Multiple sequence alignment - TraesCS3B01G322300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G322300 chr3B 100.000 3085 0 0 1 3085 521694871 521697955 0.000000e+00 5698.0
1 TraesCS3B01G322300 chr3B 100.000 1798 0 0 3482 5279 521698352 521700149 0.000000e+00 3321.0
2 TraesCS3B01G322300 chr3B 95.020 743 35 2 1 741 715068297 715069039 0.000000e+00 1166.0
3 TraesCS3B01G322300 chr3B 94.482 743 38 3 1 741 592298248 592298989 0.000000e+00 1142.0
4 TraesCS3B01G322300 chr3B 93.500 200 13 0 4910 5109 521699726 521699925 1.110000e-76 298.0
5 TraesCS3B01G322300 chr3B 93.500 200 13 0 4856 5055 521699780 521699979 1.110000e-76 298.0
6 TraesCS3B01G322300 chr3B 83.408 223 24 9 4889 5109 521699660 521699871 1.500000e-45 195.0
7 TraesCS3B01G322300 chr3B 97.727 44 1 0 3621 3664 418888124 418888167 5.670000e-10 76.8
8 TraesCS3B01G322300 chr3A 92.130 2249 87 29 867 3085 515886421 515888609 0.000000e+00 3090.0
9 TraesCS3B01G322300 chr3A 93.438 640 26 7 3658 4293 515889472 515890099 0.000000e+00 935.0
10 TraesCS3B01G322300 chr3A 92.939 524 35 2 4756 5279 515913311 515913832 0.000000e+00 761.0
11 TraesCS3B01G322300 chr3A 83.536 577 63 18 4535 5109 515913063 515913609 1.310000e-140 510.0
12 TraesCS3B01G322300 chr3A 94.500 200 11 0 4856 5055 515913464 515913663 5.130000e-80 309.0
13 TraesCS3B01G322300 chr3A 84.651 215 22 3 4797 5001 515913450 515913663 2.490000e-48 204.0
14 TraesCS3B01G322300 chr3A 90.141 71 6 1 4224 4293 515890118 515890188 2.020000e-14 91.6
15 TraesCS3B01G322300 chr3A 94.000 50 2 1 3623 3672 656101590 656101542 2.040000e-09 75.0
16 TraesCS3B01G322300 chr3A 100.000 33 0 0 3634 3666 563532118 563532086 1.590000e-05 62.1
17 TraesCS3B01G322300 chr3D 91.300 2207 121 33 922 3084 396208006 396210185 0.000000e+00 2946.0
18 TraesCS3B01G322300 chr3D 84.041 1673 156 57 3486 5109 396210186 396211796 0.000000e+00 1507.0
19 TraesCS3B01G322300 chr3D 94.274 489 26 2 4756 5244 396211498 396211984 0.000000e+00 747.0
20 TraesCS3B01G322300 chr3D 93.500 200 13 0 4856 5055 396211651 396211850 1.110000e-76 298.0
21 TraesCS3B01G322300 chr3D 91.781 146 12 0 4856 5001 396211705 396211850 2.490000e-48 204.0
22 TraesCS3B01G322300 chr3D 80.814 172 18 7 4785 4943 396211677 396211846 2.580000e-23 121.0
23 TraesCS3B01G322300 chr4B 95.340 751 32 3 1 748 614117816 614117066 0.000000e+00 1190.0
24 TraesCS3B01G322300 chr4B 94.737 741 36 3 1 739 47496618 47497357 0.000000e+00 1149.0
25 TraesCS3B01G322300 chr4B 94.231 52 2 1 3614 3665 498405210 498405260 1.580000e-10 78.7
26 TraesCS3B01G322300 chr5B 94.467 741 39 2 1 739 655087537 655086797 0.000000e+00 1140.0
27 TraesCS3B01G322300 chr5B 94.110 747 37 4 1 741 383517621 383518366 0.000000e+00 1129.0
28 TraesCS3B01G322300 chr6B 94.467 741 38 3 1 739 507913361 507914100 0.000000e+00 1138.0
29 TraesCS3B01G322300 chr7B 94.094 745 39 4 1 741 116477488 116478231 0.000000e+00 1127.0
30 TraesCS3B01G322300 chr7B 94.086 744 41 3 1 742 496876866 496876124 0.000000e+00 1127.0
31 TraesCS3B01G322300 chr1D 84.794 388 48 8 1044 1421 441205212 441205598 3.860000e-101 379.0
32 TraesCS3B01G322300 chr1A 84.062 389 48 11 1044 1421 536884309 536883924 3.890000e-96 363.0
33 TraesCS3B01G322300 chr1A 87.815 238 29 0 3832 4069 536882723 536882486 4.030000e-71 279.0
34 TraesCS3B01G322300 chr1A 89.474 57 6 0 3609 3665 177523447 177523503 7.330000e-09 73.1
35 TraesCS3B01G322300 chr1B 83.586 396 51 11 1039 1426 599221948 599222337 5.030000e-95 359.0
36 TraesCS3B01G322300 chr1B 87.295 244 31 0 3826 4069 599223357 599223600 4.030000e-71 279.0
37 TraesCS3B01G322300 chr1B 86.885 244 32 0 3826 4069 599227525 599227768 1.870000e-69 274.0
38 TraesCS3B01G322300 chr7A 95.122 41 2 0 3626 3666 487250872 487250832 1.230000e-06 65.8
39 TraesCS3B01G322300 chr7D 100.000 28 0 0 3640 3667 19947388 19947361 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G322300 chr3B 521694871 521700149 5278 False 1962.0 5698 94.0816 1 5279 5 chr3B.!!$F4 5278
1 TraesCS3B01G322300 chr3B 715068297 715069039 742 False 1166.0 1166 95.0200 1 741 1 chr3B.!!$F3 740
2 TraesCS3B01G322300 chr3B 592298248 592298989 741 False 1142.0 1142 94.4820 1 741 1 chr3B.!!$F2 740
3 TraesCS3B01G322300 chr3A 515886421 515890188 3767 False 1372.2 3090 91.9030 867 4293 3 chr3A.!!$F1 3426
4 TraesCS3B01G322300 chr3A 515913063 515913832 769 False 446.0 761 88.9065 4535 5279 4 chr3A.!!$F2 744
5 TraesCS3B01G322300 chr3D 396208006 396211984 3978 False 970.5 2946 89.2850 922 5244 6 chr3D.!!$F1 4322
6 TraesCS3B01G322300 chr4B 614117066 614117816 750 True 1190.0 1190 95.3400 1 748 1 chr4B.!!$R1 747
7 TraesCS3B01G322300 chr4B 47496618 47497357 739 False 1149.0 1149 94.7370 1 739 1 chr4B.!!$F1 738
8 TraesCS3B01G322300 chr5B 655086797 655087537 740 True 1140.0 1140 94.4670 1 739 1 chr5B.!!$R1 738
9 TraesCS3B01G322300 chr5B 383517621 383518366 745 False 1129.0 1129 94.1100 1 741 1 chr5B.!!$F1 740
10 TraesCS3B01G322300 chr6B 507913361 507914100 739 False 1138.0 1138 94.4670 1 739 1 chr6B.!!$F1 738
11 TraesCS3B01G322300 chr7B 116477488 116478231 743 False 1127.0 1127 94.0940 1 741 1 chr7B.!!$F1 740
12 TraesCS3B01G322300 chr7B 496876124 496876866 742 True 1127.0 1127 94.0860 1 742 1 chr7B.!!$R1 741
13 TraesCS3B01G322300 chr1A 536882486 536884309 1823 True 321.0 363 85.9385 1044 4069 2 chr1A.!!$R1 3025
14 TraesCS3B01G322300 chr1B 599221948 599227768 5820 False 304.0 359 85.9220 1039 4069 3 chr1B.!!$F1 3030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 993 0.100503 GACAGAGAGCTCGGAGAAGC 59.899 60.000 9.69 0.0 34.09 3.86 F
1374 1398 0.104855 GCCAGTCCGACTGCATGATA 59.895 55.000 21.26 0.0 44.63 2.15 F
1459 1483 1.059369 CGTTGCCGCTCAGATTTCG 59.941 57.895 0.00 0.0 0.00 3.46 F
2856 6662 1.277557 ACCAAGTGCTAGAAGCTCCTG 59.722 52.381 0.00 0.0 42.97 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2913 6719 1.884579 CAACACAGCCTCTCTGCATTT 59.115 47.619 0.00 0.0 46.76 2.32 R
3488 7312 9.851686 TCCTCTGATTAATAATGTAAGCATTGT 57.148 29.630 3.39 0.0 44.32 2.71 R
