Multiple sequence alignment - TraesCS3B01G322600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G322600 chr3B 100.000 9865 0 0 1 9865 521799630 521789766 0.000000e+00 18218
1 TraesCS3B01G322600 chr3B 96.025 629 20 4 326 951 522250334 522250960 0.000000e+00 1018
2 TraesCS3B01G322600 chr3B 84.375 192 24 6 775 964 252828134 252828321 6.090000e-42 183
3 TraesCS3B01G322600 chr3D 97.823 5971 109 12 2141 8096 396609174 396603210 0.000000e+00 10286
4 TraesCS3B01G322600 chr3D 96.337 1092 40 0 8774 9865 396435599 396434508 0.000000e+00 1796
5 TraesCS3B01G322600 chr3D 94.422 753 33 8 978 1726 396609942 396609195 0.000000e+00 1149
6 TraesCS3B01G322600 chr3D 94.606 482 22 4 8171 8651 396603186 396602708 0.000000e+00 743
7 TraesCS3B01G322600 chr3D 82.752 487 40 21 274 718 157547567 157547083 2.580000e-105 394
8 TraesCS3B01G322600 chr3D 89.583 288 14 3 1 278 157547881 157547600 1.580000e-92 351
9 TraesCS3B01G322600 chr3D 89.076 238 23 3 733 968 157547098 157546862 9.690000e-75 292
10 TraesCS3B01G322600 chr3D 92.258 155 8 3 1722 1873 288550598 288550445 6.000000e-52 217
11 TraesCS3B01G322600 chr3A 95.713 5761 155 30 1856 7574 516127206 516121496 0.000000e+00 9186
12 TraesCS3B01G322600 chr3A 94.000 1700 90 9 8171 9865 516120899 516119207 0.000000e+00 2564
13 TraesCS3B01G322600 chr3A 90.885 768 36 17 978 1726 516127986 516127234 0.000000e+00 1000
14 TraesCS3B01G322600 chr3A 94.454 613 28 2 1 607 710893203 710893815 0.000000e+00 939
15 TraesCS3B01G322600 chr3A 95.611 524 23 0 7573 8096 516121446 516120923 0.000000e+00 841
16 TraesCS3B01G322600 chr3A 80.826 751 74 30 274 965 740805002 740805741 8.780000e-145 525
17 TraesCS3B01G322600 chr3A 91.696 289 13 3 1 278 740804681 740804969 3.340000e-104 390
18 TraesCS3B01G322600 chr3A 86.735 294 30 5 7807 8096 618881765 618881477 1.600000e-82 318
19 TraesCS3B01G322600 chr3A 90.377 239 22 1 726 964 710896098 710896335 7.440000e-81 313
20 TraesCS3B01G322600 chr2D 91.003 289 15 3 1 278 615479574 615479286 7.230000e-101 379
21 TraesCS3B01G322600 chr2D 83.556 225 17 10 274 481 615479253 615479032 1.010000e-44 193
22 TraesCS3B01G322600 chrUn 87.755 294 26 6 7807 8096 238238114 238238401 1.590000e-87 335
23 TraesCS3B01G322600 chr5B 86.735 294 27 9 7807 8096 590364416 590364131 5.750000e-82 316
24 TraesCS3B01G322600 chr6A 84.965 286 32 3 1 276 612532862 612533146 7.540000e-71 279
25 TraesCS3B01G322600 chr6A 96.528 144 4 1 1722 1864 538097692 538097835 4.610000e-58 237
26 TraesCS3B01G322600 chr6A 77.778 396 60 18 277 661 612533186 612533564 1.670000e-52 219
27 TraesCS3B01G322600 chr7B 85.408 233 28 6 735 965 673964433 673964205 4.610000e-58 237
28 TraesCS3B01G322600 chr7B 83.117 231 33 6 736 964 634773339 634773565 1.300000e-48 206
29 TraesCS3B01G322600 chr7B 82.627 236 27 3 1 226 117795954 117795723 7.820000e-46 196
30 TraesCS3B01G322600 chr7B 81.467 259 23 5 7838 8096 743208040 743207807 1.310000e-43 189
31 TraesCS3B01G322600 chr7B 77.820 266 35 10 275 524 117795707 117795450 1.030000e-29 143
32 TraesCS3B01G322600 chr6D 96.528 144 4 1 1722 1864 392273087 392273230 4.610000e-58 237
33 TraesCS3B01G322600 chr5D 95.804 143 4 2 1722 1862 175299917 175300059 7.710000e-56 230
34 TraesCS3B01G322600 chr4B 95.745 141 5 1 1722 1861 106227422 106227562 9.970000e-55 226
35 TraesCS3B01G322600 chr2A 95.139 144 5 2 1722 1863 176673278 176673421 9.970000e-55 226
36 TraesCS3B01G322600 chr2A 84.653 202 24 7 766 964 95961510 95961707 2.810000e-45 195
37 TraesCS3B01G322600 chr7D 94.521 146 7 1 1723 1867 34757004 34756859 3.590000e-54 224
38 TraesCS3B01G322600 chr4A 95.683 139 6 0 1723 1861 690411304 690411442 3.590000e-54 224
39 TraesCS3B01G322600 chr4A 84.188 234 31 6 735 966 698875303 698875532 1.290000e-53 222
40 TraesCS3B01G322600 chr2B 93.919 148 9 0 1722 1869 288939784 288939931 3.590000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G322600 chr3B 521789766 521799630 9864 True 18218.000000 18218 100.00000 1 9865 1 chr3B.!!$R1 9864
1 TraesCS3B01G322600 chr3B 522250334 522250960 626 False 1018.000000 1018 96.02500 326 951 1 chr3B.!!$F2 625
2 TraesCS3B01G322600 chr3D 396602708 396609942 7234 True 4059.333333 10286 95.61700 978 8651 3 chr3D.!!$R4 7673
3 TraesCS3B01G322600 chr3D 396434508 396435599 1091 True 1796.000000 1796 96.33700 8774 9865 1 chr3D.!!$R2 1091
4 TraesCS3B01G322600 chr3D 157546862 157547881 1019 True 345.666667 394 87.13700 1 968 3 chr3D.!!$R3 967
5 TraesCS3B01G322600 chr3A 516119207 516127986 8779 True 3397.750000 9186 94.05225 978 9865 4 chr3A.!!$R2 8887
6 TraesCS3B01G322600 chr3A 710893203 710896335 3132 False 626.000000 939 92.41550 1 964 2 chr3A.!!$F1 963
7 TraesCS3B01G322600 chr3A 740804681 740805741 1060 False 457.500000 525 86.26100 1 965 2 chr3A.!!$F2 964
8 TraesCS3B01G322600 chr2D 615479032 615479574 542 True 286.000000 379 87.27950 1 481 2 chr2D.!!$R1 480
9 TraesCS3B01G322600 chr6A 612532862 612533564 702 False 249.000000 279 81.37150 1 661 2 chr6A.!!$F2 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 3022 0.961019 AGCGTACGTCTACAACCCAA 59.039 50.000 17.90 0.00 0.00 4.12 F
1574 3911 1.954382 CAGATGGATGTTGATGGGCAG 59.046 52.381 0.00 0.00 0.00 4.85 F
2002 4367 0.327259 ACTGCCTGCATCACAGTGAT 59.673 50.000 10.53 10.53 45.68 3.06 F
2519 4886 2.157085 GCTAAACCTGCGTAGTGTCAAC 59.843 50.000 0.00 0.00 0.00 3.18 F
4254 6630 4.894784 AGCGAAAAATGAGTCAGAGGTTA 58.105 39.130 0.00 0.00 0.00 2.85 F
5238 7622 0.321919 GGTGGCAAGATCAGCTGACA 60.322 55.000 20.97 8.58 0.00 3.58 F
6162 8547 0.723790 CGCGCAAAGAAAGTGCTGAG 60.724 55.000 8.75 0.00 39.95 3.35 F
8016 10453 0.403655 TGACCCAGGCAATAACAGCA 59.596 50.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 3914 0.681733 TCTCTTCCAGCGCTTCACTT 59.318 50.000 7.5 0.0 0.00 3.16 R
2497 4864 1.341852 TGACACTACGCAGGTTTAGCA 59.658 47.619 0.0 0.0 0.00 3.49 R
4226 6602 5.931532 TCTGACTCATTTTTCGCTTCAATC 58.068 37.500 0.0 0.0 0.00 2.67 R
