AutoCloner

Multiple sequence alignment - TraesCS3B01G321900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G321900	chr3B	100.000	3398	0	0	1	3398	521414278	521410881	0.000000e+00	6276
1	TraesCS3B01G321900	chr3B	94.702	1944	67	6	1490	3398	726425334	726427276	0.000000e+00	2987
2	TraesCS3B01G321900	chr3B	93.857	1172	45	5	2240	3398	13545487	13546644	0.000000e+00	1740
3	TraesCS3B01G321900	chr3B	92.821	1184	33	7	2240	3398	13517463	13518619	0.000000e+00	1668
4	TraesCS3B01G321900	chr3B	96.195	841	30	2	660	1499	13529176	13530015	0.000000e+00	1375
5	TraesCS3B01G321900	chr3B	95.482	841	37	1	660	1499	726424352	726425192	0.000000e+00	1341
6	TraesCS3B01G321900	chr3B	94.306	843	31	5	660	1499	13510173	13511001	0.000000e+00	1275
7	TraesCS3B01G321900	chr3B	95.202	667	19	9	1	660	521477580	521476920	0.000000e+00	1042
8	TraesCS3B01G321900	chr3B	89.770	391	25	7	281	660	521689154	521688768	1.420000e-133	486
9	TraesCS3B01G321900	chr3B	96.694	242	6	1	419	660	521610584	521610345	5.280000e-108	401
10	TraesCS3B01G321900	chr3B	96.000	200	8	0	461	660	521218021	521217822	3.270000e-85	326
11	TraesCS3B01G321900	chr3B	95.652	138	3	1	161	298	521610892	521610758	5.710000e-53	219
12	TraesCS3B01G321900	chr3B	86.458	96	8	4	332	422	521610760	521610665	2.160000e-17	100
13	TraesCS3B01G321900	chr2A	98.833	2741	31	1	659	3398	704020264	704017524	0.000000e+00	4883
14	TraesCS3B01G321900	chr2A	90.611	1374	67	19	1496	2837	38506379	38505036	0.000000e+00	1766
15	TraesCS3B01G321900	chr1B	96.058	1928	36	9	1496	3398	539848962	539847050	0.000000e+00	3103
16	TraesCS3B01G321900	chr1B	96.580	848	21	3	660	1505	539849942	539849101	0.000000e+00	1399
17	TraesCS3B01G321900	chr1B	89.179	1072	70	15	2095	3139	548829398	548828346	0.000000e+00	1295
18	TraesCS3B01G321900	chr1B	88.525	122	11	3	1	121	11895455	11895574	9.830000e-31	145
19	TraesCS3B01G321900	chr7D	91.949	1950	93	18	1490	3398	525734703	525736629	0.000000e+00	2673
20	TraesCS3B01G321900	chr1D	91.354	1943	102	22	1496	3398	42896270	42894354	0.000000e+00	2597
21	TraesCS3B01G321900	chr4D	91.087	1941	100	29	1490	3398	108843178	108845077	0.000000e+00	2558
22	TraesCS3B01G321900	chr4D	89.468	864	77	8	645	1499	108842208	108843066	0.000000e+00	1079
23	TraesCS3B01G321900	chr4D	88.073	109	12	1	1	108	438708094	438707986	9.900000e-26	128
24	TraesCS3B01G321900	chr3D	91.012	1947	93	29	1496	3398	594953964	594952056	0.000000e+00	2551
25	TraesCS3B01G321900	chr3D	90.862	1948	100	31	1490	3398	590154271	590156179	0.000000e+00	2540
26	TraesCS3B01G321900	chr3D	89.293	523	28	6	161	660	395838533	395838016	6.190000e-177	630
27	TraesCS3B01G321900	chr3D	88.132	514	39	15	165	660	396206348	396205839	2.920000e-165	592
