Multiple sequence alignment - TraesCS3B01G323000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G323000 chr3B 100.000 3043 0 0 1 3043 522779387 522782429 0.000000e+00 5620
1 TraesCS3B01G323000 chr5D 94.289 2994 145 12 3 2984 350369563 350366584 0.000000e+00 4558
2 TraesCS3B01G323000 chr5D 93.445 2990 166 14 1 2977 320660569 320663541 0.000000e+00 4409
3 TraesCS3B01G323000 chr5D 92.921 3009 181 14 1 2990 134489789 134486794 0.000000e+00 4348
4 TraesCS3B01G323000 chr7D 94.229 2998 146 17 1 2984 550635853 550638837 0.000000e+00 4553
5 TraesCS3B01G323000 chr5B 93.900 3000 157 13 1 2984 184288911 184291900 0.000000e+00 4503
6 TraesCS3B01G323000 chr5B 93.347 3006 164 16 3 2987 478553805 478550815 0.000000e+00 4410
7 TraesCS3B01G323000 chr6B 93.145 3005 174 17 1 2986 197818462 197815471 0.000000e+00 4379
8 TraesCS3B01G323000 chr6B 93.095 2998 180 13 2 2980 521149775 521146786 0.000000e+00 4364
9 TraesCS3B01G323000 chr4B 92.717 3007 185 14 1 2988 564187560 564184569 0.000000e+00 4309
10 TraesCS3B01G323000 chr3A 98.276 58 1 0 2983 3040 516635364 516635421 5.370000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G323000 chr3B 522779387 522782429 3042 False 5620 5620 100.000 1 3043 1 chr3B.!!$F1 3042
1 TraesCS3B01G323000 chr5D 350366584 350369563 2979 True 4558 4558 94.289 3 2984 1 chr5D.!!$R2 2981
2 TraesCS3B01G323000 chr5D 320660569 320663541 2972 False 4409 4409 93.445 1 2977 1 chr5D.!!$F1 2976
3 TraesCS3B01G323000 chr5D 134486794 134489789 2995 True 4348 4348 92.921 1 2990 1 chr5D.!!$R1 2989
4 TraesCS3B01G323000 chr7D 550635853 550638837 2984 False 4553 4553 94.229 1 2984 1 chr7D.!!$F1 2983
5 TraesCS3B01G323000 chr5B 184288911 184291900 2989 False 4503 4503 93.900 1 2984 1 chr5B.!!$F1 2983
6 TraesCS3B01G323000 chr5B 478550815 478553805 2990 True 4410 4410 93.347 3 2987 1 chr5B.!!$R1 2984
7 TraesCS3B01G323000 chr6B 197815471 197818462 2991 True 4379 4379 93.145 1 2986 1 chr6B.!!$R1 2985
8 TraesCS3B01G323000 chr6B 521146786 521149775 2989 True 4364 4364 93.095 2 2980 1 chr6B.!!$R2 2978
9 TraesCS3B01G323000 chr4B 564184569 564187560 2991 True 4309 4309 92.717 1 2988 1 chr4B.!!$R1 2987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 434 0.749454 GGCCAGCGTTCATCTTCCAT 60.749 55.0 0.00 0.00 0.00 3.41 F
1112 1135 0.381089 GCAGCAATCAAGCTAGCAGG 59.619 55.0 18.83 8.47 44.54 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1277 0.234625 GAACACATGCTTCGCAACGA 59.765 50.0 0.00 0.0 43.62 3.85 R
2953 2991 0.040425 GGTTGCCGTTTGCTACAGTG 60.040 55.0 1.62 0.0 45.92 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.566036 CGCATCGCACGAAACTTAAAA 58.434 42.857 0.00 0.00 0.00 1.52