3607 8009 5.174037 ACTTCAAATTATGGAACGGAGGA 57.826 39.130 0.00 0.0 0.00 3.71 R
4417 9384 0.250727 CCCTCGGAAGTTTGGAGCAA 60.251 55.000 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
469 475 1.573108 GGGAAGAGTGGAGTGGATGA 58.427 55.000 0.00 0.00 0.00 2.92
600 607 2.734346 CCCCAAAAGCGCGCAAAG 60.734 61.111 35.10 19.14 0.00 2.77
624 631 2.183300 CGCGGATGGGTCGAAAGA 59.817 61.111 0.00 0.00 38.16 2.52
657 664 1.358759 CAAAAGTCCGTTTGCGCCT 59.641 52.632 4.18 0.00 36.67 5.52
742 753 2.902457 CGGTGGGGTTGGCCTAACT 61.902 63.158 3.32 0.00 39.31 2.24
745 756 1.254026 GTGGGGTTGGCCTAACTTTC 58.746 55.000 3.32 2.41 39.31 2.62
747 758 1.203001 TGGGGTTGGCCTAACTTTCAG 60.203 52.381 3.32 0.00 39.31 3.02
748 759 0.888619 GGGTTGGCCTAACTTTCAGC 59.111 55.000 3.32 0.00 39.31 4.26
749 760 0.888619 GGTTGGCCTAACTTTCAGCC 59.111 55.000 3.32 0.00 45.96 4.85
750 761 0.888619 GTTGGCCTAACTTTCAGCCC 59.111 55.000 3.32 0.00 45.14 5.19
751 762 0.480690 TTGGCCTAACTTTCAGCCCA 59.519 50.000 3.32 0.00 45.14 5.36
752 763 0.704076 TGGCCTAACTTTCAGCCCAT 59.296 50.000 3.32 0.00 45.14 4.00
753 764 1.077005 TGGCCTAACTTTCAGCCCATT 59.923 47.619 3.32 0.00 45.14 3.16
754 765 2.179427 GGCCTAACTTTCAGCCCATTT 58.821 47.619 0.00 0.00 39.60 2.32
755 766 2.567169 GGCCTAACTTTCAGCCCATTTT 59.433 45.455 0.00 0.00 39.60 1.82
756 767 3.368427 GGCCTAACTTTCAGCCCATTTTC 60.368 47.826 0.00 0.00 39.60 2.29
757 768 3.368427 GCCTAACTTTCAGCCCATTTTCC 60.368 47.826 0.00 0.00 0.00 3.13
758 769 4.089361 CCTAACTTTCAGCCCATTTTCCT 58.911 43.478 0.00 0.00 0.00 3.36
759 770 4.082026 CCTAACTTTCAGCCCATTTTCCTG 60.082 45.833 0.00 0.00 0.00 3.86
760 771 2.250924 ACTTTCAGCCCATTTTCCTGG 58.749 47.619 0.00 0.00 35.95 4.45
761 772 2.158325 ACTTTCAGCCCATTTTCCTGGA 60.158 45.455 0.00 0.00 38.69 3.86
762 773 2.692709 TTCAGCCCATTTTCCTGGAA 57.307 45.000 4.68 4.68 38.69 3.53
763 774 2.692709 TCAGCCCATTTTCCTGGAAA 57.307 45.000 17.65 17.65 38.69 3.13
764 775 2.969628 TCAGCCCATTTTCCTGGAAAA 58.030 42.857 30.60 30.60 44.04 2.29
765 776 3.312890 TCAGCCCATTTTCCTGGAAAAA 58.687 40.909 31.70 18.65 43.32 1.94
784 795 3.369546 AAAACTTTGAGCCCATTCGTG 57.630 42.857 0.00 0.00 0.00 4.35
785 796 1.981256 AACTTTGAGCCCATTCGTGT 58.019 45.000 0.00 0.00 0.00 4.49
786 797 1.238439 ACTTTGAGCCCATTCGTGTG 58.762 50.000 0.00 0.00 0.00 3.82
787 798 1.238439 CTTTGAGCCCATTCGTGTGT 58.762 50.000 0.00 0.00 0.00 3.72
788 799 1.197721 CTTTGAGCCCATTCGTGTGTC 59.802 52.381 0.00 0.00 0.00 3.67
789 800 0.605319 TTGAGCCCATTCGTGTGTCC 60.605 55.000 0.00 0.00 0.00 4.02
790 801 2.047274 AGCCCATTCGTGTGTCCG 60.047 61.111 0.00 0.00 0.00 4.79
791 802 3.799755 GCCCATTCGTGTGTCCGC 61.800 66.667 0.00 0.00 0.00 5.54
792 803 2.047274 CCCATTCGTGTGTCCGCT 60.047 61.111 0.00 0.00 0.00 5.52
793 804 2.100631 CCCATTCGTGTGTCCGCTC 61.101 63.158 0.00 0.00 0.00 5.03
794 805 1.374125 CCATTCGTGTGTCCGCTCA 60.374 57.895 0.00 0.00 0.00 4.26
795 806 1.354337 CCATTCGTGTGTCCGCTCAG 61.354 60.000 0.00 0.00 0.00 3.35
796 807 0.388520 CATTCGTGTGTCCGCTCAGA 60.389 55.000 0.00 0.00 0.00 3.27
797 808 0.317160 ATTCGTGTGTCCGCTCAGAA 59.683 50.000 0.00 0.00 0.00 3.02
798 809 0.596600 TTCGTGTGTCCGCTCAGAAC 60.597 55.000 0.00 0.00 0.00 3.01
799 810 2.022129 CGTGTGTCCGCTCAGAACC 61.022 63.158 0.00 0.00 0.00 3.62
800 811 1.367840 GTGTGTCCGCTCAGAACCT 59.632 57.895 0.00 0.00 0.00 3.50
801 812 0.601558 GTGTGTCCGCTCAGAACCTA 59.398 55.000 0.00 0.00 0.00 3.08
802 813 0.888619 TGTGTCCGCTCAGAACCTAG 59.111 55.000 0.00 0.00 0.00 3.02
803 814 0.889306 GTGTCCGCTCAGAACCTAGT 59.111 55.000 0.00 0.00 0.00 2.57
804 815 0.888619 TGTCCGCTCAGAACCTAGTG 59.111 55.000 0.00 0.00 0.00 2.74
805 816 0.458716 GTCCGCTCAGAACCTAGTGC 60.459 60.000 0.00 0.00 0.00 4.40
806 817 0.612174 TCCGCTCAGAACCTAGTGCT 60.612 55.000 0.00 0.00 0.00 4.40
807 818 0.459237 CCGCTCAGAACCTAGTGCTG 60.459 60.000 0.00 0.00 40.40 4.41
808 819 0.459237 CGCTCAGAACCTAGTGCTGG 60.459 60.000 2.91 0.00 39.55 4.85
809 820 0.107945 GCTCAGAACCTAGTGCTGGG 60.108 60.000 2.91 0.34 42.42 4.45
810 821 0.107945 CTCAGAACCTAGTGCTGGGC 60.108 60.000 2.91 0.00 39.55 5.36
811 822 1.078143 CAGAACCTAGTGCTGGGCC 60.078 63.158 0.00 0.00 35.66 5.80
812 823 1.229658 AGAACCTAGTGCTGGGCCT 60.230 57.895 4.53 0.00 34.14 5.19
813 824 1.078143 GAACCTAGTGCTGGGCCTG 60.078 63.158 4.53 5.32 34.14 4.85
814 825 2.543067 GAACCTAGTGCTGGGCCTGG 62.543 65.000 12.70 2.60 34.14 4.45
815 826 3.011517 CCTAGTGCTGGGCCTGGT 61.012 66.667 12.70 0.00 0.00 4.00
816 827 2.606587 CCTAGTGCTGGGCCTGGTT 61.607 63.158 12.70 0.00 0.00 3.67
817 828 1.377725 CTAGTGCTGGGCCTGGTTG 60.378 63.158 12.70 0.00 0.00 3.77
818 829 2.129555 CTAGTGCTGGGCCTGGTTGT 62.130 60.000 12.70 0.00 0.00 3.32
819 830 1.715019 TAGTGCTGGGCCTGGTTGTT 61.715 55.000 12.70 0.00 0.00 2.83
820 831 2.521465 TGCTGGGCCTGGTTGTTG 60.521 61.111 12.70 0.00 0.00 3.33
821 832 2.521708 GCTGGGCCTGGTTGTTGT 60.522 61.111 12.70 0.00 0.00 3.32
822 833 1.228429 GCTGGGCCTGGTTGTTGTA 60.228 57.895 12.70 0.00 0.00 2.41
823 834 0.825840 GCTGGGCCTGGTTGTTGTAA 60.826 55.000 12.70 0.00 0.00 2.41
824 835 0.958822 CTGGGCCTGGTTGTTGTAAC 59.041 55.000 4.53 0.00 0.00 2.50
825 836 0.259065 TGGGCCTGGTTGTTGTAACA 59.741 50.000 4.53 0.00 37.08 2.41
826 837 0.958822 GGGCCTGGTTGTTGTAACAG 59.041 55.000 0.84 0.00 40.50 3.16
827 838 0.313987 GGCCTGGTTGTTGTAACAGC 59.686 55.000 0.00 3.37 40.50 4.40
828 839 1.028905 GCCTGGTTGTTGTAACAGCA 58.971 50.000 12.51 0.00 41.24 4.41
829 840 1.001378 GCCTGGTTGTTGTAACAGCAG 60.001 52.381 12.51 13.40 41.24 4.24
830 841 1.608590 CCTGGTTGTTGTAACAGCAGG 59.391 52.381 20.25 20.25 42.85 4.85
831 842 2.571212 CTGGTTGTTGTAACAGCAGGA 58.429 47.619 12.51 0.00 41.24 3.86
832 843 2.549754 CTGGTTGTTGTAACAGCAGGAG 59.450 50.000 12.51 3.16 41.24 3.69
833 844 1.880027 GGTTGTTGTAACAGCAGGAGG 59.120 52.381 12.51 0.00 41.24 4.30
834 845 2.486548 GGTTGTTGTAACAGCAGGAGGA 60.487 50.000 12.51 0.00 41.24 3.71
835 846 2.808543 GTTGTTGTAACAGCAGGAGGAG 59.191 50.000 6.71 0.00 40.50 3.69
