Multiple sequence alignment - TraesCS3B01G323100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G323100 chr3B 100.000 7781 0 0 1 7781 522791681 522783901 0.000000e+00 14369.0
1 TraesCS3B01G323100 chr3B 93.274 565 35 1 2072 2636 522789423 522788862 0.000000e+00 830.0
2 TraesCS3B01G323100 chr3B 93.274 565 35 1 2259 2820 522789610 522789046 0.000000e+00 830.0
3 TraesCS3B01G323100 chr3B 91.005 378 31 1 2072 2449 522789236 522788862 2.510000e-139 507.0
4 TraesCS3B01G323100 chr3B 91.005 378 31 1 2446 2820 522789610 522789233 2.510000e-139 507.0
5 TraesCS3B01G323100 chr3B 90.052 191 16 1 2072 2262 522789049 522788862 2.170000e-60 244.0
6 TraesCS3B01G323100 chr3B 90.052 191 16 1 2633 2820 522789610 522789420 2.170000e-60 244.0
7 TraesCS3B01G323100 chr3D 94.761 3207 97 21 4392 7547 397165890 397162704 0.000000e+00 4926.0
8 TraesCS3B01G323100 chr3D 95.577 2148 68 8 2259 4403 397168045 397165922 0.000000e+00 3415.0
9 TraesCS3B01G323100 chr3D 92.879 1938 89 22 710 2636 397169382 397167483 0.000000e+00 2769.0
10 TraesCS3B01G323100 chr3D 85.452 708 58 19 17 715 397170093 397169422 0.000000e+00 695.0
11 TraesCS3B01G323100 chr3D 91.534 378 29 2 2446 2820 397168045 397167668 1.160000e-142 518.0
12 TraesCS3B01G323100 chr3D 89.974 379 34 2 2072 2449 397167858 397167483 3.260000e-133 486.0
13 TraesCS3B01G323100 chr3D 94.093 237 4 3 7545 7781 397162547 397162321 1.240000e-92 351.0
14 TraesCS3B01G323100 chr3D 89.062 192 17 2 2072 2262 397167671 397167483 1.310000e-57 235.0
15 TraesCS3B01G323100 chr3A 93.992 2713 99 22 4412 7080 516640410 516637718 0.000000e+00 4048.0
16 TraesCS3B01G323100 chr3A 95.533 2015 81 4 2343 4355 516642564 516640557 0.000000e+00 3214.0
17 TraesCS3B01G323100 chr3A 93.153 1475 58 20 710 2157 516644058 516642600 0.000000e+00 2124.0
18 TraesCS3B01G323100 chr3A 96.333 600 17 3 7077 7676 516637462 516636868 0.000000e+00 981.0
19 TraesCS3B01G323100 chr3A 91.476 481 35 2 2156 2636 516642564 516642090 0.000000e+00 656.0
20 TraesCS3B01G323100 chr3A 83.498 709 67 12 2 708 516718319 516717659 3.990000e-172 616.0
21 TraesCS3B01G323100 chr3A 90.212 378 31 3 2072 2449 516642461 516642090 9.070000e-134 488.0
22 TraesCS3B01G323100 chr3A 96.503 286 10 0 2533 2818 516642561 516642276 2.540000e-129 473.0
23 TraesCS3B01G323100 chr3A 93.519 108 7 0 2713 2820 516642565 516642458 2.250000e-35 161.0
24 TraesCS3B01G323100 chr3A 95.890 73 1 2 7710 7781 516636876 516636805 4.930000e-22 117.0
25 TraesCS3B01G323100 chr3A 90.805 87 7 1 2446 2531 516642686 516642600 1.770000e-21 115.0
26 TraesCS3B01G323100 chr3A 90.805 87 7 1 2259 2344 516642686 516642600 1.770000e-21 115.0
27 TraesCS3B01G323100 chr7B 88.951 1611 115 28 5962 7548 255561651 255560080 0.000000e+00 1930.0
28 TraesCS3B01G323100 chr4B 96.774 62 2 0 7304 7365 97058786 97058725 3.840000e-18 104.0
29 TraesCS3B01G323100 chr6D 89.091 55 2 4 6918 6971 178863376 178863427 1.810000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G323100 chr3B 522783901 522791681 7780 True 2504.428571 14369 92.666000 1 7781 7 chr3B.!!$R1 7780
1 TraesCS3B01G323100 chr3D 397162321 397170093 7772 True 1674.375000 4926 91.666500 17 7781 8 chr3D.!!$R1 7764
2 TraesCS3B01G323100 chr3A 516636805 516644058 7253 True 1135.636364 4048 93.474636 710 7781 11 chr3A.!!$R2 7071
3 TraesCS3B01G323100 chr3A 516717659 516718319 660 True 616.000000 616 83.498000 2 708 1 chr3A.!!$R1 706
4 TraesCS3B01G323100 chr7B 255560080 255561651 1571 True 1930.000000 1930 88.951000 5962 7548 1 chr7B.!!$R1 1586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 735 0.101040 GCTACCGCCGTGTACACATA 59.899 55.0 24.98 8.39 0.00 2.29 F
1366 1462 0.179012 GTACGAGGAGGAGGAGGAGG 60.179 65.0 0.00 0.00 0.00 4.30 F
1367 1463 0.327287 TACGAGGAGGAGGAGGAGGA 60.327 60.0 0.00 0.00 0.00 3.71 F
2404 2542 0.402121 ACAAGGAGGCCAAGAAGTCC 59.598 55.0 5.01 0.89 0.00 3.85 F
2419 2557 0.537653 AGTCCTTTTAGAGCTCGGGC 59.462 55.0 8.37 0.00 39.06 6.13 F
3810 3949 0.607620 AGAAGCAGTGAGTGGCTCTC 59.392 55.0 9.57 9.57 40.01 3.20 F
4212 4351 0.960364 AAGTGCGTATGGGCCAAGTG 60.960 55.0 11.89 3.78 0.00 3.16 F
5112 5367 0.898320 GTGCTGAAGGCCTCTCTGTA 59.102 55.0 5.23 7.09 40.92 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 2523 0.402121 GGACTTCTTGGCCTCCTTGT 59.598 55.000 3.32 0.00 41.93 3.16 R
2400 2538 0.537653 GCCCGAGCTCTAAAAGGACT 59.462 55.000 12.85 0.00 35.50 3.85 R
3324 3463 0.822121 GGGGGTTCTTGCTTTGACGT 60.822 55.000 0.00 0.00 0.00 4.34 R
4176 4315 1.012841 CTTCTGGAGCTCCAAATCGC 58.987 55.000 34.30 6.93 46.97 4.58 R
4212 4351 3.810310 AGCAGATAGGCTACAGTTGAC 57.190 47.619 0.00 0.00 43.70 3.18 R
5112 5367 1.214175 TCCGTGGATACCATGCCAAAT 59.786 47.619 4.65 0.00 39.07 2.32 R
5115 5370 1.346395 GTATCCGTGGATACCATGCCA 59.654 52.381 22.94 0.00 46.68 4.92 R
6871 7175 1.939934 TGTGCGCTATAATTGACAGCC 59.060 47.619 9.73 0.00 31.43 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.034626 CGAAATCACAAACACAGTACACCA 59.965 41.667 0.00 0.00 0.00 4.17
67 68 6.326375 TCACAAACACAGTACACCAATTTTC 58.674 36.000 0.00 0.00 0.00 2.29
68 69 6.151985 TCACAAACACAGTACACCAATTTTCT 59.848 34.615 0.00 0.00 0.00 2.52
79 80 6.607735 ACACCAATTTTCTTTTGCTTCATG 57.392 33.333 0.00 0.00 0.00 3.07
113 134 1.424638 GCTGGATAGCTAGGGTTGGA 58.575 55.000 0.00 0.00 46.57 3.53
114 135 1.346068 GCTGGATAGCTAGGGTTGGAG 59.654 57.143 0.00 0.00 46.57 3.86
115 136 1.346068 CTGGATAGCTAGGGTTGGAGC 59.654 57.143 0.00 0.00 39.08 4.70
122 143 3.118905 GCTAGGGTTGGAGCTGAATAG 57.881 52.381 0.00 0.00 35.73 1.73
148 169 3.491964 GGGTTTTGAGCAACTTACCCAAC 60.492 47.826 16.49 3.90 43.73 3.77
154 175 0.965439 GCAACTTACCCAACCATGCA 59.035 50.000 0.00 0.00 32.80 3.96
164 185 0.737219 CAACCATGCAAGGAGCTAGC 59.263 55.000 16.33 6.62 45.94 3.42
197 218 3.921104 AGCAGAGAATACAGGAGGATCA 58.079 45.455 0.00 0.00 36.25 2.92
213 234 1.841302 ATCACGGAGCTCCCTTGCAA 61.841 55.000 27.20 9.68 34.41 4.08
221 242 0.538287 GCTCCCTTGCAACTCCAGTT 60.538 55.000 0.00 0.00 39.12 3.16
224 245 1.064017 TCCCTTGCAACTCCAGTTTGT 60.064 47.619 0.00 0.00 35.83 2.83
288 309 2.981302 CACTGGATGGAGCACCGA 59.019 61.111 0.00 0.00 39.42 4.69
301 322 1.576421 CACCGAAGCTTCAAGCCAC 59.424 57.895 25.47 0.00 43.77 5.01
303 324 1.667830 CCGAAGCTTCAAGCCACGA 60.668 57.895 25.47 0.00 43.77 4.35
337 358 1.305802 ACCACACTATGCGGGGAGA 60.306 57.895 0.00 0.00 0.00 3.71
370 393 3.675619 AAGGTGTACGGGGCGATGC 62.676 63.158 0.00 0.00 0.00 3.91
406 429 2.279517 CGGTGGTAGAGGCGATGC 60.280 66.667 0.00 0.00 0.00 3.91
418 441 3.112075 CGATGCTGCGTCGGTGTT 61.112 61.111 30.87 0.00 38.96 3.32
433 456 2.436115 GTTGGCGGTGGTAGAGGC 60.436 66.667 0.00 0.00 0.00 4.70
434 457 4.077184 TTGGCGGTGGTAGAGGCG 62.077 66.667 0.00 0.00 0.00 5.52
436 459 3.537874 GGCGGTGGTAGAGGCGAT 61.538 66.667 0.00 0.00 0.00 4.58
