Multiple sequence alignment - TraesCS3B01G321600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G321600 chr3B 100.000 2379 0 0 534 2912 520612122 520609744 0.000000e+00 4394.0
1 TraesCS3B01G321600 chr3B 100.000 305 0 0 1 305 520612655 520612351 5.450000e-157 564.0
2 TraesCS3B01G321600 chr3B 93.750 304 15 4 3 305 593931331 593931631 1.230000e-123 453.0
3 TraesCS3B01G321600 chr3B 81.410 156 22 4 2345 2494 16694252 16694098 1.420000e-23 121.0
4 TraesCS3B01G321600 chr3D 92.407 1475 59 28 877 2303 395667463 395665994 0.000000e+00 2054.0
5 TraesCS3B01G321600 chr3D 89.474 209 13 4 2704 2912 395665604 395665405 3.720000e-64 255.0
6 TraesCS3B01G321600 chr3D 95.082 122 6 0 702 823 395667843 395667722 2.960000e-45 193.0
7 TraesCS3B01G321600 chr3D 100.000 49 0 0 2654 2702 132920985 132921033 1.110000e-14 91.6
8 TraesCS3B01G321600 chr3A 95.476 1282 36 8 702 1963 515829339 515828060 0.000000e+00 2026.0
9 TraesCS3B01G321600 chr3A 87.019 208 16 6 2706 2911 515827326 515827128 1.050000e-54 224.0
10 TraesCS3B01G321600 chr1D 88.173 854 86 7 1076 1914 441034648 441033795 0.000000e+00 1003.0
11 TraesCS3B01G321600 chr1D 86.765 68 9 0 637 704 157721196 157721129 3.110000e-10 76.8
12 TraesCS3B01G321600 chr1A 87.082 898 97 11 1033 1913 537070101 537070996 0.000000e+00 998.0
13 TraesCS3B01G321600 chr1A 99.654 289 1 0 3 291 343423621 343423909 1.990000e-146 529.0
14 TraesCS3B01G321600 chr1A 98.810 168 2 0 534 701 343424070 343424237 1.700000e-77 300.0
15 TraesCS3B01G321600 chr1A 84.768 302 33 9 6 304 376776849 376776558 1.020000e-74 291.0
16 TraesCS3B01G321600 chr1A 98.675 151 2 0 2551 2701 23150823 23150673 4.780000e-68 268.0
17 TraesCS3B01G321600 chr1A 100.000 29 0 0 2674 2702 578812468 578812496 1.000000e-03 54.7
18 TraesCS3B01G321600 chr1B 87.588 854 91 7 1076 1914 598702877 598702024 0.000000e+00 976.0
19 TraesCS3B01G321600 chr1B 88.172 186 17 4 2315 2496 32992227 32992043 1.760000e-52 217.0
20 TraesCS3B01G321600 chr1B 95.122 41 2 0 2444 2484 130720707 130720747 6.740000e-07 65.8
21 TraesCS3B01G321600 chr7A 98.680 303 4 0 3 305 332448809 332449111 3.300000e-149 538.0
22 TraesCS3B01G321600 chr7A 94.079 304 13 4 3 305 125919879 125919580 9.510000e-125 457.0
23 TraesCS3B01G321600 chr7A 98.817 169 2 0 534 702 332449120 332449288 4.720000e-78 302.0
24 TraesCS3B01G321600 chr7A 93.023 43 3 0 2322 2364 94921871 94921913 2.420000e-06 63.9
25 TraesCS3B01G321600 chr4B 94.059 303 15 3 3 305 73658435 73658734 9.510000e-125 457.0
26 TraesCS3B01G321600 chr4B 91.429 175 9 5 534 702 73658743 73658917 4.850000e-58 235.0
27 TraesCS3B01G321600 chr6D 92.925 212 9 5 3 211 140223193 140223401 1.310000e-78 303.0
28 TraesCS3B01G321600 chr5A 92.611 203 13 2 3 205 53462392 53462192 1.020000e-74 291.0
29 TraesCS3B01G321600 chr5A 91.080 213 14 5 3 215 216967283 216967076 1.710000e-72 283.0
30 TraesCS3B01G321600 chr5A 90.323 93 7 2 213 304 216963385 216963294 1.420000e-23 121.0
31 TraesCS3B01G321600 chr2A 100.000 153 0 0 2550 2702 165234414 165234566 1.710000e-72 283.0
32 TraesCS3B01G321600 chr2A 98.065 155 3 0 2547 2701 300545931 300545777 1.330000e-68 270.0