28	TraesCS3B01G321900	chr3D	91.268	355	15	5	321	660	395833983	395833630	1.430000e-128	470
29	TraesCS3B01G321900	chr3D	89.552	134	5	6	161	293	395834823	395834698	9.760000e-36	161
30	TraesCS3B01G321900	chr5A	90.611	1736	97	15	1490	3181	634625129	634626842	0.000000e+00	2242
31	TraesCS3B01G321900	chr4A	87.545	1935	148	28	1515	3398	85531161	85529269	0.000000e+00	2152
32	TraesCS3B01G321900	chr4A	88.679	106	10	1	3	108	393763227	393763330	9.900000e-26	128
33	TraesCS3B01G321900	chr6B	86.044	1691	180	20	1490	3148	417302698	417304364	0.000000e+00	1764
34	TraesCS3B01G321900	chr2B	89.273	1100	65	13	2331	3396	80549093	80548013	0.000000e+00	1328
35	TraesCS3B01G321900	chr2B	91.211	842	59	6	660	1499	80552660	80551832	0.000000e+00	1131
36	TraesCS3B01G321900	chr6A	89.990	1009	71	10	2401	3398	116691948	116692937	0.000000e+00	1277
37	TraesCS3B01G321900	chr5D	92.399	842	50	6	660	1499	388593173	388594002	0.000000e+00	1188
38	TraesCS3B01G321900	chr5D	89.720	107	9	2	1	107	404570455	404570559	5.910000e-28	135
39	TraesCS3B01G321900	chr5D	88.785	107	10	2	2	107	546569971	546570076	2.750000e-26	130
40	TraesCS3B01G321900	chr6D	91.758	825	52	8	660	1481	45675922	45676733	0.000000e+00	1133
41	TraesCS3B01G321900	chr5B	90.416	866	57	8	2401	3263	418360590	418359748	0.000000e+00	1116
42	TraesCS3B01G321900	chr3A	90.281	463	28	10	210	660	515862340	515861883	1.050000e-164	590
43	TraesCS3B01G321900	chr7B	87.395	119	15	0	1	119	741497682	741497800	1.640000e-28	137
44	TraesCS3B01G321900	chr2D	88.889	108	12	0	1	108	620917414	620917307	2.130000e-27	134
45	TraesCS3B01G321900	chr1A	88.182	110	11	2	1	108	262296163	262296272	2.750000e-26	130

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G321900	chr3B	521410881	521414278	3397	True	6276.000000	6276	100.000000	1	3398	1	chr3B.!!$R2	3397
1	TraesCS3B01G321900	chr3B	726424352	726427276	2924	False	2164.000000	2987	95.092000	660	3398	2	chr3B.!!$F5	2738
2	TraesCS3B01G321900	chr3B	13545487	13546644	1157	False	1740.000000	1740	93.857000	2240	3398	1	chr3B.!!$F4	1158
3	TraesCS3B01G321900	chr3B	13517463	13518619	1156	False	1668.000000	1668	92.821000	2240	3398	1	chr3B.!!$F2	1158
4	TraesCS3B01G321900	chr3B	13529176	13530015	839	False	1375.000000	1375	96.195000	660	1499	1	chr3B.!!$F3	839
5	TraesCS3B01G321900	chr3B	13510173	13511001	828	False	1275.000000	1275	94.306000	660	1499	1	chr3B.!!$F1	839
6	TraesCS3B01G321900	chr3B	521476920	521477580	660	True	1042.000000	1042	95.202000	1	660	1	chr3B.!!$R3	659
7	TraesCS3B01G321900	chr3B	521610345	521610892	547	True	240.000000	401	92.934667	161	660	3	chr3B.!!$R5	499
8	TraesCS3B01G321900	chr2A	704017524	704020264	2740	True	4883.000000	4883	98.833000	659	3398	1	chr2A.!!$R2	2739