437 460 2.279517 GCGGTGGTAGAGGCGATG 60.280 66.667 0.00 0.00 0.00 3.84
438 461 2.417516 CGGTGGTAGAGGCGATGG 59.582 66.667 0.00 0.00 0.00 3.51
439 462 2.423898 CGGTGGTAGAGGCGATGGT 61.424 63.158 0.00 0.00 0.00 3.55
440 463 1.144057 GGTGGTAGAGGCGATGGTG 59.856 63.158 0.00 0.00 0.00 4.17
441 464 1.521681 GTGGTAGAGGCGATGGTGC 60.522 63.158 0.00 0.00 0.00 5.01
442 465 2.279517 GGTAGAGGCGATGGTGCG 60.280 66.667 0.00 0.00 35.06 5.34
443 466 2.494918 GTAGAGGCGATGGTGCGT 59.505 61.111 0.00 0.00 35.06 5.24
470 493 2.309764 GATGGTGCATTGGCGACGAC 62.310 60.000 0.00 0.00 45.35 4.34
477 500 1.121240 CATTGGCGACGACGATCTAC 58.879 55.000 12.29 0.00 42.66 2.59
486 509 1.202510 ACGACGATCTACTACTCGCCT 60.203 52.381 0.00 0.00 38.42 5.52
524 547 1.073897 GTGGAGCTGCAAAGGAGGT 59.926 57.895 10.44 0.00 0.00 3.85
527 550 1.376466 GAGCTGCAAAGGAGGTGGA 59.624 57.895 1.02 0.00 0.00 4.02
563 586 3.209097 AACGGTTGCAGCAACGCT 61.209 55.556 28.00 14.92 44.36 5.07
593 616 2.240493 ACGAGAGTTGTTGTTCCTGG 57.760 50.000 0.00 0.00 46.40 4.45
623 650 1.683790 CTTCAATCCGACGGTCGCAC 61.684 60.000 24.26 0.00 38.82 5.34
635 662 2.604462 ACGGTCGCACGTAATTAAATCC 59.396 45.455 2.39 0.00 46.58 3.01
640 667 2.531103 CGCACGTAATTAAATCCGACGA 59.469 45.455 0.00 0.00 37.00 4.20
662 689 4.977741 CTGTTTTGCAGGCTGTTAATTG 57.022 40.909 17.16 0.00 41.42 2.32
666 693 0.407528 TGCAGGCTGTTAATTGGGGA 59.592 50.000 17.16 0.00 0.00 4.81
677 704 2.548464 AATTGGGGATTTAGCAGGCA 57.452 45.000 0.00 0.00 0.00 4.75
691 718 0.829333 CAGGCAGATGACACCTAGCT 59.171 55.000 0.00 0.00 30.84 3.32
692 719 2.034878 CAGGCAGATGACACCTAGCTA 58.965 52.381 0.00 0.00 30.84 3.32
698 725 1.735376 ATGACACCTAGCTACCGCCG 61.735 60.000 0.00 0.00 36.60 6.46
699 726 2.362120 ACACCTAGCTACCGCCGT 60.362 61.111 0.00 0.00 36.60 5.68
700 727 2.104331 CACCTAGCTACCGCCGTG 59.896 66.667 0.00 0.00 36.60 4.94
701 728 2.362120 ACCTAGCTACCGCCGTGT 60.362 61.111 0.00 0.00 36.60 4.49
702 729 1.077501 ACCTAGCTACCGCCGTGTA 60.078 57.895 0.00 0.00 36.60 2.90
703 730 1.358046 CCTAGCTACCGCCGTGTAC 59.642 63.158 0.00 0.00 36.60 2.90
704 731 1.378882 CCTAGCTACCGCCGTGTACA 61.379 60.000 0.00 0.00 36.60 2.90
705 732 0.248377 CTAGCTACCGCCGTGTACAC 60.248 60.000 16.32 16.32 36.60 2.90
706 733 0.959867 TAGCTACCGCCGTGTACACA 60.960 55.000 24.98 4.12 36.60 3.72
707 734 1.153706 GCTACCGCCGTGTACACAT 60.154 57.895 24.98 7.71 0.00 3.21
708 735 0.101040 GCTACCGCCGTGTACACATA 59.899 55.000 24.98 8.39 0.00 2.29
709 736 1.831343 CTACCGCCGTGTACACATAC 58.169 55.000 24.98 12.46 0.00 2.39
710 737 1.402968 CTACCGCCGTGTACACATACT 59.597 52.381 24.98 6.18 32.00 2.12
834 909 1.362224 CCCTTCTCTTTCCCCTCACA 58.638 55.000 0.00 0.00 0.00 3.58
837 912 2.106511 CCTTCTCTTTCCCCTCACAACA 59.893 50.000 0.00 0.00 0.00 3.33
838 913 3.406764 CTTCTCTTTCCCCTCACAACAG 58.593 50.000 0.00 0.00 0.00 3.16
1180 1276 2.603473 CGAGGGTGGTCTGGTCCA 60.603 66.667 0.00 0.00 34.85 4.02
1365 1461 0.841289 AGTACGAGGAGGAGGAGGAG 59.159 60.000 0.00 0.00 0.00 3.69
1366 1462 0.179012 GTACGAGGAGGAGGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
1367 1463 0.327287 TACGAGGAGGAGGAGGAGGA 60.327 60.000 0.00 0.00 0.00 3.71
1368 1464 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1572 1669 1.137675 CGGATGTTCATCTGAGGCTCA 59.862 52.381 17.68 17.68 0.00 4.26
1576 1673 4.040217 GGATGTTCATCTGAGGCTCAGTAT 59.960 45.833 36.22 26.38 44.58 2.12
1581 1678 6.098838 TGTTCATCTGAGGCTCAGTATTATGT 59.901 38.462 36.22 16.42 44.58 2.29
1586 1683 5.534278 TCTGAGGCTCAGTATTATGTCTCTG 59.466 44.000 36.22 13.25 44.58 3.35
1653 1750 7.724531 GCATTTTAGTTGCAGCAAGGATTGTT 61.725 38.462 8.49 0.00 43.23 2.83
1686 1783 3.859278 CCCCCACATGAAAAATGGC 57.141 52.632 0.00 0.00 31.66 4.40
1710 1807 2.365941 GGTATCTTGGTAGGAGCACCTC 59.634 54.545 5.75 0.00 46.43 3.85
1711 1808 2.559381 ATCTTGGTAGGAGCACCTCT 57.441 50.000 5.75 0.00 46.43 3.69
1727 1824 4.382040 GCACCTCTACATGCTTAGAGTGAA 60.382 45.833 15.54 0.00 42.54 3.18
1841 1938 8.827677 AGTACTGTTTGTTGTAAGAGCTTAAAG 58.172 33.333 0.00 0.00 0.00 1.85
1852 1949 9.436957 TTGTAAGAGCTTAAAGAGATAAACTGG 57.563 33.333 0.00 0.00 0.00 4.00
1876 1973 6.653740 GGTACCTAACTGCATTTTGTTACTCT 59.346 38.462 4.06 0.00 0.00 3.24
1887 1984 7.175467 TGCATTTTGTTACTCTCTGTCATTGAT 59.825 33.333 0.00 0.00 0.00 2.57
1905 2005 3.954200 TGATTGCTTGGCACATCTAGAA 58.046 40.909 0.00 0.00 38.71 2.10
1925 2025 9.847224 TCTAGAAATTGGTAGAGTTTGAAGTTT 57.153 29.630 0.00 0.00 0.00 2.66
1936 2036 5.891551 AGAGTTTGAAGTTTGCTCCCTTTTA 59.108 36.000 0.00 0.00 0.00 1.52
1982 2082 6.543430 TTCACTGCAAATTTTAGCCCATAT 57.457 33.333 0.00 0.00 0.00 1.78
1989 2089 6.154192 TGCAAATTTTAGCCCATATTGTCTGA 59.846 34.615 0.00 0.00 0.00 3.27
1997 2097 5.802465 AGCCCATATTGTCTGACTGATATG 58.198 41.667 23.20 23.20 34.04 1.78
2024 2124 8.966868 TCCATGTTATTAATTCAGGGACTTTTC 58.033 33.333 16.93 0.00 37.17 2.29
2135 2235 2.263077 CAGTGTCTGTATCACGCCTTC 58.737 52.381 0.00 0.00 40.28 3.46
2257 2395 6.957631 TGGTGGTAGAACTCATGATGTTAAT 58.042 36.000 0.00 0.00 0.00 1.40
2258 2396 7.047891 TGGTGGTAGAACTCATGATGTTAATC 58.952 38.462 0.00 0.00 0.00 1.75
2259 2397 7.047891 GGTGGTAGAACTCATGATGTTAATCA 58.952 38.462 0.00 0.00 46.71 2.57
2272 2410 7.806409 TGATGTTAATCATGATCGGTTTGAT 57.194 32.000 9.06 0.00 37.91 2.57
2273 2411 7.641760 TGATGTTAATCATGATCGGTTTGATG 58.358 34.615 9.06 0.00 37.91 3.07
2274 2412 7.498570 TGATGTTAATCATGATCGGTTTGATGA 59.501 33.333 9.06 0.00 37.91 2.92
2275 2413 7.250445 TGTTAATCATGATCGGTTTGATGAG 57.750 36.000 9.06 0.00 37.47 2.90
2276 2414 7.047271 TGTTAATCATGATCGGTTTGATGAGA 58.953 34.615 9.06 0.00 37.47 3.27
2277 2415 7.716560 TGTTAATCATGATCGGTTTGATGAGAT 59.283 33.333 9.06 0.00 37.47 2.75
2278 2416 6.798315 AATCATGATCGGTTTGATGAGATC 57.202 37.500 9.06 0.00 37.47 2.75
2294 2432 8.853077 TGATGAGATCAATACCCATTATGTTC 57.147 34.615 0.00 0.00 36.11 3.18
2295 2433 8.439172 TGATGAGATCAATACCCATTATGTTCA 58.561 33.333 0.00 0.00 36.11 3.18
2296 2434 9.288576 GATGAGATCAATACCCATTATGTTCAA 57.711 33.333 0.00 0.00 0.00 2.69
2297 2435 8.450578 TGAGATCAATACCCATTATGTTCAAC 57.549 34.615 0.00 0.00 0.00 3.18
2298 2436 8.052141 TGAGATCAATACCCATTATGTTCAACA 58.948 33.333 0.00 0.00 0.00 3.33
2299 2437 9.071276 GAGATCAATACCCATTATGTTCAACAT 57.929 33.333 8.41 8.41 42.35 2.71
2300 2438 8.853126 AGATCAATACCCATTATGTTCAACATG 58.147 33.333 13.65 0.00 39.53 3.21
2301 2439 8.765488 ATCAATACCCATTATGTTCAACATGA 57.235 30.769 13.65 5.25 39.53 3.07
2302 2440 7.995289 TCAATACCCATTATGTTCAACATGAC 58.005 34.615 13.65 0.00 39.53 3.06
2303 2441 7.613411 TCAATACCCATTATGTTCAACATGACA 59.387 33.333 13.65 0.00 39.53 3.58
2304 2442 5.902613 ACCCATTATGTTCAACATGACAG 57.097 39.130 13.65 1.80 39.53 3.51
2305 2443 5.324409 ACCCATTATGTTCAACATGACAGT 58.676 37.500 13.65 1.03 39.53 3.55
2306 2444 5.183713 ACCCATTATGTTCAACATGACAGTG 59.816 40.000 13.65 0.63 39.53 3.66