33 TraesCS3B01G321600 chr4D 100.000 151 0 0 2551 2701 343087635 343087485 2.210000e-71 279.0
34 TraesCS3B01G321600 chr4D 89.130 184 14 5 2314 2493 84999372 84999553 1.050000e-54 224.0
35 TraesCS3B01G321600 chr4A 98.718 156 2 0 2547 2702 451201 451356 7.950000e-71 278.0
36 TraesCS3B01G321600 chr4A 93.377 151 3 2 2551 2701 81815692 81815549 1.760000e-52 217.0
37 TraesCS3B01G321600 chr4A 79.570 186 13 11 538 701 718551527 718551709 3.070000e-20 110.0
38 TraesCS3B01G321600 chr6B 98.718 156 1 1 2551 2705 18138825 18138670 2.860000e-70 276.0
39 TraesCS3B01G321600 chr2B 79.397 199 28 6 2300 2492 197710952 197711143 8.470000e-26 128.0
40 TraesCS3B01G321600 chr5B 91.935 62 5 0 637 698 699240875 699240936 1.440000e-13 87.9
41 TraesCS3B01G321600 chr7B 91.837 49 3 1 653 700 717551523 717551475 1.870000e-07 67.6
42 TraesCS3B01G321600 chr5D 95.122 41 2 0 653 693 46065278 46065318 6.740000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G321600 chr3B 520609744 520612655 2911 True 2479.0 4394 100.0000 1 2912 2 chr3B.!!$R2 2911
1 TraesCS3B01G321600 chr3D 395665405 395667843 2438 True 834.0 2054 92.3210 702 2912 3 chr3D.!!$R1 2210
2 TraesCS3B01G321600 chr3A 515827128 515829339 2211 True 1125.0 2026 91.2475 702 2911 2 chr3A.!!$R1 2209
3 TraesCS3B01G321600 chr1D 441033795 441034648 853 True 1003.0 1003 88.1730 1076 1914 1 chr1D.!!$R2 838
4 TraesCS3B01G321600 chr1A 537070101 537070996 895 False 998.0 998 87.0820 1033 1913 1 chr1A.!!$F1 880
5 TraesCS3B01G321600 chr1A 343423621 343424237 616 False 414.5 529 99.2320 3 701 2 chr1A.!!$F3 698
6 TraesCS3B01G321600 chr1B 598702024 598702877 853 True 976.0 976 87.5880 1076 1914 1 chr1B.!!$R2 838
7 TraesCS3B01G321600 chr5A 216963294 216967283 3989 True 202.0 283 90.7015 3 304 2 chr5A.!!$R2 301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 621 0.103937 GGGAGAAGGCAGATCTGACG 59.896 60.0 27.04 0.0 45.19 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2580 6728 0.163788 GTGCTGTCGTCCACAAATCG 59.836 55.0 0.0 0.0 33.31 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 199 4.785453 GGGGGCAGCGACTTCCTG 62.785 72.222 0.00 0.00 0.00 3.86
204 205 3.710722 AGCGACTTCCTGCTGGGG 61.711 66.667 10.07 5.95 40.62 4.96
206 207 3.068881 CGACTTCCTGCTGGGGAA 58.931 61.111 10.07 7.85 42.39 3.97
207 208 1.376037 CGACTTCCTGCTGGGGAAC 60.376 63.158 10.07 0.00 40.08 3.62
208 209 1.376037 GACTTCCTGCTGGGGAACG 60.376 63.158 10.07 5.91 40.08 3.95
209 210 2.747855 CTTCCTGCTGGGGAACGC 60.748 66.667 10.07 0.00 40.08 4.84
251 252 3.833645 CGGCGATGGGGACGAAGA 61.834 66.667 0.00 0.00 42.31 2.87
252 253 2.107141 GGCGATGGGGACGAAGAG 59.893 66.667 0.00 0.00 0.00 2.85
253 254 2.586357 GCGATGGGGACGAAGAGC 60.586 66.667 0.00 0.00 0.00 4.09
255 256 2.586357 GATGGGGACGAAGAGCGC 60.586 66.667 0.00 0.00 46.04 5.92
256 257 3.371097 GATGGGGACGAAGAGCGCA 62.371 63.158 11.47 0.00 46.04 6.09
257 258 2.650813 GATGGGGACGAAGAGCGCAT 62.651 60.000 11.47 0.00 46.04 4.73
259 260 2.586357 GGGACGAAGAGCGCATCC 60.586 66.667 11.47 6.23 46.04 3.51
260 261 2.184322 GGACGAAGAGCGCATCCA 59.816 61.111 11.47 0.00 46.04 3.41