105 106 4.079961 GCCAGGCCCAGGGGAAAT 62.080 66.667 7.91 0.00 37.50 2.17
284 291 2.758852 TTTAGCCCCTCCCTCACCGT 62.759 60.000 0.00 0.00 0.00 4.83
411 419 4.329545 GTGCTCCTTCACCGGCCA 62.330 66.667 0.00 0.00 0.00 5.36
426 434 0.749454 GGCCAGCGTTCATCTTCCAT 60.749 55.000 0.00 0.00 0.00 3.41
618 628 3.006537 GCAATTCGTGGTAGGGCTAGATA 59.993 47.826 0.00 0.00 0.00 1.98
647 657 5.244178 AGCATGTGGTAGGCTAGATTAGTAC 59.756 44.000 0.00 0.00 46.08 2.73
758 768 8.995220 GTTGTTTGTTGTAGATGTATGTTCCTA 58.005 33.333 0.00 0.00 0.00 2.94
885 896 3.879295 GGTATGTTGTGTGCTATGCTCAT 59.121 43.478 0.00 0.00 34.62 2.90
889 900 3.569277 TGTTGTGTGCTATGCTCATTGTT 59.431 39.130 0.00 0.00 34.62 2.83
1005 1016 0.396417 AGGACTCGCAGCCTATGTCT 60.396 55.000 0.00 0.00 31.31 3.41
1006 1017 1.133761 AGGACTCGCAGCCTATGTCTA 60.134 52.381 0.00 0.00 31.31 2.59
1057 1068 3.114606 TCTGATTCCCTCTATGTGCCAA 58.885 45.455 0.00 0.00 0.00 4.52
1084 1098 0.687354 TGTTGAGCCAACTCCTCCTC 59.313 55.000 15.91 0.00 43.85 3.71
1092 1115 1.229464 AACTCCTCCTCCTGCTGCT 60.229 57.895 0.00 0.00 0.00 4.24
1112 1135 0.381089 GCAGCAATCAAGCTAGCAGG 59.619 55.000 18.83 8.47 44.54 4.85
1253 1277 3.554934 TCAAGAAGGTGCACTTGAACAT 58.445 40.909 17.98 0.00 45.83 2.71
1357 1381 2.355108 CGATGGATCCAAGTGTCCAAGT 60.355 50.000 20.67 0.00 46.78 3.16
1409 1433 3.935828 GAGAACACTTGCTCCATAGTTCC 59.064 47.826 0.00 0.00 36.84 3.62
1537 1567 2.390777 TAGGACCACCCAAGGGACGT 62.391 60.000 13.15 6.86 38.96 4.34
1648 1678 0.980423 GGTGAGCCTCTTGGTTCTCT 59.020 55.000 0.00 0.00 43.03 3.10
1672 1702 2.452116 CAGACTTCCCTGGGACACA 58.548 57.895 16.85 0.00 0.00 3.72
1693 1723 1.201647 GAACGTCGAGGTCCTTGATGA 59.798 52.381 28.62 7.50 35.19 2.92
1749 1779 2.158682 CCATTTGACCCCGTCCATGATA 60.159 50.000 0.00 0.00 29.17 2.15
1750 1780 3.141398 CATTTGACCCCGTCCATGATAG 58.859 50.000 0.00 0.00 29.17 2.08
1751 1781 1.128200 TTGACCCCGTCCATGATAGG 58.872 55.000 0.00 0.00 0.00 2.57
1752 1782 0.263468 TGACCCCGTCCATGATAGGA 59.737 55.000 0.00 0.00 34.64 2.94
1753 1783 1.343580 TGACCCCGTCCATGATAGGAA 60.344 52.381 0.00 0.00 39.92 3.36
1754 1784 1.344763 GACCCCGTCCATGATAGGAAG 59.655 57.143 0.00 0.00 39.92 3.46
1865 1895 2.586792 GAGTGCAAGCCCCTCGAT 59.413 61.111 0.00 0.00 0.00 3.59
1946 1976 2.350514 GCAGCTCTCAGCCACCTT 59.649 61.111 0.00 0.00 43.77 3.50
2006 2036 2.970639 GACGCTCACAGGGTGCTA 59.029 61.111 0.00 0.00 41.76 3.49
2078 2109 2.186644 CGTGCATGATCCCCGACA 59.813 61.111 0.00 0.00 0.00 4.35
2112 2143 2.643790 CGACGACGACGATGACGG 60.644 66.667 15.32 0.00 44.46 4.79
