653 47.619 0.68 0.00 37.92 4.69
3562 3671 2.000447 CCGAGAAACATTTCCTCCGTC 59.000 52.381 0.68 0.00 37.92 4.79
3563 3672 2.000447 CGAGAAACATTTCCTCCGTCC 59.000 52.381 0.68 0.00 37.92 4.79
3564 3673 2.353803 CGAGAAACATTTCCTCCGTCCT 60.354 50.000 0.68 0.00 37.92 3.85
3565 3674 3.263261 GAGAAACATTTCCTCCGTCCTC 58.737 50.000 0.68 0.00 37.92 3.71
3566 3675 2.637872 AGAAACATTTCCTCCGTCCTCA 59.362 45.455 0.68 0.00 37.92 3.86
3567 3676 2.474410 AACATTTCCTCCGTCCTCAC 57.526 50.000 0.00 0.00 0.00 3.51
3568 3677 1.645710 ACATTTCCTCCGTCCTCACT 58.354 50.000 0.00 0.00 0.00 3.41
3569 3678 2.816411 ACATTTCCTCCGTCCTCACTA 58.184 47.619 0.00 0.00 0.00 2.74
3570 3679 3.170717 ACATTTCCTCCGTCCTCACTAA 58.829 45.455 0.00 0.00 0.00 2.24
3571 3680 3.195825 ACATTTCCTCCGTCCTCACTAAG 59.804 47.826 0.00 0.00 0.00 2.18
3586 3695 6.049263 CTCACTAAGGATAATTTTGACCGC 57.951 41.667 0.00 0.00 0.00 5.68
3587 3696 4.879545 TCACTAAGGATAATTTTGACCGCC 59.120 41.667 0.00 0.00 0.00 6.13
3588 3697 3.875134 ACTAAGGATAATTTTGACCGCCG 59.125 43.478 0.00 0.00 0.00 6.46
3589 3698 2.413310 AGGATAATTTTGACCGCCGT 57.587 45.000 0.00 0.00 0.00 5.68
3590 3699 2.285977 AGGATAATTTTGACCGCCGTC 58.714 47.619 0.00 0.00 39.66 4.79
3591 3700 1.332686 GGATAATTTTGACCGCCGTCC 59.667 52.381 2.66 0.00 38.32 4.79
3592 3701 2.011222 GATAATTTTGACCGCCGTCCA 58.989 47.619 2.66 0.00 38.32 4.02
3593 3702 1.444836 TAATTTTGACCGCCGTCCAG 58.555 50.000 2.66 0.00 38.32 3.86
3594 3703 0.536460 AATTTTGACCGCCGTCCAGT 60.536 50.000 2.66 0.00 38.32 4.00
3595 3704 1.234615 ATTTTGACCGCCGTCCAGTG 61.235 55.000 2.66 0.00 38.32 3.66
3596 3705 2.313051 TTTTGACCGCCGTCCAGTGA 62.313 55.000 2.66 0.00 38.32 3.41
3597 3706 2.107041 TTTGACCGCCGTCCAGTGAT 62.107 55.000 2.66 0.00 38.32 3.06
3598 3707 2.202756 GACCGCCGTCCAGTGATC 60.203 66.667 0.00 0.00 32.40 2.92
3599 3708 2.680352 ACCGCCGTCCAGTGATCT 60.680 61.111 0.00 0.00 0.00 2.75
3600 3709 1.379443 ACCGCCGTCCAGTGATCTA 60.379 57.895 0.00 0.00 0.00 1.98
3601 3710 1.065928 CCGCCGTCCAGTGATCTAC 59.934 63.158 0.00 0.00 0.00 2.59
3602 3711 1.384989 CCGCCGTCCAGTGATCTACT 61.385 60.000 0.00 0.00 41.36 2.57
3603 3712 0.029567 CGCCGTCCAGTGATCTACTC 59.970 60.000 0.00 0.00 37.60 2.59
3604 3713 1.394618 GCCGTCCAGTGATCTACTCT 58.605 55.000 0.00 0.00 37.60 3.24
3605 3714 1.751924 GCCGTCCAGTGATCTACTCTT 59.248 52.381 0.00 0.00 37.60 2.85
3606 3715 2.950309 GCCGTCCAGTGATCTACTCTTA 59.050 50.000 0.00 0.00 37.60 2.10