4569 6945 0.881118 GAAGAAACCATGCGAGCCAA 59.119 50.000 0.0 0.0 0.00 4.52 R
5997 8382 1.827969 CTTCGTCTCCTTCCTGTGGAT 59.172 52.381 0.0 0.0 32.56 3.41 R
6558 8943 1.846007 AGTTCCTGCTGAGATCGTCT 58.154 50.000 0.0 0.0 0.00 4.18 R
8137 10575 0.035534 ATGTAACACGCCTCCATGCA 60.036 50.000 0.0 0.0 0.00 3.96 R
9828 12272 1.227205 GAGCGACCTCATCTGGCTG 60.227 63.158 0.0 0.0 38.03 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.609947 TCAATAACAGTGTTTGCAGCAAG 58.390 39.130 14.90 0.00 0.00 4.01
240 253 2.483876 CGTTGAAGAGCACAGGAAGAA 58.516 47.619 0.00 0.00 0.00 2.52
243 256 3.558931 TGAAGAGCACAGGAAGAACAA 57.441 42.857 0.00 0.00 0.00 2.83
330 382 3.521937 AGAATGGAGACGGGTTTGGATTA 59.478 43.478 0.00 0.00 0.00 1.75
474 568 5.309638 AGACGGATCTCGAGAAGATGATAA 58.690 41.667 20.91 0.00 45.06 1.75
489 583 5.545588 AGATGATAAGACTGCAACGCATAT 58.454 37.500 0.00 0.00 38.13 1.78
494 588 2.698803 AGACTGCAACGCATATCACAA 58.301 42.857 0.00 0.00 38.13 3.33
498 592 3.310774 ACTGCAACGCATATCACAATCTC 59.689 43.478 0.00 0.00 38.13 2.75
650 2505 3.352611 AGTCCCAACTATCTAGCCCAT 57.647 47.619 0.00 0.00 32.59 4.00
698 2553 8.638565 GTTAGAAATTAAAGCGTACGTCTACAA 58.361 33.333 17.90 11.43 0.00 2.41
703 3022 0.961019 AGCGTACGTCTACAACCCAA 59.039 50.000 17.90 0.00 0.00 4.12
904 3225 5.989168 CGCCTATAACAATTCAGGTGATGTA 59.011 40.000 0.00 0.00 40.42 2.29
965 3286 7.604545 GTGCCCCTGTTTAGATATAGAAGATTC 59.395 40.741 0.00 0.00 0.00 2.52
966 3287 7.292356 TGCCCCTGTTTAGATATAGAAGATTCA 59.708 37.037 0.00 0.00 0.00 2.57
1082 3404 4.863707 GCTCGATTGCCTGATGGA 57.136 55.556 0.00 0.00 34.57 3.41
1348 3674 3.237741 CCTCCTGATCCCCCGCTC 61.238 72.222 0.00 0.00 0.00 5.03
1393 3721 2.094494 CGGTAATATCCTGCGCTGATCT 60.094 50.000 16.65 4.33 0.00 2.75
1420 3748 4.461081 TCAAGTTTCCCCAATTTGTATCGG 59.539 41.667 0.00 0.00 34.47 4.18
1574 3911 1.954382 CAGATGGATGTTGATGGGCAG 59.046 52.381 0.00 0.00 0.00 4.85
1577 3914 1.380246 GGATGTTGATGGGCAGCCA 60.380 57.895 15.19 0.00 40.55 4.75
1603 3940 1.342819 AGCGCTGGAAGAGATGGATAC 59.657 52.381 10.39 0.00 34.81 2.24
1614 3951 4.832492 AGAGATGGATACCCTGGTATTGT 58.168 43.478 10.10 0.53 40.93 2.71
1627 3965 4.398319 CTGGTATTGTGTCCCTTCTGTTT 58.602 43.478 0.00 0.00 0.00 2.83
1630 3968 1.305201 TTGTGTCCCTTCTGTTTCGC 58.695 50.000 0.00 0.00 0.00 4.70
1647 3985 2.846193 TCGCTCTTGTGCTAAAAACCT 58.154 42.857 0.00 0.00 0.00 3.50
1648 3986 3.997762 TCGCTCTTGTGCTAAAAACCTA 58.002 40.909 0.00 0.00 0.00 3.08
1653 3991 5.008712 GCTCTTGTGCTAAAAACCTAAGTGT 59.991 40.000 0.00 0.00 0.00 3.55
1659 3997 5.458779 GTGCTAAAAACCTAAGTGTTTGCTG 59.541 40.000 0.00 0.00 38.41 4.41
1660 3998 4.982295 GCTAAAAACCTAAGTGTTTGCTGG 59.018 41.667 0.00 0.00 38.41 4.85
1661 3999 5.451381 GCTAAAAACCTAAGTGTTTGCTGGT 60.451 40.000 0.00 0.00 38.41 4.00
1662 4000 4.385358 AAAACCTAAGTGTTTGCTGGTG 57.615 40.909 0.00 0.00 38.41 4.17
1664 4002 3.849563 ACCTAAGTGTTTGCTGGTGTA 57.150 42.857 0.00 0.00 0.00 2.90
1665 4003 4.367039 ACCTAAGTGTTTGCTGGTGTAT 57.633 40.909 0.00 0.00 0.00 2.29
1667 4005 5.137551 ACCTAAGTGTTTGCTGGTGTATTT 58.862 37.500 0.00 0.00 0.00 1.40
1668 4006 5.240844 ACCTAAGTGTTTGCTGGTGTATTTC 59.759 40.000 0.00 0.00 0.00 2.17
1716 4055 8.063153 TGGTACTACTATATGAGTTGAGGGAAA 58.937 37.037 0.00 0.00 39.81 3.13
1719 4058 5.896073 ACTATATGAGTTGAGGGAAAGGG 57.104 43.478 0.00 0.00 33.13 3.95
1720 4059 5.538877 ACTATATGAGTTGAGGGAAAGGGA 58.461 41.667 0.00 0.00 33.13 4.20
1721 4060 4.779993 ATATGAGTTGAGGGAAAGGGAC 57.220 45.455 0.00 0.00 0.00 4.46
1722 4061 1.814429 TGAGTTGAGGGAAAGGGACA 58.186 50.000 0.00 0.00 0.00 4.02
1723 4062 1.420138 TGAGTTGAGGGAAAGGGACAC 59.580 52.381 0.00 0.00 0.00 3.67
1725 4064 1.850345 AGTTGAGGGAAAGGGACACAA 59.150 47.619 0.00 0.00 0.00 3.33
1726 4065 2.243736 AGTTGAGGGAAAGGGACACAAA 59.756 45.455 0.00 0.00 0.00 2.83
1727 4066 3.117131 AGTTGAGGGAAAGGGACACAAAT 60.117 43.478 0.00 0.00 0.00 2.32
1728 4067 4.105697 AGTTGAGGGAAAGGGACACAAATA 59.894 41.667 0.00 0.00 0.00 1.40
1729 4068 4.946160 TGAGGGAAAGGGACACAAATAT 57.054 40.909 0.00 0.00 0.00 1.28
1730 4069 6.011981 AGTTGAGGGAAAGGGACACAAATATA 60.012 38.462 0.00 0.00 0.00 0.86
1731 4070 6.395780 TGAGGGAAAGGGACACAAATATAA 57.604 37.500 0.00 0.00 0.00 0.98
1732 4071 6.423182 TGAGGGAAAGGGACACAAATATAAG 58.577 40.000 0.00 0.00 0.00 1.73
1733 4072 6.216662 TGAGGGAAAGGGACACAAATATAAGA 59.783 38.462 0.00 0.00 0.00 2.10
1734 4073 7.091993 TGAGGGAAAGGGACACAAATATAAGAT 60.092 37.037 0.00 0.00 0.00 2.40
1735 4074 7.062957 AGGGAAAGGGACACAAATATAAGATG 58.937 38.462 0.00 0.00 0.00 2.90
1737 4076 7.342026 GGGAAAGGGACACAAATATAAGATGTT 59.658 37.037 0.00 0.00 0.00 2.71
1739 4078 9.178758 GAAAGGGACACAAATATAAGATGTTCT 57.821 33.333 0.00 0.00 0.00 3.01
1742 4081 9.614792 AGGGACACAAATATAAGATGTTCTAAC 57.385 33.333 0.00 0.00 0.00 2.34
1771 4110 9.435688 TTTTTGGATCCGATGTATATAGACATG 57.564 33.333 17.40 9.61 40.18 3.21
1772 4111 7.718334 TTGGATCCGATGTATATAGACATGT 57.282 36.000 17.40 0.00 40.18 3.21
1773 4112 7.718334 TGGATCCGATGTATATAGACATGTT 57.282 36.000 17.40 0.13 40.18 2.71
1774 4113 8.134202 TGGATCCGATGTATATAGACATGTTT 57.866 34.615 17.40 0.00 40.18 2.83
1775 4114 8.593679 TGGATCCGATGTATATAGACATGTTTT 58.406 33.333 17.40 0.72 40.18 2.43
1779 4118 9.908152 TCCGATGTATATAGACATGTTTTAGTG 57.092 33.333 17.40 0.00 40.18 2.74
1780 4119 9.692749 CCGATGTATATAGACATGTTTTAGTGT 57.307 33.333 17.40 0.00 40.18 3.55
1789 4128 7.151999 AGACATGTTTTAGTGTGTTTGTTCA 57.848 32.000 0.00 0.00 0.00 3.18
1790 4129 7.027161 AGACATGTTTTAGTGTGTTTGTTCAC 58.973 34.615 0.00 0.00 38.63 3.18
1791 4130 6.919721 ACATGTTTTAGTGTGTTTGTTCACT 58.080 32.000 0.00 0.00 45.21 3.41
1792 4131 7.027161 ACATGTTTTAGTGTGTTTGTTCACTC 58.973 34.615 0.00 0.00 42.77 3.51
1793 4132 6.561737 TGTTTTAGTGTGTTTGTTCACTCA 57.438 33.333 1.08 0.00 42.77 3.41
1794 4133 7.151999 TGTTTTAGTGTGTTTGTTCACTCAT 57.848 32.000 1.08 0.00 42.77 2.90
1795 4134 7.598278 TGTTTTAGTGTGTTTGTTCACTCATT 58.402 30.769 1.08 0.00 42.77 2.57