2232 2263 1.537814 TTGCGGTGGTAGGACGACAT 61.538 55.000 0.00 0.00 0.00 3.06
2385 2420 2.165845 GCTCCATTGATTTGCTGCTTCT 59.834 45.455 0.00 0.00 0.00 2.85
2392 2427 6.317140 CCATTGATTTGCTGCTTCTACTCTTA 59.683 38.462 0.00 0.00 0.00 2.10
2435 2470 0.533032 TGGTATGCCGTGTTCATCGA 59.467 50.000 0.00 0.00 37.67 3.59
2530 2565 2.180276 GAGGGTTCAAGACTAGGCAGA 58.820 52.381 0.00 0.00 0.00 4.26
2603 2638 0.108585 GACAGTGGCAAGGTTGGAGA 59.891 55.000 0.00 0.00 0.00 3.71
2650 2685 0.468226 TCGTCAGTTTGGGCTGAAGT 59.532 50.000 8.37 0.00 45.75 3.01
2703 2741 1.308783 TTGCTGTGTTGTGGCGTTGA 61.309 50.000 0.00 0.00 0.00 3.18
2847 2885 4.822036 ACAAAGTGCACTTGCGTATTAA 57.178 36.364 31.73 0.00 45.83 1.40
2873 2911 1.198713 CAGGGACACTAGATGCAGGT 58.801 55.000 0.00 0.00 0.00 4.00
2906 2944 2.321719 TGTAGATGGCGTATTAGGGCA 58.678 47.619 13.98 13.98 42.60 5.36
2952 2990 5.007626 GGTTGAAAAGTATATGCGATGCAGA 59.992 40.000 0.00 0.00 43.65 4.26
2953 2991 5.657470 TGAAAAGTATATGCGATGCAGAC 57.343 39.130 0.00 0.00 43.65 3.51
2959 2997 3.733443 ATATGCGATGCAGACACTGTA 57.267 42.857 0.00 0.00 43.65 2.74
2960 2998 1.931906 ATGCGATGCAGACACTGTAG 58.068 50.000 0.00 0.00 43.65 2.74
2966 3004 1.217001 TGCAGACACTGTAGCAAACG 58.783 50.000 6.36 0.00 33.48 3.60
2980 3018 1.139947 AAACGGCAACCAAACACGG 59.860 52.632 0.00 0.00 0.00 4.94
2990 3028 1.358759 CAAACACGGCCCAAGTGAC 59.641 57.895 15.23 0.00 41.83 3.67
2991 3029 1.101049 CAAACACGGCCCAAGTGACT 61.101 55.000 15.23 0.53 41.83 3.41
2992 3030 1.101049 AAACACGGCCCAAGTGACTG 61.101 55.000 15.23 0.00 41.83 3.51
2993 3031 3.357079 CACGGCCCAAGTGACTGC 61.357 66.667 3.33 0.00 41.83 4.40
2994 3032 3.872603 ACGGCCCAAGTGACTGCA 61.873 61.111 0.00 0.00 0.00 4.41
2995 3033 2.360350 CGGCCCAAGTGACTGCAT 60.360 61.111 0.00 0.00 0.00 3.96
2996 3034 2.401766 CGGCCCAAGTGACTGCATC 61.402 63.158 0.00 0.00 0.00 3.91
2997 3035 1.303561 GGCCCAAGTGACTGCATCA 60.304 57.895 0.00 0.00 33.79 3.07
2998 3036 0.895100 GGCCCAAGTGACTGCATCAA 60.895 55.000 0.00 0.00 39.72 2.57
2999 3037 0.242017 GCCCAAGTGACTGCATCAAC 59.758 55.000 0.00 0.00 39.72 3.18
3000 3038 0.518636 CCCAAGTGACTGCATCAACG 59.481 55.000 0.00 0.00 39.72 4.10
3001 3039 0.110056 CCAAGTGACTGCATCAACGC 60.110 55.000 0.00 0.00 39.72 4.84
3002 3040 0.587768 CAAGTGACTGCATCAACGCA 59.412 50.000 0.00 0.00 39.72 5.24
3003 3041 0.588252 AAGTGACTGCATCAACGCAC 59.412 50.000 0.00 0.00 39.72 5.34
3004 3042 0.250038 AGTGACTGCATCAACGCACT 60.250 50.000 0.00 0.00 39.72 4.40
3005 3043 0.164647 GTGACTGCATCAACGCACTC 59.835 55.000 0.00 0.00 39.72 3.51
3006 3044 0.950555 TGACTGCATCAACGCACTCC 60.951 55.000 0.00 0.00 36.86 3.85