3607 3716 3.003897 GCCGTCCAGTGATCTACTCTTAG 59.996 52.174 0.00 0.00 37.60 2.18
3608 3717 4.452825 CCGTCCAGTGATCTACTCTTAGA 58.547 47.826 0.00 0.00 37.60 2.10
3609 3718 5.067273 CCGTCCAGTGATCTACTCTTAGAT 58.933 45.833 0.00 0.00 46.17 1.98
3621 3730 7.278461 TCTACTCTTAGATCACTATTGTGCC 57.722 40.000 2.09 0.00 35.49 5.01
3622 3731 5.283457 ACTCTTAGATCACTATTGTGCCC 57.717 43.478 2.09 0.00 43.49 5.36
3623 3732 4.101741 ACTCTTAGATCACTATTGTGCCCC 59.898 45.833 2.09 0.00 43.49 5.80
3624 3733 3.391296 TCTTAGATCACTATTGTGCCCCC 59.609 47.826 2.09 0.00 43.49 5.40
3625 3734 1.898863 AGATCACTATTGTGCCCCCT 58.101 50.000 2.09 0.00 43.49 4.79
3626 3735 2.208872 AGATCACTATTGTGCCCCCTT 58.791 47.619 2.09 0.00 43.49 3.95
3627 3736 2.092212 AGATCACTATTGTGCCCCCTTG 60.092 50.000 2.09 0.00 43.49 3.61
3628 3737 1.072266 TCACTATTGTGCCCCCTTGT 58.928 50.000 2.09 0.00 43.49 3.16
3629 3738 1.004277 TCACTATTGTGCCCCCTTGTC 59.996 52.381 2.09 0.00 43.49 3.18
3630 3739 1.072266 ACTATTGTGCCCCCTTGTCA 58.928 50.000 0.00 0.00 0.00 3.58
3631 3740 1.427368 ACTATTGTGCCCCCTTGTCAA 59.573 47.619 0.00 0.00 0.00 3.18
3632 3741 2.158385 ACTATTGTGCCCCCTTGTCAAA 60.158 45.455 0.00 0.00 0.00 2.69
3633 3742 1.047801 ATTGTGCCCCCTTGTCAAAC 58.952 50.000 0.00 0.00 0.00 2.93
3634 3743 0.032615 TTGTGCCCCCTTGTCAAACT 60.033 50.000 0.00 0.00 0.00 2.66
3635 3744 0.467290 TGTGCCCCCTTGTCAAACTC 60.467 55.000 0.00 0.00 0.00 3.01
3636 3745 0.467290 GTGCCCCCTTGTCAAACTCA 60.467 55.000 0.00 0.00 0.00 3.41
3637 3746 0.482446 TGCCCCCTTGTCAAACTCAT 59.518 50.000 0.00 0.00 0.00 2.90
3638 3747 0.890683 GCCCCCTTGTCAAACTCATG 59.109 55.000 0.00 0.00 0.00 3.07
3639 3748 1.823250 GCCCCCTTGTCAAACTCATGT 60.823 52.381 0.00 0.00 0.00 3.21
3640 3749 2.162681 CCCCCTTGTCAAACTCATGTC 58.837 52.381 0.00 0.00 0.00 3.06
3641 3750 2.488891 CCCCCTTGTCAAACTCATGTCA 60.489 50.000 0.00 0.00 0.00 3.58
3642 3751 3.221771 CCCCTTGTCAAACTCATGTCAA 58.778 45.455 0.00 0.00 0.00 3.18
3643 3752 3.254166 CCCCTTGTCAAACTCATGTCAAG 59.746 47.826 7.13 7.13 42.37 3.02
3647 3756 5.990408 CTTGTCAAACTCATGTCAAGGTAC 58.010 41.667 6.44 0.00 40.46 3.34
3648 3757 5.029807 TGTCAAACTCATGTCAAGGTACA 57.970 39.130 0.00 0.00 0.00 2.90
3649 3758 4.814234 TGTCAAACTCATGTCAAGGTACAC 59.186 41.667 0.00 0.00 30.75 2.90
3650 3759 4.814234 GTCAAACTCATGTCAAGGTACACA 59.186 41.667 0.00 0.00 30.75 3.72
3651 3760 5.295787 GTCAAACTCATGTCAAGGTACACAA 59.704 40.000 0.00 0.00 30.75 3.33