9	TraesCS3B01G321900	chr2A	38505036	38506379	1343	True	1766.000000	1766	90.611000	1496	2837	1	chr2A.!!$R1	1341
10	TraesCS3B01G321900	chr1B	539847050	539849942	2892	True	2251.000000	3103	96.319000	660	3398	2	chr1B.!!$R2	2738
11	TraesCS3B01G321900	chr1B	548828346	548829398	1052	True	1295.000000	1295	89.179000	2095	3139	1	chr1B.!!$R1	1044
12	TraesCS3B01G321900	chr7D	525734703	525736629	1926	False	2673.000000	2673	91.949000	1490	3398	1	chr7D.!!$F1	1908
13	TraesCS3B01G321900	chr1D	42894354	42896270	1916	True	2597.000000	2597	91.354000	1496	3398	1	chr1D.!!$R1	1902
14	TraesCS3B01G321900	chr4D	108842208	108845077	2869	False	1818.500000	2558	90.277500	645	3398	2	chr4D.!!$F1	2753
15	TraesCS3B01G321900	chr3D	594952056	594953964	1908	True	2551.000000	2551	91.012000	1496	3398	1	chr3D.!!$R2	1902
16	TraesCS3B01G321900	chr3D	590154271	590156179	1908	False	2540.000000	2540	90.862000	1490	3398	1	chr3D.!!$F1	1908
17	TraesCS3B01G321900	chr3D	396205839	396206348	509	True	592.000000	592	88.132000	165	660	1	chr3D.!!$R1	495
18	TraesCS3B01G321900	chr3D	395833630	395838533	4903	True	420.333333	630	90.037667	161	660	3	chr3D.!!$R3	499
19	TraesCS3B01G321900	chr5A	634625129	634626842	1713	False	2242.000000	2242	90.611000	1490	3181	1	chr5A.!!$F1	1691
20	TraesCS3B01G321900	chr4A	85529269	85531161	1892	True	2152.000000	2152	87.545000	1515	3398	1	chr4A.!!$R1	1883
21	TraesCS3B01G321900	chr6B	417302698	417304364	1666	False	1764.000000	1764	86.044000	1490	3148	1	chr6B.!!$F1	1658
22	TraesCS3B01G321900	chr2B	80548013	80552660	4647	True	1229.500000	1328	90.242000	660	3396	2	chr2B.!!$R1	2736
23	TraesCS3B01G321900	chr6A	116691948	116692937	989	False	1277.000000	1277	89.990000	2401	3398	1	chr6A.!!$F1	997
24	TraesCS3B01G321900	chr5D	388593173	388594002	829	False	1188.000000	1188	92.399000	660	1499	1	chr5D.!!$F1	839
25	TraesCS3B01G321900	chr6D	45675922	45676733	811	False	1133.000000	1133	91.758000	660	1481	1	chr6D.!!$F1	821
26	TraesCS3B01G321900	chr5B	418359748	418360590	842	True	1116.000000	1116	90.416000	2401	3263	1	chr5B.!!$R1	862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
423	453	0.174162	CCCTACCCAAACTCGTACGG	59.826	60.0	16.52	8.79	0.0	4.02	F
653	767	0.460987	GCGTCTCCTCCATGTCCTTG	60.461	60.0	0.00	0.00	0.0	3.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1301	2465	1.750778	CAGTGACAAGCCCACAAAAGT	59.249	47.619	0.0	0.0	37.01	2.66	R
2940	7539	1.004277	GGACCAGCAGTATGGAAACCA	59.996	52.381	0.0	0.0	43.57	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	7.878127	GGGCAGTAGCTACAAATTATGAGATTA	59.122	37.037	25.28	0.00	41.70	1.75
75	76	5.856126	TTCTGTAAATTAAGAGCGTGTGG	57.144	39.130	0.00	0.00	0.00	4.17