2307 2445 5.183713 CCCATTATGTTCAACATGACAGTGT 59.816 40.000 13.65 0.00 39.53 3.55
2308 2446 6.374053 CCCATTATGTTCAACATGACAGTGTA 59.626 38.462 13.65 0.00 39.53 2.90
2309 2447 7.067372 CCCATTATGTTCAACATGACAGTGTAT 59.933 37.037 13.65 0.00 39.53 2.29
2310 2448 7.911727 CCATTATGTTCAACATGACAGTGTATG 59.088 37.037 13.65 3.62 39.53 2.39
2311 2449 7.977789 TTATGTTCAACATGACAGTGTATGT 57.022 32.000 13.65 4.27 41.61 2.29
2312 2450 6.882610 ATGTTCAACATGACAGTGTATGTT 57.117 33.333 17.88 17.88 45.56 2.71
2313 2451 6.691754 TGTTCAACATGACAGTGTATGTTT 57.308 33.333 19.66 9.48 43.00 2.83
2314 2452 6.724263 TGTTCAACATGACAGTGTATGTTTC 58.276 36.000 19.66 15.38 43.00 2.78
2315 2453 6.317391 TGTTCAACATGACAGTGTATGTTTCA 59.683 34.615 19.66 16.77 43.00 2.69
2316 2454 7.013178 TGTTCAACATGACAGTGTATGTTTCAT 59.987 33.333 19.66 7.43 43.00 2.57
2317 2455 6.901265 TCAACATGACAGTGTATGTTTCATG 58.099 36.000 19.66 17.63 43.00 3.07
2318 2456 5.300969 ACATGACAGTGTATGTTTCATGC 57.699 39.130 16.26 0.00 43.20 4.06
2319 2457 4.156556 ACATGACAGTGTATGTTTCATGCC 59.843 41.667 16.26 0.00 43.20 4.40
2320 2458 4.019792 TGACAGTGTATGTTTCATGCCT 57.980 40.909 0.00 0.00 44.17 4.75
2321 2459 4.397420 TGACAGTGTATGTTTCATGCCTT 58.603 39.130 0.00 0.00 44.17 4.35
2322 2460 4.826733 TGACAGTGTATGTTTCATGCCTTT 59.173 37.500 0.00 0.00 44.17 3.11
2323 2461 5.048782 TGACAGTGTATGTTTCATGCCTTTC 60.049 40.000 0.00 0.00 44.17 2.62
2324 2462 4.218417 ACAGTGTATGTTTCATGCCTTTCC 59.782 41.667 0.00 0.00 39.96 3.13
2325 2463 3.763897 AGTGTATGTTTCATGCCTTTCCC 59.236 43.478 0.00 0.00 0.00 3.97
2326 2464 3.096092 TGTATGTTTCATGCCTTTCCCC 58.904 45.455 0.00 0.00 0.00 4.81
2327 2465 1.571955 ATGTTTCATGCCTTTCCCCC 58.428 50.000 0.00 0.00 0.00 5.40
2328 2466 0.486879 TGTTTCATGCCTTTCCCCCT 59.513 50.000 0.00 0.00 0.00 4.79
2329 2467 1.713647 TGTTTCATGCCTTTCCCCCTA 59.286 47.619 0.00 0.00 0.00 3.53
2330 2468 2.314549 TGTTTCATGCCTTTCCCCCTAT 59.685 45.455 0.00 0.00 0.00 2.57
2331 2469 2.959030 GTTTCATGCCTTTCCCCCTATC 59.041 50.000 0.00 0.00 0.00 2.08
2332 2470 2.212752 TCATGCCTTTCCCCCTATCT 57.787 50.000 0.00 0.00 0.00 1.98
2333 2471 1.776667 TCATGCCTTTCCCCCTATCTG 59.223 52.381 0.00 0.00 0.00 2.90
2334 2472 1.496429 CATGCCTTTCCCCCTATCTGT 59.504 52.381 0.00 0.00 0.00 3.41
2335 2473 1.681229 TGCCTTTCCCCCTATCTGTT 58.319 50.000 0.00 0.00 0.00 3.16
2336 2474 2.853430 TGCCTTTCCCCCTATCTGTTA 58.147 47.619 0.00 0.00 0.00 2.41
2337 2475 3.403322 TGCCTTTCCCCCTATCTGTTAT 58.597 45.455 0.00 0.00 0.00 1.89
2338 2476 3.138283 TGCCTTTCCCCCTATCTGTTATG 59.862 47.826 0.00 0.00 0.00 1.90
2339 2477 3.138468 GCCTTTCCCCCTATCTGTTATGT 59.862 47.826 0.00 0.00 0.00 2.29
2340 2478 4.349930 GCCTTTCCCCCTATCTGTTATGTA 59.650 45.833 0.00 0.00 0.00 2.29
2341 2479 5.745181 GCCTTTCCCCCTATCTGTTATGTAC 60.745 48.000 0.00 0.00 0.00 2.90
2342 2480 5.607171 CCTTTCCCCCTATCTGTTATGTACT 59.393 44.000 0.00 0.00 0.00 2.73
2343 2481 6.785963 CCTTTCCCCCTATCTGTTATGTACTA 59.214 42.308 0.00 0.00 0.00 1.82
2344 2482 7.038941 CCTTTCCCCCTATCTGTTATGTACTAG 60.039 44.444 0.00 0.00 0.00 2.57
2345 2483 6.541264 TCCCCCTATCTGTTATGTACTAGT 57.459 41.667 0.00 0.00 0.00 2.57
2346 2484 7.652757 TCCCCCTATCTGTTATGTACTAGTA 57.347 40.000 0.00 0.00 0.00 1.82
2347 2485 8.240881 TCCCCCTATCTGTTATGTACTAGTAT 57.759 38.462 5.75 0.00 0.00 2.12
2348 2486 8.685311 TCCCCCTATCTGTTATGTACTAGTATT 58.315 37.037 5.75 0.00 0.00 1.89
2349 2487 8.968969 CCCCCTATCTGTTATGTACTAGTATTC 58.031 40.741 5.75 0.00 0.00 1.75
2350 2488 9.756571 CCCCTATCTGTTATGTACTAGTATTCT 57.243 37.037 5.75 0.00 0.00 2.40
2356 2494 9.836864 TCTGTTATGTACTAGTATTCTTACCGA 57.163 33.333 5.75 1.57 0.00 4.69
2357 2495 9.875675 CTGTTATGTACTAGTATTCTTACCGAC 57.124 37.037 5.75 0.00 0.00 4.79
2358 2496 9.618890 TGTTATGTACTAGTATTCTTACCGACT 57.381 33.333 5.75 0.00 0.00 4.18
2361 2499 7.239166 TGTACTAGTATTCTTACCGACTTCG 57.761 40.000 5.75 0.00 39.44 3.79
2362 2500 6.818644 TGTACTAGTATTCTTACCGACTTCGT 59.181 38.462 5.75 0.00 37.74 3.85
2363 2501 6.749923 ACTAGTATTCTTACCGACTTCGTT 57.250 37.500 0.00 0.00 37.74 3.85
2364 2502 6.549952 ACTAGTATTCTTACCGACTTCGTTG 58.450 40.000 0.00 0.00 37.74 4.10
2365 2503 5.633830 AGTATTCTTACCGACTTCGTTGA 57.366 39.130 0.00 0.00 37.74 3.18
2366 2504 6.205101 AGTATTCTTACCGACTTCGTTGAT 57.795 37.500 0.00 0.00 37.74 2.57
2367 2505 6.628185 AGTATTCTTACCGACTTCGTTGATT 58.372 36.000 0.00 0.00 37.74 2.57
2368 2506 7.095270 AGTATTCTTACCGACTTCGTTGATTT 58.905 34.615 0.00 0.00 37.74 2.17
2369 2507 5.585500 TTCTTACCGACTTCGTTGATTTG 57.415 39.130 0.00 0.00 37.74 2.32
2370 2508 3.430895 TCTTACCGACTTCGTTGATTTGC 59.569 43.478 0.00 0.00 37.74 3.68
2371 2509 1.878953 ACCGACTTCGTTGATTTGCT 58.121 45.000 0.00 0.00 37.74 3.91
2372 2510 2.218603 ACCGACTTCGTTGATTTGCTT 58.781 42.857 0.00 0.00 37.74 3.91
2373 2511 2.616842 ACCGACTTCGTTGATTTGCTTT 59.383 40.909 0.00 0.00 37.74 3.51
2374 2512 2.973224 CCGACTTCGTTGATTTGCTTTG 59.027 45.455 0.00 0.00 37.74 2.77
2375 2513 2.401720 CGACTTCGTTGATTTGCTTTGC 59.598 45.455 0.00 0.00 34.11 3.68
2376 2514 2.726241 GACTTCGTTGATTTGCTTTGCC 59.274 45.455 0.00 0.00 0.00 4.52
2377 2515 2.362077 ACTTCGTTGATTTGCTTTGCCT 59.638 40.909 0.00 0.00 0.00 4.75
2378 2516 3.181476 ACTTCGTTGATTTGCTTTGCCTT 60.181 39.130 0.00 0.00 0.00 4.35
2379 2517 2.741612 TCGTTGATTTGCTTTGCCTTG 58.258 42.857 0.00 0.00 0.00 3.61
2380 2518 2.100584 TCGTTGATTTGCTTTGCCTTGT 59.899 40.909 0.00 0.00 0.00 3.16
2381 2519 2.865551 CGTTGATTTGCTTTGCCTTGTT 59.134 40.909 0.00 0.00 0.00 2.83
2382 2520 3.309410 CGTTGATTTGCTTTGCCTTGTTT 59.691 39.130 0.00 0.00 0.00 2.83
2383 2521 4.505922 CGTTGATTTGCTTTGCCTTGTTTA 59.494 37.500 0.00 0.00 0.00 2.01
2384 2522 5.332506 CGTTGATTTGCTTTGCCTTGTTTAG 60.333 40.000 0.00 0.00 0.00 1.85
2385 2523 5.528043 TGATTTGCTTTGCCTTGTTTAGA 57.472 34.783 0.00 0.00 0.00 2.10
2386 2524 5.288804 TGATTTGCTTTGCCTTGTTTAGAC 58.711 37.500 0.00 0.00 0.00 2.59
2387 2525 4.727507 TTTGCTTTGCCTTGTTTAGACA 57.272 36.364 0.00 0.00 0.00 3.41
2388 2526 4.727507 TTGCTTTGCCTTGTTTAGACAA 57.272 36.364 0.00 0.00 43.23 3.18
2397 2535 3.586470 TTGTTTAGACAAGGAGGCCAA 57.414 42.857 5.01 0.00 40.71 4.52
2398 2536 3.140325 TGTTTAGACAAGGAGGCCAAG 57.860 47.619 5.01 0.00 31.49 3.61
2399 2537 2.708861 TGTTTAGACAAGGAGGCCAAGA 59.291 45.455 5.01 0.00 31.49 3.02
2400 2538 3.137544 TGTTTAGACAAGGAGGCCAAGAA 59.862 43.478 5.01 0.00 31.49 2.52
2401 2539 3.703001 TTAGACAAGGAGGCCAAGAAG 57.297 47.619 5.01 0.00 0.00 2.85
2402 2540 1.439543 AGACAAGGAGGCCAAGAAGT 58.560 50.000 5.01 0.00 0.00 3.01
2403 2541 1.349357 AGACAAGGAGGCCAAGAAGTC 59.651 52.381 5.01 7.56 0.00 3.01
2404 2542 0.402121 ACAAGGAGGCCAAGAAGTCC 59.598 55.000 5.01 0.89 0.00 3.85
2405 2543 0.695347 CAAGGAGGCCAAGAAGTCCT 59.305 55.000 5.01 3.90 41.42 3.85
2406 2544 1.450360 AAGGAGGCCAAGAAGTCCTT 58.550 50.000 14.42 14.42 43.31 3.36