1796 4135 8.085296 TGTTTTAGTGTGTTTGTTCACTCATTT 58.915 29.630 1.08 0.00 42.77 2.32
1797 4136 8.583765 GTTTTAGTGTGTTTGTTCACTCATTTC 58.416 33.333 1.08 0.00 42.77 2.17
1798 4137 5.895636 AGTGTGTTTGTTCACTCATTTCA 57.104 34.783 0.00 0.00 40.28 2.69
1799 4138 5.883661 AGTGTGTTTGTTCACTCATTTCAG 58.116 37.500 0.00 0.00 40.28 3.02
1800 4139 5.415701 AGTGTGTTTGTTCACTCATTTCAGT 59.584 36.000 0.00 0.00 40.28 3.41
1801 4140 5.739161 GTGTGTTTGTTCACTCATTTCAGTC 59.261 40.000 0.00 0.00 38.90 3.51
1802 4141 5.163663 TGTGTTTGTTCACTCATTTCAGTCC 60.164 40.000 0.00 0.00 38.90 3.85
1803 4142 4.035091 TGTTTGTTCACTCATTTCAGTCCG 59.965 41.667 0.00 0.00 0.00 4.79
1804 4143 3.469008 TGTTCACTCATTTCAGTCCGT 57.531 42.857 0.00 0.00 0.00 4.69
1805 4144 4.594123 TGTTCACTCATTTCAGTCCGTA 57.406 40.909 0.00 0.00 0.00 4.02
1806 4145 5.147330 TGTTCACTCATTTCAGTCCGTAT 57.853 39.130 0.00 0.00 0.00 3.06
1807 4146 4.929211 TGTTCACTCATTTCAGTCCGTATG 59.071 41.667 0.00 0.00 0.00 2.39
1808 4147 4.801330 TCACTCATTTCAGTCCGTATGT 57.199 40.909 0.00 0.00 0.00 2.29
1809 4148 5.907866 TCACTCATTTCAGTCCGTATGTA 57.092 39.130 0.00 0.00 0.00 2.29
1810 4149 5.891451 TCACTCATTTCAGTCCGTATGTAG 58.109 41.667 0.00 0.00 0.00 2.74
1811 4150 5.417894 TCACTCATTTCAGTCCGTATGTAGT 59.582 40.000 0.00 0.00 0.00 2.73
1812 4151 5.744345 CACTCATTTCAGTCCGTATGTAGTC 59.256 44.000 0.00 0.00 0.00 2.59
1813 4152 5.163540 ACTCATTTCAGTCCGTATGTAGTCC 60.164 44.000 0.00 0.00 0.00 3.85
1814 4153 4.707934 TCATTTCAGTCCGTATGTAGTCCA 59.292 41.667 0.00 0.00 0.00 4.02
1815 4154 5.362717 TCATTTCAGTCCGTATGTAGTCCAT 59.637 40.000 0.00 0.00 37.58 3.41
1816 4155 6.548251 TCATTTCAGTCCGTATGTAGTCCATA 59.452 38.462 0.00 0.00 34.86 2.74
1817 4156 6.971726 TTTCAGTCCGTATGTAGTCCATAT 57.028 37.500 0.00 0.00 38.29 1.78
1818 4157 6.971726 TTCAGTCCGTATGTAGTCCATATT 57.028 37.500 0.00 0.00 38.29 1.28
1819 4158 6.327279 TCAGTCCGTATGTAGTCCATATTG 57.673 41.667 0.00 0.00 38.29 1.90
1820 4159 6.066032 TCAGTCCGTATGTAGTCCATATTGA 58.934 40.000 0.00 0.00 38.29 2.57
1821 4160 6.548251 TCAGTCCGTATGTAGTCCATATTGAA 59.452 38.462 0.00 0.00 38.29 2.69
1822 4161 7.068962 TCAGTCCGTATGTAGTCCATATTGAAA 59.931 37.037 0.00 0.00 38.29 2.69
1823 4162 7.872993 CAGTCCGTATGTAGTCCATATTGAAAT 59.127 37.037 0.00 0.00 38.29 2.17
1824 4163 9.085645 AGTCCGTATGTAGTCCATATTGAAATA 57.914 33.333 0.00 0.00 38.29 1.40
1825 4164 9.871238 GTCCGTATGTAGTCCATATTGAAATAT 57.129 33.333 0.00 0.00 38.29 1.28
1827 4166 9.314321 CCGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
1828 4167 9.869757 CGTATGTAGTCCATATTGAAATATCCA 57.130 33.333 0.00 0.00 38.29 3.41
1850 4189 9.787532 ATCCAAAACATCTTATATTTGTGAACG 57.212 29.630 0.00 0.00 32.29 3.95
1851 4190 8.240682 TCCAAAACATCTTATATTTGTGAACGG 58.759 33.333 0.00 0.00 32.29 4.44
1852 4191 8.240682 CCAAAACATCTTATATTTGTGAACGGA 58.759 33.333 0.00 0.00 32.29 4.69
1853 4192 9.277565 CAAAACATCTTATATTTGTGAACGGAG 57.722 33.333 0.00 0.00 0.00 4.63
1854 4193 7.553881 AACATCTTATATTTGTGAACGGAGG 57.446 36.000 0.00 0.00 0.00 4.30
1863 4202 2.322658 TGTGAACGGAGGGAGTAGTTT 58.677 47.619 0.00 0.00 0.00 2.66
1877 4216 9.597170 GAGGGAGTAGTTTCTAACGATTATTTT 57.403 33.333 0.00 0.00 36.23 1.82
1920 4259 3.384789 TGCTATGGTGCTCTTCGAGTAAT 59.615 43.478 0.00 0.00 31.39 1.89
1929 4268 8.421784 TGGTGCTCTTCGAGTAATTAAAGATAT 58.578 33.333 0.00 0.00 31.39 1.63
1930 4269 8.917655 GGTGCTCTTCGAGTAATTAAAGATATC 58.082 37.037 0.00 0.00 31.39 1.63
1931 4270 8.917655 GTGCTCTTCGAGTAATTAAAGATATCC 58.082 37.037 0.00 0.00 31.39 2.59
1934 4274 9.549509 CTCTTCGAGTAATTAAAGATATCCTCG 57.450 37.037 14.01 14.01 41.25 4.63
1945 4285 9.924650 ATTAAAGATATCCTCGTATGGTTACAC 57.075 33.333 0.00 0.00 0.00 2.90
1965 4305 9.967346 GTTACACAGCTCTTCTCATGTAATATA 57.033 33.333 0.00 0.00 36.53 0.86
2002 4367 0.327259 ACTGCCTGCATCACAGTGAT 59.673 50.000 10.53 10.53 45.68 3.06
2057 4422 4.589216 TTCTGAGCTGGAAATGGTTTTG 57.411 40.909 0.00 0.00 0.00 2.44
2078 4443 4.323417 TGGTGATGACAATCCACACTAAC 58.677 43.478 0.00 0.00 31.15 2.34
2118 4483 9.352784 GCAAATGCAAACAATAATCAGTTAGTA 57.647 29.630 0.00 0.00 41.59 1.82
2519 4886 2.157085 GCTAAACCTGCGTAGTGTCAAC 59.843 50.000 0.00 0.00 0.00 3.18
2734 5102 6.430000 GCTCACTCTTAACACCTTTGGAATTA 59.570 38.462 0.00 0.00 0.00 1.40
2749 5117 7.603404 CCTTTGGAATTAATTTCTGCACATGAA 59.397 33.333 7.98 0.00 34.56 2.57
3322 5694 7.524717 AGTTGTGTAACCATTATCAGCTTTT 57.475 32.000 0.00 0.00 37.52 2.27
4226 6602 6.775939 ATTGCATTCTGTAGATGTGTATCG 57.224 37.500 0.00 0.00 38.38 2.92
4254 6630 4.894784 AGCGAAAAATGAGTCAGAGGTTA 58.105 39.130 0.00 0.00 0.00 2.85
5238 7622 0.321919 GGTGGCAAGATCAGCTGACA 60.322 55.000 20.97 8.58 0.00 3.58
5997 8382 4.650734 TGACCAAGAAGTTGTATGCATCA 58.349 39.130 0.19 0.00 30.95 3.07
6124 8509 6.091441 GCAATCAGTACTTCAGTTACTCAAGG 59.909 42.308 0.44 0.00 0.00 3.61
6162 8547 0.723790 CGCGCAAAGAAAGTGCTGAG 60.724 55.000 8.75 0.00 39.95 3.35
6363 8748 1.080569 CAATTCGCCCAACAGCACC 60.081 57.895 0.00 0.00 0.00 5.01
6364 8749 1.530419 AATTCGCCCAACAGCACCA 60.530 52.632 0.00 0.00 0.00 4.17
6436 8821 4.696455 AGAAAACAAAAATGGTCAGGCAG 58.304 39.130 0.00 0.00 0.00 4.85
6558 8943 3.243501 GCAAAGATCAAACAGAAGGCACA 60.244 43.478 0.00 0.00 0.00 4.57
6592 8977 7.069578 TCAGCAGGAACTACCCTTTATTAGTAG 59.930 40.741 0.00 0.00 36.02 2.57
6693 9078 3.429410 GGCAAAACTTCCTGTGGATATGC 60.429 47.826 0.00 0.00 0.00 3.14
6734 9119 8.483758 ACTGGACGTCATAATAAAGTTCCTATT 58.516 33.333 18.91 0.00 0.00 1.73
7286 9672 1.768870 AGTGAACTAGGTGGTGTGCTT 59.231 47.619 0.00 0.00 0.00 3.91
7404 9790 5.625150 AGAGAAAAAGTACCACAGCTGAAT 58.375 37.500 23.35 7.56 0.00 2.57
7441 9827 3.449746 TTCCGGTTCTCCAATTTCCAT 57.550 42.857 0.00 0.00 0.00 3.41
7533 9919 4.284490 TGCAGTCAAGTTCTGATTCTAGGT 59.716 41.667 0.00 0.00 36.14 3.08
7648 10085 4.569943 GGAGAAACTACAGATGCAACAGA 58.430 43.478 0.00 0.00 0.00 3.41
7773 10210 2.189521 GTACCGGGCATGTGGAGG 59.810 66.667 6.32 3.05 0.00 4.30
7862 10299 4.319177 CGAAAGAAGGTGAAGGAATCAGT 58.681 43.478 0.00 0.00 39.19 3.41