836 847 1.347707 TGTTGTAACAGCAGGAGGAGG 59.652 52.381 0.00 0.00 34.30 4.30
837 848 0.984230 TTGTAACAGCAGGAGGAGGG 59.016 55.000 0.00 0.00 0.00 4.30
838 849 1.222113 GTAACAGCAGGAGGAGGGC 59.778 63.158 0.00 0.00 0.00 5.19
839 850 1.995626 TAACAGCAGGAGGAGGGCC 60.996 63.158 0.00 0.00 0.00 5.80
844 855 3.406200 CAGGAGGAGGGCCCACAG 61.406 72.222 27.56 1.90 37.41 3.66
845 856 3.947041 AGGAGGAGGGCCCACAGT 61.947 66.667 27.56 9.07 37.41 3.55
846 857 3.403558 GGAGGAGGGCCCACAGTC 61.404 72.222 27.56 17.85 37.41 3.51
847 858 2.284995 GAGGAGGGCCCACAGTCT 60.285 66.667 27.56 10.69 37.41 3.24
848 859 1.001760 GAGGAGGGCCCACAGTCTA 59.998 63.158 27.56 0.00 37.41 2.59
849 860 0.617820 GAGGAGGGCCCACAGTCTAA 60.618 60.000 27.56 0.00 37.41 2.10
850 861 0.910088 AGGAGGGCCCACAGTCTAAC 60.910 60.000 27.56 2.51 37.41 2.34
851 862 1.218316 GAGGGCCCACAGTCTAACG 59.782 63.158 27.56 0.00 0.00 3.18
852 863 1.535687 AGGGCCCACAGTCTAACGT 60.536 57.895 27.56 0.00 0.00 3.99
853 864 0.251922 AGGGCCCACAGTCTAACGTA 60.252 55.000 27.56 0.00 0.00 3.57
854 865 0.175073 GGGCCCACAGTCTAACGTAG 59.825 60.000 19.95 0.00 0.00 3.51
855 866 0.459759 GGCCCACAGTCTAACGTAGC 60.460 60.000 0.00 0.00 0.00 3.58
856 867 0.531200 GCCCACAGTCTAACGTAGCT 59.469 55.000 0.00 0.00 0.00 3.32
857 868 1.736032 GCCCACAGTCTAACGTAGCTG 60.736 57.143 0.00 0.00 36.59 4.24
858 869 1.135083 CCCACAGTCTAACGTAGCTGG 60.135 57.143 0.00 0.00 35.60 4.85
859 870 1.135083 CCACAGTCTAACGTAGCTGGG 60.135 57.143 0.00 8.13 35.60 4.45
860 871 0.531200 ACAGTCTAACGTAGCTGGGC 59.469 55.000 0.00 0.00 35.60 5.36
861 872 0.818296 CAGTCTAACGTAGCTGGGCT 59.182 55.000 0.00 0.00 43.41 5.19
862 873 1.204941 CAGTCTAACGTAGCTGGGCTT 59.795 52.381 0.00 0.00 40.44 4.35
863 874 1.204941 AGTCTAACGTAGCTGGGCTTG 59.795 52.381 0.00 0.00 40.44 4.01
864 875 0.535335 TCTAACGTAGCTGGGCTTGG 59.465 55.000 0.00 0.00 40.44 3.61
865 876 0.462047 CTAACGTAGCTGGGCTTGGG 60.462 60.000 0.00 0.00 40.44 4.12
866 877 2.530958 TAACGTAGCTGGGCTTGGGC 62.531 60.000 0.00 0.00 40.44 5.36
867 878 4.408821 CGTAGCTGGGCTTGGGCA 62.409 66.667 0.00 0.00 40.44 5.36
868 879 2.439156 GTAGCTGGGCTTGGGCAG 60.439 66.667 0.00 0.00 40.44 4.85
869 880 2.935481 TAGCTGGGCTTGGGCAGT 60.935 61.111 0.00 0.00 40.44 4.40
870 881 2.971598 TAGCTGGGCTTGGGCAGTC 61.972 63.158 0.00 0.00 40.44 3.51
871 882 4.357279 GCTGGGCTTGGGCAGTCT 62.357 66.667 0.00 0.00 40.87 3.24
872 883 2.971598 GCTGGGCTTGGGCAGTCTA 61.972 63.158 0.00 0.00 40.87 2.59
875 886 1.377333 GGGCTTGGGCAGTCTACAC 60.377 63.158 0.00 0.00 40.87 2.90
963 981 0.615850 TGCCGAGAGAGAGACAGAGA 59.384 55.000 0.00 0.00 0.00 3.10
964 982 1.299541 GCCGAGAGAGAGACAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
975 993 0.100503 GACAGAGAGCTCGGAGAAGC 59.899 60.000 9.69 0.00 34.09 3.86
1374 1398 0.104855 GCCAGTCCGACTGCATGATA 59.895 55.000 21.26 0.00 44.63 2.15
1459 1483 1.059369 CGTTGCCGCTCAGATTTCG 59.941 57.895 0.00 0.00 0.00 3.46
1543 1567 8.600449 ATCAATTGAATCGGATAGAAGTTCTC 57.400 34.615 13.09 0.00 0.00 2.87
1624 1648 2.627945 TGTGAATGTTATCCACGCTCC 58.372 47.619 0.00 0.00 33.78 4.70
1625 1649 2.027653 TGTGAATGTTATCCACGCTCCA 60.028 45.455 0.00 0.00 33.78 3.86
1626 1650 3.006940 GTGAATGTTATCCACGCTCCAA 58.993 45.455 0.00 0.00 0.00 3.53
1685 1712 2.791383 TTCGAAACCTGCCACAAATG 57.209 45.000 0.00 0.00 0.00 2.32
1686 1713 1.974265 TCGAAACCTGCCACAAATGA 58.026 45.000 0.00 0.00 0.00 2.57
1688 1715 2.034053 TCGAAACCTGCCACAAATGAAC 59.966 45.455 0.00 0.00 0.00 3.18
1689 1716 2.223688 CGAAACCTGCCACAAATGAACA 60.224 45.455 0.00 0.00 0.00 3.18
1690 1717 2.888834 AACCTGCCACAAATGAACAC 57.111 45.000 0.00 0.00 0.00 3.32
1704 1733 1.608109 TGAACACCGCTCGTACTAACA 59.392 47.619 0.00 0.00 0.00 2.41
1705 1734 2.034432 TGAACACCGCTCGTACTAACAA 59.966 45.455 0.00 0.00 0.00 2.83
1914 1943 5.932619 TGCTAAAACTAGAGCCTGTGATA 57.067 39.130 0.00 0.00 37.94 2.15
1956 1987 7.722949 ATAAGCCAATTGAATCTGAAAGGAA 57.277 32.000 7.12 0.00 0.00 3.36
2047 2082 1.321474 TGTACGGAGTTCACGTTCCT 58.679 50.000 2.69 0.00 37.78 3.36
2097 2132 2.468777 CACAAAATGAACAACAGCTCGC 59.531 45.455 0.00 0.00 0.00 5.03
2115 2150 2.370849 TCGCCCTAAGTCCTTTTTCACT 59.629 45.455 0.00 0.00 0.00 3.41
2261 2297 9.376075 CATCCCTAGTGCTAAATACTATCAATG 57.624 37.037 0.00 0.00 30.83 2.82
2320 2364 2.430921 AGAAGCCTGCGACGAACG 60.431 61.111 0.00 0.00 45.66 3.95
2547 3842 9.745018 AATATCCTATTTCCTGTGATAATGTGG 57.255 33.333 0.00 0.00 0.00 4.17
2615 5012 4.803088 TCAAAAAGGAAGAAAACATGCACG 59.197 37.500 0.00 0.00 0.00 5.34
2655 5052 5.618640 GCATGAACTTGTTTAGCCAAGAGAG 60.619 44.000 7.84 0.00 43.65 3.20
2659 5056 2.859165 TGTTTAGCCAAGAGAGTGGG 57.141 50.000 0.00 0.00 39.26 4.61
2749 5355 2.996631 ACTCCCTCTGATTCACATTGC 58.003 47.619 0.00 0.00 0.00 3.56
2793 5594 8.416485 ACACAGTTGTCAAAGTAAGTACTAAC 57.584 34.615 0.00 0.00 34.99 2.34
2794 5595 8.255905 ACACAGTTGTCAAAGTAAGTACTAACT 58.744 33.333 0.00 0.00 34.99 2.24
2855 6653 1.650528 ACCAAGTGCTAGAAGCTCCT 58.349 50.000 0.00 0.00 42.97 3.69
2856 6662 1.277557 ACCAAGTGCTAGAAGCTCCTG 59.722 52.381 0.00 0.00 42.97 3.86
2913 6719 2.042464 ACTCTTTCTCCTGCACAGTGA 58.958 47.619 4.15 0.00 0.00 3.41
3564 7966 5.353123 TCTCGGTTTACATGGAAATAAGTGC 59.647 40.000 6.33 0.00 0.00 4.40
3599 8001 3.798515 TCCCCTAGGAACAAAGCTAGAA 58.201 45.455 11.48 0.00 40.08 2.10
3607 8009 8.207545 CCTAGGAACAAAGCTAGAATTATCTGT 58.792 37.037 1.05 0.00 37.10 3.41
3628 8030 4.941263 TGTCCTCCGTTCCATAATTTGAAG 59.059 41.667 0.00 0.00 0.00 3.02
3656 8063 3.930229 CCACGACAAGAATTATGGAACGA 59.070 43.478 0.00 0.00 0.00 3.85
3792 8325 6.294731 GGTTTGCTTTAAGGTCACAATCTCAT 60.295 38.462 0.00 0.00 0.00 2.90
4073 8978 1.598130 GTGGACCAAGTGAAGCGCT 60.598 57.895 2.64 2.64 0.00 5.92
4075 8980 2.558313 GACCAAGTGAAGCGCTGC 59.442 61.111 12.58 10.71 0.00 5.25
4123 9028 6.707440 TTTGTTTTTGATTCTACCTGCTCA 57.293 33.333 0.00 0.00 0.00 4.26
4124 9029 6.899393 TTGTTTTTGATTCTACCTGCTCAT 57.101 33.333 0.00 0.00 0.00 2.90
4125 9030 6.500684 TGTTTTTGATTCTACCTGCTCATC 57.499 37.500 0.00 0.00 0.00 2.92