2407 2545 1.450360 AGGAGGCCAAGAAGTCCTTT 58.550 50.000 5.01 0.00 35.84 3.11
2408 2546 1.783365 AGGAGGCCAAGAAGTCCTTTT 59.217 47.619 5.01 0.00 35.84 2.27
2409 2547 2.986728 AGGAGGCCAAGAAGTCCTTTTA 59.013 45.455 5.01 0.00 35.84 1.52
2410 2548 3.009584 AGGAGGCCAAGAAGTCCTTTTAG 59.990 47.826 5.01 0.00 35.84 1.85
2411 2549 3.009143 GGAGGCCAAGAAGTCCTTTTAGA 59.991 47.826 5.01 0.00 31.42 2.10
2412 2550 4.257731 GAGGCCAAGAAGTCCTTTTAGAG 58.742 47.826 5.01 0.00 31.42 2.43
2413 2551 2.750166 GGCCAAGAAGTCCTTTTAGAGC 59.250 50.000 0.00 0.00 31.42 4.09
2414 2552 3.560239 GGCCAAGAAGTCCTTTTAGAGCT 60.560 47.826 0.00 0.00 31.42 4.09
2415 2553 3.687212 GCCAAGAAGTCCTTTTAGAGCTC 59.313 47.826 5.27 5.27 31.42 4.09
2416 2554 3.929610 CCAAGAAGTCCTTTTAGAGCTCG 59.070 47.826 8.37 0.00 31.42 5.03
2417 2555 3.878160 AGAAGTCCTTTTAGAGCTCGG 57.122 47.619 8.37 2.90 0.00 4.63
2418 2556 2.498078 AGAAGTCCTTTTAGAGCTCGGG 59.502 50.000 8.37 7.17 0.00 5.14
2419 2557 0.537653 AGTCCTTTTAGAGCTCGGGC 59.462 55.000 8.37 0.00 39.06 6.13
2429 2567 3.075005 GCTCGGGCTGGTGGTAGA 61.075 66.667 0.00 0.00 35.22 2.59
2430 2568 2.656069 GCTCGGGCTGGTGGTAGAA 61.656 63.158 0.00 0.00 35.22 2.10
2431 2569 1.218316 CTCGGGCTGGTGGTAGAAC 59.782 63.158 0.00 0.00 0.00 3.01
2432 2570 1.229082 TCGGGCTGGTGGTAGAACT 60.229 57.895 0.00 0.00 0.00 3.01
2433 2571 1.218316 CGGGCTGGTGGTAGAACTC 59.782 63.158 0.00 0.00 0.00 3.01
2434 2572 1.541310 CGGGCTGGTGGTAGAACTCA 61.541 60.000 0.00 0.00 0.00 3.41
2435 2573 0.912486 GGGCTGGTGGTAGAACTCAT 59.088 55.000 0.00 0.00 0.00 2.90
2436 2574 1.407437 GGGCTGGTGGTAGAACTCATG 60.407 57.143 0.00 0.00 0.00 3.07
2437 2575 1.555075 GGCTGGTGGTAGAACTCATGA 59.445 52.381 0.00 0.00 0.00 3.07
2438 2576 2.171448 GGCTGGTGGTAGAACTCATGAT 59.829 50.000 0.00 0.00 0.00 2.45
2439 2577 3.201290 GCTGGTGGTAGAACTCATGATG 58.799 50.000 0.00 0.00 0.00 3.07
2440 2578 3.369892 GCTGGTGGTAGAACTCATGATGT 60.370 47.826 0.00 0.00 0.00 3.06
2441 2579 4.836825 CTGGTGGTAGAACTCATGATGTT 58.163 43.478 9.42 9.42 0.00 2.71
2442 2580 5.626809 GCTGGTGGTAGAACTCATGATGTTA 60.627 44.000 0.00 0.00 0.00 2.41
2443 2581 6.367374 TGGTGGTAGAACTCATGATGTTAA 57.633 37.500 0.00 0.00 0.00 2.01
2531 2669 7.458170 CCTTTCCCCCTATCTATTGTGTACTAT 59.542 40.741 0.00 0.00 0.00 2.12
2627 2765 1.067142 TGGTGGTAGAACTCATGACGC 60.067 52.381 0.00 0.00 0.00 5.19
2637 2775 2.893637 ACTCATGACGCTAACCATGAC 58.106 47.619 0.00 0.00 42.76 3.06
2739 2878 7.431249 AGTGTTCTTACTGACTTCGTTGATTA 58.569 34.615 0.00 0.00 0.00 1.75
2750 2889 8.317891 TGACTTCGTTGATTATCTTTGCTTTA 57.682 30.769 0.00 0.00 0.00 1.85
2810 2949 2.881074 CTGGTGGTAGAACTCATGACG 58.119 52.381 0.00 0.00 0.00 4.35
2848 2987 2.091541 GAAGGAACCAAATCCGCATCA 58.908 47.619 0.00 0.00 44.60 3.07
2889 3028 5.459505 AGCAGACTACAAGTATGGGAGTAT 58.540 41.667 4.08 0.00 28.43 2.12
3047 3186 6.985188 TCTGTTATGTGAATGCTAAAGGTC 57.015 37.500 0.00 0.00 0.00 3.85
3147 3286 5.437289 TCTTCAGTGCAAAACAATAGGTG 57.563 39.130 0.00 0.00 0.00 4.00
3165 3304 3.331889 AGGTGAAGTGTGAATCCATTCCT 59.668 43.478 0.00 0.00 35.97 3.36
3277 3416 2.028112 GCTGTTCTGATACAGGTGTGGA 60.028 50.000 16.30 0.00 44.50 4.02
3324 3463 7.333528 AGTTTGCAGAATGAACAAGAGTTTA 57.666 32.000 1.37 0.00 39.69 2.01
3329 3468 5.050363 GCAGAATGAACAAGAGTTTACGTCA 60.050 40.000 0.00 0.00 39.69 4.35
3401 3540 7.726033 TTTAAGTAAGCTCTTCTCATCCTCT 57.274 36.000 0.00 0.00 0.00 3.69
3441 3580 4.873746 TCTCTGAAACCTCAATCTCGTT 57.126 40.909 0.00 0.00 0.00 3.85
3470 3609 1.538047 GAGTGAAGGCATTTGCTCCA 58.462 50.000 2.12 0.00 41.70 3.86
3539 3678 2.561478 TGCCTAACCTTGGTTCTCAC 57.439 50.000 8.46 0.00 0.00 3.51
3633 3772 5.358725 GTCCCCACAAAGAACAAACTTTCTA 59.641 40.000 0.00 0.00 37.91 2.10
3761 3900 4.038642 GGGTCAAACAATTCTTTAGCACCA 59.961 41.667 0.00 0.00 0.00 4.17
3810 3949 0.607620 AGAAGCAGTGAGTGGCTCTC 59.392 55.000 9.57 9.57 40.01 3.20
4001 4140 1.270839 GCAACCAGTAGAGCAGTCCAA 60.271 52.381 0.00 0.00 0.00 3.53
4125 4264 4.981674 GGCAACGAGATTTGATTTCAACAA 59.018 37.500 0.00 0.00 35.28 2.83
4212 4351 0.960364 AAGTGCGTATGGGCCAAGTG 60.960 55.000 11.89 3.78 0.00 3.16
4218 4357 1.610624 CGTATGGGCCAAGTGTCAACT 60.611 52.381 11.89 0.00 38.71 3.16
4227 4366 3.619979 GCCAAGTGTCAACTGTAGCCTAT 60.620 47.826 0.00 0.00 36.51 2.57
4242 4381 5.533154 TGTAGCCTATCTGCTAGAGAACTTC 59.467 44.000 0.00 0.00 44.12 3.01
4327 4466 1.421646 AGTTGTAGCCTTGCTGGTTCT 59.578 47.619 0.00 0.00 40.10 3.01
4332 4471 1.068121 AGCCTTGCTGGTTCTTACCT 58.932 50.000 0.00 0.00 45.27 3.08
4334 4473 2.642807 AGCCTTGCTGGTTCTTACCTAA 59.357 45.455 0.00 0.00 45.27 2.69
4347 4488 6.771267 GGTTCTTACCTAATCTTGGGGTATTG 59.229 42.308 0.00 0.00 41.53 1.90
4396 4537 3.706086 TCTCAGTCTGCATTGCCATACTA 59.294 43.478 6.12 0.00 0.00 1.82
4397 4538 4.346127 TCTCAGTCTGCATTGCCATACTAT 59.654 41.667 6.12 0.00 0.00 2.12
4398 4539 5.539955 TCTCAGTCTGCATTGCCATACTATA 59.460 40.000 6.12 0.00 0.00 1.31
4405 4588 6.440328 TCTGCATTGCCATACTATATACTCCA 59.560 38.462 6.12 0.00 0.00 3.86
4484 4715 5.431765 CTGCACATTCTCTGTTACCCTAAT 58.568 41.667 0.00 0.00 35.29 1.73
4559 4790 1.202855 ACCTGATATCCCATGCACTGC 60.203 52.381 0.00 0.00 0.00 4.40
4615 4846 6.115446 CCCAGTGACAATTCTGAGCTTAATA 58.885 40.000 0.00 0.00 34.02 0.98
4724 4955 2.517959 AGCTGCAAACTCCATTTAGCA 58.482 42.857 1.02 0.00 35.24 3.49
4745 4976 5.864474 AGCAAACTTCTTCATGAGTACTACG 59.136 40.000 0.00 0.00 0.00 3.51
4759 4990 8.703336 CATGAGTACTACGGATATTTGTGATTG 58.297 37.037 0.00 0.00 0.00 2.67
4785 5016 4.730487 GCACTCTGCAGGGTTCAT 57.270 55.556 19.01 0.00 44.26 2.57
4789 5020 2.819608 GCACTCTGCAGGGTTCATAAAA 59.180 45.455 19.01 0.00 44.26 1.52
4790 5021 3.255642 GCACTCTGCAGGGTTCATAAAAA 59.744 43.478 19.01 0.00 44.26 1.94
4835 5066 4.429854 TTATTTGGGCCAAGCTGTTTTT 57.570 36.364 19.90 1.34 0.00 1.94
4874 5105 1.619363 ATTACCCCCAGCCTCTGCA 60.619 57.895 0.00 0.00 41.13 4.41
4897 5128 4.227300 ACCAGCTAAGGATGAATACAACCA 59.773 41.667 0.00 0.00 40.71 3.67
5019 5271 5.831525 TCAACTCTCAACAGTCCTACACTTA 59.168 40.000 0.00 0.00 30.26 2.24
5040 5292 2.680251 TCCATGCCATGCCATAAATGT 58.320 42.857 0.00 0.00 0.00 2.71
5041 5293 3.039743 TCCATGCCATGCCATAAATGTT 58.960 40.909 0.00 0.00 0.00 2.71
5112 5367 0.898320 GTGCTGAAGGCCTCTCTGTA 59.102 55.000 5.23 7.09 40.92 2.74
5115 5370 2.573462 TGCTGAAGGCCTCTCTGTATTT 59.427 45.455 5.23 0.00 40.92 1.40
5152 5407 4.360563 GGATACTGTACGTTCCTGTCATG 58.639 47.826 0.00 0.00 0.00 3.07
5162 5417 4.180817 CGTTCCTGTCATGTGCTATTACA 58.819 43.478 0.00 0.00 34.63 2.41
5163 5418 4.268644 CGTTCCTGTCATGTGCTATTACAG 59.731 45.833 8.15 8.15 37.81 2.74
5164 5419 5.419542 GTTCCTGTCATGTGCTATTACAGA 58.580 41.667 13.79 2.80 39.93 3.41
5165 5420 5.675684 TCCTGTCATGTGCTATTACAGAA 57.324 39.130 13.79 0.00 39.93 3.02
5166 5421 6.239217 TCCTGTCATGTGCTATTACAGAAT 57.761 37.500 13.79 0.00 39.93 2.40