7981 10418 3.496130 CCAGCAGAAAGTGTAGACAGTTG 59.504 47.826 3.54 0.00 39.29 3.16
8016 10453 0.403655 TGACCCAGGCAATAACAGCA 59.596 50.000 0.00 0.00 0.00 4.41
8019 10456 0.527565 CCCAGGCAATAACAGCACAC 59.472 55.000 0.00 0.00 0.00 3.82
8023 10460 1.202927 AGGCAATAACAGCACACCAGT 60.203 47.619 0.00 0.00 0.00 4.00
8037 10474 4.641396 CACACCAGTTTCATCTAGTTCCA 58.359 43.478 0.00 0.00 0.00 3.53
8057 10494 8.380099 AGTTCCATACATAAGAAGGTAACAACA 58.620 33.333 0.00 0.00 41.41 3.33
8096 10534 8.099364 CACTGGACATCTATTTTTACAGTGTT 57.901 34.615 0.00 0.00 45.57 3.32
8097 10535 9.214957 CACTGGACATCTATTTTTACAGTGTTA 57.785 33.333 0.00 0.00 45.57 2.41
8103 10541 9.975218 ACATCTATTTTTACAGTGTTATTCCCT 57.025 29.630 0.00 0.00 0.00 4.20
8106 10544 9.667107 TCTATTTTTACAGTGTTATTCCCTCTG 57.333 33.333 0.00 0.00 0.00 3.35
8107 10545 7.703058 ATTTTTACAGTGTTATTCCCTCTGG 57.297 36.000 0.00 0.00 0.00 3.86
8108 10546 2.789409 ACAGTGTTATTCCCTCTGGC 57.211 50.000 0.00 0.00 0.00 4.85
8109 10547 2.269940 ACAGTGTTATTCCCTCTGGCT 58.730 47.619 0.00 0.00 0.00 4.75
8110 10548 2.026822 ACAGTGTTATTCCCTCTGGCTG 60.027 50.000 0.00 0.00 0.00 4.85
8112 10550 2.912956 AGTGTTATTCCCTCTGGCTGAA 59.087 45.455 0.00 0.00 0.00 3.02
8113 10551 3.525199 AGTGTTATTCCCTCTGGCTGAAT 59.475 43.478 0.00 0.00 33.54 2.57
8115 10553 4.706962 GTGTTATTCCCTCTGGCTGAATTT 59.293 41.667 0.00 0.00 31.55 1.82
8117 10555 5.196695 GTTATTCCCTCTGGCTGAATTTCT 58.803 41.667 0.00 0.00 31.55 2.52
8119 10557 2.269023 TCCCTCTGGCTGAATTTCTGA 58.731 47.619 7.40 0.00 0.00 3.27
8120 10558 2.644299 TCCCTCTGGCTGAATTTCTGAA 59.356 45.455 7.40 0.00 0.00 3.02
8121 10559 3.267812 TCCCTCTGGCTGAATTTCTGAAT 59.732 43.478 7.40 0.00 0.00 2.57
8123 10561 4.578105 CCCTCTGGCTGAATTTCTGAATAC 59.422 45.833 7.40 0.00 0.00 1.89
8124 10562 5.188434 CCTCTGGCTGAATTTCTGAATACA 58.812 41.667 7.40 0.63 0.00 2.29
8125 10563 5.649395 CCTCTGGCTGAATTTCTGAATACAA 59.351 40.000 7.40 0.00 0.00 2.41
8126 10564 6.404074 CCTCTGGCTGAATTTCTGAATACAAC 60.404 42.308 7.40 0.00 0.00 3.32
8127 10565 6.240894 TCTGGCTGAATTTCTGAATACAACT 58.759 36.000 7.40 0.00 0.00 3.16
8128 10566 7.394016 TCTGGCTGAATTTCTGAATACAACTA 58.606 34.615 7.40 0.00 0.00 2.24
8129 10567 8.049117 TCTGGCTGAATTTCTGAATACAACTAT 58.951 33.333 7.40 0.00 0.00 2.12
8130 10568 7.988737 TGGCTGAATTTCTGAATACAACTATG 58.011 34.615 7.40 0.00 0.00 2.23
8131 10569 7.828717 TGGCTGAATTTCTGAATACAACTATGA 59.171 33.333 7.40 0.00 0.00 2.15
8132 10570 8.341173 GGCTGAATTTCTGAATACAACTATGAG 58.659 37.037 7.40 0.00 0.00 2.90
8133 10571 8.341173 GCTGAATTTCTGAATACAACTATGAGG 58.659 37.037 7.40 0.00 0.00 3.86
8134 10572 9.388506 CTGAATTTCTGAATACAACTATGAGGT 57.611 33.333 0.00 0.00 0.00 3.85
8135 10573 9.166173 TGAATTTCTGAATACAACTATGAGGTG 57.834 33.333 0.00 0.00 39.30 4.00
8137 10575 9.520515 AATTTCTGAATACAACTATGAGGTGTT 57.479 29.630 1.90 0.00 45.36 3.32
8138 10576 7.905604 TTCTGAATACAACTATGAGGTGTTG 57.094 36.000 1.90 0.00 45.36 3.33
8139 10577 5.874810 TCTGAATACAACTATGAGGTGTTGC 59.125 40.000 1.90 0.00 45.36 4.17
8140 10578 5.555966 TGAATACAACTATGAGGTGTTGCA 58.444 37.500 1.90 0.00 45.36 4.08
8141 10579 6.179756 TGAATACAACTATGAGGTGTTGCAT 58.820 36.000 1.90 0.00 45.36 3.96
8142 10580 6.093909 TGAATACAACTATGAGGTGTTGCATG 59.906 38.462 1.90 0.00 45.36 4.06
8143 10581 3.084039 ACAACTATGAGGTGTTGCATGG 58.916 45.455 5.86 0.00 45.36 3.66
8144 10582 3.244875 ACAACTATGAGGTGTTGCATGGA 60.245 43.478 5.86 0.00 45.36 3.41
8145 10583 3.272574 ACTATGAGGTGTTGCATGGAG 57.727 47.619 0.00 0.00 0.00 3.86
8146 10584 2.092753 ACTATGAGGTGTTGCATGGAGG 60.093 50.000 0.00 0.00 0.00 4.30
8147 10585 0.682209 ATGAGGTGTTGCATGGAGGC 60.682 55.000 0.00 0.00 0.00 4.70
8148 10586 2.360350 AGGTGTTGCATGGAGGCG 60.360 61.111 0.00 0.00 36.28 5.52
8149 10587 2.672996 GGTGTTGCATGGAGGCGT 60.673 61.111 0.00 0.00 36.28 5.68
8150 10588 2.562912 GTGTTGCATGGAGGCGTG 59.437 61.111 0.00 0.00 36.28 5.34
8151 10589 2.112928 TGTTGCATGGAGGCGTGT 59.887 55.556 0.00 0.00 36.28 4.49
8152 10590 1.528076 TGTTGCATGGAGGCGTGTT 60.528 52.632 0.00 0.00 36.28 3.32
8153 10591 0.250510 TGTTGCATGGAGGCGTGTTA 60.251 50.000 0.00 0.00 36.28 2.41
8154 10592 0.168128 GTTGCATGGAGGCGTGTTAC 59.832 55.000 0.00 0.00 36.28 2.50
8155 10593 0.250510 TTGCATGGAGGCGTGTTACA 60.251 50.000 0.00 0.00 36.28 2.41
8156 10594 0.035534 TGCATGGAGGCGTGTTACAT 60.036 50.000 0.00 0.00 36.28 2.29
8157 10595 1.208293 TGCATGGAGGCGTGTTACATA 59.792 47.619 0.00 0.00 36.28 2.29
8158 10596 2.158827 TGCATGGAGGCGTGTTACATAT 60.159 45.455 0.00 0.00 36.28 1.78
8159 10597 2.224079 GCATGGAGGCGTGTTACATATG 59.776 50.000 0.00 0.00 0.00 1.78
8160 10598 3.466836 CATGGAGGCGTGTTACATATGT 58.533 45.455 13.93 13.93 0.00 2.29
8161 10599 4.627058 CATGGAGGCGTGTTACATATGTA 58.373 43.478 11.62 11.62 0.00 2.29
8162 10600 4.049546 TGGAGGCGTGTTACATATGTAC 57.950 45.455 15.20 10.87 0.00 2.90
8163 10601 3.047796 GGAGGCGTGTTACATATGTACG 58.952 50.000 20.28 20.28 0.00 3.67
8164 10602 2.466846 AGGCGTGTTACATATGTACGC 58.533 47.619 32.04 32.04 40.49 4.42
8165 10603 2.916735 GCGTGTTACATATGTACGCC 57.083 50.000 30.75 19.05 37.48 5.68
8166 10604 1.523934 GCGTGTTACATATGTACGCCC 59.476 52.381 30.75 15.79 37.48 6.13
8167 10605 2.129607 CGTGTTACATATGTACGCCCC 58.870 52.381 15.20 2.63 0.00 5.80
8168 10606 2.223876 CGTGTTACATATGTACGCCCCT 60.224 50.000 15.20 0.00 0.00 4.79
8169 10607 3.738899 CGTGTTACATATGTACGCCCCTT 60.739 47.826 15.20 0.00 0.00 3.95
8170 10608 3.805971 GTGTTACATATGTACGCCCCTTC 59.194 47.826 15.20 0.82 0.00 3.46
8171 10609 3.707611 TGTTACATATGTACGCCCCTTCT 59.292 43.478 15.20 0.00 0.00 2.85
8172 10610 2.910688 ACATATGTACGCCCCTTCTG 57.089 50.000 6.56 0.00 0.00 3.02
8173 10611 2.394632 ACATATGTACGCCCCTTCTGA 58.605 47.619 6.56 0.00 0.00 3.27
8174 10612 2.365617 ACATATGTACGCCCCTTCTGAG 59.634 50.000 6.56 0.00 0.00 3.35
8187 10625 2.350197 CCTTCTGAGCTGCTTTGTTTCG 60.350 50.000 2.53 0.00 0.00 3.46
8188 10626 2.238942 TCTGAGCTGCTTTGTTTCGA 57.761 45.000 2.53 0.00 0.00 3.71