4126 9031 6.003326 TGTTTTTGATTCTACCTGCTCATCA 58.997 36.000 0.00 0.00 0.00 3.07
4141 9046 4.943705 TGCTCATCAACTGAAATAAGGACC 59.056 41.667 0.00 0.00 32.14 4.46
4165 9070 0.028902 GCTCGGACGTGCAAAACTTT 59.971 50.000 8.11 0.00 35.06 2.66
4166 9071 1.533129 GCTCGGACGTGCAAAACTTTT 60.533 47.619 8.11 0.00 35.06 2.27
4167 9072 2.108700 CTCGGACGTGCAAAACTTTTG 58.891 47.619 8.11 9.54 0.00 2.44
4168 9073 0.570272 CGGACGTGCAAAACTTTTGC 59.430 50.000 25.97 25.97 45.11 3.68
4170 9075 1.587946 GGACGTGCAAAACTTTTGCTG 59.412 47.619 30.13 25.18 45.13 4.41
4171 9076 2.258755 GACGTGCAAAACTTTTGCTGT 58.741 42.857 30.13 27.34 45.13 4.40
4173 9078 2.411409 ACGTGCAAAACTTTTGCTGTTG 59.589 40.909 30.13 21.32 45.13 3.33
4184 9089 1.674764 TTGCTGTTGTTGTGCCTGGG 61.675 55.000 0.00 0.00 0.00 4.45
4185 9090 1.827789 GCTGTTGTTGTGCCTGGGA 60.828 57.895 0.00 0.00 0.00 4.37
4206 9111 2.608970 GATGTATGCCCGGGCTGTGT 62.609 60.000 43.34 28.13 42.51 3.72
4216 9121 3.044305 GGCTGTGTGGACGAGCAC 61.044 66.667 0.00 0.00 34.20 4.40
4247 9152 1.211949 ACCTGGTGTTGCTGTAACTGT 59.788 47.619 9.94 0.00 40.05 3.55
4276 9181 8.887036 TGCTCTACATATTGTAATACACCTTG 57.113 34.615 0.00 0.00 31.67 3.61
4280 9185 9.908152 TCTACATATTGTAATACACCTTGATCG 57.092 33.333 0.00 0.00 31.67 3.69
4287 9192 2.273370 TACACCTTGATCGCTTCGTC 57.727 50.000 0.00 0.00 0.00 4.20
4288 9193 0.732880 ACACCTTGATCGCTTCGTCG 60.733 55.000 0.00 0.00 0.00 5.12
4290 9195 0.732880 ACCTTGATCGCTTCGTCGTG 60.733 55.000 0.00 0.00 0.00 4.35
4291 9196 0.732880 CCTTGATCGCTTCGTCGTGT 60.733 55.000 0.00 0.00 0.00 4.49
4292 9197 1.466866 CCTTGATCGCTTCGTCGTGTA 60.467 52.381 0.00 0.00 0.00 2.90
4293 9198 2.247637 CTTGATCGCTTCGTCGTGTAA 58.752 47.619 0.00 0.00 0.00 2.41
4294 9199 1.891178 TGATCGCTTCGTCGTGTAAG 58.109 50.000 0.00 0.00 0.00 2.34
4295 9200 1.465777 TGATCGCTTCGTCGTGTAAGA 59.534 47.619 0.00 0.00 0.00 2.10
4296 9201 2.095617 TGATCGCTTCGTCGTGTAAGAA 60.096 45.455 0.00 0.00 0.00 2.52
4297 9202 2.624316 TCGCTTCGTCGTGTAAGAAT 57.376 45.000 0.00 0.00 0.00 2.40
4298 9203 2.937591 TCGCTTCGTCGTGTAAGAATT 58.062 42.857 0.00 0.00 0.00 2.17
4299 9204 3.311106 TCGCTTCGTCGTGTAAGAATTT 58.689 40.909 0.00 0.00 0.00 1.82
4300 9205 3.362831 TCGCTTCGTCGTGTAAGAATTTC 59.637 43.478 0.00 0.00 0.00 2.17
4301 9206 3.120616 CGCTTCGTCGTGTAAGAATTTCA 59.879 43.478 0.00 0.00 0.00 2.69
4302 9207 4.629065 GCTTCGTCGTGTAAGAATTTCAG 58.371 43.478 0.00 0.00 0.00 3.02
4303 9208 4.629065 CTTCGTCGTGTAAGAATTTCAGC 58.371 43.478 0.00 0.00 0.00 4.26
4304 9209 2.991190 TCGTCGTGTAAGAATTTCAGCC 59.009 45.455 0.00 0.00 0.00 4.85
4305 9210 2.734606 CGTCGTGTAAGAATTTCAGCCA 59.265 45.455 0.00 0.00 0.00 4.75
4306 9211 3.185594 CGTCGTGTAAGAATTTCAGCCAA 59.814 43.478 0.00 0.00 0.00 4.52
4307 9212 4.666655 CGTCGTGTAAGAATTTCAGCCAAG 60.667 45.833 0.00 0.00 0.00 3.61
4308 9213 4.213482 GTCGTGTAAGAATTTCAGCCAAGT 59.787 41.667 0.00 0.00 0.00 3.16
4309 9214 4.213270 TCGTGTAAGAATTTCAGCCAAGTG 59.787 41.667 0.00 0.00 0.00 3.16
4310 9215 4.229876 GTGTAAGAATTTCAGCCAAGTGC 58.770 43.478 0.00 0.00 41.71 4.40
4311 9216 3.888323 TGTAAGAATTTCAGCCAAGTGCA 59.112 39.130 0.00 0.00 44.83 4.57
4312 9217 4.340666 TGTAAGAATTTCAGCCAAGTGCAA 59.659 37.500 0.00 0.00 44.83 4.08
4313 9218 4.612264 AAGAATTTCAGCCAAGTGCAAT 57.388 36.364 0.00 0.00 44.83 3.56
4314 9219 4.612264 AGAATTTCAGCCAAGTGCAATT 57.388 36.364 0.00 0.00 44.83 2.32
4315 9220 4.312443 AGAATTTCAGCCAAGTGCAATTG 58.688 39.130 19.59 19.59 44.83 2.32
4316 9221 4.039488 AGAATTTCAGCCAAGTGCAATTGA 59.961 37.500 27.27 7.30 44.83 2.57
4317 9222 3.374220 TTTCAGCCAAGTGCAATTGAG 57.626 42.857 27.27 17.65 44.83 3.02
4318 9223 0.599558 TCAGCCAAGTGCAATTGAGC 59.400 50.000 27.27 25.18 44.83 4.26
4319 9224 0.315886 CAGCCAAGTGCAATTGAGCA 59.684 50.000 28.90 0.00 44.83 4.26
4329 9234 4.906065 TGCAATTGAGCACTTCCATATC 57.094 40.909 10.34 0.00 40.11 1.63
4330 9235 4.271661 TGCAATTGAGCACTTCCATATCA 58.728 39.130 10.34 0.00 40.11 2.15
4331 9236 4.891168 TGCAATTGAGCACTTCCATATCAT 59.109 37.500 10.34 0.00 40.11 2.45
4332 9237 5.361571 TGCAATTGAGCACTTCCATATCATT 59.638 36.000 10.34 0.00 40.11 2.57
4333 9238 6.127281 TGCAATTGAGCACTTCCATATCATTT 60.127 34.615 10.34 0.00 40.11 2.32
4334 9239 6.759827 GCAATTGAGCACTTCCATATCATTTT 59.240 34.615 10.34 0.00 0.00 1.82
4335 9240 7.279313 GCAATTGAGCACTTCCATATCATTTTT 59.721 33.333 10.34 0.00 0.00 1.94
4336 9241 8.600625 CAATTGAGCACTTCCATATCATTTTTG 58.399 33.333 0.00 0.00 0.00 2.44
4337 9242 5.653507 TGAGCACTTCCATATCATTTTTGC 58.346 37.500 0.00 0.00 0.00 3.68
4338 9243 5.185442 TGAGCACTTCCATATCATTTTTGCA 59.815 36.000 0.00 0.00 0.00 4.08
4339 9244 6.127281 TGAGCACTTCCATATCATTTTTGCAT 60.127 34.615 0.00 0.00 0.00 3.96
4340 9245 6.046593 AGCACTTCCATATCATTTTTGCATG 58.953 36.000 0.00 0.00 0.00 4.06
4374 9341 2.422479 TGCTACGAGTACAGGACATGTC 59.578 50.000 17.91 17.91 42.70 3.06
4397 9364 2.159667 ACGTCATCATGATTTGCACACG 60.160 45.455 5.16 9.85 0.00 4.49
4403 9370 5.353678 TCATCATGATTTGCACACGATTGTA 59.646 36.000 5.16 0.00 33.30 2.41
4404 9371 5.816449 TCATGATTTGCACACGATTGTAT 57.184 34.783 0.00 0.00 33.30 2.29
4405 9372 5.571277 TCATGATTTGCACACGATTGTATG 58.429 37.500 0.00 0.00 33.30 2.39
4406 9373 5.353678 TCATGATTTGCACACGATTGTATGA 59.646 36.000 0.00 0.00 33.30 2.15
4408 9375 5.571277 TGATTTGCACACGATTGTATGATG 58.429 37.500 0.00 0.00 33.30 3.07
4409 9376 5.353678 TGATTTGCACACGATTGTATGATGA 59.646 36.000 0.00 0.00 33.30 2.92
4410 9377 5.816449 TTTGCACACGATTGTATGATGAT 57.184 34.783 0.00 0.00 33.30 2.45
4411 9378 4.799419 TGCACACGATTGTATGATGATG 57.201 40.909 0.00 0.00 33.30 3.07
4412 9379 3.002553 TGCACACGATTGTATGATGATGC 59.997 43.478 0.00 0.00 33.30 3.91
4413 9380 3.002553 GCACACGATTGTATGATGATGCA 59.997 43.478 0.00 0.00 33.30 3.96
4414 9381 4.496175 GCACACGATTGTATGATGATGCAA 60.496 41.667 0.00 0.00 38.38 4.08
4417 9384 6.693978 CACACGATTGTATGATGATGCAAATT 59.306 34.615 0.00 0.00 37.66 1.82
4436 9403 0.250727 TTGCTCCAAACTTCCGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