112	113	2.124570	AATGCACGGGCCTGCTAG	60.125	61.111	22.57	2.81	40.13	3.42
120	121	1.108776	CGGGCCTGCTAGTTAGTACA	58.891	55.000	0.84	0.00	0.00	2.90
150	151	9.745323	GTTGCATTTACATAAGAAGAAAATTGC	57.255	29.630	0.00	0.00	0.00	3.56
261	264	3.416119	TCGTCGGATCAACTCATGTAC	57.584	47.619	0.00	0.00	0.00	2.90
423	453	0.174162	CCCTACCCAAACTCGTACGG	59.826	60.000	16.52	8.79	0.00	4.02
574	688	4.785512	CGGCAGCGACTCGAGCTT	62.786	66.667	13.61	0.00	44.06	3.74
575	689	3.184683	GGCAGCGACTCGAGCTTG	61.185	66.667	13.61	7.00	44.06	4.01
576	690	3.847709	GCAGCGACTCGAGCTTGC	61.848	66.667	13.61	14.01	44.06	4.01
577	691	2.431430	CAGCGACTCGAGCTTGCA	60.431	61.111	21.43	0.00	44.06	4.08
578	692	2.126149	AGCGACTCGAGCTTGCAG	60.126	61.111	21.43	6.10	43.24	4.41
579	693	2.431601	GCGACTCGAGCTTGCAGT	60.432	61.111	13.61	0.88	0.00	4.40
580	694	2.440569	GCGACTCGAGCTTGCAGTC	61.441	63.158	13.61	17.20	34.36	3.51
581	695	3.760673	GACTCGAGCTTGCAGTCG	58.239	61.111	13.61	8.46	37.54	4.18
582	696	1.210413	GACTCGAGCTTGCAGTCGA	59.790	57.895	13.61	14.73	42.74	4.20
606	720	3.456365	GCAGCTGGCTCTCCTCGA	61.456	66.667	17.12	0.00	40.25	4.04
607	721	2.493973	CAGCTGGCTCTCCTCGAC	59.506	66.667	5.57	0.00	0.00	4.20
608	722	3.137459	AGCTGGCTCTCCTCGACG	61.137	66.667	0.00	0.00	0.00	5.12
609	723	3.134792	GCTGGCTCTCCTCGACGA	61.135	66.667	0.00	0.00	0.00	4.20
610	724	3.106552	CTGGCTCTCCTCGACGAG	58.893	66.667	18.08	18.08	0.00	4.18
614	728	2.795297	CTCTCCTCGACGAGCACC	59.205	66.667	19.55	0.00	0.00	5.01
615	729	2.750637	TCTCCTCGACGAGCACCC	60.751	66.667	19.55	0.00	0.00	4.61
616	730	4.180946	CTCCTCGACGAGCACCCG	62.181	72.222	19.55	5.56	0.00	5.28
645	759	4.074526	GCAGCAGCGTCTCCTCCA	62.075	66.667	0.00	0.00	0.00	3.86
646	760	2.898738	CAGCAGCGTCTCCTCCAT	59.101	61.111	0.00	0.00	0.00	3.41
647	761	1.521010	CAGCAGCGTCTCCTCCATG	60.521	63.158	0.00	0.00	0.00	3.66
648	762	1.986757	AGCAGCGTCTCCTCCATGT	60.987	57.895	0.00	0.00	0.00	3.21
649	763	1.520342	GCAGCGTCTCCTCCATGTC	60.520	63.158	0.00	0.00	0.00	3.06
650	764	1.142748	CAGCGTCTCCTCCATGTCC	59.857	63.158	0.00	0.00	0.00	4.02
651	765	1.000993	AGCGTCTCCTCCATGTCCT	59.999	57.895	0.00	0.00	0.00	3.85
652	766	0.616111	AGCGTCTCCTCCATGTCCTT	60.616	55.000	0.00	0.00	0.00	3.36
653	767	0.460987	GCGTCTCCTCCATGTCCTTG	60.461	60.000	0.00	0.00	0.00	3.61
654	768	0.898320	CGTCTCCTCCATGTCCTTGT	59.102	55.000	0.00	0.00	0.00	3.16
655	769	1.134965	CGTCTCCTCCATGTCCTTGTC	60.135	57.143	0.00	0.00	0.00	3.18
656	770	1.134965	GTCTCCTCCATGTCCTTGTCG	60.135	57.143	0.00	0.00	0.00	4.35
657	771	0.898320	CTCCTCCATGTCCTTGTCGT	59.102	55.000	0.00	0.00	0.00	4.34
823	1079	8.545420	GTTTTAAACGAGTTTCTGACAGATGTA	58.455	33.333	5.87	0.00	34.23	2.29
1152	2254	5.109210	TGCTGATGGAGTATTTCGTAAGTG	58.891	41.667	0.00	0.00	39.48	3.16