5170 5425 8.093307 CCTGTCATGTGCTATTACAGAATAGAT 58.907 37.037 13.79 0.00 45.16 1.98
5253 5508 7.448777 TGATTACATGGTAGTTACTGGCAAAAA 59.551 33.333 0.00 0.00 0.00 1.94
5317 5572 5.705609 AGATTGGTTGAACGTGCTTAATT 57.294 34.783 0.00 0.00 0.00 1.40
5489 5758 1.229177 GGGGTTCTTGGGGCAACAT 60.229 57.895 0.00 0.00 39.74 2.71
5526 5795 1.064017 TGGCAGTCATTATCCCCAACC 60.064 52.381 0.00 0.00 0.00 3.77
5590 5859 5.890110 ATGTTACACGCTTTCAGATATCG 57.110 39.130 0.00 0.00 0.00 2.92
5637 5906 7.485810 TGTATATACTTCGCAACAAAGCTAGA 58.514 34.615 13.89 0.00 0.00 2.43
5734 6003 8.547967 AATCACCTATAACAGTTACAGTTGTG 57.452 34.615 3.38 3.52 0.00 3.33
5797 6066 5.880332 GTGGTCTGATTGGTGCTAAAGATTA 59.120 40.000 0.00 0.00 0.00 1.75
5811 6080 8.286097 GTGCTAAAGATTATGGCTATCTTCAAC 58.714 37.037 9.41 4.73 40.51 3.18
5878 6150 6.665680 TCTCAGAGCTAGTTTTTCCTATGTCT 59.334 38.462 0.00 0.00 0.00 3.41
5879 6151 7.179338 TCTCAGAGCTAGTTTTTCCTATGTCTT 59.821 37.037 0.00 0.00 0.00 3.01
5880 6152 7.324178 TCAGAGCTAGTTTTTCCTATGTCTTC 58.676 38.462 0.00 0.00 0.00 2.87
5891 6163 9.793259 TTTTTCCTATGTCTTCTTACAATCTGT 57.207 29.630 0.00 0.00 32.02 3.41
5985 6257 3.617735 TACCGTGTTCCCGCTGCA 61.618 61.111 0.00 0.00 0.00 4.41
6127 6405 6.544931 CAGTATATGGCTTCATGGATATTGGG 59.455 42.308 0.00 0.00 32.59 4.12
6160 6438 2.223947 GGAGGTTTTTGCGTTTCACCAT 60.224 45.455 0.00 0.00 0.00 3.55
6190 6468 8.169977 TCCATTGATTCTTTTATAGGCATCAC 57.830 34.615 0.00 0.00 0.00 3.06
6204 6482 1.194547 GCATCACTGTACAACACACGG 59.805 52.381 0.00 0.00 32.33 4.94
6247 6525 5.733226 TGTATCTTGGTGTATGCATTTCG 57.267 39.130 3.54 0.00 0.00 3.46
6255 6533 3.483574 GGTGTATGCATTTCGTGTCTTCG 60.484 47.826 3.54 0.00 0.00 3.79
6298 6576 5.050490 CGAGGTTTTGTATCCATGTAGAGG 58.950 45.833 0.00 0.00 0.00 3.69
6439 6734 6.676990 AATTTCTTCTTTTTCCCTGCAGAT 57.323 33.333 17.39 0.00 0.00 2.90
6530 6825 8.969260 TCAGTCTCATTGCATATTCTGTATTT 57.031 30.769 0.00 0.00 0.00 1.40
6701 6998 9.359653 CAGATCATGGGAATTAAATAAGGTCTT 57.640 33.333 0.00 0.00 0.00 3.01
6819 7119 3.631250 ACAACCAAAGTGAATCCACAGT 58.369 40.909 0.00 0.00 45.54 3.55
6821 7121 5.385198 ACAACCAAAGTGAATCCACAGTAT 58.615 37.500 0.00 0.00 45.54 2.12
6835 7135 4.284490 TCCACAGTATCAGCTTTCAGTCTT 59.716 41.667 0.00 0.00 0.00 3.01
6839 7139 7.335422 CCACAGTATCAGCTTTCAGTCTTTATT 59.665 37.037 0.00 0.00 0.00 1.40
6871 7175 3.970610 GCATTCTGCATTGTATTGCTACG 59.029 43.478 0.00 0.00 44.26 3.51
7053 7367 5.648178 TGACAGCACTTAATTGCATTGAT 57.352 34.783 18.69 0.72 45.62 2.57
7115 7688 4.516321 TGGATGATGTGTTCACTGTTTCTG 59.484 41.667 4.59 0.00 37.11 3.02
7223 7796 1.700739 TGGAACCACCAACCTATTCGT 59.299 47.619 0.00 0.00 46.75 3.85
7272 7845 6.983307 GCTAGCATCTCATTCTTCTTGAACTA 59.017 38.462 10.63 0.00 37.52 2.24
7301 7874 4.702131 GGTTCAGCAATCACTAGGAAACAT 59.298 41.667 0.00 0.00 0.00 2.71
7318 7891 8.682936 AGGAAACATAGAGCAACCTTTATATG 57.317 34.615 0.00 0.00 0.00 1.78
7378 7951 4.077822 TCAATCATGTGTGTGGCATGTAA 58.922 39.130 0.00 0.00 42.94 2.41
7394 7967 8.182227 GTGGCATGTAAAAGTCTAAATTAGGTC 58.818 37.037 0.00 0.00 0.00 3.85
7424 7997 6.636562 TTCGTGGGTGTAAAATGTGTAATT 57.363 33.333 0.00 0.00 0.00 1.40
7665 8397 2.264794 GGCAGTTCCGATCCGTGT 59.735 61.111 0.00 0.00 0.00 4.49
7687 8419 2.015456 TCTTGCTCCTGGTCAAGAGA 57.985 50.000 21.32 8.58 42.43 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.024049 GCATGAAGTGTTTAGCATGAAGTAC 58.976 40.000 0.00 0.00 40.29 2.73
32 33 5.510671 ACTGTGTTTGTGATTTCGTGAATC 58.489 37.500 7.15 7.15 43.67 2.52
38 39 4.034626 TGGTGTACTGTGTTTGTGATTTCG 59.965 41.667 0.00 0.00 0.00 3.46
79 80 0.739112 CCAGCTCCTTCTCGTGAAGC 60.739 60.000 19.36 10.90 46.13 3.86
115 136 4.517285 TGCTCAAAACCCTAGCTATTCAG 58.483 43.478 0.00 0.00 37.16 3.02
116 137 4.568072 TGCTCAAAACCCTAGCTATTCA 57.432 40.909 0.00 0.00 37.16 2.57
117 138 4.944317 AGTTGCTCAAAACCCTAGCTATTC 59.056 41.667 0.00 0.00 37.16 1.75
118 139 4.923415 AGTTGCTCAAAACCCTAGCTATT 58.077 39.130 0.00 0.00 37.16 1.73
119 140 4.576330 AGTTGCTCAAAACCCTAGCTAT 57.424 40.909 0.00 0.00 37.16 2.97
120 141 4.367039 AAGTTGCTCAAAACCCTAGCTA 57.633 40.909 0.00 0.00 37.16 3.32
121 142 2.959465 AGTTGCTCAAAACCCTAGCT 57.041 45.000 0.00 0.00 37.16 3.32
122 143 3.190744 GGTAAGTTGCTCAAAACCCTAGC 59.809 47.826 0.00 0.00 36.77 3.42
123 144 3.756963 GGGTAAGTTGCTCAAAACCCTAG 59.243 47.826 16.02 0.00 42.74 3.02
124 145 3.138653 TGGGTAAGTTGCTCAAAACCCTA 59.861 43.478 20.46 10.79 45.64 3.53
125 146 2.091555 TGGGTAAGTTGCTCAAAACCCT 60.092 45.455 20.46 0.00 45.64 4.34
126 147 2.312390 TGGGTAAGTTGCTCAAAACCC 58.688 47.619 16.27 16.27 45.64 4.11
127 148 3.491964 GGTTGGGTAAGTTGCTCAAAACC 60.492 47.826 7.92 3.44 0.00 3.27
128 149 3.131400 TGGTTGGGTAAGTTGCTCAAAAC 59.869 43.478 7.92 5.35 0.00 2.43
148 169 0.818445 CCAGCTAGCTCCTTGCATGG 60.818 60.000 16.15 12.41 45.94 3.66
154 175 0.252927 AGGTTCCCAGCTAGCTCCTT 60.253 55.000 16.15 0.22 0.00 3.36
164 185 3.703001 TTCTCTGCTAAAGGTTCCCAG 57.297 47.619 0.00 0.00 0.00 4.45
197 218 2.032681 GTTGCAAGGGAGCTCCGT 59.967 61.111 26.36 24.33 41.52 4.69
221 242 1.890876 CCGGTGAGTCAATTCCACAA 58.109 50.000 0.00 0.00 32.79 3.33
224 245 1.375396 CGCCGGTGAGTCAATTCCA 60.375 57.895 10.20 0.00 0.00 3.53
230 251 1.511305 GATTCTCGCCGGTGAGTCA 59.489 57.895 37.02 27.21 37.28 3.41
253 274 3.487202 GCACGCAAGCCGAATCGA 61.487 61.111 3.36 0.00 45.62 3.59
272 293 1.599047 CTTCGGTGCTCCATCCAGT 59.401 57.895 5.52 0.00 0.00 4.00
288 309 1.961277 CCGTCGTGGCTTGAAGCTT 60.961 57.895 17.59 0.00 41.99 3.74
301 322 1.138036 TCTATGTTGTCGGCCGTCG 59.862 57.895 27.15 5.67 40.90 5.12
303 324 1.217244 GGTCTATGTTGTCGGCCGT 59.783 57.895 27.15 7.03 0.00 5.68
330 351 2.203252 CACCATGGCATCTCCCCG 60.203 66.667 13.04 0.00 0.00 5.73
388 411 2.417516 CATCGCCTCTACCACCGG 59.582 66.667 0.00 0.00 0.00 5.28
389 412 2.279517 GCATCGCCTCTACCACCG 60.280 66.667 0.00 0.00 0.00 4.94
390 413 1.227380 CAGCATCGCCTCTACCACC 60.227 63.158 0.00 0.00 0.00 4.61
391 414 1.884926 GCAGCATCGCCTCTACCAC 60.885 63.158 0.00 0.00 0.00 4.16
415 438 3.065306 CCTCTACCACCGCCAACA 58.935 61.111 0.00 0.00 0.00 3.33
445 468 4.557605 CAATGCACCATCGCCGCC 62.558 66.667 0.00 0.00 0.00 6.13
446 469 4.557605 CCAATGCACCATCGCCGC 62.558 66.667 0.00 0.00 0.00 6.53
447 470 4.557605 GCCAATGCACCATCGCCG 62.558 66.667 0.00 0.00 37.47 6.46
448 471 4.557605 CGCCAATGCACCATCGCC 62.558 66.667 0.00 0.00 37.32 5.54
449 472 3.507924 TCGCCAATGCACCATCGC 61.508 61.111 0.00 0.00 37.32 4.58
450 473 2.404789 GTCGCCAATGCACCATCG 59.595 61.111 0.00 0.00 37.32 3.84
470 493 1.335142 GCCAAGGCGAGTAGTAGATCG 60.335 57.143 0.00 1.22 41.79 3.69
477 500 2.105128 CGAGGCCAAGGCGAGTAG 59.895 66.667 5.01 0.00 43.06 2.57
504 527 0.615331 CCTCCTTTGCAGCTCCACTA 59.385 55.000 0.00 0.00 0.00 2.74
507 530 1.073722 CACCTCCTTTGCAGCTCCA 59.926 57.895 0.00 0.00 0.00 3.86
524 547 3.091545 GGATGTGGAAGCAAAATCTCCA 58.908 45.455 0.00 0.00 0.00 3.86