4440 9407 1.377333 CCAAACTTCCGAGGGCTCC 60.377 63.158 0.00 0.00 0.00 4.70
4473 9440 8.144478 TGTGCTGCAAGTTTTTATTTACCATAA 58.856 29.630 2.77 0.00 35.30 1.90
4475 9442 8.364142 TGCTGCAAGTTTTTATTTACCATAAGT 58.636 29.630 0.00 0.00 35.30 2.24
4476 9443 8.860128 GCTGCAAGTTTTTATTTACCATAAGTC 58.140 33.333 0.00 0.00 35.30 3.01
4495 9465 8.568794 CATAAGTCTCTCTGGATGTAATCGTAA 58.431 37.037 0.00 0.00 46.86 3.18
4502 9472 7.201145 TCTCTGGATGTAATCGTAAGCTTAAC 58.799 38.462 7.99 2.96 46.86 2.01
4503 9473 6.869695 TCTGGATGTAATCGTAAGCTTAACA 58.130 36.000 7.99 9.01 46.86 2.41
4505 9475 6.869695 TGGATGTAATCGTAAGCTTAACAGA 58.130 36.000 7.99 8.71 46.86 3.41
4508 9478 9.472361 GGATGTAATCGTAAGCTTAACAGAATA 57.528 33.333 7.99 3.55 46.86 1.75
4516 9486 9.297586 TCGTAAGCTTAACAGAATATACTTGTG 57.702 33.333 7.99 0.00 37.18 3.33
4517 9487 8.056571 CGTAAGCTTAACAGAATATACTTGTGC 58.943 37.037 7.99 0.00 0.00 4.57
4520 9490 8.649973 AGCTTAACAGAATATACTTGTGCTAC 57.350 34.615 0.00 0.00 0.00 3.58
4521 9491 7.711339 AGCTTAACAGAATATACTTGTGCTACC 59.289 37.037 0.00 0.00 0.00 3.18
4522 9492 7.041984 GCTTAACAGAATATACTTGTGCTACCC 60.042 40.741 0.00 0.00 0.00 3.69
4523 9493 5.291905 ACAGAATATACTTGTGCTACCCC 57.708 43.478 0.00 0.00 0.00 4.95
4525 9495 4.038763 CAGAATATACTTGTGCTACCCCGA 59.961 45.833 0.00 0.00 0.00 5.14
4526 9496 4.652421 AGAATATACTTGTGCTACCCCGAA 59.348 41.667 0.00 0.00 0.00 4.30
4527 9497 5.129815 AGAATATACTTGTGCTACCCCGAAA 59.870 40.000 0.00 0.00 0.00 3.46
4528 9498 3.706600 ATACTTGTGCTACCCCGAAAA 57.293 42.857 0.00 0.00 0.00 2.29
4556 9532 0.034960 TGTGCAAAGCGCCCCTATAA 60.035 50.000 2.29 0.00 41.33 0.98
4560 9536 1.533129 GCAAAGCGCCCCTATAAAACG 60.533 52.381 2.29 0.00 32.94 3.60
4566 9542 1.318576 GCCCCTATAAAACGCATGCT 58.681 50.000 17.13 0.00 0.00 3.79
4569 9545 2.033299 CCCCTATAAAACGCATGCTGTG 59.967 50.000 17.13 2.44 0.00 3.66
4612 9589 4.559251 CGTTACGTCTTCTGGAATCTCTTG 59.441 45.833 0.00 0.00 0.00 3.02
4614 9591 2.900546 ACGTCTTCTGGAATCTCTTGGT 59.099 45.455 0.00 0.00 0.00 3.67
4616 9593 3.677424 CGTCTTCTGGAATCTCTTGGTCC 60.677 52.174 0.00 0.00 0.00 4.46
4617 9594 2.840651 TCTTCTGGAATCTCTTGGTCCC 59.159 50.000 0.00 0.00 0.00 4.46
4618 9595 1.584724 TCTGGAATCTCTTGGTCCCC 58.415 55.000 0.00 0.00 0.00 4.81
4619 9596 0.179000 CTGGAATCTCTTGGTCCCCG 59.821 60.000 0.00 0.00 0.00 5.73
4620 9597 0.546747 TGGAATCTCTTGGTCCCCGT 60.547 55.000 0.00 0.00 0.00 5.28
4621 9598 0.178301 GGAATCTCTTGGTCCCCGTC 59.822 60.000 0.00 0.00 0.00 4.79
4622 9599 0.178301 GAATCTCTTGGTCCCCGTCC 59.822 60.000 0.00 0.00 0.00 4.79
4653 9630 1.675641 CCCCCTCACCAAGAAAGCG 60.676 63.158 0.00 0.00 0.00 4.68
4694 9671 0.098728 CCGTCATCAAATTGGTCGCC 59.901 55.000 0.00 0.00 0.00 5.54
4695 9672 0.801872 CGTCATCAAATTGGTCGCCA 59.198 50.000 0.00 0.00 0.00 5.69
4712 9689 2.228822 CGCCAATAAGTTTGTGCTTCCT 59.771 45.455 0.00 0.00 0.00 3.36
4726 9703 5.211973 TGTGCTTCCTGATCTACCTCTAAT 58.788 41.667 0.00 0.00 0.00 1.73
4731 9708 6.266558 GCTTCCTGATCTACCTCTAATCTTCA 59.733 42.308 0.00 0.00 0.00 3.02
4732 9709 7.523709 GCTTCCTGATCTACCTCTAATCTTCAG 60.524 44.444 0.00 0.00 0.00 3.02
5150 10167 1.961394 AGAGGAACAAGCAGTACGTCA 59.039 47.619 0.00 0.00 0.00 4.35
5155 10172 2.941453 ACAAGCAGTACGTCATCGAT 57.059 45.000 0.00 0.00 40.62 3.59
5238 10255 3.303928 CGGACGATCCCTAGCCCC 61.304 72.222 0.00 0.00 31.13 5.80
5246 10263 0.578435 ATCCCTAGCCCCCTACCATT 59.422 55.000 0.00 0.00 0.00 3.16
5251 10268 1.630878 CTAGCCCCCTACCATTCATCC 59.369 57.143 0.00 0.00 0.00 3.51
5257 10274 2.422746 CCCTACCATTCATCCCTCCTT 58.577 52.381 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
434 440 2.042435 CCCTCTCTTCCCCTCGCT 60.042 66.667 0.00 0.00 0.00 4.93
469 475 2.689034 CCTTCTTCCCTCCGGCCT 60.689 66.667 0.00 0.00 0.00 5.19
536 542 4.700365 CGTCTGCGCGTGTCCTCA 62.700 66.667 8.43 0.00 0.00 3.86
624 631 1.676006 CTTTTGTCCGCTTTGTGTCCT 59.324 47.619 0.00 0.00 0.00 3.85
671 680 4.101645 TGGGATAAAAGGGACAAACGAA 57.898 40.909 0.00 0.00 0.00 3.85
712 721 3.598715 CCACCGCGCGACCCTATA 61.599 66.667 34.63 0.00 0.00 1.31
730 741 0.888619 GGCTGAAAGTTAGGCCAACC 59.111 55.000 5.01 0.00 43.59 3.77
742 753 2.692709 TCCAGGAAAATGGGCTGAAA 57.307 45.000 0.00 0.00 41.01 2.69
745 756 3.767902 TTTTTCCAGGAAAATGGGCTG 57.232 42.857 25.19 0.00 40.50 4.85
763 774 3.132111 ACACGAATGGGCTCAAAGTTTTT 59.868 39.130 0.00 0.00 0.00 1.94
764 775 2.693074 ACACGAATGGGCTCAAAGTTTT 59.307 40.909 0.00 0.00 0.00 2.43
765 776 2.034558 CACACGAATGGGCTCAAAGTTT 59.965 45.455 0.00 0.00 0.00 2.66
766 777 1.608590 CACACGAATGGGCTCAAAGTT 59.391 47.619 0.00 0.00 0.00 2.66
767 778 1.238439 CACACGAATGGGCTCAAAGT 58.762 50.000 0.00 0.00 0.00 2.66
768 779 1.197721 GACACACGAATGGGCTCAAAG 59.802 52.381 0.00 0.00 29.20 2.77
769 780 1.234821 GACACACGAATGGGCTCAAA 58.765 50.000 0.00 0.00 29.20 2.69
770 781 0.605319 GGACACACGAATGGGCTCAA 60.605 55.000 0.00 0.00 29.20 3.02
771 782 1.003839 GGACACACGAATGGGCTCA 60.004 57.895 0.00 0.00 29.20 4.26
772 783 2.100631 CGGACACACGAATGGGCTC 61.101 63.158 0.00 0.00 35.47 4.70
773 784 2.047274 CGGACACACGAATGGGCT 60.047 61.111 0.00 0.00 35.47 5.19
774 785 3.799755 GCGGACACACGAATGGGC 61.800 66.667 0.00 0.00 35.47 5.36
775 786 2.047274 AGCGGACACACGAATGGG 60.047 61.111 0.00 0.00 35.47 4.00
776 787 1.354337 CTGAGCGGACACACGAATGG 61.354 60.000 0.00 0.00 35.47 3.16
777 788 0.388520 TCTGAGCGGACACACGAATG 60.389 55.000 0.00 0.00 35.47 2.67
778 789 0.317160 TTCTGAGCGGACACACGAAT 59.683 50.000 0.00 0.00 35.47 3.34
779 790 0.596600 GTTCTGAGCGGACACACGAA 60.597 55.000 0.00 0.00 35.47 3.85
780 791 1.007734 GTTCTGAGCGGACACACGA 60.008 57.895 0.00 0.00 35.47 4.35
781 792 2.022129 GGTTCTGAGCGGACACACG 61.022 63.158 0.00 0.00 0.00 4.49
782 793 0.601558 TAGGTTCTGAGCGGACACAC 59.398 55.000 0.00 0.00 0.00 3.82
783 794 0.888619 CTAGGTTCTGAGCGGACACA 59.111 55.000 0.00 0.00 0.00 3.72
784 795 0.889306 ACTAGGTTCTGAGCGGACAC 59.111 55.000 0.00 0.00 0.00 3.67
785 796 0.888619 CACTAGGTTCTGAGCGGACA 59.111 55.000 0.00 0.00 0.00 4.02