3007 3045 0.671781 GACTGCATCAACGCACTCCT 60.672 55.000 0.00 0.00 36.86 3.69
3008 3046 0.671781 ACTGCATCAACGCACTCCTC 60.672 55.000 0.00 0.00 36.86 3.71
3009 3047 0.390866 CTGCATCAACGCACTCCTCT 60.391 55.000 0.00 0.00 36.86 3.69
3010 3048 0.671472 TGCATCAACGCACTCCTCTG 60.671 55.000 0.00 0.00 36.86 3.35
3011 3049 1.975363 GCATCAACGCACTCCTCTGC 61.975 60.000 0.00 0.00 0.00 4.26
3017 3055 3.555428 GCACTCCTCTGCGTGTTC 58.445 61.111 0.00 0.00 33.78 3.18
3018 3056 1.300931 GCACTCCTCTGCGTGTTCA 60.301 57.895 0.00 0.00 33.78 3.18
3019 3057 0.671781 GCACTCCTCTGCGTGTTCAT 60.672 55.000 0.00 0.00 33.78 2.57
3020 3058 1.073964 CACTCCTCTGCGTGTTCATG 58.926 55.000 0.00 0.00 0.00 3.07
3021 3059 0.969149 ACTCCTCTGCGTGTTCATGA 59.031 50.000 0.00 0.00 0.00 3.07
3022 3060 1.067283 ACTCCTCTGCGTGTTCATGAG 60.067 52.381 0.00 0.00 0.00 2.90
3023 3061 1.203287 CTCCTCTGCGTGTTCATGAGA 59.797 52.381 0.00 0.00 0.00 3.27
3024 3062 1.203287 TCCTCTGCGTGTTCATGAGAG 59.797 52.381 0.00 0.00 0.00 3.20
3025 3063 1.203287 CCTCTGCGTGTTCATGAGAGA 59.797 52.381 15.82 7.81 33.37 3.10
3026 3064 2.353109 CCTCTGCGTGTTCATGAGAGAA 60.353 50.000 15.82 0.00 33.37 2.87
3027 3065 2.665537 CTCTGCGTGTTCATGAGAGAAC 59.334 50.000 0.00 0.00 46.22 3.01
3036 3074 5.000012 GTTCATGAGAGAACGGATGTACT 58.000 43.478 0.00 0.00 38.58 2.73
3037 3075 6.132791 GTTCATGAGAGAACGGATGTACTA 57.867 41.667 0.00 0.00 38.58 1.82
3038 3076 6.202937 GTTCATGAGAGAACGGATGTACTAG 58.797 44.000 0.00 0.00 38.58 2.57
3039 3077 5.437946 TCATGAGAGAACGGATGTACTAGT 58.562 41.667 0.00 0.00 0.00 2.57
3040 3078 5.297029 TCATGAGAGAACGGATGTACTAGTG 59.703 44.000 5.39 0.00 0.00 2.74
3041 3079 3.377485 TGAGAGAACGGATGTACTAGTGC 59.623 47.826 5.39 4.49 0.00 4.40
3042 3080 2.688958 AGAGAACGGATGTACTAGTGCC 59.311 50.000 5.39 0.85 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.344942 CGGGTCACTTTCTTCTCGCG 61.345 60.000 0.00 0.00 0.00 5.87
14 15 2.572290 CCAAACGGGTCACTTTCTTCT 58.428 47.619 0.00 0.00 0.00 2.85
37 38 2.967076 CGCACAGTGAACGCAGGT 60.967 61.111 4.15 0.00 0.00 4.00
105 106 1.809619 GCTACTGCCGATTCGTGCA 60.810 57.895 17.28 17.28 33.65 4.57
214 219 0.254747 ATCCTCCCGCCGATTTTTCA 59.745 50.000 0.00 0.00 0.00 2.69
284 291 2.478335 GAATGGTGGCGGGAGTTGGA 62.478 60.000 0.00 0.00 0.00 3.53
395 403 4.020617 CTGGCCGGTGAAGGAGCA 62.021 66.667 2.29 0.00 0.00 4.26
411 419 1.091771 CGGCATGGAAGATGAACGCT 61.092 55.000 0.00 0.00 0.00 5.07
602 612 4.810790 CTTGAATATCTAGCCCTACCACG 58.189 47.826 0.00 0.00 0.00 4.94
618 628 2.814805 AGCCTACCACATGCTTGAAT 57.185 45.000 6.60 0.00 29.17 2.57
647 657 6.719365 CACAAGGTTCAACTTCAAACTCTAG 58.281 40.000 0.00 0.00 0.00 2.43