527 550 3.057315 CGTTGGATGTGGAAGCAAAATCT 60.057 43.478 0.00 0.00 0.00 2.40
563 586 2.821546 CAACTCTCGTTGTCTTCCACA 58.178 47.619 0.00 0.00 44.27 4.17
593 616 0.517316 GGATTGAAGCCACGTGTCAC 59.483 55.000 15.65 3.47 0.00 3.67
623 650 5.691508 AACAGTCGTCGGATTTAATTACG 57.308 39.130 0.00 0.00 34.99 3.18
635 662 1.082756 GCCTGCAAAACAGTCGTCG 60.083 57.895 0.00 0.00 45.68 5.12
640 667 4.370917 CAATTAACAGCCTGCAAAACAGT 58.629 39.130 0.00 0.00 45.68 3.55
660 687 0.998928 TCTGCCTGCTAAATCCCCAA 59.001 50.000 0.00 0.00 0.00 4.12
662 689 1.143684 TCATCTGCCTGCTAAATCCCC 59.856 52.381 0.00 0.00 0.00 4.81
666 693 2.240667 AGGTGTCATCTGCCTGCTAAAT 59.759 45.455 0.00 0.00 0.00 1.40
677 704 1.033574 GCGGTAGCTAGGTGTCATCT 58.966 55.000 4.27 0.00 41.01 2.90
691 718 1.462616 AGTATGTGTACACGGCGGTA 58.537 50.000 20.61 8.03 33.09 4.02
692 719 1.462616 TAGTATGTGTACACGGCGGT 58.537 50.000 20.61 9.14 33.09 5.68
702 729 9.383519 CCACAGTAATGAGATTTTAGTATGTGT 57.616 33.333 0.00 0.00 0.00 3.72
703 730 8.338259 GCCACAGTAATGAGATTTTAGTATGTG 58.662 37.037 0.00 0.00 0.00 3.21
704 731 7.499232 GGCCACAGTAATGAGATTTTAGTATGT 59.501 37.037 0.00 0.00 0.00 2.29
705 732 7.041098 GGGCCACAGTAATGAGATTTTAGTATG 60.041 40.741 4.39 0.00 0.00 2.39
706 733 6.998673 GGGCCACAGTAATGAGATTTTAGTAT 59.001 38.462 4.39 0.00 0.00 2.12
707 734 6.069905 TGGGCCACAGTAATGAGATTTTAGTA 60.070 38.462 0.00 0.00 0.00 1.82
708 735 5.193679 GGGCCACAGTAATGAGATTTTAGT 58.806 41.667 4.39 0.00 0.00 2.24
709 736 5.066505 GTGGGCCACAGTAATGAGATTTTAG 59.933 44.000 31.26 0.00 34.08 1.85
710 737 4.947388 GTGGGCCACAGTAATGAGATTTTA 59.053 41.667 31.26 0.00 34.08 1.52
834 909 3.698539 TGATCGATCAGCTTCTCTCTGTT 59.301 43.478 23.99 0.00 33.48 3.16
869 944 0.960364 TTGGCGGACTGGCTTGATTC 60.960 55.000 9.53 0.00 45.14 2.52
1043 1118 4.813526 CGTCGCTCACGTCCTCCG 62.814 72.222 0.00 0.00 44.07 4.63
1162 1252 3.391382 GGACCAGACCACCCTCGG 61.391 72.222 0.00 0.00 0.00 4.63
1180 1276 1.139095 GCTCGTCGGAGTCGGAATT 59.861 57.895 1.41 0.00 42.53 2.17
1365 1461 3.791586 GTCTCAGCCTGGGCCTCC 61.792 72.222 4.53 0.00 43.17 4.30
1366 1462 4.154347 CGTCTCAGCCTGGGCCTC 62.154 72.222 4.53 0.00 43.17 4.70
1581 1678 1.617322 AGCTTGTACGGTCACAGAGA 58.383 50.000 0.00 0.00 0.00 3.10
1586 1683 2.486982 TCAGACTAGCTTGTACGGTCAC 59.513 50.000 0.00 0.00 0.00 3.67
1686 1783 2.034812 GTGCTCCTACCAAGATACCTCG 59.965 54.545 0.00 0.00 0.00 4.63
1710 1807 6.815641 ACAGTTGATTCACTCTAAGCATGTAG 59.184 38.462 0.00 0.00 0.00 2.74
1711 1808 6.701340 ACAGTTGATTCACTCTAAGCATGTA 58.299 36.000 0.00 0.00 0.00 2.29
1841 1938 5.974108 TGCAGTTAGGTACCAGTTTATCTC 58.026 41.667 15.94 0.00 0.00 2.75
1852 1949 7.603024 AGAGAGTAACAAAATGCAGTTAGGTAC 59.397 37.037 0.00 2.96 31.45 3.34
1876 1973 2.229543 GTGCCAAGCAATCAATGACAGA 59.770 45.455 0.00 0.00 41.47 3.41
1887 1984 4.082081 CCAATTTCTAGATGTGCCAAGCAA 60.082 41.667 0.00 0.00 41.47 3.91
1905 2005 6.239036 GGAGCAAACTTCAAACTCTACCAATT 60.239 38.462 0.00 0.00 0.00 2.32
1982 2082 5.682234 ACATGGACATATCAGTCAGACAA 57.318 39.130 2.66 0.00 40.29 3.18
1997 2097 7.881775 AAGTCCCTGAATTAATAACATGGAC 57.118 36.000 24.90 24.90 44.00 4.02
2024 2124 0.530288 CCATAACTTTTGGCCACCGG 59.470 55.000 3.88 0.00 0.00 5.28
2165 2303 2.977405 AGCAAATCAACGAAGTCAGC 57.023 45.000 0.00 0.00 45.00 4.26
2257 2395 5.280654 TGATCTCATCAAACCGATCATGA 57.719 39.130 0.00 0.00 37.82 3.07
2258 2396 5.996669 TTGATCTCATCAAACCGATCATG 57.003 39.130 0.00 0.00 45.57 3.07
2269 2407 8.439172 TGAACATAATGGGTATTGATCTCATCA 58.561 33.333 0.00 0.00 37.55 3.07
2270 2408 8.853077 TGAACATAATGGGTATTGATCTCATC 57.147 34.615 0.00 0.00 0.00 2.92
2271 2409 9.071276 GTTGAACATAATGGGTATTGATCTCAT 57.929 33.333 0.00 0.00 0.00 2.90
2272 2410 8.052141 TGTTGAACATAATGGGTATTGATCTCA 58.948 33.333 0.00 0.00 0.00 3.27
2273 2411 8.450578 TGTTGAACATAATGGGTATTGATCTC 57.549 34.615 0.00 0.00 0.00 2.75
2274 2412 8.853126 CATGTTGAACATAATGGGTATTGATCT 58.147 33.333 10.89 0.00 36.53 2.75
2275 2413 8.849168 TCATGTTGAACATAATGGGTATTGATC 58.151 33.333 10.89 0.00 36.53 2.92
2276 2414 8.632679 GTCATGTTGAACATAATGGGTATTGAT 58.367 33.333 10.89 0.00 36.53 2.57
2277 2415 7.613411 TGTCATGTTGAACATAATGGGTATTGA 59.387 33.333 10.89 0.00 36.53 2.57
2278 2416 7.770201 TGTCATGTTGAACATAATGGGTATTG 58.230 34.615 10.89 0.00 36.53 1.90
2279 2417 7.615365 ACTGTCATGTTGAACATAATGGGTATT 59.385 33.333 10.89 0.00 36.53 1.89
2280 2418 7.067372 CACTGTCATGTTGAACATAATGGGTAT 59.933 37.037 10.89 0.00 36.53 2.73
2281 2419 6.374053 CACTGTCATGTTGAACATAATGGGTA 59.626 38.462 10.89 0.00 36.53 3.69
2282 2420 5.183713 CACTGTCATGTTGAACATAATGGGT 59.816 40.000 10.89 4.26 36.53 4.51
2283 2421 5.183713 ACACTGTCATGTTGAACATAATGGG 59.816 40.000 10.89 5.63 36.53 4.00
2284 2422 6.258230 ACACTGTCATGTTGAACATAATGG 57.742 37.500 10.89 4.99 36.53 3.16
2285 2423 8.453320 ACATACACTGTCATGTTGAACATAATG 58.547 33.333 10.89 7.51 36.53 1.90
2286 2424 8.565896 ACATACACTGTCATGTTGAACATAAT 57.434 30.769 10.89 0.00 36.53 1.28
2287 2425 7.977789 ACATACACTGTCATGTTGAACATAA 57.022 32.000 10.89 0.00 36.53 1.90
2288 2426 7.977789 AACATACACTGTCATGTTGAACATA 57.022 32.000 10.89 0.00 42.33 2.29
2289 2427 6.882610 AACATACACTGTCATGTTGAACAT 57.117 33.333 4.72 4.72 42.33 2.71
2290 2428 6.317391 TGAAACATACACTGTCATGTTGAACA 59.683 34.615 14.62 0.00 42.93 3.18
2291 2429 6.724263 TGAAACATACACTGTCATGTTGAAC 58.276 36.000 14.62 11.03 42.93 3.18
2292 2430 6.934048 TGAAACATACACTGTCATGTTGAA 57.066 33.333 14.62 6.74 42.93 2.69
2293 2431 6.568271 GCATGAAACATACACTGTCATGTTGA 60.568 38.462 14.62 7.94 42.93 3.18
2294 2432 5.570206 GCATGAAACATACACTGTCATGTTG 59.430 40.000 14.62 7.26 42.93 3.33
2295 2433 5.335897 GGCATGAAACATACACTGTCATGTT 60.336 40.000 12.16 10.13 45.03 2.71
2296 2434 4.156556 GGCATGAAACATACACTGTCATGT 59.843 41.667 12.16 0.00 40.05 3.21
2297 2435 4.397103 AGGCATGAAACATACACTGTCATG 59.603 41.667 0.00 7.43 40.50 3.07
2298 2436 4.592942 AGGCATGAAACATACACTGTCAT 58.407 39.130 0.00 0.00 36.98 3.06
2299 2437 4.019792 AGGCATGAAACATACACTGTCA 57.980 40.909 0.00 0.00 36.98 3.58
2300 2438 5.376854 AAAGGCATGAAACATACACTGTC 57.623 39.130 0.00 0.00 36.98 3.51
2301 2439 4.218417 GGAAAGGCATGAAACATACACTGT 59.782 41.667 0.00 0.00 40.84 3.55
2302 2440 4.380867 GGGAAAGGCATGAAACATACACTG 60.381 45.833 0.00 0.00 0.00 3.66
2303 2441 3.763897 GGGAAAGGCATGAAACATACACT 59.236 43.478 0.00 0.00 0.00 3.55
2304 2442 3.119137 GGGGAAAGGCATGAAACATACAC 60.119 47.826 0.00 0.00 0.00 2.90
2305 2443 3.096092 GGGGAAAGGCATGAAACATACA 58.904 45.455 0.00 0.00 0.00 2.29
2306 2444 2.430694 GGGGGAAAGGCATGAAACATAC 59.569 50.000 0.00 0.00 0.00 2.39
2307 2445 2.314549 AGGGGGAAAGGCATGAAACATA 59.685 45.455 0.00 0.00 0.00 2.29
2308 2446 1.079323 AGGGGGAAAGGCATGAAACAT 59.921 47.619 0.00 0.00 0.00 2.71
2309 2447 0.486879 AGGGGGAAAGGCATGAAACA 59.513 50.000 0.00 0.00 0.00 2.83