786 797 0.458716 GCACTAGGTTCTGAGCGGAC 60.459 60.000 0.00 0.00 0.00 4.79
787 798 0.612174 AGCACTAGGTTCTGAGCGGA 60.612 55.000 0.00 0.00 0.00 5.54
788 799 0.459237 CAGCACTAGGTTCTGAGCGG 60.459 60.000 0.00 0.00 28.74 5.52
789 800 0.459237 CCAGCACTAGGTTCTGAGCG 60.459 60.000 8.99 0.00 28.74 5.03
790 801 0.107945 CCCAGCACTAGGTTCTGAGC 60.108 60.000 8.99 0.00 28.74 4.26
791 802 0.107945 GCCCAGCACTAGGTTCTGAG 60.108 60.000 8.99 0.00 28.74 3.35
792 803 1.553690 GGCCCAGCACTAGGTTCTGA 61.554 60.000 0.00 0.00 28.74 3.27
793 804 1.078143 GGCCCAGCACTAGGTTCTG 60.078 63.158 0.00 0.00 0.00 3.02
794 805 1.229658 AGGCCCAGCACTAGGTTCT 60.230 57.895 0.00 0.00 0.00 3.01
795 806 1.078143 CAGGCCCAGCACTAGGTTC 60.078 63.158 0.00 0.00 0.00 3.62
796 807 2.606587 CCAGGCCCAGCACTAGGTT 61.607 63.158 0.00 0.00 0.00 3.50
797 808 3.011517 CCAGGCCCAGCACTAGGT 61.012 66.667 0.00 0.00 0.00 3.08
798 809 2.606587 AACCAGGCCCAGCACTAGG 61.607 63.158 0.00 0.00 0.00 3.02
799 810 1.377725 CAACCAGGCCCAGCACTAG 60.378 63.158 0.00 0.00 0.00 2.57
800 811 1.715019 AACAACCAGGCCCAGCACTA 61.715 55.000 0.00 0.00 0.00 2.74
801 812 3.073599 AACAACCAGGCCCAGCACT 62.074 57.895 0.00 0.00 0.00 4.40
802 813 2.521708 AACAACCAGGCCCAGCAC 60.522 61.111 0.00 0.00 0.00 4.40
803 814 2.000825 TACAACAACCAGGCCCAGCA 62.001 55.000 0.00 0.00 0.00 4.41
804 815 0.825840 TTACAACAACCAGGCCCAGC 60.826 55.000 0.00 0.00 0.00 4.85
805 816 0.958822 GTTACAACAACCAGGCCCAG 59.041 55.000 0.00 0.00 0.00 4.45
806 817 0.259065 TGTTACAACAACCAGGCCCA 59.741 50.000 0.00 0.00 35.67 5.36
807 818 0.958822 CTGTTACAACAACCAGGCCC 59.041 55.000 0.00 0.00 38.66 5.80
808 819 0.313987 GCTGTTACAACAACCAGGCC 59.686 55.000 0.00 0.00 38.66 5.19
809 820 1.001378 CTGCTGTTACAACAACCAGGC 60.001 52.381 11.66 5.76 38.66 4.85
810 821 1.608590 CCTGCTGTTACAACAACCAGG 59.391 52.381 19.03 19.03 44.64 4.45
811 822 2.549754 CTCCTGCTGTTACAACAACCAG 59.450 50.000 12.20 12.20 38.66 4.00
812 823 2.571212 CTCCTGCTGTTACAACAACCA 58.429 47.619 0.00 0.00 38.66 3.67
813 824 1.880027 CCTCCTGCTGTTACAACAACC 59.120 52.381 0.00 0.00 38.66 3.77
814 825 2.808543 CTCCTCCTGCTGTTACAACAAC 59.191 50.000 0.00 0.00 38.66 3.32
815 826 2.224523 CCTCCTCCTGCTGTTACAACAA 60.225 50.000 0.00 0.00 38.66 2.83
816 827 1.347707 CCTCCTCCTGCTGTTACAACA 59.652 52.381 0.00 0.00 37.37 3.33
817 828 1.339151 CCCTCCTCCTGCTGTTACAAC 60.339 57.143 0.00 0.00 0.00 3.32
818 829 0.984230 CCCTCCTCCTGCTGTTACAA 59.016 55.000 0.00 0.00 0.00 2.41
819 830 1.553690 GCCCTCCTCCTGCTGTTACA 61.554 60.000 0.00 0.00 0.00 2.41
820 831 1.222113 GCCCTCCTCCTGCTGTTAC 59.778 63.158 0.00 0.00 0.00 2.50
821 832 1.995626 GGCCCTCCTCCTGCTGTTA 60.996 63.158 0.00 0.00 0.00 2.41
822 833 3.334054 GGCCCTCCTCCTGCTGTT 61.334 66.667 0.00 0.00 0.00 3.16
827 838 3.406200 CTGTGGGCCCTCCTCCTG 61.406 72.222 25.70 5.95 36.20 3.86
828 839 3.933542 GACTGTGGGCCCTCCTCCT 62.934 68.421 25.70 1.04 36.20 3.69
829 840 2.531483 TAGACTGTGGGCCCTCCTCC 62.531 65.000 25.70 10.62 36.20 4.30
830 841 0.617820 TTAGACTGTGGGCCCTCCTC 60.618 60.000 25.70 16.12 36.20 3.71
831 842 0.910088 GTTAGACTGTGGGCCCTCCT 60.910 60.000 25.70 14.43 36.20 3.69
832 843 1.602771 GTTAGACTGTGGGCCCTCC 59.397 63.158 25.70 14.46 0.00 4.30
833 844 1.218316 CGTTAGACTGTGGGCCCTC 59.782 63.158 25.70 21.33 0.00 4.30
834 845 0.251922 TACGTTAGACTGTGGGCCCT 60.252 55.000 25.70 0.66 0.00 5.19
835 846 0.175073 CTACGTTAGACTGTGGGCCC 59.825 60.000 17.59 17.59 0.00 5.80
836 847 0.459759 GCTACGTTAGACTGTGGGCC 60.460 60.000 0.00 0.00 0.00 5.80
837 848 0.531200 AGCTACGTTAGACTGTGGGC 59.469 55.000 0.00 0.00 0.00 5.36
838 849 1.135083 CCAGCTACGTTAGACTGTGGG 60.135 57.143 0.00 0.00 32.04 4.61
839 850 1.135083 CCCAGCTACGTTAGACTGTGG 60.135 57.143 0.00 0.00 32.04 4.17
840 851 1.736032 GCCCAGCTACGTTAGACTGTG 60.736 57.143 0.00 0.00 32.04 3.66
841 852 0.531200 GCCCAGCTACGTTAGACTGT 59.469 55.000 0.00 0.00 32.04 3.55
842 853 0.818296 AGCCCAGCTACGTTAGACTG 59.182 55.000 0.00 0.00 36.99 3.51
843 854 1.204941 CAAGCCCAGCTACGTTAGACT 59.795 52.381 0.00 0.00 38.25 3.24
844 855 1.641577 CAAGCCCAGCTACGTTAGAC 58.358 55.000 0.00 0.00 38.25 2.59
845 856 0.535335 CCAAGCCCAGCTACGTTAGA 59.465 55.000 0.00 0.00 38.25 2.10
846 857 0.462047 CCCAAGCCCAGCTACGTTAG 60.462 60.000 0.00 0.00 38.25 2.34
847 858 1.600107 CCCAAGCCCAGCTACGTTA 59.400 57.895 0.00 0.00 38.25 3.18
848 859 2.351276 CCCAAGCCCAGCTACGTT 59.649 61.111 0.00 0.00 38.25 3.99
849 860 4.410400 GCCCAAGCCCAGCTACGT 62.410 66.667 0.00 0.00 38.25 3.57
850 861 4.408821 TGCCCAAGCCCAGCTACG 62.409 66.667 0.00 0.00 38.25 3.51
851 862 2.439156 CTGCCCAAGCCCAGCTAC 60.439 66.667 0.00 0.00 38.25 3.58
852 863 2.935481 ACTGCCCAAGCCCAGCTA 60.935 61.111 0.00 0.00 38.25 3.32
853 864 4.357279 GACTGCCCAAGCCCAGCT 62.357 66.667 0.00 0.00 42.56 4.24
854 865 2.971598 TAGACTGCCCAAGCCCAGC 61.972 63.158 0.00 0.00 38.69 4.85
855 866 1.078143 GTAGACTGCCCAAGCCCAG 60.078 63.158 0.00 0.00 38.69 4.45
856 867 1.845664 TGTAGACTGCCCAAGCCCA 60.846 57.895 0.00 0.00 38.69 5.36
857 868 1.377333 GTGTAGACTGCCCAAGCCC 60.377 63.158 0.00 0.00 38.69 5.19
858 869 0.391793 GAGTGTAGACTGCCCAAGCC 60.392 60.000 0.00 0.00 38.69 4.35
859 870 0.391793 GGAGTGTAGACTGCCCAAGC 60.392 60.000 0.00 0.00 34.53 4.01
860 871 0.976641 TGGAGTGTAGACTGCCCAAG 59.023 55.000 9.09 0.00 39.75 3.61
861 872 0.976641 CTGGAGTGTAGACTGCCCAA 59.023 55.000 9.09 0.00 39.75 4.12
862 873 0.904865 CCTGGAGTGTAGACTGCCCA 60.905 60.000 9.09 4.81 39.75 5.36
863 874 1.901085 CCTGGAGTGTAGACTGCCC 59.099 63.158 9.09 0.00 39.75 5.36
864 875 1.219393 GCCTGGAGTGTAGACTGCC 59.781 63.158 9.09 5.48 39.75 4.85
865 876 1.153745 CGCCTGGAGTGTAGACTGC 60.154 63.158 4.43 4.43 40.86 4.40
866 877 0.109086 CACGCCTGGAGTGTAGACTG 60.109 60.000 20.73 0.00 36.98 3.51
867 878 1.878656 GCACGCCTGGAGTGTAGACT 61.879 60.000 27.48 0.00 41.36 3.24
868 879 1.446272 GCACGCCTGGAGTGTAGAC 60.446 63.158 27.48 10.62 41.36 2.59
869 880 2.970639 GCACGCCTGGAGTGTAGA 59.029 61.111 27.48 0.00 41.36 2.59