3652 3761 6.017109 GTCAAACTCATGTCAAGGTACACAAT 60.017 38.462 0.00 0.00 30.75 2.71
3653 3762 7.172532 GTCAAACTCATGTCAAGGTACACAATA 59.827 37.037 0.00 0.00 30.75 1.90
3654 3763 7.387673 TCAAACTCATGTCAAGGTACACAATAG 59.612 37.037 0.00 0.00 30.75 1.73
3655 3764 5.734720 ACTCATGTCAAGGTACACAATAGG 58.265 41.667 0.00 0.00 30.75 2.57
3656 3765 5.248477 ACTCATGTCAAGGTACACAATAGGT 59.752 40.000 0.00 0.00 30.75 3.08
3657 3766 5.730550 TCATGTCAAGGTACACAATAGGTC 58.269 41.667 0.00 0.00 30.75 3.85
3658 3767 5.483937 TCATGTCAAGGTACACAATAGGTCT 59.516 40.000 0.00 0.00 30.75 3.85
3659 3768 5.147330 TGTCAAGGTACACAATAGGTCTG 57.853 43.478 0.00 0.00 0.00 3.51
3660 3769 4.020573 TGTCAAGGTACACAATAGGTCTGG 60.021 45.833 0.00 0.00 0.00 3.86
3661 3770 4.020485 GTCAAGGTACACAATAGGTCTGGT 60.020 45.833 0.00 0.00 0.00 4.00
3662 3771 5.186409 GTCAAGGTACACAATAGGTCTGGTA 59.814 44.000 0.00 0.00 0.00 3.25
3663 3772 5.186409 TCAAGGTACACAATAGGTCTGGTAC 59.814 44.000 0.00 0.00 0.00 3.34
3664 3773 4.680407 AGGTACACAATAGGTCTGGTACA 58.320 43.478 0.00 0.00 34.34 2.90
3665 3774 4.465305 AGGTACACAATAGGTCTGGTACAC 59.535 45.833 0.00 0.00 34.34 2.90
3666 3775 4.221262 GGTACACAATAGGTCTGGTACACA 59.779 45.833 0.00 0.00 34.34 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.960417 TTGATTCGTGCCTTGTCACA 58.040 45.000 0.00 0.00 36.80 3.58
62 63 8.926710 AGTACAGTCTAAGAAATTTGATTCGTG 58.073 33.333 0.00 0.00 34.46 4.35
71 72 8.150945 TGAAGCAAGAGTACAGTCTAAGAAATT 58.849 33.333 0.00 0.00 0.00 1.82
79 80 4.489810 CGAATGAAGCAAGAGTACAGTCT 58.510 43.478 0.00 0.00 0.00 3.24
163 164 5.364157 AGGATTTACTTAGCTCACGAAGGAT 59.636 40.000 0.00 0.00 33.22 3.24
240 241 4.825085 ACGCAAGATGGTTTCCTTTCTTTA 59.175 37.500 0.00 0.00 43.62 1.85
479 503 4.762289 AAAAAGGGGTTTTGCATGTACA 57.238 36.364 0.00 0.00 38.04 2.90
501 535 7.418840 TTTTGCATATGCTCGTTCAAAAATT 57.581 28.000 27.13 0.00 42.66 1.82
554 589 6.373216 GGTAATGCACAGGTAATGTACTTGAA 59.627 38.462 4.72 0.00 41.41 2.69
947 1001 6.803154 AATACAAAGTTAGCAGGAGACAAC 57.197 37.500 0.00 0.00 0.00 3.32
1016 1070 6.628185 TCTCTTGATCCGTACTTCTTTAACC 58.372 40.000 0.00 0.00 0.00 2.85
1062 1116 0.955428 CGCCTTTGCTGTTCCTGCTA 60.955 55.000 0.00 0.00 34.43 3.49
1072 1126 1.968540 GAGTTGAGCCGCCTTTGCT 60.969 57.895 0.00 0.00 43.03 3.91
1199 1253 2.506438 GCGTAGTCCGTGGCACTC 60.506 66.667 16.72 6.17 39.32 3.51
1232 1286 5.529060 GTCTGGTCAGAATTCTTTGAGTTGT 59.471 40.000 4.86 0.00 39.48 3.32