2310 2448 2.525105 TAGGGGGAAAGGCATGAAAC 57.475 50.000 0.00 0.00 0.00 2.78
2311 2449 2.858768 AGATAGGGGGAAAGGCATGAAA 59.141 45.455 0.00 0.00 0.00 2.69
2312 2450 2.175499 CAGATAGGGGGAAAGGCATGAA 59.825 50.000 0.00 0.00 0.00 2.57
2313 2451 1.776667 CAGATAGGGGGAAAGGCATGA 59.223 52.381 0.00 0.00 0.00 3.07
2314 2452 1.496429 ACAGATAGGGGGAAAGGCATG 59.504 52.381 0.00 0.00 0.00 4.06
2315 2453 1.912862 ACAGATAGGGGGAAAGGCAT 58.087 50.000 0.00 0.00 0.00 4.40
2316 2454 1.681229 AACAGATAGGGGGAAAGGCA 58.319 50.000 0.00 0.00 0.00 4.75
2317 2455 3.138468 ACATAACAGATAGGGGGAAAGGC 59.862 47.826 0.00 0.00 0.00 4.35
2318 2456 5.607171 AGTACATAACAGATAGGGGGAAAGG 59.393 44.000 0.00 0.00 0.00 3.11
2319 2457 6.749036 AGTACATAACAGATAGGGGGAAAG 57.251 41.667 0.00 0.00 0.00 2.62
2320 2458 7.367828 ACTAGTACATAACAGATAGGGGGAAA 58.632 38.462 0.00 0.00 0.00 3.13
2321 2459 6.930475 ACTAGTACATAACAGATAGGGGGAA 58.070 40.000 0.00 0.00 0.00 3.97
2322 2460 6.541264 ACTAGTACATAACAGATAGGGGGA 57.459 41.667 0.00 0.00 0.00 4.81
2323 2461 8.896722 AATACTAGTACATAACAGATAGGGGG 57.103 38.462 4.31 0.00 0.00 5.40
2324 2462 9.756571 AGAATACTAGTACATAACAGATAGGGG 57.243 37.037 4.31 0.00 0.00 4.79
2330 2468 9.836864 TCGGTAAGAATACTAGTACATAACAGA 57.163 33.333 4.31 4.26 32.36 3.41
2331 2469 9.875675 GTCGGTAAGAATACTAGTACATAACAG 57.124 37.037 4.31 2.08 32.36 3.16
2332 2470 9.618890 AGTCGGTAAGAATACTAGTACATAACA 57.381 33.333 4.31 0.00 32.36 2.41
2335 2473 8.982685 CGAAGTCGGTAAGAATACTAGTACATA 58.017 37.037 4.31 0.00 35.37 2.29
2336 2474 7.497249 ACGAAGTCGGTAAGAATACTAGTACAT 59.503 37.037 4.31 0.00 44.95 2.29
2337 2475 6.818644 ACGAAGTCGGTAAGAATACTAGTACA 59.181 38.462 4.31 0.00 44.95 2.90
2338 2476 7.240414 ACGAAGTCGGTAAGAATACTAGTAC 57.760 40.000 4.31 0.00 44.95 2.73
2339 2477 7.549134 TCAACGAAGTCGGTAAGAATACTAGTA 59.451 37.037 4.77 4.77 45.00 1.82
2340 2478 6.372659 TCAACGAAGTCGGTAAGAATACTAGT 59.627 38.462 0.00 0.00 45.00 2.57
2341 2479 6.779117 TCAACGAAGTCGGTAAGAATACTAG 58.221 40.000 5.60 0.00 45.00 2.57
2342 2480 6.741992 TCAACGAAGTCGGTAAGAATACTA 57.258 37.500 5.60 0.00 45.00 1.82
2343 2481 5.633830 TCAACGAAGTCGGTAAGAATACT 57.366 39.130 5.60 0.00 45.00 2.12
2344 2482 6.882458 AATCAACGAAGTCGGTAAGAATAC 57.118 37.500 5.60 0.00 45.00 1.89
2345 2483 6.183360 GCAAATCAACGAAGTCGGTAAGAATA 60.183 38.462 5.60 0.00 45.00 1.75
2346 2484 5.390567 GCAAATCAACGAAGTCGGTAAGAAT 60.391 40.000 5.60 0.00 45.00 2.40
2347 2485 4.084223 GCAAATCAACGAAGTCGGTAAGAA 60.084 41.667 5.60 0.00 45.00 2.52
2348 2486 3.430895 GCAAATCAACGAAGTCGGTAAGA 59.569 43.478 5.60 0.00 45.00 2.10
2349 2487 3.432252 AGCAAATCAACGAAGTCGGTAAG 59.568 43.478 5.60 0.00 45.00 2.34
2350 2488 3.395639 AGCAAATCAACGAAGTCGGTAA 58.604 40.909 5.60 0.00 45.00 2.85
2351 2489 3.034721 AGCAAATCAACGAAGTCGGTA 57.965 42.857 5.60 0.00 45.00 4.02
2352 2490 1.878953 AGCAAATCAACGAAGTCGGT 58.121 45.000 5.60 0.00 45.00 4.69
2353 2491 2.969443 AAGCAAATCAACGAAGTCGG 57.031 45.000 5.60 0.00 45.00 4.79
2354 2492 2.401720 GCAAAGCAAATCAACGAAGTCG 59.598 45.455 0.00 0.00 45.00 4.18
2355 2493 2.726241 GGCAAAGCAAATCAACGAAGTC 59.274 45.455 0.00 0.00 45.00 3.01
2357 2495 3.017265 AGGCAAAGCAAATCAACGAAG 57.983 42.857 0.00 0.00 0.00 3.79
2358 2496 3.122297 CAAGGCAAAGCAAATCAACGAA 58.878 40.909 0.00 0.00 0.00 3.85
2359 2497 2.100584 ACAAGGCAAAGCAAATCAACGA 59.899 40.909 0.00 0.00 0.00 3.85
2360 2498 2.472816 ACAAGGCAAAGCAAATCAACG 58.527 42.857 0.00 0.00 0.00 4.10
2361 2499 4.880886 AAACAAGGCAAAGCAAATCAAC 57.119 36.364 0.00 0.00 0.00 3.18
2362 2500 5.752955 GTCTAAACAAGGCAAAGCAAATCAA 59.247 36.000 0.00 0.00 0.00 2.57
2363 2501 5.163468 TGTCTAAACAAGGCAAAGCAAATCA 60.163 36.000 0.00 0.00 36.71 2.57
2364 2502 5.288804 TGTCTAAACAAGGCAAAGCAAATC 58.711 37.500 0.00 0.00 36.71 2.17
2365 2503 5.275067 TGTCTAAACAAGGCAAAGCAAAT 57.725 34.783 0.00 0.00 36.71 2.32
2366 2504 4.727507 TGTCTAAACAAGGCAAAGCAAA 57.272 36.364 0.00 0.00 36.71 3.68
2367 2505 4.727507 TTGTCTAAACAAGGCAAAGCAA 57.272 36.364 0.00 0.00 46.69 3.91
2377 2515 3.137544 TCTTGGCCTCCTTGTCTAAACAA 59.862 43.478 3.32 0.00 43.06 2.83
2378 2516 2.708861 TCTTGGCCTCCTTGTCTAAACA 59.291 45.455 3.32 0.00 0.00 2.83
2379 2517 3.418684 TCTTGGCCTCCTTGTCTAAAC 57.581 47.619 3.32 0.00 0.00 2.01
2380 2518 3.394606 ACTTCTTGGCCTCCTTGTCTAAA 59.605 43.478 3.32 0.00 0.00 1.85
2381 2519 2.979678 ACTTCTTGGCCTCCTTGTCTAA 59.020 45.455 3.32 0.00 0.00 2.10
2382 2520 2.567615 GACTTCTTGGCCTCCTTGTCTA 59.432 50.000 3.32 0.00 0.00 2.59
2383 2521 1.349357 GACTTCTTGGCCTCCTTGTCT 59.651 52.381 3.32 0.00 0.00 3.41
2384 2522 1.611936 GGACTTCTTGGCCTCCTTGTC 60.612 57.143 3.32 7.24 41.93 3.18
2385 2523 0.402121 GGACTTCTTGGCCTCCTTGT 59.598 55.000 3.32 0.00 41.93 3.16
2386 2524 3.256281 GGACTTCTTGGCCTCCTTG 57.744 57.895 3.32 0.00 41.93 3.61
2393 2531 3.680490 AGCTCTAAAAGGACTTCTTGGC 58.320 45.455 0.00 0.00 35.55 4.52
2394 2532 3.929610 CGAGCTCTAAAAGGACTTCTTGG 59.070 47.826 12.85 0.00 35.55 3.61
2395 2533 3.929610 CCGAGCTCTAAAAGGACTTCTTG 59.070 47.826 12.85 0.00 35.55 3.02
2396 2534 3.055747 CCCGAGCTCTAAAAGGACTTCTT 60.056 47.826 12.85 0.00 37.28 2.52
2397 2535 2.498078 CCCGAGCTCTAAAAGGACTTCT 59.502 50.000 12.85 0.00 0.00 2.85
2398 2536 2.894902 CCCGAGCTCTAAAAGGACTTC 58.105 52.381 12.85 0.00 0.00 3.01
2399 2537 1.066071 GCCCGAGCTCTAAAAGGACTT 60.066 52.381 12.85 0.00 35.50 3.01
2400 2538 0.537653 GCCCGAGCTCTAAAAGGACT 59.462 55.000 12.85 0.00 35.50 3.85
2401 2539 3.067074 GCCCGAGCTCTAAAAGGAC 57.933 57.895 12.85 0.00 35.50 3.85
2412 2550 2.656069 TTCTACCACCAGCCCGAGC 61.656 63.158 0.00 0.00 40.32 5.03
2413 2551 1.218316 GTTCTACCACCAGCCCGAG 59.782 63.158 0.00 0.00 0.00 4.63
2414 2552 1.229082 AGTTCTACCACCAGCCCGA 60.229 57.895 0.00 0.00 0.00 5.14
2415 2553 1.218316 GAGTTCTACCACCAGCCCG 59.782 63.158 0.00 0.00 0.00 6.13
2416 2554 0.912486 ATGAGTTCTACCACCAGCCC 59.088 55.000 0.00 0.00 0.00 5.19
2417 2555 1.555075 TCATGAGTTCTACCACCAGCC 59.445 52.381 0.00 0.00 0.00 4.85
2418 2556 3.201290 CATCATGAGTTCTACCACCAGC 58.799 50.000 0.09 0.00 0.00 4.85
2419 2557 4.478206 ACATCATGAGTTCTACCACCAG 57.522 45.455 0.09 0.00 0.00 4.00
2420 2558 4.908601 AACATCATGAGTTCTACCACCA 57.091 40.909 0.09 0.00 0.00 4.17
2421 2559 5.585047 GGTTAACATCATGAGTTCTACCACC 59.415 44.000 21.40 14.50 35.53 4.61
2422 2560 6.170506 TGGTTAACATCATGAGTTCTACCAC 58.829 40.000 23.07 12.54 38.14 4.16
2423 2561 6.367374 TGGTTAACATCATGAGTTCTACCA 57.633 37.500 23.07 23.07 39.46 3.25
2424 2562 7.047891 TCATGGTTAACATCATGAGTTCTACC 58.952 38.462 18.19 20.56 43.09 3.18
2443 2581 3.912496 TCTCATCAAACCGATCATGGT 57.088 42.857 0.00 0.00 46.67 3.55
2531 2669 9.677567 GCAAATCAACAAAGTCAGTAAGAATAA 57.322 29.630 0.00 0.00 0.00 1.40
2739 2878 7.148000 GCCTCCTTGTCTAAATAAAGCAAAGAT 60.148 37.037 0.00 0.00 0.00 2.40