758 768 3.898123 AGCATACCGGACAATCTATGAGT 59.102 43.478 9.46 0.00 0.00 3.41
885 896 5.933187 ACAATCGTAGCACACATTAACAA 57.067 34.783 0.00 0.00 0.00 2.83
889 900 5.105675 TGTCCTACAATCGTAGCACACATTA 60.106 40.000 0.00 0.00 40.70 1.90
966 977 2.422597 TCGACAAACGATGGAGCAAAT 58.577 42.857 0.00 0.00 46.45 2.32
1005 1016 3.135348 CCTCTGAATCAGGTGCCATCTTA 59.865 47.826 10.71 0.00 31.51 2.10
1006 1017 2.092538 CCTCTGAATCAGGTGCCATCTT 60.093 50.000 10.71 0.00 31.51 2.40
1092 1115 1.092348 CTGCTAGCTTGATTGCTGCA 58.908 50.000 17.23 0.00 43.87 4.41
1112 1135 2.094338 CCATCCTTCTTTGCCTTTGCTC 60.094 50.000 0.00 0.00 38.71 4.26
1253 1277 0.234625 GAACACATGCTTCGCAACGA 59.765 50.000 0.00 0.00 43.62 3.85
1266 1290 0.531974 GCCCACAGAACTCGAACACA 60.532 55.000 0.00 0.00 0.00 3.72
1409 1433 2.103143 CGTAGTGCTCTGCCTCCG 59.897 66.667 0.00 0.00 0.00 4.63
1648 1678 1.993653 CCAGGGAAGTCTGGCATGA 59.006 57.895 0.00 0.00 46.47 3.07
1672 1702 1.202582 CATCAAGGACCTCGACGTTCT 59.797 52.381 0.00 0.00 0.00 3.01
1693 1723 4.335647 CAGCGGGCTTGTCAGGGT 62.336 66.667 0.00 0.00 0.00 4.34
1749 1779 3.309848 CCTCTCTTCCTCTTCCTCTTCCT 60.310 52.174 0.00 0.00 0.00 3.36
1750 1780 3.031013 CCTCTCTTCCTCTTCCTCTTCC 58.969 54.545 0.00 0.00 0.00 3.46
1751 1781 3.954258 CTCCTCTCTTCCTCTTCCTCTTC 59.046 52.174 0.00 0.00 0.00 2.87
1752 1782 3.309848 CCTCCTCTCTTCCTCTTCCTCTT 60.310 52.174 0.00 0.00 0.00 2.85
1753 1783 2.244769 CCTCCTCTCTTCCTCTTCCTCT 59.755 54.545 0.00 0.00 0.00 3.69
1754 1784 2.666317 CCTCCTCTCTTCCTCTTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
1865 1895 1.275666 CATACAGGTCAGGGTGGACA 58.724 55.000 0.00 0.00 39.59 4.02
2022 2052 3.437213 TCTAGTAGTAGTGCTTGCCCAA 58.563 45.455 4.51 0.00 0.00 4.12
2088 2119 4.806481 CGTCGTCGTCGTCGCCAT 62.806 66.667 8.64 0.00 40.72 4.40
2112 2143 3.847037 ACACAAAATGTACGTCGTCAC 57.153 42.857 0.00 0.00 40.88 3.67
2232 2263 1.780309 ACCACCACATCCAAAAGAGGA 59.220 47.619 0.00 0.00 43.01 3.71
2385 2420 5.152623 AGCAATGCACAAGAGTAAGAGTA 57.847 39.130 8.35 0.00 0.00 2.59
2392 2427 1.952367 GCCCTAGCAATGCACAAGAGT 60.952 52.381 8.35 0.00 39.53 3.24
2435 2470 6.906901 TGAACTATAAACCCCTAGAACCTCAT 59.093 38.462 0.00 0.00 0.00 2.90
2530 2565 2.772287 GGAGTAAGCTTGTTCTGCTGT 58.228 47.619 9.86 0.00 41.03 4.40
2603 2638 2.283145 AGCAGCTTCCACTTTGACAT 57.717 45.000 0.00 0.00 0.00 3.06
2703 2741 2.568956 ACAGTGATCACACCTAGCACAT 59.431 45.455 27.02 0.00 46.99 3.21
2821 2859 0.652071 GCAAGTGCACTTTGTTTGGC 59.348 50.000 29.23 22.90 41.59 4.52
2847 2885 3.181461 GCATCTAGTGTCCCTGCATTAGT 60.181 47.826 0.00 0.00 32.63 2.24
2873 2911 4.214545 CGCCATCTACAACTTGTTTGGTTA 59.785 41.667 14.74 0.00 39.84 2.85