870 881 2.507102 CGCACGCCTGGAGTGTAG 60.507 66.667 27.48 19.24 41.36 2.74
871 882 4.735132 GCGCACGCCTGGAGTGTA 62.735 66.667 27.48 0.00 41.36 2.90
963 981 2.262915 CGTTGGCTTCTCCGAGCT 59.737 61.111 0.00 0.00 42.32 4.09
964 982 3.491652 GCGTTGGCTTCTCCGAGC 61.492 66.667 0.00 0.00 41.96 5.03
1023 1041 1.551883 GTCGTTGCCTAGGGTTTCCTA 59.448 52.381 11.72 0.00 44.38 2.94
1353 1377 3.695606 ATGCAGTCGGACTGGCGT 61.696 61.111 32.63 23.86 46.01 5.68
1484 1508 0.319125 CTTCCGAGATCTAAGCGGGC 60.319 60.000 18.30 0.00 44.87 6.13
1543 1567 7.376866 ACAGCGAATTCAATAAATATTTGAGCG 59.623 33.333 11.05 6.98 0.00 5.03
1624 1648 7.360361 GGGAACAAGAACTTTGTACACTATTG 58.640 38.462 0.00 0.00 31.50 1.90
1625 1649 6.489022 GGGGAACAAGAACTTTGTACACTATT 59.511 38.462 0.00 0.00 31.50 1.73
1626 1650 6.002082 GGGGAACAAGAACTTTGTACACTAT 58.998 40.000 0.00 0.00 31.50 2.12
1685 1712 2.336554 TGTTAGTACGAGCGGTGTTC 57.663 50.000 0.00 0.00 0.00 3.18
1686 1713 2.223782 TGTTGTTAGTACGAGCGGTGTT 60.224 45.455 0.00 0.00 0.00 3.32
1688 1715 2.054687 TGTTGTTAGTACGAGCGGTG 57.945 50.000 0.00 0.00 0.00 4.94
1689 1716 3.308438 AATGTTGTTAGTACGAGCGGT 57.692 42.857 0.00 0.00 0.00 5.68
1690 1717 4.435121 GGAAAATGTTGTTAGTACGAGCGG 60.435 45.833 0.00 0.00 0.00 5.52
1704 1733 6.496565 TCAAATACACAGATGGGGAAAATGTT 59.503 34.615 0.00 0.00 0.00 2.71
1705 1734 6.015918 TCAAATACACAGATGGGGAAAATGT 58.984 36.000 0.00 0.00 0.00 2.71
1853 1882 7.874528 CAGGCTTGTAGTCATGATGTATTGATA 59.125 37.037 0.00 0.00 0.00 2.15
1933 1962 7.722949 ATTCCTTTCAGATTCAATTGGCTTA 57.277 32.000 5.42 0.00 0.00 3.09
1934 1963 6.616237 ATTCCTTTCAGATTCAATTGGCTT 57.384 33.333 5.42 0.00 0.00 4.35
1935 1964 6.439692 AGAATTCCTTTCAGATTCAATTGGCT 59.560 34.615 5.42 0.00 36.75 4.75
1936 1965 6.637657 AGAATTCCTTTCAGATTCAATTGGC 58.362 36.000 5.42 0.00 36.75 4.52
1937 1966 7.064253 GCAAGAATTCCTTTCAGATTCAATTGG 59.936 37.037 5.42 0.00 36.75 3.16
1956 1987 3.070015 CCCACAAAGGTTTGAGCAAGAAT 59.930 43.478 9.42 0.00 40.55 2.40
2097 2132 6.712276 ACAGATAGTGAAAAAGGACTTAGGG 58.288 40.000 0.00 0.00 0.00 3.53
2115 2150 7.770433 CAGGTCTCCAAATCAAATACACAGATA 59.230 37.037 0.00 0.00 0.00 1.98
2261 2297 2.821546 ACATGCTTGCAATCATGATGC 58.178 42.857 36.93 20.52 41.82 3.91
2334 2378 3.048600 AGCCATGCAGGGAAGATACTTA 58.951 45.455 24.18 0.00 38.09 2.24
2349 2393 4.216902 TGTTGTGAAATCTCTTCAGCCATG 59.783 41.667 0.00 0.00 0.00 3.66
2642 5039 2.334977 TGTCCCACTCTCTTGGCTAAA 58.665 47.619 0.00 0.00 35.00 1.85
2749 5355 6.017934 ACTGTGTCAATGTGCTAAACTACTTG 60.018 38.462 0.00 0.00 0.00 3.16
2789 5590 8.778358 AGCATGTTTTTCTGAGAAGTAAGTTAG 58.222 33.333 0.00 0.00 0.00 2.34
2790 5591 8.559536 CAGCATGTTTTTCTGAGAAGTAAGTTA 58.440 33.333 0.00 0.00 0.00 2.24
2791 5592 7.420800 CAGCATGTTTTTCTGAGAAGTAAGTT 58.579 34.615 0.00 0.00 0.00 2.66
2792 5593 6.963796 CAGCATGTTTTTCTGAGAAGTAAGT 58.036 36.000 0.00 0.00 0.00 2.24
2901 6707 3.418022 TGCATTTCACTGTGCAGGA 57.582 47.368 2.12 0.00 45.60 3.86
2913 6719 1.884579 CAACACAGCCTCTCTGCATTT 59.115 47.619 0.00 0.00 46.76 2.32
3488 7312 9.851686 TCCTCTGATTAATAATGTAAGCATTGT 57.148 29.630 3.39 0.00 44.32 2.71
3599 8001 6.688073 ATTATGGAACGGAGGACAGATAAT 57.312 37.500 0.00 0.00 0.00 1.28
3607 8009 5.174037 ACTTCAAATTATGGAACGGAGGA 57.826 39.130 0.00 0.00 0.00 3.71
3628 8030 7.136289 TCCATAATTCTTGTCGTGGTTTTAC 57.864 36.000 0.00 0.00 0.00 2.01
3656 8063 7.288158 CCATACTAAGAAGCTAAGTACTCCCTT 59.712 40.741 0.00 0.00 0.00 3.95
3899 8804 7.338957 ACAACAGAGTAGGAGTAGTGGTAATAC 59.661 40.741 0.00 0.00 0.00 1.89
3902 8807 5.475909 CACAACAGAGTAGGAGTAGTGGTAA 59.524 44.000 0.00 0.00 0.00 2.85
4073 8978 2.618241 CAAGCCAGAACAGTAACAAGCA 59.382 45.455 0.00 0.00 0.00 3.91
4075 8980 4.900635 AACAAGCCAGAACAGTAACAAG 57.099 40.909 0.00 0.00 0.00 3.16
4117 9022 5.065731 GGTCCTTATTTCAGTTGATGAGCAG 59.934 44.000 0.00 0.00 39.68 4.24
4118 9023 4.943705 GGTCCTTATTTCAGTTGATGAGCA 59.056 41.667 0.00 0.00 39.68 4.26
4119 9024 5.189180 AGGTCCTTATTTCAGTTGATGAGC 58.811 41.667 0.00 0.00 39.68 4.26
4120 9025 6.656693 ACAAGGTCCTTATTTCAGTTGATGAG 59.343 38.462 3.08 0.00 39.68 2.90
4121 9026 6.430925 CACAAGGTCCTTATTTCAGTTGATGA 59.569 38.462 3.08 0.00 35.62 2.92
4122 9027 6.615088 CACAAGGTCCTTATTTCAGTTGATG 58.385 40.000 3.08 0.00 0.00 3.07
4123 9028 5.183904 GCACAAGGTCCTTATTTCAGTTGAT 59.816 40.000 3.08 0.00 0.00 2.57
4124 9029 4.518970 GCACAAGGTCCTTATTTCAGTTGA 59.481 41.667 3.08 0.00 0.00 3.18
4125 9030 4.520492 AGCACAAGGTCCTTATTTCAGTTG 59.480 41.667 3.08 0.00 0.00 3.16
4126 9031 4.729868 AGCACAAGGTCCTTATTTCAGTT 58.270 39.130 3.08 0.00 0.00 3.16
4141 9046 1.771073 TTTGCACGTCCGAGCACAAG 61.771 55.000 11.20 0.00 41.06 3.16
4165 9070 1.674764 CCCAGGCACAACAACAGCAA 61.675 55.000 0.00 0.00 0.00 3.91
4166 9071 2.126596 CCCAGGCACAACAACAGCA 61.127 57.895 0.00 0.00 0.00 4.41
4167 9072 1.799258 CTCCCAGGCACAACAACAGC 61.799 60.000 0.00 0.00 0.00 4.40
4168 9073 1.174712 CCTCCCAGGCACAACAACAG 61.175 60.000 0.00 0.00 0.00 3.16
4170 9075 0.251341 ATCCTCCCAGGCACAACAAC 60.251 55.000 0.00 0.00 34.61 3.32
4171 9076 0.251297 CATCCTCCCAGGCACAACAA 60.251 55.000 0.00 0.00 34.61 2.83
4173 9078 0.618458 TACATCCTCCCAGGCACAAC 59.382 55.000 0.00 0.00 34.61 3.32
4184 9089 2.032681 GCCCGGGCATACATCCTC 59.967 66.667 40.73 6.07 41.49 3.71
4185 9090 2.448542 AGCCCGGGCATACATCCT 60.449 61.111 45.13 21.51 44.88 3.24
4216 9121 1.211969 CACCAGGTACACGAGTCCG 59.788 63.158 0.00 0.00 42.50 4.79
4229 9134 4.370364 AAAACAGTTACAGCAACACCAG 57.630 40.909 0.00 0.00 39.81 4.00
4276 9181 2.169663 TCTTACACGACGAAGCGATC 57.830 50.000 0.00 0.00 34.83 3.69
4279 9184 3.120616 TGAAATTCTTACACGACGAAGCG 59.879 43.478 0.00 0.00 37.29 4.68
4280 9185 4.629065 CTGAAATTCTTACACGACGAAGC 58.371 43.478 0.00 0.00 0.00 3.86
4287 9192 4.466828 CACTTGGCTGAAATTCTTACACG 58.533 43.478 0.00 0.00 0.00 4.49
4288 9193 4.229876 GCACTTGGCTGAAATTCTTACAC 58.770 43.478 0.00 0.00 40.25 2.90
4290 9195 4.503741 TGCACTTGGCTGAAATTCTTAC 57.496 40.909 0.00 0.00 45.15 2.34