2750 2889 4.043435 ACTTCTTGGCCTCCTTGTCTAAAT 59.957 41.667 3.32 0.00 0.00 1.40
2810 2949 7.498239 GGTTCCTTCTAGATAACCATGGTTAAC 59.502 40.741 34.93 31.59 42.82 2.01
3047 3186 5.292834 TGTTAACATTTGGTGCATTGTTGTG 59.707 36.000 3.59 0.00 34.39 3.33
3147 3286 3.054065 AGGGAGGAATGGATTCACACTTC 60.054 47.826 1.94 0.00 38.53 3.01
3165 3304 4.343526 CAGCTAGCAATCTCTAAGAAGGGA 59.656 45.833 18.83 0.00 36.39 4.20
3277 3416 8.209917 ACTTAAAGTTCGATGTGAGTTCTTTT 57.790 30.769 0.00 0.00 31.45 2.27
3324 3463 0.822121 GGGGGTTCTTGCTTTGACGT 60.822 55.000 0.00 0.00 0.00 4.34
3401 3540 3.932710 GAGAACTATGTGCCATTCGAACA 59.067 43.478 0.00 0.00 0.00 3.18
3441 3580 1.214175 TGCCTTCACTCCAAAACTGGA 59.786 47.619 0.00 0.00 36.40 3.86
3470 3609 4.458397 CAGTATTTCCATGCTCACCAGAT 58.542 43.478 0.00 0.00 0.00 2.90
3539 3678 7.066163 TGGCTATTTGATGTTGATACAGTTGAG 59.934 37.037 0.00 0.00 37.77 3.02
3633 3772 7.977853 GGCAATGTTTTGATGAAATATCTGAGT 59.022 33.333 0.00 0.00 34.60 3.41
3976 4115 2.816087 ACTGCTCTACTGGTTGCAATTG 59.184 45.455 0.59 0.00 34.90 2.32
4086 4225 1.799933 TGCCATTTCCCCACTTTGTT 58.200 45.000 0.00 0.00 0.00 2.83
4171 4310 1.271325 TGGAGCTCCAAATCGCAAAGA 60.271 47.619 33.41 4.79 44.35 2.52
4176 4315 1.012841 CTTCTGGAGCTCCAAATCGC 58.987 55.000 34.30 6.93 46.97 4.58
4212 4351 3.810310 AGCAGATAGGCTACAGTTGAC 57.190 47.619 0.00 0.00 43.70 3.18
4218 4357 5.055265 AGTTCTCTAGCAGATAGGCTACA 57.945 43.478 0.00 0.00 43.70 2.74
4227 4366 6.665680 AGTATTTCCTGAAGTTCTCTAGCAGA 59.334 38.462 4.17 0.00 31.94 4.26
4242 4381 5.661056 TGACCACAGAGTAGTATTTCCTG 57.339 43.478 0.00 0.00 0.00 3.86
4327 4466 5.192923 AGCACAATACCCCAAGATTAGGTAA 59.807 40.000 0.00 0.00 39.50 2.85
4332 4471 6.668645 ACATTAGCACAATACCCCAAGATTA 58.331 36.000 0.00 0.00 0.00 1.75
4334 4473 5.129368 ACATTAGCACAATACCCCAAGAT 57.871 39.130 0.00 0.00 0.00 2.40
4396 4537 9.026121 GGACATGTACAAGAGTATGGAGTATAT 57.974 37.037 2.19 0.00 31.84 0.86
4397 4538 8.225416 AGGACATGTACAAGAGTATGGAGTATA 58.775 37.037 11.55 0.00 31.84 1.47
4398 4539 7.069986 AGGACATGTACAAGAGTATGGAGTAT 58.930 38.462 11.55 0.00 31.84 2.12
4405 4588 8.598041 AGAAGAAAAGGACATGTACAAGAGTAT 58.402 33.333 11.55 0.00 31.84 2.12
4417 4648 6.736794 GCACACATTTCAGAAGAAAAGGACAT 60.737 38.462 0.00 0.00 46.06 3.06
4484 4715 2.556622 GCCGAGGAAATGGAGTTCAAAA 59.443 45.455 0.00 0.00 0.00 2.44
4559 4790 3.372440 AAAGTCCTGGGAAAGCCATAG 57.628 47.619 0.00 0.00 35.15 2.23
4615 4846 8.429237 TTGAATCCCACATACCAAGTAATTTT 57.571 30.769 0.00 0.00 0.00 1.82
4724 4955 6.585695 TCCGTAGTACTCATGAAGAAGTTT 57.414 37.500 0.00 0.00 0.00 2.66
4745 4976 5.410067 CACCACAACCAATCACAAATATCC 58.590 41.667 0.00 0.00 0.00 2.59
4759 4990 3.034030 GCAGAGTGCACCACAACC 58.966 61.111 14.63 0.00 44.26 3.77
4835 5066 9.705290 GGTAATGAAGCTTCCATTTTCTAAAAA 57.295 29.630 23.42 0.26 35.94 1.94
4874 5105 4.227300 TGGTTGTATTCATCCTTAGCTGGT 59.773 41.667 0.00 0.00 35.22 4.00
5019 5271 3.244582 ACATTTATGGCATGGCATGGAT 58.755 40.909 37.19 27.63 0.00 3.41
5066 5320 7.050377 CCATGGATAAGTTTGTCTGTATGTCT 58.950 38.462 5.56 0.00 0.00 3.41
5106 5361 4.516698 GTGGATACCATGCCAAATACAGAG 59.483 45.833 0.00 0.00 35.28 3.35
5112 5367 1.214175 TCCGTGGATACCATGCCAAAT 59.786 47.619 4.65 0.00 39.07 2.32
5115 5370 1.346395 GTATCCGTGGATACCATGCCA 59.654 52.381 22.94 0.00 46.68 4.92
5166 5421 9.948964 CCATGGTTGTCATATTCATCTAATCTA 57.051 33.333 2.57 0.00 34.12 1.98
5170 5425 6.910191 ACCCATGGTTGTCATATTCATCTAA 58.090 36.000 11.73 0.00 34.12 2.10
5253 5508 8.160106 GGATCCTACAAAATGGAATCAGACTAT 58.840 37.037 3.84 0.00 35.81 2.12
5317 5572 4.279671 GGCTACTGATTAAGAGCTCAGCTA 59.720 45.833 17.77 1.08 42.12 3.32
5489 5758 8.206126 TGACTGCCAATATAAGAAGGATCATA 57.794 34.615 0.00 0.00 0.00 2.15
5526 5795 7.062957 AGGATTTTACCTTGGGAATACTGATG 58.937 38.462 0.00 0.00 36.86 3.07
5637 5906 3.968265 ACTGCAGTTAGGCAAATACCAT 58.032 40.909 15.25 0.00 44.40 3.55
5773 6042 3.674997 TCTTTAGCACCAATCAGACCAC 58.325 45.455 0.00 0.00 0.00 4.16
5781 6050 7.465116 AGATAGCCATAATCTTTAGCACCAAT 58.535 34.615 0.00 0.00 29.18 3.16
5797 6066 5.670485 TGTGATTACGTTGAAGATAGCCAT 58.330 37.500 0.00 0.00 0.00 4.40
5811 6080 4.907579 TGCATGCTGTAATTGTGATTACG 58.092 39.130 20.33 0.00 46.90 3.18
5879 6151 9.507329 AGAAAATTTGAGCTACAGATTGTAAGA 57.493 29.630 0.00 0.00 34.31 2.10
5880 6152 9.552114 CAGAAAATTTGAGCTACAGATTGTAAG 57.448 33.333 0.00 0.00 34.31 2.34
5891 6163 6.995686 TCAGTGTAACCAGAAAATTTGAGCTA 59.004 34.615 0.00 0.00 37.80 3.32
5985 6257 3.251004 CAGCTAAAGCAAAAGTCCGACTT 59.749 43.478 8.03 8.03 45.16 3.01
6052 6324 5.733620 TTACCGACTTCCTACACAGAAAT 57.266 39.130 0.00 0.00 0.00 2.17
6080 6352 6.488344 ACTGACTTCCTCTTTTCAGGATTTTC 59.512 38.462 2.75 0.00 42.49 2.29
6082 6354 5.946486 ACTGACTTCCTCTTTTCAGGATTT 58.054 37.500 2.75 0.00 42.49 2.17
6083 6355 5.574970 ACTGACTTCCTCTTTTCAGGATT 57.425 39.130 2.75 0.00 42.49 3.01
6084 6356 6.882768 ATACTGACTTCCTCTTTTCAGGAT 57.117 37.500 2.75 0.00 42.49 3.24
6085 6357 7.147655 CCATATACTGACTTCCTCTTTTCAGGA 60.148 40.741 2.75 0.00 41.16 3.86
6086 6358 6.989169 CCATATACTGACTTCCTCTTTTCAGG 59.011 42.308 2.75 0.00 39.91 3.86
6087 6359 6.481644 GCCATATACTGACTTCCTCTTTTCAG 59.518 42.308 0.00 0.00 41.14 3.02
6088 6360 6.156949 AGCCATATACTGACTTCCTCTTTTCA 59.843 38.462 0.00 0.00 0.00 2.69
6127 6405 4.568956 CAAAAACCTCCAACATCCCATTC 58.431 43.478 0.00 0.00 0.00 2.67
6190 6468 3.872354 CACAAATCCGTGTGTTGTACAG 58.128 45.455 0.00 0.00 43.26 2.74
6238 6516 2.159627 GGAACGAAGACACGAAATGCAT 59.840 45.455 0.00 0.00 37.03 3.96
6247 6525 4.807304 TGTAAAGAACTGGAACGAAGACAC 59.193 41.667 0.00 0.00 0.00 3.67
6255 6533 5.348997 CCTCGAATCTGTAAAGAACTGGAAC 59.651 44.000 0.00 0.00 0.00 3.62
6337 6615 6.421801 GTCTATGCAAGTTTCACAAGCAAAAT 59.578 34.615 0.00 0.00 34.70 1.82
6439 6734 4.102524 AGGAACTTCAGTCACACAATGGTA 59.897 41.667 0.00 0.00 27.25 3.25
6604 6900 2.041216 ACCTCCGCCAAAAAGGTAAGAT 59.959 45.455 0.00 0.00 41.61 2.40
6821 7121 9.640963 GTAGTTCTAATAAAGACTGAAAGCTGA 57.359 33.333 0.00 0.00 37.60 4.26
6871 7175 1.939934 TGTGCGCTATAATTGACAGCC 59.060 47.619 9.73 0.00 31.43 4.85
7115 7688 0.681175 AGTCAAAGTGCCAATTGCCC 59.319 50.000 0.00 0.00 40.16 5.36
7221 7794 5.156355 ACTCATAGCAGAATTTTGCAAACG 58.844 37.500 21.65 8.20 46.47 3.60
7223 7796 5.927689 CCAACTCATAGCAGAATTTTGCAAA 59.072 36.000 21.65 8.05 46.47 3.68
7272 7845 1.145738 AGTGATTGCTGAACCCAAGGT 59.854 47.619 0.00 0.00 37.65 3.50
7378 7951 9.245962 CGAATCGTATGACCTAATTTAGACTTT 57.754 33.333 4.96 0.00 0.00 2.66
7394 7967 5.064198 ACATTTTACACCCACGAATCGTATG 59.936 40.000 8.35 9.95 38.32 2.39
7424 7997 3.374988 CCAAGATTACATCGAGCAGCAAA 59.625 43.478 0.00 0.00 0.00 3.68
7665 8397 2.889512 TCTTGACCAGGAGCAAGAGTA 58.110 47.619 19.27 4.76 43.88 2.59
7687 8419 3.406764 CAGAGCAGAGGCAAAGTTACTT 58.593 45.455 0.00 0.00 44.61 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.