1393 1448 1.556484 CACGAACGACAACACGTCC 59.444 57.895 0.14 0.00 45.83 4.79
1566 1621 2.244117 GAGATCGCTCCCTGCCACAA 62.244 60.000 0.00 0.00 38.78 3.33
1693 1748 5.099575 GGTTTATTTGCAGTTATCCCAACG 58.900 41.667 0.00 0.00 0.00 4.10
1711 1766 2.675075 GCAGGCGGCCTTGGTTTA 60.675 61.111 21.26 0.00 36.11 2.01
1906 1964 4.039730 AGCAGAGTGTTTTCTCTAGCAAGA 59.960 41.667 14.85 0.00 42.10 3.02
2230 2288 2.742372 GATGACACTTGCGCCGGT 60.742 61.111 4.18 0.00 0.00 5.28
2679 2737 2.892852 GAGCAGTCCATGATCTCTAGCT 59.107 50.000 0.00 0.00 41.27 3.32
2889 2957 3.146066 GTTGTGGGAAGCTGATACAACA 58.854 45.455 21.63 3.32 46.19 3.33
3345 3427 7.713750 TCTCTTACGTGACTAATCCCTTAATG 58.286 38.462 0.00 0.00 0.00 1.90
3452 3561 7.119387 TGACTCTAAGTCTCAATCTGGATACA 58.881 38.462 8.44 0.00 45.27 2.29
3453 3562 7.575414 TGACTCTAAGTCTCAATCTGGATAC 57.425 40.000 8.44 0.00 45.27 2.24
3454 3563 8.224025 AGATGACTCTAAGTCTCAATCTGGATA 58.776 37.037 8.44 0.00 45.27 2.59
3455 3564 7.014518 CAGATGACTCTAAGTCTCAATCTGGAT 59.985 40.741 18.82 1.39 42.95 3.41
3456 3565 6.320926 CAGATGACTCTAAGTCTCAATCTGGA 59.679 42.308 18.82 0.00 42.95 3.86
3457 3566 6.506147 CAGATGACTCTAAGTCTCAATCTGG 58.494 44.000 18.82 8.25 42.95 3.86
3458 3567 6.320926 TCCAGATGACTCTAAGTCTCAATCTG 59.679 42.308 19.26 19.26 44.46 2.90
3459 3568 6.430864 TCCAGATGACTCTAAGTCTCAATCT 58.569 40.000 8.44 5.83 45.27 2.40
3460 3569 6.707440 TCCAGATGACTCTAAGTCTCAATC 57.293 41.667 8.44 3.88 45.27 2.67
3461 3570 6.016360 CGATCCAGATGACTCTAAGTCTCAAT 60.016 42.308 8.44 0.00 45.27 2.57
3462 3571 5.298026 CGATCCAGATGACTCTAAGTCTCAA 59.702 44.000 8.44 0.00 45.27 3.02
3463 3572 4.819088 CGATCCAGATGACTCTAAGTCTCA 59.181 45.833 8.44 0.00 45.27 3.27
3464 3573 4.215399 CCGATCCAGATGACTCTAAGTCTC 59.785 50.000 8.44 4.22 45.27 3.36
3465 3574 4.141287 CCGATCCAGATGACTCTAAGTCT 58.859 47.826 8.44 0.00 45.27 3.24
3466 3575 3.886505 ACCGATCCAGATGACTCTAAGTC 59.113 47.826 0.08 0.08 45.26 3.01
3467 3576 3.634448 CACCGATCCAGATGACTCTAAGT 59.366 47.826 0.00 0.00 0.00 2.24
3468 3577 3.551863 GCACCGATCCAGATGACTCTAAG 60.552 52.174 0.00 0.00 0.00 2.18
3469 3578 2.362397 GCACCGATCCAGATGACTCTAA 59.638 50.000 0.00 0.00 0.00 2.10
3470 3579 1.957177 GCACCGATCCAGATGACTCTA 59.043 52.381 0.00 0.00 0.00 2.43
3471 3580 0.749649 GCACCGATCCAGATGACTCT 59.250 55.000 0.00 0.00 0.00 3.24
3472 3581 0.461548 TGCACCGATCCAGATGACTC 59.538 55.000 0.00 0.00 0.00 3.36