4291 9196 5.726980 ATTGCACTTGGCTGAAATTCTTA 57.273 34.783 0.00 0.00 45.15 2.10
4292 9197 4.612264 ATTGCACTTGGCTGAAATTCTT 57.388 36.364 0.00 0.00 45.15 2.52
4293 9198 4.039488 TCAATTGCACTTGGCTGAAATTCT 59.961 37.500 15.87 0.00 45.15 2.40
4294 9199 4.309099 TCAATTGCACTTGGCTGAAATTC 58.691 39.130 15.87 0.00 45.15 2.17
4295 9200 4.312443 CTCAATTGCACTTGGCTGAAATT 58.688 39.130 15.87 0.00 45.15 1.82
4296 9201 3.863400 GCTCAATTGCACTTGGCTGAAAT 60.863 43.478 15.87 0.00 45.15 2.17
4297 9202 2.546373 GCTCAATTGCACTTGGCTGAAA 60.546 45.455 15.87 0.00 45.15 2.69
4298 9203 1.000060 GCTCAATTGCACTTGGCTGAA 60.000 47.619 15.87 0.00 45.15 3.02
4299 9204 0.599558 GCTCAATTGCACTTGGCTGA 59.400 50.000 15.87 0.00 45.15 4.26
4300 9205 0.315886 TGCTCAATTGCACTTGGCTG 59.684 50.000 21.70 12.89 45.15 4.85
4301 9206 2.736197 TGCTCAATTGCACTTGGCT 58.264 47.368 21.70 0.00 45.15 4.75
4308 9213 4.271661 TGATATGGAAGTGCTCAATTGCA 58.728 39.130 6.71 6.71 40.65 4.08
4309 9214 4.906065 TGATATGGAAGTGCTCAATTGC 57.094 40.909 0.00 0.00 0.00 3.56
4310 9215 8.600625 CAAAAATGATATGGAAGTGCTCAATTG 58.399 33.333 0.00 0.00 0.00 2.32
4311 9216 7.279313 GCAAAAATGATATGGAAGTGCTCAATT 59.721 33.333 0.00 0.00 0.00 2.32
4312 9217 6.759827 GCAAAAATGATATGGAAGTGCTCAAT 59.240 34.615 0.00 0.00 0.00 2.57
4313 9218 6.101332 GCAAAAATGATATGGAAGTGCTCAA 58.899 36.000 0.00 0.00 0.00 3.02
4314 9219 5.185442 TGCAAAAATGATATGGAAGTGCTCA 59.815 36.000 0.00 0.00 0.00 4.26
4315 9220 5.653507 TGCAAAAATGATATGGAAGTGCTC 58.346 37.500 0.00 0.00 0.00 4.26
4316 9221 5.664294 TGCAAAAATGATATGGAAGTGCT 57.336 34.783 0.00 0.00 0.00 4.40
4317 9222 6.044046 TCATGCAAAAATGATATGGAAGTGC 58.956 36.000 0.00 0.00 31.58 4.40
4318 9223 7.923878 TCATCATGCAAAAATGATATGGAAGTG 59.076 33.333 0.33 0.00 43.83 3.16
4319 9224 8.014070 TCATCATGCAAAAATGATATGGAAGT 57.986 30.769 0.33 0.00 43.83 3.01
4320 9225 8.925700 CATCATCATGCAAAAATGATATGGAAG 58.074 33.333 16.74 5.26 43.83 3.46
4321 9226 8.825667 CATCATCATGCAAAAATGATATGGAA 57.174 30.769 16.74 0.00 43.83 3.53
4359 9264 3.688185 TGACGTAGACATGTCCTGTACTC 59.312 47.826 22.21 15.41 39.56 2.59
4360 9265 3.682696 TGACGTAGACATGTCCTGTACT 58.317 45.455 22.21 5.25 39.56 2.73
4361 9266 4.095932 TGATGACGTAGACATGTCCTGTAC 59.904 45.833 22.21 16.18 43.78 2.90
4362 9267 4.266714 TGATGACGTAGACATGTCCTGTA 58.733 43.478 22.21 5.72 43.78 2.74
4363 9268 3.089284 TGATGACGTAGACATGTCCTGT 58.911 45.455 22.21 17.22 43.78 4.00
4364 9269 3.782889 TGATGACGTAGACATGTCCTG 57.217 47.619 22.21 14.18 43.78 3.86
4365 9270 3.954258 TCATGATGACGTAGACATGTCCT 59.046 43.478 22.21 11.95 43.78 3.85
4367 9272 6.643845 CAAATCATGATGACGTAGACATGTC 58.356 40.000 18.47 18.47 43.78 3.06
4374 9341 4.581493 GTGTGCAAATCATGATGACGTAG 58.419 43.478 9.46 0.00 0.00 3.51
4412 9379 3.976169 TCGGAAGTTTGGAGCAAATTTG 58.024 40.909 14.03 14.03 34.37 2.32
4413 9380 3.005791 CCTCGGAAGTTTGGAGCAAATTT 59.994 43.478 0.00 0.00 36.32 1.82
4414 9381 2.558359 CCTCGGAAGTTTGGAGCAAATT 59.442 45.455 0.00 0.00 35.74 1.82
4417 9384 0.250727 CCCTCGGAAGTTTGGAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
4431 9398 1.089920 CACAAGATTTGGAGCCCTCG 58.910 55.000 0.00 0.00 34.12 4.63
4432 9399 0.813821 GCACAAGATTTGGAGCCCTC 59.186 55.000 0.00 0.00 34.12 4.30
4436 9403 0.599558 TGCAGCACAAGATTTGGAGC 59.400 50.000 0.00 0.00 36.47 4.70
4473 9440 5.009210 GCTTACGATTACATCCAGAGAGACT 59.991 44.000 0.00 0.00 0.00 3.24
4475 9442 5.133941 AGCTTACGATTACATCCAGAGAGA 58.866 41.667 0.00 0.00 0.00 3.10
4476 9443 5.446143 AGCTTACGATTACATCCAGAGAG 57.554 43.478 0.00 0.00 0.00 3.20
4477 9444 5.854010 AAGCTTACGATTACATCCAGAGA 57.146 39.130 0.00 0.00 0.00 3.10
4478 9445 6.978659 TGTTAAGCTTACGATTACATCCAGAG 59.021 38.462 5.45 0.00 0.00 3.35
4480 9447 6.978659 TCTGTTAAGCTTACGATTACATCCAG 59.021 38.462 5.45 0.00 0.00 3.86
4482 9449 7.766219 TTCTGTTAAGCTTACGATTACATCC 57.234 36.000 5.45 0.00 0.00 3.51
4495 9465 7.711339 GGTAGCACAAGTATATTCTGTTAAGCT 59.289 37.037 0.00 0.00 0.00 3.74
4502 9472 4.038763 TCGGGGTAGCACAAGTATATTCTG 59.961 45.833 0.00 0.00 0.00 3.02
4503 9473 4.220724 TCGGGGTAGCACAAGTATATTCT 58.779 43.478 0.00 0.00 0.00 2.40
4505 9475 5.362105 TTTCGGGGTAGCACAAGTATATT 57.638 39.130 0.00 0.00 0.00 1.28
4508 9478 3.706600 TTTTCGGGGTAGCACAAGTAT 57.293 42.857 0.00 0.00 0.00 2.12
4556 9532 3.683937 GGCCCACAGCATGCGTTT 61.684 61.111 13.01 0.00 46.50 3.60
4560 9536 3.508840 GTACGGCCCACAGCATGC 61.509 66.667 10.51 10.51 46.50 4.06
4586 9563 1.774639 TTCCAGAAGACGTAACGCAC 58.225 50.000 0.00 0.00 0.00 5.34
4596 9573 2.840651 GGGACCAAGAGATTCCAGAAGA 59.159 50.000 0.00 0.00 0.00 2.87
4619 9596 1.303074 GGGTTTGAAGGACGGGGAC 60.303 63.158 0.00 0.00 0.00 4.46
4620 9597 2.531601 GGGGTTTGAAGGACGGGGA 61.532 63.158 0.00 0.00 0.00 4.81
4621 9598 2.035155 GGGGTTTGAAGGACGGGG 59.965 66.667 0.00 0.00 0.00 5.73
4622 9599 2.035155 GGGGGTTTGAAGGACGGG 59.965 66.667 0.00 0.00 0.00 5.28
4630 9607 1.227249 TTCTTGGTGAGGGGGTTTGA 58.773 50.000 0.00 0.00 0.00 2.69
4653 9630 1.666872 CGTTGGTCGGTTCACCTCC 60.667 63.158 0.00 0.00 37.34 4.30
4694 9671 6.506500 AGATCAGGAAGCACAAACTTATTG 57.493 37.500 0.00 0.00 0.00 1.90
4695 9672 6.599638 GGTAGATCAGGAAGCACAAACTTATT 59.400 38.462 0.00 0.00 0.00 1.40
4696 9673 6.069963 AGGTAGATCAGGAAGCACAAACTTAT 60.070 38.462 0.00 0.00 0.00 1.73
4697 9674 5.248477 AGGTAGATCAGGAAGCACAAACTTA 59.752 40.000 0.00 0.00 0.00 2.24
4698 9675 4.042187 AGGTAGATCAGGAAGCACAAACTT 59.958 41.667 0.00 0.00 0.00 2.66
4712 9689 5.772672 GGAGCTGAAGATTAGAGGTAGATCA 59.227 44.000 0.00 0.00 0.00 2.92
4894 9911 3.426568 GACGCCTTGGACTGCAGC 61.427 66.667 15.27 6.61 0.00 5.25
5150 10167 3.912907 GACGGTGGGCGGATCGAT 61.913 66.667 0.00 0.00 0.00 3.59
5155 10172 3.869473 CTTTTCGACGGTGGGCGGA 62.869 63.158 0.00 0.00 0.00 5.54
5197 10214 2.263540 GCGAGGCGGGTGTAGAAA 59.736 61.111 0.00 0.00 0.00 2.52
5238 10255 3.825328 CAAAGGAGGGATGAATGGTAGG 58.175 50.000 0.00 0.00 0.00 3.18
5246 10263 0.914644 CAGGAGCAAAGGAGGGATGA 59.085 55.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.