8190 10628 1.599071 CTGAGCTGCTTTGTTTCGACA 59.401 47.619 2.53 0.00 0.00 4.35
8386 10824 2.095532 GCTTGCTCTGCAGTATGTTGAG 59.904 50.000 14.67 2.86 40.61 3.02
8389 10827 1.676916 GCTCTGCAGTATGTTGAGGCA 60.677 52.381 14.67 0.00 37.78 4.75
8390 10828 2.703416 CTCTGCAGTATGTTGAGGCAA 58.297 47.619 14.67 0.00 39.31 4.52
8416 10854 2.413371 GCAAAAGATCAGTTGACTCGGC 60.413 50.000 11.43 0.00 0.00 5.54
8417 10855 1.714794 AAAGATCAGTTGACTCGGCG 58.285 50.000 0.00 0.00 0.00 6.46
8432 10871 0.868406 CGGCGAAAATCTGGCTATCC 59.132 55.000 0.00 0.00 0.00 2.59
8528 10967 2.746279 TTCAGGCAGACCCTCAAAAA 57.254 45.000 0.00 0.00 44.09 1.94
8543 10982 7.661968 ACCCTCAAAAAGAGCTTTAATTCTTC 58.338 34.615 0.00 0.00 43.31 2.87
8564 11004 2.106683 GCTTTGGTCGTGGATCGGG 61.107 63.158 0.00 0.00 40.32 5.14
8569 11009 0.108963 TGGTCGTGGATCGGGTTTTT 59.891 50.000 0.00 0.00 40.32 1.94
8599 11039 9.689501 AAGTAGACCAAATTTTATAATCCGGAA 57.310 29.630 9.01 0.00 0.00 4.30
8723 11167 1.724582 GAGCGTGGGTTTGCAACTGT 61.725 55.000 0.00 0.00 0.00 3.55
8726 11170 1.000717 GCGTGGGTTTGCAACTGTTAT 60.001 47.619 0.00 0.00 0.00 1.89
8741 11185 4.323417 ACTGTTATGGAAATTCAGTGCGA 58.677 39.130 0.00 0.00 37.85 5.10
8744 11188 2.198827 ATGGAAATTCAGTGCGACCA 57.801 45.000 0.00 0.00 0.00 4.02
8776 11220 6.152323 TGGTTTCTCCACTGATGTAGTAGTAC 59.848 42.308 0.37 0.37 41.93 2.73
8804 11248 9.877178 ATGTAACACCTGAAAACAACAATTTAA 57.123 25.926 0.00 0.00 0.00 1.52
8808 11252 5.047188 ACCTGAAAACAACAATTTAAGGCG 58.953 37.500 2.87 0.00 32.46 5.52
8811 11255 2.058913 AACAACAATTTAAGGCGGCG 57.941 45.000 0.51 0.51 0.00 6.46
9025 11469 2.429610 TGCTCGGGTATGAAGTAGTTCC 59.570 50.000 7.84 0.00 0.00 3.62
9117 11561 1.728426 GTAGCACGCGTCGAACACT 60.728 57.895 9.86 2.56 0.00 3.55
9120 11564 2.837280 CACGCGTCGAACACTGAC 59.163 61.111 9.86 0.00 0.00 3.51
9239 11683 4.394712 GCCCGAGTCCACCACCAG 62.395 72.222 0.00 0.00 0.00 4.00
9277 11721 2.270527 GGTCCAAGGAGAGGCTGC 59.729 66.667 0.00 0.00 0.00 5.25
9283 11727 2.969162 AAGGAGAGGCTGCAGCTGG 61.969 63.158 35.82 1.85 41.70 4.85
9288 11732 1.449956 GAGGCTGCAGCTGGAGAAG 60.450 63.158 36.18 13.88 41.70 2.85
9300 11744 4.097361 GAGAAGCCCCCGGTGACC 62.097 72.222 0.00 0.00 0.00 4.02
9391 11835 4.947147 GGGTGAAGGCCGTGCACA 62.947 66.667 18.64 7.03 34.33 4.57
9427 11871 2.413765 CGAAGGCGAGGTAGGAGC 59.586 66.667 0.00 0.00 40.82 4.70
9861 12305 2.102357 CTCCCGGTGTCGATGACG 59.898 66.667 0.00 0.00 39.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 3.321111 TCTTCTTGGCTAGAACACGAAGT 59.679 43.478 22.05 0.00 41.90 3.01
240 253 3.769300 AGACCCAAAAGCAAAGAAGTTGT 59.231 39.130 0.00 0.00 39.63 3.32
243 256 3.365472 ACAGACCCAAAAGCAAAGAAGT 58.635 40.909 0.00 0.00 0.00 3.01
330 382 4.280819 CACCAACAAATACCATCCCATCT 58.719 43.478 0.00 0.00 0.00 2.90
474 568 2.385013 TGTGATATGCGTTGCAGTCT 57.615 45.000 0.00 0.00 43.65 3.24
514 609 3.434984 GTGCAGATCGAAAAGCTTCTCTT 59.565 43.478 0.00 0.00 36.34 2.85
650 2505 4.227300 ACTTGGGTTGATGTAGCCAGATTA 59.773 41.667 0.00 0.00 45.61 1.75
698 2553 8.575649 AGAACATCGATTTATTTTAGTTGGGT 57.424 30.769 0.00 0.00 0.00 4.51
752 3073 4.140599 CGCTCGCTGCCTTCCTCT 62.141 66.667 0.00 0.00 38.78 3.69
773 3094 0.602905 CGGTTCGTTCCTTTCCAGCT 60.603 55.000 0.00 0.00 0.00 4.24
992 3313 7.279313 TCCTGACCGTTGCTTATAATTAGTTTC 59.721 37.037 0.00 0.00 0.00 2.78
1082 3404 0.546747 TGGACTTGGGTCGGGAATCT 60.547 55.000 0.00 0.00 42.97 2.40
1393 3721 7.094549 CGATACAAATTGGGGAAACTTGAACTA 60.095 37.037 0.00 0.00 0.00 2.24
1420 3748 1.066303 CGAGAGGTGGATGCAGTCTAC 59.934 57.143 0.00 0.00 37.58 2.59
1574 3911 2.192608 CTTCCAGCGCTTCACTTGGC 62.193 60.000 7.50 0.00 0.00 4.52
1577 3914 0.681733 TCTCTTCCAGCGCTTCACTT 59.318 50.000 7.50 0.00 0.00 3.16
1603 3940 1.916181 AGAAGGGACACAATACCAGGG 59.084 52.381 0.00 0.00 0.00 4.45
1614 3951 1.048601 AGAGCGAAACAGAAGGGACA 58.951 50.000 0.00 0.00 0.00 4.02
1627 3965 2.846193 AGGTTTTTAGCACAAGAGCGA 58.154 42.857 0.00 0.00 40.15 4.93
1630 3968 6.619801 ACACTTAGGTTTTTAGCACAAGAG 57.380 37.500 0.00 0.00 0.00 2.85
1647 3985 6.952773 AAGAAATACACCAGCAAACACTTA 57.047 33.333 0.00 0.00 0.00 2.24
1648 3986 5.852282 AAGAAATACACCAGCAAACACTT 57.148 34.783 0.00 0.00 0.00 3.16
1653 3991 5.060506 TCGAGAAAGAAATACACCAGCAAA 58.939 37.500 0.00 0.00 0.00 3.68
1659 3997 6.956047 ACTTGTTTCGAGAAAGAAATACACC 58.044 36.000 9.00 0.00 41.46 4.16
1660 3998 8.762426 AGTACTTGTTTCGAGAAAGAAATACAC 58.238 33.333 20.77 11.67 38.14 2.90
1661 3999 8.882415 AGTACTTGTTTCGAGAAAGAAATACA 57.118 30.769 20.77 5.98 38.14 2.29
1662 4000 9.582223 CAAGTACTTGTTTCGAGAAAGAAATAC 57.418 33.333 24.70 14.84 41.46 1.89
1664 4002 7.012421 AGCAAGTACTTGTTTCGAGAAAGAAAT 59.988 33.333 30.90 2.87 41.46 2.17
1665 4003 6.315393 AGCAAGTACTTGTTTCGAGAAAGAAA 59.685 34.615 30.90 2.71 42.31 2.52
1667 4005 5.234329 CAGCAAGTACTTGTTTCGAGAAAGA 59.766 40.000 30.90 0.00 42.31 2.52
1668 4006 5.435557 CAGCAAGTACTTGTTTCGAGAAAG 58.564 41.667 30.90 11.48 42.31 2.62
1700 4039 4.080299 GTGTCCCTTTCCCTCAACTCATAT 60.080 45.833 0.00 0.00 0.00 1.78
1701 4040 3.263425 GTGTCCCTTTCCCTCAACTCATA 59.737 47.826 0.00 0.00 0.00 2.15
1716 4055 9.614792 GTTAGAACATCTTATATTTGTGTCCCT 57.385 33.333 0.00 0.00 0.00 4.20
1746 4085 8.593679 ACATGTCTATATACATCGGATCCAAAA 58.406 33.333 13.41 0.00 38.01 2.44
1748 4087 7.718334 ACATGTCTATATACATCGGATCCAA 57.282 36.000 13.41 0.00 38.01 3.53
1753 4092 9.908152 CACTAAAACATGTCTATATACATCGGA 57.092 33.333 0.00 0.00 38.01 4.55
1754 4093 9.692749 ACACTAAAACATGTCTATATACATCGG 57.307 33.333 0.00 0.00 38.01 4.18
1763 4102 8.898761 TGAACAAACACACTAAAACATGTCTAT 58.101 29.630 0.00 0.00 0.00 1.98
1764 4103 8.178964 GTGAACAAACACACTAAAACATGTCTA 58.821 33.333 0.00 0.00 40.11 2.59
1765 4104 7.027161 GTGAACAAACACACTAAAACATGTCT 58.973 34.615 0.00 0.00 40.11 3.41
1766 4105 7.027161 AGTGAACAAACACACTAAAACATGTC 58.973 34.615 0.00 0.00 44.06 3.06
1767 4106 6.919721 AGTGAACAAACACACTAAAACATGT 58.080 32.000 0.00 0.00 44.06 3.21
1768 4107 7.026562 TGAGTGAACAAACACACTAAAACATG 58.973 34.615 0.00 0.00 45.54 3.21