3473 3582 0.904649 TTGCACCGATCCAGATGACT 59.095 50.000 0.00 0.00 0.00 3.41
3474 3583 1.737838 TTTGCACCGATCCAGATGAC 58.262 50.000 0.00 0.00 0.00 3.06
3475 3584 2.488204 TTTTGCACCGATCCAGATGA 57.512 45.000 0.00 0.00 0.00 2.92
3476 3585 2.947652 AGATTTTGCACCGATCCAGATG 59.052 45.455 0.00 0.00 0.00 2.90
3477 3586 3.287867 AGATTTTGCACCGATCCAGAT 57.712 42.857 0.00 0.00 0.00 2.90
3478 3587 2.749076 CAAGATTTTGCACCGATCCAGA 59.251 45.455 0.00 0.00 0.00 3.86
3479 3588 3.141002 CAAGATTTTGCACCGATCCAG 57.859 47.619 0.00 0.00 0.00 3.86
3490 3599 3.432252 AGAGTTACGTCGGCAAGATTTTG 59.568 43.478 0.00 0.00 37.36 2.44
3491 3600 3.660865 AGAGTTACGTCGGCAAGATTTT 58.339 40.909 0.00 0.00 0.00 1.82
3492 3601 3.314541 AGAGTTACGTCGGCAAGATTT 57.685 42.857 0.00 0.00 0.00 2.17
3493 3602 3.314541 AAGAGTTACGTCGGCAAGATT 57.685 42.857 0.00 0.00 0.00 2.40
3494 3603 3.314541 AAAGAGTTACGTCGGCAAGAT 57.685 42.857 0.00 0.00 0.00 2.40
3495 3604 2.806608 AAAGAGTTACGTCGGCAAGA 57.193 45.000 0.00 0.00 0.00 3.02
3496 3605 3.967080 GTAAAGAGTTACGTCGGCAAG 57.033 47.619 0.00 0.00 30.76 4.01
3507 3616 9.070149 GTGATAAATAGTTCGTCGTAAAGAGTT 57.930 33.333 0.00 0.00 0.00 3.01
3508 3617 7.699812 GGTGATAAATAGTTCGTCGTAAAGAGT 59.300 37.037 0.00 0.00 0.00 3.24
3509 3618 7.097128 CGGTGATAAATAGTTCGTCGTAAAGAG 60.097 40.741 0.00 0.00 0.00 2.85
3510 3619 6.688385 CGGTGATAAATAGTTCGTCGTAAAGA 59.312 38.462 0.00 0.00 0.00 2.52
3511 3620 6.559158 GCGGTGATAAATAGTTCGTCGTAAAG 60.559 42.308 0.00 0.00 0.00 1.85
3512 3621 5.229887 GCGGTGATAAATAGTTCGTCGTAAA 59.770 40.000 0.00 0.00 0.00 2.01
3513 3622 4.734854 GCGGTGATAAATAGTTCGTCGTAA 59.265 41.667 0.00 0.00 0.00 3.18
3514 3623 4.282068 GCGGTGATAAATAGTTCGTCGTA 58.718 43.478 0.00 0.00 0.00 3.43
3515 3624 3.111098 GCGGTGATAAATAGTTCGTCGT 58.889 45.455 0.00 0.00 0.00 4.34
3516 3625 2.470257 GGCGGTGATAAATAGTTCGTCG 59.530 50.000 0.00 0.00 0.00 5.12
3517 3626 3.450578 TGGCGGTGATAAATAGTTCGTC 58.549 45.455 0.00 0.00 0.00 4.20
3518 3627 3.530265 TGGCGGTGATAAATAGTTCGT 57.470 42.857 0.00 0.00 0.00 3.85
3519 3628 4.055360 TGATGGCGGTGATAAATAGTTCG 58.945 43.478 0.00 0.00 0.00 3.95
3520 3629 4.213482 GGTGATGGCGGTGATAAATAGTTC 59.787 45.833 0.00 0.00 0.00 3.01
3521 3630 4.134563 GGTGATGGCGGTGATAAATAGTT 58.865 43.478 0.00 0.00 0.00 2.24
3522 3631 3.740115 GGTGATGGCGGTGATAAATAGT 58.260 45.455 0.00 0.00 0.00 2.12
3523 3632 2.736721 CGGTGATGGCGGTGATAAATAG 59.263 50.000 0.00 0.00 0.00 1.73