1294	2458	4.345257	AGCAAACTCCGGATACTGTGATAT	59.655	41.667	3.57	0.00	0.00	1.63
1301	2465	6.724441	ACTCCGGATACTGTGATATATCCAAA	59.276	38.462	3.57	0.79	44.97	3.28
2485	6760	4.346127	TGAGGATGCAACATAGATAGCAGT	59.654	41.667	0.00	0.00	40.71	4.40
2487	6762	5.788450	AGGATGCAACATAGATAGCAGTAC	58.212	41.667	0.00	0.00	40.71	2.73
2488	6763	5.305386	AGGATGCAACATAGATAGCAGTACA	59.695	40.000	0.00	0.00	40.71	2.90
2491	6776	7.490725	GGATGCAACATAGATAGCAGTACATAG	59.509	40.741	0.00	0.00	40.71	2.23
2794	7393	2.617308	GGAGGTCGTCGTCATCATCTTA	59.383	50.000	6.49	0.00	0.00	2.10
2940	7539	1.607225	TGGCATGATCCCCTTACCTT	58.393	50.000	0.00	0.00	0.00	3.50
3038	7637	1.210478	AGCCCTTGAACGCTGATGTAT	59.790	47.619	0.00	0.00	32.98	2.29
3105	7704	1.133025	GCGCAGAACCATAAAGCATGT	59.867	47.619	0.30	0.00	32.21	3.21
3287	8197	3.579151	GGAGTTAAAGAGAGGTGGAGTGT	59.421	47.826	0.00	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	2.819608	GCTACTGCCCAAACAAAGATGA	59.180	45.455	0.00	0.00	0.00	2.92
13	14	4.783764	AATTTGTAGCTACTGCCCAAAC	57.216	40.909	23.84	0.00	40.67	2.93
84	85	4.481870	GTGCATTGCAATGGACGG	57.518	55.556	37.36	16.94	45.46	4.79
423	453	3.722147	CCTGATATGCTGGTGTGTAGTC	58.278	50.000	0.00	0.00	0.00	2.59
557	671	4.785512	AAGCTCGAGTCGCTGCCG	62.786	66.667	20.89	4.58	37.87	5.69
558	672	3.184683	CAAGCTCGAGTCGCTGCC	61.185	66.667	20.89	5.41	37.87	4.85
559	673	3.847709	GCAAGCTCGAGTCGCTGC	61.848	66.667	15.13	18.22	37.87	5.25
560	674	2.431430	TGCAAGCTCGAGTCGCTG	60.431	61.111	15.13	10.12	37.87	5.18
561	675	2.126149	CTGCAAGCTCGAGTCGCT	60.126	61.111	15.13	2.58	39.94	4.93
562	676	2.431601	ACTGCAAGCTCGAGTCGC	60.432	61.111	15.13	14.28	37.60	5.19
563	677	3.760673	GACTGCAAGCTCGAGTCG	58.239	61.111	15.13	6.09	37.60	4.18
564	678	1.210413	TCGACTGCAAGCTCGAGTC	59.790	57.895	15.13	6.52	39.99	3.36
565	679	3.355756	TCGACTGCAAGCTCGAGT	58.644	55.556	15.13	0.00	39.99	4.18
567	681	2.126307	GCTCGACTGCAAGCTCGA	60.126	61.111	9.66	9.66	41.61	4.04
568	682	3.540014	CGCTCGACTGCAAGCTCG	61.540	66.667	6.55	4.42	37.60	5.03
569	683	3.184683	CCGCTCGACTGCAAGCTC	61.185	66.667	6.55	0.00	37.60	4.09
572	686	3.485431	CTGCCGCTCGACTGCAAG	61.485	66.667	0.00	0.00	38.10	4.01
589	703	3.456365	TCGAGGAGAGCCAGCTGC	61.456	66.667	8.66	3.91	41.71	5.25
590	704	2.493973	GTCGAGGAGAGCCAGCTG	59.506	66.667	6.78	6.78	36.29	4.24
591	705	3.137459	CGTCGAGGAGAGCCAGCT	61.137	66.667	0.00	0.00	36.29	4.24
592	706	3.119709	CTCGTCGAGGAGAGCCAGC	62.120	68.421	26.94	0.00	36.08	4.85
593	707	3.106552	CTCGTCGAGGAGAGCCAG	58.893	66.667	26.94	2.46	36.08	4.85
597	711	2.766400	GGGTGCTCGTCGAGGAGAG	61.766	68.421	33.11	20.36	36.08	3.20
598	712	2.750637	GGGTGCTCGTCGAGGAGA	60.751	66.667	33.11	18.04	36.08	3.71