2906 2944 3.068590 CCAGTCTGGTTGAGCAAAAACAT 59.931 43.478 11.09 0.00 31.35 2.71
2939 2977 2.609427 ACAGTGTCTGCATCGCATAT 57.391 45.000 0.00 0.00 38.13 1.78
2952 2990 0.661020 GTTGCCGTTTGCTACAGTGT 59.339 50.000 0.00 0.00 43.93 3.55
2953 2991 0.040425 GGTTGCCGTTTGCTACAGTG 60.040 55.000 1.62 0.00 45.92 3.66
2959 2997 0.459411 GTGTTTGGTTGCCGTTTGCT 60.459 50.000 0.00 0.00 42.00 3.91
2960 2998 1.747686 CGTGTTTGGTTGCCGTTTGC 61.748 55.000 0.00 0.00 41.77 3.68
2966 3004 4.293648 GGGCCGTGTTTGGTTGCC 62.294 66.667 0.00 0.00 41.42 4.52
2980 3018 0.242017 GTTGATGCAGTCACTTGGGC 59.758 55.000 0.00 0.00 36.32 5.36
2991 3029 0.671472 CAGAGGAGTGCGTTGATGCA 60.671 55.000 0.00 0.00 43.95 3.96
2992 3030 1.975363 GCAGAGGAGTGCGTTGATGC 61.975 60.000 0.00 0.00 32.74 3.91
2993 3031 2.084844 GCAGAGGAGTGCGTTGATG 58.915 57.895 0.00 0.00 32.74 3.07
2994 3032 4.606071 GCAGAGGAGTGCGTTGAT 57.394 55.556 0.00 0.00 32.74 2.57
3002 3040 0.969149 TCATGAACACGCAGAGGAGT 59.031 50.000 0.00 0.00 0.00 3.85
3003 3041 1.203287 TCTCATGAACACGCAGAGGAG 59.797 52.381 0.00 0.00 0.00 3.69
3004 3042 1.203287 CTCTCATGAACACGCAGAGGA 59.797 52.381 0.00 0.00 0.00 3.71
3005 3043 1.203287 TCTCTCATGAACACGCAGAGG 59.797 52.381 0.00 0.00 32.87 3.69
3006 3044 2.643933 TCTCTCATGAACACGCAGAG 57.356 50.000 0.00 0.00 33.23 3.35
3007 3045 2.677199 GTTCTCTCATGAACACGCAGA 58.323 47.619 0.00 0.00 44.00 4.26
3008 3046 1.388093 CGTTCTCTCATGAACACGCAG 59.612 52.381 0.00 0.00 44.59 5.18
3009 3047 1.418373 CGTTCTCTCATGAACACGCA 58.582 50.000 0.00 0.00 44.59 5.24
3010 3048 0.716108 CCGTTCTCTCATGAACACGC 59.284 55.000 0.00 0.00 44.59 5.34
3011 3049 2.347697 TCCGTTCTCTCATGAACACG 57.652 50.000 0.00 2.95 44.59 4.49
3012 3050 3.589988 ACATCCGTTCTCTCATGAACAC 58.410 45.455 0.00 0.00 44.59 3.32
3013 3051 3.961480 ACATCCGTTCTCTCATGAACA 57.039 42.857 0.00 0.00 44.59 3.18
3014 3052 5.000012 AGTACATCCGTTCTCTCATGAAC 58.000 43.478 0.00 0.00 41.91 3.18
3015 3053 5.886474 ACTAGTACATCCGTTCTCTCATGAA 59.114 40.000 0.00 0.00 0.00 2.57
3016 3054 5.297029 CACTAGTACATCCGTTCTCTCATGA 59.703 44.000 0.00 0.00 0.00 3.07
3017 3055 5.515184 CACTAGTACATCCGTTCTCTCATG 58.485 45.833 0.00 0.00 0.00 3.07
3018 3056 4.036971 GCACTAGTACATCCGTTCTCTCAT 59.963 45.833 0.00 0.00 0.00 2.90
3019 3057 3.377485 GCACTAGTACATCCGTTCTCTCA 59.623 47.826 0.00 0.00 0.00 3.27
3020 3058 3.243134 GGCACTAGTACATCCGTTCTCTC 60.243 52.174 0.00 0.00 0.00 3.20
3021 3059 2.688958 GGCACTAGTACATCCGTTCTCT 59.311 50.000 0.00 0.00 0.00 3.10
3022 3060 3.081329 GGCACTAGTACATCCGTTCTC 57.919 52.381 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.