3524 3633 2.365941 TCGGTGATGGCGGTGATAAATA 59.634 45.455 0.00 0.00 0.00 1.40
3525 3634 1.140052 TCGGTGATGGCGGTGATAAAT 59.860 47.619 0.00 0.00 0.00 1.40
3526 3635 0.537653 TCGGTGATGGCGGTGATAAA 59.462 50.000 0.00 0.00 0.00 1.40
3527 3636 0.104120 CTCGGTGATGGCGGTGATAA 59.896 55.000 0.00 0.00 0.00 1.75
3528 3637 0.753848 TCTCGGTGATGGCGGTGATA 60.754 55.000 0.00 0.00 0.00 2.15
3529 3638 1.613317 TTCTCGGTGATGGCGGTGAT 61.613 55.000 0.00 0.00 0.00 3.06
3530 3639 1.822114 TTTCTCGGTGATGGCGGTGA 61.822 55.000 0.00 0.00 0.00 4.02
3531 3640 1.375396 TTTCTCGGTGATGGCGGTG 60.375 57.895 0.00 0.00 0.00 4.94
3532 3641 1.375523 GTTTCTCGGTGATGGCGGT 60.376 57.895 0.00 0.00 0.00 5.68
3533 3642 0.744414 ATGTTTCTCGGTGATGGCGG 60.744 55.000 0.00 0.00 0.00 6.13
3534 3643 1.086696 AATGTTTCTCGGTGATGGCG 58.913 50.000 0.00 0.00 0.00 5.69
3535 3644 2.159379 GGAAATGTTTCTCGGTGATGGC 60.159 50.000 5.56 0.00 37.35 4.40
3536 3645 3.347216 AGGAAATGTTTCTCGGTGATGG 58.653 45.455 5.56 0.00 37.35 3.51
3537 3646 3.375299 GGAGGAAATGTTTCTCGGTGATG 59.625 47.826 5.56 0.00 37.35 3.07
3538 3647 3.610911 GGAGGAAATGTTTCTCGGTGAT 58.389 45.455 5.56 0.00 37.35 3.06
3539 3648 2.611971 CGGAGGAAATGTTTCTCGGTGA 60.612 50.000 5.56 0.00 37.35 4.02
3540 3649 1.732259 CGGAGGAAATGTTTCTCGGTG 59.268 52.381 5.56 0.00 37.35 4.94
3541 3650 1.346722 ACGGAGGAAATGTTTCTCGGT 59.653 47.619 4.19 4.19 37.35 4.69
3542 3651 2.000447 GACGGAGGAAATGTTTCTCGG 59.000 52.381 5.56 3.29 37.35 4.63
3543 3652 2.000447 GGACGGAGGAAATGTTTCTCG 59.000 52.381 5.56 9.15 37.35 4.04
3544 3653 3.263261 GAGGACGGAGGAAATGTTTCTC 58.737 50.000 5.56 0.00 37.35 2.87
3545 3654 2.637872 TGAGGACGGAGGAAATGTTTCT 59.362 45.455 5.56 0.00 37.35 2.52
3546 3655 2.742589 GTGAGGACGGAGGAAATGTTTC 59.257 50.000 0.00 0.00 36.46 2.78
3547 3656 2.372172 AGTGAGGACGGAGGAAATGTTT 59.628 45.455 0.00 0.00 0.00 2.83
3548 3657 1.978580 AGTGAGGACGGAGGAAATGTT 59.021 47.619 0.00 0.00 0.00 2.71
3549 3658 1.645710 AGTGAGGACGGAGGAAATGT 58.354 50.000 0.00 0.00 0.00 2.71
3550 3659 3.786635 CTTAGTGAGGACGGAGGAAATG 58.213 50.000 0.00 0.00 0.00 2.32
3563 3672 5.007724 GGCGGTCAAAATTATCCTTAGTGAG 59.992 44.000 0.00 0.00 0.00 3.51
3564 3673 4.879545 GGCGGTCAAAATTATCCTTAGTGA 59.120 41.667 0.00 0.00 0.00 3.41
3565 3674 4.260620 CGGCGGTCAAAATTATCCTTAGTG 60.261 45.833 0.00 0.00 0.00 2.74
3566 3675 3.875134 CGGCGGTCAAAATTATCCTTAGT 59.125 43.478 0.00 0.00 0.00 2.24
3567 3676 3.875134 ACGGCGGTCAAAATTATCCTTAG 59.125 43.478 13.24 0.00 0.00 2.18