599	713	4.180946	CGGGTGCTCGTCGAGGAG	62.181	72.222	26.72	26.72	37.11	3.69
618	732	3.574445	GCTGCTGCGGCTCATCAG	61.574	66.667	25.48	8.33	40.81	2.90
628	742	3.382803	ATGGAGGAGACGCTGCTGC	62.383	63.158	5.34	5.34	40.30	5.25
629	743	1.521010	CATGGAGGAGACGCTGCTG	60.521	63.158	5.68	0.00	30.82	4.41
630	744	1.954362	GACATGGAGGAGACGCTGCT	61.954	60.000	0.00	0.86	34.11	4.24
631	745	1.520342	GACATGGAGGAGACGCTGC	60.520	63.158	0.00	0.00	0.00	5.25
632	746	1.142748	GGACATGGAGGAGACGCTG	59.857	63.158	0.00	0.00	0.00	5.18
633	747	0.616111	AAGGACATGGAGGAGACGCT	60.616	55.000	0.00	0.00	0.00	5.07
634	748	0.460987	CAAGGACATGGAGGAGACGC	60.461	60.000	0.00	0.00	0.00	5.19
635	749	0.898320	ACAAGGACATGGAGGAGACG	59.102	55.000	0.00	0.00	0.00	4.18
636	750	1.134965	CGACAAGGACATGGAGGAGAC	60.135	57.143	0.00	0.00	0.00	3.36
637	751	1.186200	CGACAAGGACATGGAGGAGA	58.814	55.000	0.00	0.00	0.00	3.71
638	752	0.898320	ACGACAAGGACATGGAGGAG	59.102	55.000	0.00	0.00	0.00	3.69
639	753	0.895530	GACGACAAGGACATGGAGGA	59.104	55.000	0.00	0.00	0.00	3.71
640	754	0.458543	CGACGACAAGGACATGGAGG	60.459	60.000	0.00	0.00	0.00	4.30
641	755	0.526211	TCGACGACAAGGACATGGAG	59.474	55.000	0.00	0.00	0.00	3.86
642	756	0.526211	CTCGACGACAAGGACATGGA	59.474	55.000	0.00	0.00	0.00	3.41
643	757	0.243907	ACTCGACGACAAGGACATGG	59.756	55.000	0.00	0.00	0.00	3.66
644	758	2.913777	TACTCGACGACAAGGACATG	57.086	50.000	0.00	0.00	0.00	3.21
645	759	4.082408	TCAATTACTCGACGACAAGGACAT	60.082	41.667	0.00	0.00	0.00	3.06
646	760	3.253921	TCAATTACTCGACGACAAGGACA	59.746	43.478	0.00	0.00	0.00	4.02
647	761	3.607209	GTCAATTACTCGACGACAAGGAC	59.393	47.826	0.00	0.74	0.00	3.85
648	762	3.253921	TGTCAATTACTCGACGACAAGGA	59.746	43.478	0.00	0.00	33.86	3.36
649	763	3.571571	TGTCAATTACTCGACGACAAGG	58.428	45.455	0.00	0.00	33.86	3.61
650	764	5.570262	TTTGTCAATTACTCGACGACAAG	57.430	39.130	0.00	0.00	44.69	3.16
651	765	5.970140	TTTTGTCAATTACTCGACGACAA	57.030	34.783	0.00	0.00	42.98	3.18
652	766	5.970140	TTTTTGTCAATTACTCGACGACA	57.030	34.783	0.00	0.00	34.78	4.35
1152	2254	4.022589	CAGATGAGAGGAGAGAATGAGCTC	60.023	50.000	6.82	6.82	35.11	4.09
1294	2458	3.964031	ACAAGCCCACAAAAGTTTGGATA	59.036	39.130	8.55	0.00	42.34	2.59
1301	2465	1.750778	CAGTGACAAGCCCACAAAAGT	59.249	47.619	0.00	0.00	37.01	2.66
2940	7539	1.004277	GGACCAGCAGTATGGAAACCA	59.996	52.381	0.00	0.00	43.57	3.67
3033	7632	1.067212	GAAGGTCGCCACGAGATACAT	59.933	52.381	0.00	0.00	36.23	2.29
3038	7637	1.215382	CATGAAGGTCGCCACGAGA	59.785	57.895	0.00	0.00	36.23	4.04
3105	7704	1.383799	CTGGCAAGGGATGGGTTGA	59.616	57.895	0.00	0.00	0.00	3.18
3287	8197	3.857157	AGTTTTACTTCTCCACTGCCA	57.143	42.857	0.00	0.00	0.00	4.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.