1769 4108 7.151999 TGAGTGAACAAACACACTAAAACAT 57.848 32.000 0.00 0.00 45.54 2.71
1770 4109 6.561737 TGAGTGAACAAACACACTAAAACA 57.438 33.333 0.00 0.00 45.54 2.83
1771 4110 8.460831 AAATGAGTGAACAAACACACTAAAAC 57.539 30.769 0.00 0.00 45.54 2.43
1772 4111 8.300286 TGAAATGAGTGAACAAACACACTAAAA 58.700 29.630 0.00 0.00 45.54 1.52
1773 4112 7.821652 TGAAATGAGTGAACAAACACACTAAA 58.178 30.769 0.00 0.00 45.54 1.85
1774 4113 7.120579 ACTGAAATGAGTGAACAAACACACTAA 59.879 33.333 0.00 0.00 45.54 2.24
1775 4114 6.597672 ACTGAAATGAGTGAACAAACACACTA 59.402 34.615 0.00 0.00 45.54 2.74
1777 4116 5.640732 ACTGAAATGAGTGAACAAACACAC 58.359 37.500 0.00 0.00 42.45 3.82
1778 4117 5.163663 GGACTGAAATGAGTGAACAAACACA 60.164 40.000 0.00 0.00 42.45 3.72
1779 4118 5.273944 GGACTGAAATGAGTGAACAAACAC 58.726 41.667 0.00 0.00 40.60 3.32
1780 4119 4.035091 CGGACTGAAATGAGTGAACAAACA 59.965 41.667 0.00 0.00 0.00 2.83
1781 4120 4.035208 ACGGACTGAAATGAGTGAACAAAC 59.965 41.667 0.00 0.00 0.00 2.93
1782 4121 4.196193 ACGGACTGAAATGAGTGAACAAA 58.804 39.130 0.00 0.00 0.00 2.83
1783 4122 3.804036 ACGGACTGAAATGAGTGAACAA 58.196 40.909 0.00 0.00 0.00 2.83
1784 4123 3.469008 ACGGACTGAAATGAGTGAACA 57.531 42.857 0.00 0.00 0.00 3.18
1785 4124 4.929808 ACATACGGACTGAAATGAGTGAAC 59.070 41.667 7.93 0.00 0.00 3.18
1786 4125 5.147330 ACATACGGACTGAAATGAGTGAA 57.853 39.130 7.93 0.00 0.00 3.18
1787 4126 4.801330 ACATACGGACTGAAATGAGTGA 57.199 40.909 7.93 0.00 0.00 3.41
1788 4127 5.651530 ACTACATACGGACTGAAATGAGTG 58.348 41.667 7.93 0.00 0.00 3.51
1789 4128 5.163540 GGACTACATACGGACTGAAATGAGT 60.164 44.000 7.93 7.04 0.00 3.41
1790 4129 5.163550 TGGACTACATACGGACTGAAATGAG 60.164 44.000 7.93 4.83 0.00 2.90
1791 4130 4.707934 TGGACTACATACGGACTGAAATGA 59.292 41.667 7.93 0.00 0.00 2.57
1792 4131 5.006153 TGGACTACATACGGACTGAAATG 57.994 43.478 0.00 0.00 0.00 2.32
1793 4132 5.871396 ATGGACTACATACGGACTGAAAT 57.129 39.130 0.00 0.00 38.26 2.17
1794 4133 6.971726 ATATGGACTACATACGGACTGAAA 57.028 37.500 0.00 0.00 44.41 2.69
1795 4134 6.548251 TCAATATGGACTACATACGGACTGAA 59.452 38.462 0.00 0.00 44.41 3.02
1796 4135 6.066032 TCAATATGGACTACATACGGACTGA 58.934 40.000 0.00 0.00 44.41 3.41
1797 4136 6.327279 TCAATATGGACTACATACGGACTG 57.673 41.667 0.00 0.00 44.41 3.51
1798 4137 6.971726 TTCAATATGGACTACATACGGACT 57.028 37.500 0.00 0.00 44.41 3.85
1799 4138 9.871238 ATATTTCAATATGGACTACATACGGAC 57.129 33.333 0.00 0.00 44.41 4.79
1801 4140 9.314321 GGATATTTCAATATGGACTACATACGG 57.686 37.037 0.00 0.00 44.41 4.02
1802 4141 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
1824 4163 9.787532 CGTTCACAAATATAAGATGTTTTGGAT 57.212 29.630 0.00 0.00 34.23 3.41
1825 4164 8.240682 CCGTTCACAAATATAAGATGTTTTGGA 58.759 33.333 0.00 0.00 34.23 3.53
1826 4165 8.240682 TCCGTTCACAAATATAAGATGTTTTGG 58.759 33.333 0.00 0.00 34.23 3.28
1827 4166 9.277565 CTCCGTTCACAAATATAAGATGTTTTG 57.722 33.333 0.00 0.00 35.66 2.44
1828 4167 8.458843 CCTCCGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
1829 4168 7.067008 CCCTCCGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
1830 4169 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
1831 4170 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
1832 4171 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
1833 4172 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
1834 4173 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
1835 4174 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
1836 4175 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
1837 4176 5.895534 ACTACTCCCTCCGTTCACAAATATA 59.104 40.000 0.00 0.00 0.00 0.86
1838 4177 4.715297 ACTACTCCCTCCGTTCACAAATAT 59.285 41.667 0.00 0.00 0.00 1.28
1839 4178 4.091549 ACTACTCCCTCCGTTCACAAATA 58.908 43.478 0.00 0.00 0.00 1.40
1840 4179 2.904434 ACTACTCCCTCCGTTCACAAAT 59.096 45.455 0.00 0.00 0.00 2.32
1841 4180 2.322658 ACTACTCCCTCCGTTCACAAA 58.677 47.619 0.00 0.00 0.00 2.83
1842 4181 2.005370 ACTACTCCCTCCGTTCACAA 57.995 50.000 0.00 0.00 0.00 3.33
1843 4182 2.005370 AACTACTCCCTCCGTTCACA 57.995 50.000 0.00 0.00 0.00 3.58
1844 4183 2.561858 AGAAACTACTCCCTCCGTTCAC 59.438 50.000 0.00 0.00 0.00 3.18
1845 4184 2.885616 AGAAACTACTCCCTCCGTTCA 58.114 47.619 0.00 0.00 0.00 3.18
1846 4185 4.673841 CGTTAGAAACTACTCCCTCCGTTC 60.674 50.000 0.00 0.00 0.00 3.95
1847 4186 3.192212 CGTTAGAAACTACTCCCTCCGTT 59.808 47.826 0.00 0.00 0.00 4.44
1848 4187 2.751806 CGTTAGAAACTACTCCCTCCGT 59.248 50.000 0.00 0.00 0.00 4.69
1849 4188 3.012518 TCGTTAGAAACTACTCCCTCCG 58.987 50.000 0.00 0.00 0.00 4.63
1850 4189 5.595257 AATCGTTAGAAACTACTCCCTCC 57.405 43.478 0.00 0.00 0.00 4.30
1851 4190 9.597170 AAAATAATCGTTAGAAACTACTCCCTC 57.403 33.333 0.00 0.00 0.00 4.30
1852 4191 9.379791 CAAAATAATCGTTAGAAACTACTCCCT 57.620 33.333 0.00 0.00 0.00 4.20
1853 4192 9.159364 ACAAAATAATCGTTAGAAACTACTCCC 57.841 33.333 0.00 0.00 0.00 4.30
1854 4193 9.968743 CACAAAATAATCGTTAGAAACTACTCC 57.031 33.333 0.00 0.00 0.00 3.85
1863 4202 7.279981 CAGACCATCCACAAAATAATCGTTAGA 59.720 37.037 0.00 0.00 0.00 2.10
1877 4216 1.003839 GGCGAACAGACCATCCACA 60.004 57.895 0.00 0.00 0.00 4.17
1920 4259 8.916062 TGTGTAACCATACGAGGATATCTTTAA 58.084 33.333 2.05 0.00 34.60 1.52
1929 4268 2.426024 GAGCTGTGTAACCATACGAGGA 59.574 50.000 0.00 0.00 34.60 3.71
1930 4269 2.427453 AGAGCTGTGTAACCATACGAGG 59.573 50.000 0.00 0.00 34.60 4.63
1931 4270 3.784701 AGAGCTGTGTAACCATACGAG 57.215 47.619 0.00 0.00 34.60 4.18
1934 4274 5.073311 TGAGAAGAGCTGTGTAACCATAC 57.927 43.478 0.00 0.00 34.36 2.39
1965 4305 3.441572 GCAGTGCTTTCACATGTATTCCT 59.558 43.478 8.18 0.00 45.49 3.36
1966 4306 3.428045 GGCAGTGCTTTCACATGTATTCC 60.428 47.826 16.11 0.00 45.49 3.01
1971 4311 0.956633 CAGGCAGTGCTTTCACATGT 59.043 50.000 16.11 0.00 45.49 3.21
1972 4312 3.786809 CAGGCAGTGCTTTCACATG 57.213 52.632 16.11 0.00 45.49 3.21
1994 4359 7.543172 CCATAATTCAAAAGGTTCATCACTGTG 59.457 37.037 0.17 0.17 0.00 3.66