3568 3677 3.872771 GACGGCGGTCAAAATTATCCTTA 59.127 43.478 18.61 0.00 42.91 2.69
3569 3678 2.681344 GACGGCGGTCAAAATTATCCTT 59.319 45.455 18.61 0.00 42.91 3.36
3570 3679 2.285977 GACGGCGGTCAAAATTATCCT 58.714 47.619 18.61 0.00 42.91 3.24
3571 3680 1.332686 GGACGGCGGTCAAAATTATCC 59.667 52.381 23.82 0.25 45.28 2.59
3572 3681 2.011222 TGGACGGCGGTCAAAATTATC 58.989 47.619 23.82 6.44 45.28 1.75
3573 3682 2.014128 CTGGACGGCGGTCAAAATTAT 58.986 47.619 23.82 0.00 45.28 1.28
3574 3683 1.270947 ACTGGACGGCGGTCAAAATTA 60.271 47.619 23.82 4.24 45.28 1.40
3575 3684 0.536460 ACTGGACGGCGGTCAAAATT 60.536 50.000 23.82 3.02 45.28 1.82
3576 3685 1.072505 ACTGGACGGCGGTCAAAAT 59.927 52.632 23.82 3.36 45.28 1.82
3577 3686 1.890041 CACTGGACGGCGGTCAAAA 60.890 57.895 23.82 9.53 45.28 2.44
3578 3687 2.107041 ATCACTGGACGGCGGTCAAA 62.107 55.000 23.82 11.79 45.28 2.69
3579 3688 2.501223 GATCACTGGACGGCGGTCAA 62.501 60.000 23.82 13.61 45.28 3.18
3580 3689 2.994995 ATCACTGGACGGCGGTCA 60.995 61.111 23.82 8.11 45.28 4.02
3581 3690 1.381928 TAGATCACTGGACGGCGGTC 61.382 60.000 15.59 15.59 42.66 4.79
3582 3691 1.379443 TAGATCACTGGACGGCGGT 60.379 57.895 13.24 0.00 0.00 5.68
3583 3692 1.065928 GTAGATCACTGGACGGCGG 59.934 63.158 13.24 0.00 0.00 6.13
3584 3693 0.029567 GAGTAGATCACTGGACGGCG 59.970 60.000 4.80 4.80 37.72 6.46
3585 3694 1.394618 AGAGTAGATCACTGGACGGC 58.605 55.000 0.00 0.00 37.72 5.68
3586 3695 4.452825 TCTAAGAGTAGATCACTGGACGG 58.547 47.826 0.00 0.00 37.72 4.79
3611 3720 1.072266 TGACAAGGGGGCACAATAGT 58.928 50.000 0.00 0.00 0.00 2.12
3612 3721 2.214376 TTGACAAGGGGGCACAATAG 57.786 50.000 0.00 0.00 0.00 1.73
3613 3722 2.158385 AGTTTGACAAGGGGGCACAATA 60.158 45.455 0.00 0.00 0.00 1.90
3614 3723 1.047801 GTTTGACAAGGGGGCACAAT 58.952 50.000 0.00 0.00 0.00 2.71
3615 3724 0.032615 AGTTTGACAAGGGGGCACAA 60.033 50.000 0.00 0.00 0.00 3.33
3616 3725 0.467290 GAGTTTGACAAGGGGGCACA 60.467 55.000 0.00 0.00 0.00 4.57
3617 3726 0.467290 TGAGTTTGACAAGGGGGCAC 60.467 55.000 0.00 0.00 0.00 5.01
3618 3727 0.482446 ATGAGTTTGACAAGGGGGCA 59.518 50.000 0.00 0.00 0.00 5.36
3619 3728 0.890683 CATGAGTTTGACAAGGGGGC 59.109 55.000 0.00 0.00 0.00 5.80
3620 3729 2.162681 GACATGAGTTTGACAAGGGGG 58.837 52.381 0.00 0.00 0.00 5.40
3621 3730 2.862541 TGACATGAGTTTGACAAGGGG 58.137 47.619 0.00 0.00 0.00 4.79
3622 3731 4.494350 CTTGACATGAGTTTGACAAGGG 57.506 45.455 0.00 0.00 42.08 3.95
3624 3733 5.527214 TGTACCTTGACATGAGTTTGACAAG 59.473 40.000 0.00 8.87 43.96 3.16
3625 3734 5.295787 GTGTACCTTGACATGAGTTTGACAA 59.704 40.000 0.00 0.00 32.03 3.18
3626 3735 4.814234 GTGTACCTTGACATGAGTTTGACA 59.186 41.667 0.00 0.00 0.00 3.58
3627 3736 4.814234 TGTGTACCTTGACATGAGTTTGAC 59.186 41.667 0.00 0.00 0.00 3.18
3628 3737 5.029807 TGTGTACCTTGACATGAGTTTGA 57.970 39.130 0.00 0.00 0.00 2.69
3629 3738 5.749596 TTGTGTACCTTGACATGAGTTTG 57.250 39.130 0.00 0.00 0.00 2.93
3630 3739 6.655003 CCTATTGTGTACCTTGACATGAGTTT 59.345 38.462 0.00 0.00 0.00 2.66
3631 3740 6.173339 CCTATTGTGTACCTTGACATGAGTT 58.827 40.000 0.00 0.00 0.00 3.01
3632 3741 5.248477 ACCTATTGTGTACCTTGACATGAGT 59.752 40.000 0.00 0.00 0.00 3.41
3633 3742 5.734720 ACCTATTGTGTACCTTGACATGAG 58.265 41.667 0.00 0.00 0.00 2.90
3634 3743 5.483937 AGACCTATTGTGTACCTTGACATGA 59.516 40.000 0.00 0.00 0.00 3.07
3635 3744 5.582269 CAGACCTATTGTGTACCTTGACATG 59.418 44.000 0.00 0.00 0.00 3.21
3636 3745 5.338381 CCAGACCTATTGTGTACCTTGACAT 60.338 44.000 0.00 0.00 0.00 3.06
3637 3746 4.020573 CCAGACCTATTGTGTACCTTGACA 60.021 45.833 0.00 0.00 0.00 3.58
3638 3747 4.020485 ACCAGACCTATTGTGTACCTTGAC 60.020 45.833 0.00 0.00 0.00 3.18
3639 3748 4.164981 ACCAGACCTATTGTGTACCTTGA 58.835 43.478 0.00 0.00 0.00 3.02
3640 3749 4.553330 ACCAGACCTATTGTGTACCTTG 57.447 45.455 0.00 0.00 0.00 3.61
3641 3750 5.046807 GTGTACCAGACCTATTGTGTACCTT 60.047 44.000 0.00 0.00 0.00 3.50
3642 3751 4.465305 GTGTACCAGACCTATTGTGTACCT 59.535 45.833 0.00 0.00 0.00 3.08
3643 3752 4.221262 TGTGTACCAGACCTATTGTGTACC 59.779 45.833 0.00 0.00 0.00 3.34
3644 3753 5.395682 TGTGTACCAGACCTATTGTGTAC 57.604 43.478 0.00 0.00 0.00 2.90
3645 3754 4.081862 GCTGTGTACCAGACCTATTGTGTA 60.082 45.833 13.57 0.00 44.49 2.90
3646 3755 3.306780 GCTGTGTACCAGACCTATTGTGT 60.307 47.826 13.57 0.00 44.49 3.72
3647 3756 3.262420 GCTGTGTACCAGACCTATTGTG 58.738 50.000 13.57 0.00 44.49 3.33
3648 3757 2.903784 TGCTGTGTACCAGACCTATTGT 59.096 45.455 13.57 0.00 44.49 2.71
3649 3758 3.262420 GTGCTGTGTACCAGACCTATTG 58.738 50.000 13.57 0.00 44.49 1.90
3650 3759 2.903784 TGTGCTGTGTACCAGACCTATT 59.096 45.455 13.57 0.00 44.49 1.73
3651 3760 2.536066 TGTGCTGTGTACCAGACCTAT 58.464 47.619 13.57 0.00 44.49 2.57
3652 3761 2.003937 TGTGCTGTGTACCAGACCTA 57.996 50.000 13.57 0.00 44.49 3.08
3653 3762 2.834631 TGTGCTGTGTACCAGACCT 58.165 52.632 13.57 0.00 44.49 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.