1996 4361 7.037438 CCCATAATTCAAAAGGTTCATCACTG 58.963 38.462 0.00 0.00 0.00 3.66
2002 4367 6.553100 ACAGTTCCCATAATTCAAAAGGTTCA 59.447 34.615 0.00 0.00 0.00 3.18
2057 4422 4.579869 AGTTAGTGTGGATTGTCATCACC 58.420 43.478 0.00 0.00 0.00 4.02
2078 4443 2.896168 CATTTGCATACCCAGCCAAAG 58.104 47.619 0.00 0.00 0.00 2.77
2118 4483 1.604604 AATGGCAAGCACGTGTAACT 58.395 45.000 18.38 2.52 31.75 2.24
2123 4488 1.603802 CCCTATAATGGCAAGCACGTG 59.396 52.381 12.28 12.28 0.00 4.49
2497 4864 1.341852 TGACACTACGCAGGTTTAGCA 59.658 47.619 0.00 0.00 0.00 3.49
2718 5086 7.870445 GTGCAGAAATTAATTCCAAAGGTGTTA 59.130 33.333 0.10 0.00 38.94 2.41
2734 5102 9.598517 TTTTTAACTTCTTCATGTGCAGAAATT 57.401 25.926 0.00 0.00 27.63 1.82
2787 5155 9.317936 GAGACTGTGAACATTGATACAATATCA 57.682 33.333 0.00 0.00 0.00 2.15
4226 6602 5.931532 TCTGACTCATTTTTCGCTTCAATC 58.068 37.500 0.00 0.00 0.00 2.67
4569 6945 0.881118 GAAGAAACCATGCGAGCCAA 59.119 50.000 0.00 0.00 0.00 4.52
4667 7043 7.118680 GGTACTTCCGACTGTTCATTTGAAATA 59.881 37.037 0.00 0.00 35.58 1.40
4673 7049 4.062991 GTGGTACTTCCGACTGTTCATTT 58.937 43.478 0.00 0.00 39.52 2.32
4956 7332 3.074412 AGGTGCAACTAACACAGCATAC 58.926 45.455 0.00 0.00 39.87 2.39
5997 8382 1.827969 CTTCGTCTCCTTCCTGTGGAT 59.172 52.381 0.00 0.00 32.56 3.41
6124 8509 2.748605 CGTGCCAGTATCTGAGGATTC 58.251 52.381 0.00 0.00 32.44 2.52
6162 8547 3.636764 TGGACAAAAAGGCTTTCTTCTCC 59.363 43.478 13.76 14.88 33.94 3.71
6363 8748 6.822506 GGTCGAAGAACTCAATACTTTTCTG 58.177 40.000 0.00 0.00 43.75 3.02
6436 8821 6.346838 GCAGATTGGTTTTGTTTATTCTGTGC 60.347 38.462 0.00 0.00 33.57 4.57
6558 8943 1.846007 AGTTCCTGCTGAGATCGTCT 58.154 50.000 0.00 0.00 0.00 4.18
6693 9078 2.281070 AGTTGTGAGCTGTGGCCG 60.281 61.111 0.00 0.00 39.73 6.13
6734 9119 8.265055 CCCTTAATGATTACCTGTCTAACTGAA 58.735 37.037 0.00 0.00 0.00 3.02
6849 9234 7.411274 CGTTGAACAAGAAAAATACAGGTACA 58.589 34.615 0.00 0.00 0.00 2.90
6980 9366 2.292569 AGCATCAGCAATAGCCAATTCG 59.707 45.455 0.00 0.00 45.49 3.34
7192 9578 6.651225 GTCTAAAGCTTCTTCCACATTACTGT 59.349 38.462 0.00 0.00 35.44 3.55
7286 9672 2.168326 TTTCACTCGCATTCTGCTCA 57.832 45.000 0.00 0.00 42.25 4.26
7404 9790 3.558321 CCGGAAACTGTCCTGGAATTACA 60.558 47.826 0.00 0.00 45.36 2.41
7466 9852 9.444600 GAGTCCAAATTTACCAAGTAAGTATCA 57.555 33.333 0.00 0.00 29.41 2.15
7773 10210 7.805071 CACTGTTATGTCCATTTCTTTTGAGTC 59.195 37.037 0.00 0.00 0.00 3.36
7862 10299 1.141657 AGCTCCAGTTTCACTGCTTGA 59.858 47.619 0.00 0.00 44.63 3.02
7882 10319 4.022242 CACTGGAAGACTTCTCTTTACCGA 60.022 45.833 14.72 0.00 36.82 4.69
7981 10418 1.239347 GTCAGGTGCTGGTTTCTTCC 58.761 55.000 0.00 0.00 31.51 3.46
8016 10453 4.974645 TGGAACTAGATGAAACTGGTGT 57.025 40.909 0.00 0.00 32.26 4.16
8019 10456 9.265901 CTTATGTATGGAACTAGATGAAACTGG 57.734 37.037 0.00 0.00 0.00 4.00
8037 10474 8.999431 CAAGTGTGTTGTTACCTTCTTATGTAT 58.001 33.333 0.00 0.00 0.00 2.29
8057 10494 3.135712 TGTCCAGTGGAACATACAAGTGT 59.864 43.478 15.09 0.00 44.52 3.55
8096 10534 4.474651 TCAGAAATTCAGCCAGAGGGAATA 59.525 41.667 0.00 0.00 35.59 1.75
8097 10535 3.267812 TCAGAAATTCAGCCAGAGGGAAT 59.732 43.478 0.00 0.00 35.59 3.01
8099 10537 2.269023 TCAGAAATTCAGCCAGAGGGA 58.731 47.619 0.00 0.00 35.59 4.20
8100 10538 2.795231 TCAGAAATTCAGCCAGAGGG 57.205 50.000 0.00 0.00 37.18 4.30
8102 10540 6.373774 AGTTGTATTCAGAAATTCAGCCAGAG 59.626 38.462 0.00 0.00 28.05 3.35
8103 10541 6.240894 AGTTGTATTCAGAAATTCAGCCAGA 58.759 36.000 0.00 0.00 28.05 3.86
8104 10542 6.506500 AGTTGTATTCAGAAATTCAGCCAG 57.493 37.500 0.00 0.00 28.05 4.85
8106 10544 8.213518 TCATAGTTGTATTCAGAAATTCAGCC 57.786 34.615 0.00 0.00 28.05 4.85
8107 10545 8.341173 CCTCATAGTTGTATTCAGAAATTCAGC 58.659 37.037 0.00 0.00 0.00 4.26
8108 10546 9.388506 ACCTCATAGTTGTATTCAGAAATTCAG 57.611 33.333 0.00 0.00 0.00 3.02
8109 10547 9.166173 CACCTCATAGTTGTATTCAGAAATTCA 57.834 33.333 0.00 0.00 0.00 2.57
8110 10548 9.167311 ACACCTCATAGTTGTATTCAGAAATTC 57.833 33.333 0.00 0.00 0.00 2.17
8112 10550 8.950210 CAACACCTCATAGTTGTATTCAGAAAT 58.050 33.333 0.00 0.00 40.06 2.17
8113 10551 7.094805 GCAACACCTCATAGTTGTATTCAGAAA 60.095 37.037 7.08 0.00 45.16 2.52
8115 10553 5.874810 GCAACACCTCATAGTTGTATTCAGA 59.125 40.000 7.08 0.00 45.16 3.27
8117 10555 5.555966 TGCAACACCTCATAGTTGTATTCA 58.444 37.500 7.08 0.00 45.16 2.57
8119 10557 5.357878 CCATGCAACACCTCATAGTTGTATT 59.642 40.000 6.22 0.00 44.78 1.89
8120 10558 4.883585 CCATGCAACACCTCATAGTTGTAT 59.116 41.667 0.00 5.33 46.92 2.29
8121 10559 4.019771 TCCATGCAACACCTCATAGTTGTA 60.020 41.667 0.00 3.24 45.16 2.41
8123 10561 3.346315 TCCATGCAACACCTCATAGTTG 58.654 45.455 0.00 0.00 45.91 3.16
8124 10562 3.614092 CTCCATGCAACACCTCATAGTT 58.386 45.455 0.00 0.00 0.00 2.24
8125 10563 2.092753 CCTCCATGCAACACCTCATAGT 60.093 50.000 0.00 0.00 0.00 2.12
8126 10564 2.569059 CCTCCATGCAACACCTCATAG 58.431 52.381 0.00 0.00 0.00 2.23
8127 10565 1.408683 GCCTCCATGCAACACCTCATA 60.409 52.381 0.00 0.00 0.00 2.15
8128 10566 0.682209 GCCTCCATGCAACACCTCAT 60.682 55.000 0.00 0.00 0.00 2.90
8129 10567 1.303561 GCCTCCATGCAACACCTCA 60.304 57.895 0.00 0.00 0.00 3.86
8130 10568 2.401766 CGCCTCCATGCAACACCTC 61.402 63.158 0.00 0.00 0.00 3.85
8131 10569 2.360350 CGCCTCCATGCAACACCT 60.360 61.111 0.00 0.00 0.00 4.00
8132 10570 2.672996 ACGCCTCCATGCAACACC 60.673 61.111 0.00 0.00 0.00 4.16
8133 10571 1.795170 AACACGCCTCCATGCAACAC 61.795 55.000 0.00 0.00 0.00 3.32
8134 10572 0.250510 TAACACGCCTCCATGCAACA 60.251 50.000 0.00 0.00 0.00 3.33
8135 10573 0.168128 GTAACACGCCTCCATGCAAC 59.832 55.000 0.00 0.00 0.00 4.17
8136 10574 0.250510 TGTAACACGCCTCCATGCAA 60.251 50.000 0.00 0.00 0.00 4.08
8137 10575 0.035534 ATGTAACACGCCTCCATGCA 60.036 50.000 0.00 0.00 0.00 3.96
8138 10576 1.948104 TATGTAACACGCCTCCATGC 58.052 50.000 0.00 0.00 0.00 4.06
8139 10577 3.466836 ACATATGTAACACGCCTCCATG 58.533 45.455 6.56 0.00 0.00 3.66
8140 10578 3.838244 ACATATGTAACACGCCTCCAT 57.162 42.857 6.56 0.00 0.00 3.41
8141 10579 3.489568 CGTACATATGTAACACGCCTCCA 60.490 47.826 17.07 0.00 31.52 3.86
8142 10580 3.047796 CGTACATATGTAACACGCCTCC 58.952 50.000 17.07 1.23 31.52 4.30
8143 10581 2.470257 GCGTACATATGTAACACGCCTC 59.530 50.000 30.75 13.65 43.61 4.70
8144 10582 2.466846 GCGTACATATGTAACACGCCT 58.533 47.619 30.75 3.21 43.61 5.52
8145 10583 2.916735 GCGTACATATGTAACACGCC 57.083 50.000 30.75 19.05 43.61 5.68
8146 10584 1.523934 GGGCGTACATATGTAACACGC 59.476 52.381 32.04 32.04 46.62 5.34
8147 10585 2.129607 GGGGCGTACATATGTAACACG 58.870 52.381 20.28 20.28 32.50 4.49
8148 10586 3.464111 AGGGGCGTACATATGTAACAC 57.536 47.619 17.07 12.97 31.52 3.32
8149 10587 3.707611 AGAAGGGGCGTACATATGTAACA 59.292 43.478 17.07 0.00 31.52 2.41
8150 10588 4.056050 CAGAAGGGGCGTACATATGTAAC 58.944 47.826 17.07 12.00 31.52 2.50
8151 10589 3.962063 TCAGAAGGGGCGTACATATGTAA 59.038 43.478 17.07 0.00 31.52 2.41
8152 10590 3.568443 TCAGAAGGGGCGTACATATGTA 58.432 45.455 11.62 11.62 0.00 2.29
8153 10591 2.365617 CTCAGAAGGGGCGTACATATGT 59.634 50.000 13.93 13.93 0.00 2.29
8154 10592 2.868044 GCTCAGAAGGGGCGTACATATG 60.868 54.545 0.00 0.00 0.00 1.78
8155 10593 1.344763 GCTCAGAAGGGGCGTACATAT 59.655 52.381 0.00 0.00 0.00 1.78
8156 10594 0.750850 GCTCAGAAGGGGCGTACATA 59.249 55.000 0.00 0.00 0.00 2.29
8157 10595 0.978146 AGCTCAGAAGGGGCGTACAT 60.978 55.000 0.00 0.00 0.00 2.29
8158 10596 1.609501 AGCTCAGAAGGGGCGTACA 60.610 57.895 0.00 0.00 0.00 2.90
8159 10597 1.153549 CAGCTCAGAAGGGGCGTAC 60.154 63.158 0.00 0.00 0.00 3.67
8160 10598 3.019003 GCAGCTCAGAAGGGGCGTA 62.019 63.158 0.00 0.00 0.00 4.42
8161 10599 4.400961 GCAGCTCAGAAGGGGCGT 62.401 66.667 0.00 0.00 0.00 5.68
8162 10600 3.618780 AAGCAGCTCAGAAGGGGCG 62.619 63.158 0.00 0.00 0.00 6.13
8163 10601 1.303970 AAAGCAGCTCAGAAGGGGC 60.304 57.895 0.00 0.00 0.00 5.80
8164 10602 0.251077 ACAAAGCAGCTCAGAAGGGG 60.251 55.000 0.00 0.00 0.00 4.79
8165 10603 1.613836 AACAAAGCAGCTCAGAAGGG 58.386 50.000 0.00 0.00 0.00 3.95
8166 10604 2.350197 CGAAACAAAGCAGCTCAGAAGG 60.350 50.000 0.00 0.00 0.00 3.46
8167 10605 2.545526 TCGAAACAAAGCAGCTCAGAAG 59.454 45.455 0.00 0.00 0.00 2.85
8168 10606 2.287915 GTCGAAACAAAGCAGCTCAGAA 59.712 45.455 0.00 0.00 0.00 3.02
8169 10607 1.867233 GTCGAAACAAAGCAGCTCAGA 59.133 47.619 0.00 0.00 0.00 3.27
8170 10608 1.599071 TGTCGAAACAAAGCAGCTCAG 59.401 47.619 0.00 0.00 30.70 3.35
8171 10609 1.662517 TGTCGAAACAAAGCAGCTCA 58.337 45.000 0.00 0.00 30.70 4.26
8172 10610 2.977405 ATGTCGAAACAAAGCAGCTC 57.023 45.000 0.00 0.00 39.30 4.09
8173 10611 3.181487 ACAAATGTCGAAACAAAGCAGCT 60.181 39.130 0.00 0.00 39.30 4.24
8174 10612 3.115554 ACAAATGTCGAAACAAAGCAGC 58.884 40.909 0.00 0.00 39.30 5.25
8190 10628 9.097257 CTTTCACAAACATTTCAACCTACAAAT 57.903 29.630 0.00 0.00 0.00 2.32
8257 10695 0.749454 CAGCCCACCTGTATTGCTCC 60.749 60.000 0.00 0.00 36.79 4.70
8386 10824 2.555757 ACTGATCTTTTGCTGAGTTGCC 59.444 45.455 0.00 0.00 0.00 4.52
8389 10827 5.128919 AGTCAACTGATCTTTTGCTGAGTT 58.871 37.500 0.00 0.00 0.00 3.01
8390 10828 4.712476 AGTCAACTGATCTTTTGCTGAGT 58.288 39.130 0.00 0.00 0.00 3.41
8416 10854 2.104792 TCCAGGGATAGCCAGATTTTCG 59.895 50.000 0.00 0.00 35.15 3.46
8417 10855 3.864789 TCCAGGGATAGCCAGATTTTC 57.135 47.619 0.00 0.00 35.15 2.29
8432 10871 0.038618 TGACACGACGACATTCCAGG 60.039 55.000 0.00 0.00 0.00 4.45
8528 10967 7.171653 ACCAAAGCTAGAAGAATTAAAGCTCT 58.828 34.615 0.00 0.00 43.14 4.09
8543 10982 1.560923 CGATCCACGACCAAAGCTAG 58.439 55.000 0.00 0.00 45.77 3.42
8546 10985 2.106683 CCCGATCCACGACCAAAGC 61.107 63.158 0.00 0.00 45.77 3.51
8591 11031 5.820947 GTCCACTGTACATAAATTCCGGATT 59.179 40.000 4.15 0.00 0.00 3.01
8595 11035 4.032445 CACGTCCACTGTACATAAATTCCG 59.968 45.833 0.00 0.00 0.00 4.30
8599 11039 4.202245 AGCACGTCCACTGTACATAAAT 57.798 40.909 0.00 0.00 0.00 1.40
8611 11052 3.690139 TGAAAGTAACAAAAGCACGTCCA 59.310 39.130 0.00 0.00 0.00 4.02
8658 11099 1.268899 TCTCAGAACTTCGTCCCGTTC 59.731 52.381 0.00 0.00 39.74 3.95
8660 11101 0.882474 CTCTCAGAACTTCGTCCCGT 59.118 55.000 0.00 0.00 0.00 5.28
8661 11102 1.166129 TCTCTCAGAACTTCGTCCCG 58.834 55.000 0.00 0.00 0.00 5.14
8667 11108 6.492007 TTTGCAATGATCTCTCAGAACTTC 57.508 37.500 0.00 0.00 34.12 3.01
8668 11109 5.106237 GCTTTGCAATGATCTCTCAGAACTT 60.106 40.000 15.97 0.00 34.12 2.66
8697 11138 2.268076 AAACCCACGCTCACCATGC 61.268 57.895 0.00 0.00 0.00 4.06
8701 11142 2.485795 TTGCAAACCCACGCTCACC 61.486 57.895 0.00 0.00 0.00 4.02
8723 11167 3.680490 TGGTCGCACTGAATTTCCATAA 58.320 40.909 0.00 0.00 0.00 1.90
8726 11170 1.811965 CATGGTCGCACTGAATTTCCA 59.188 47.619 0.00 0.00 0.00 3.53
8753 11197 7.393841 AGTACTACTACATCAGTGGAGAAAC 57.606 40.000 0.00 0.00 38.71 2.78
8761 11205 9.118300 GGTGTTACATAGTACTACTACATCAGT 57.882 37.037 4.31 0.00 41.62 3.41
8762 11206 9.339850 AGGTGTTACATAGTACTACTACATCAG 57.660 37.037 4.31 0.00 32.84 2.90
8765 11209 9.690913 TTCAGGTGTTACATAGTACTACTACAT 57.309 33.333 4.31 0.00 32.84 2.29
8770 11214 9.480053 TTGTTTTCAGGTGTTACATAGTACTAC 57.520 33.333 4.31 0.00 0.00 2.73
8771 11215 9.480053 GTTGTTTTCAGGTGTTACATAGTACTA 57.520 33.333 4.77 4.77 0.00 1.82
8772 11216 7.988599 TGTTGTTTTCAGGTGTTACATAGTACT 59.011 33.333 0.00 0.00 0.00 2.73
8776 11220 9.528018 AAATTGTTGTTTTCAGGTGTTACATAG 57.472 29.630 0.00 0.00 0.00 2.23
8804 11248 4.065281 GAGTGTGTACCGCCGCCT 62.065 66.667 0.00 0.00 0.00 5.52
9264 11708 1.745864 CAGCTGCAGCCTCTCCTTG 60.746 63.158 34.39 20.26 43.38 3.61
9266 11710 3.400928 CCAGCTGCAGCCTCTCCT 61.401 66.667 34.39 12.93 43.38 3.69
9267 11711 3.388703 CTCCAGCTGCAGCCTCTCC 62.389 68.421 34.39 6.88 43.38 3.71
9268 11712 1.897225 TTCTCCAGCTGCAGCCTCTC 61.897 60.000 34.39 7.70 43.38 3.20
9283 11727 4.097361 GGTCACCGGGGGCTTCTC 62.097 72.222 8.94 0.00 0.00 2.87
9329 11773 2.415090 CCCAACCTCTACTACGTGAACG 60.415 54.545 0.00 0.40 46.33 3.95
9744 12188 2.063979 CACCTACCGCCAGATCCCA 61.064 63.158 0.00 0.00 0.00 4.37
9828 12272 1.227205 GAGCGACCTCATCTGGCTG 60.227 63.158 0.00 0.00 38.03 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.