261 262 1.880340 GGACGAAGAGCGCATCCAG 60.880 63.158 11.47 0.00 46.04 3.86
262 263 2.510238 ACGAAGAGCGCATCCAGC 60.510 61.111 11.47 0.00 46.04 4.85
264 265 2.102438 CGAAGAGCGCATCCAGCAA 61.102 57.895 11.47 0.00 46.13 3.91
265 266 1.427020 GAAGAGCGCATCCAGCAAC 59.573 57.895 11.47 0.00 46.13 4.17
266 267 1.300971 GAAGAGCGCATCCAGCAACA 61.301 55.000 11.47 0.00 46.13 3.33
267 268 0.679002 AAGAGCGCATCCAGCAACAT 60.679 50.000 11.47 0.00 46.13 2.71
268 269 1.063649 GAGCGCATCCAGCAACATG 59.936 57.895 11.47 0.00 46.13 3.21
269 270 2.103538 GCGCATCCAGCAACATGG 59.896 61.111 0.30 0.00 46.13 3.66
270 271 2.802792 CGCATCCAGCAACATGGG 59.197 61.111 0.00 0.00 46.13 4.00
271 272 1.750018 CGCATCCAGCAACATGGGA 60.750 57.895 0.00 0.00 46.13 4.37
272 273 1.811860 GCATCCAGCAACATGGGAC 59.188 57.895 0.00 0.00 44.79 4.46
274 275 1.100510 CATCCAGCAACATGGGACTG 58.899 55.000 0.00 0.73 41.01 3.51
275 276 0.682209 ATCCAGCAACATGGGACTGC 60.682 55.000 0.00 0.24 41.01 4.40
276 277 2.693762 CCAGCAACATGGGACTGCG 61.694 63.158 0.00 0.00 41.05 5.18
277 278 1.672030 CAGCAACATGGGACTGCGA 60.672 57.895 0.00 0.00 41.05 5.10
278 279 1.376424 AGCAACATGGGACTGCGAG 60.376 57.895 0.00 0.00 41.05 5.03
279 280 2.401766 GCAACATGGGACTGCGAGG 61.402 63.158 0.00 0.00 0.00 4.63
280 281 1.746615 CAACATGGGACTGCGAGGG 60.747 63.158 0.00 0.00 0.00 4.30
281 282 2.971598 AACATGGGACTGCGAGGGG 61.972 63.158 0.00 0.00 0.00 4.79
301 302 2.291856 GGAAGAGGTCCAGGTGAGG 58.708 63.158 0.00 0.00 46.97 3.86
302 303 1.268283 GGAAGAGGTCCAGGTGAGGG 61.268 65.000 0.00 0.00 46.97 4.30
303 304 1.229658 AAGAGGTCCAGGTGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
304 305 1.751143 AAGAGGTCCAGGTGAGGGGA 61.751 60.000 0.00 0.00 0.00 4.81
579 580 4.196826 CGCGCGCGGAAGAAGAAG 62.197 66.667 43.28 13.53 35.56 2.85
580 581 2.809601 GCGCGCGGAAGAAGAAGA 60.810 61.111 33.06 0.00 0.00 2.87
581 582 2.380410 GCGCGCGGAAGAAGAAGAA 61.380 57.895 33.06 0.00 0.00 2.52
582 583 1.704582 CGCGCGGAAGAAGAAGAAG 59.295 57.895 24.84 0.00 0.00 2.85
583 584 0.732880 CGCGCGGAAGAAGAAGAAGA 60.733 55.000 24.84 0.00 0.00 2.87
584 585 0.995728 GCGCGGAAGAAGAAGAAGAG 59.004 55.000 8.83 0.00 0.00 2.85
585 586 1.402984 GCGCGGAAGAAGAAGAAGAGA 60.403 52.381 8.83 0.00 0.00 3.10
586 587 2.525055 CGCGGAAGAAGAAGAAGAGAG 58.475 52.381 0.00 0.00 0.00 3.20
587 588 2.162608 CGCGGAAGAAGAAGAAGAGAGA 59.837 50.000 0.00 0.00 0.00 3.10
588 589 3.366476 CGCGGAAGAAGAAGAAGAGAGAA 60.366 47.826 0.00 0.00 0.00 2.87
589 590 4.173256 GCGGAAGAAGAAGAAGAGAGAAG 58.827 47.826 0.00 0.00 0.00 2.85
590 591 4.321675 GCGGAAGAAGAAGAAGAGAGAAGT 60.322 45.833 0.00 0.00 0.00 3.01
591 592 5.399013 CGGAAGAAGAAGAAGAGAGAAGTC 58.601 45.833 0.00 0.00 0.00 3.01
592 593 5.048364 CGGAAGAAGAAGAAGAGAGAAGTCA 60.048 44.000 0.00 0.00 0.00 3.41
593 594 6.515862 CGGAAGAAGAAGAAGAGAGAAGTCAA 60.516 42.308 0.00 0.00 0.00 3.18
594 595 6.645003 GGAAGAAGAAGAAGAGAGAAGTCAAC 59.355 42.308 0.00 0.00 0.00 3.18
595 596 5.768317 AGAAGAAGAAGAGAGAAGTCAACG 58.232 41.667 0.00 0.00 0.00 4.10
596 597 3.908213 AGAAGAAGAGAGAAGTCAACGC 58.092 45.455 0.00 0.00 0.00 4.84
597 598 2.339728 AGAAGAGAGAAGTCAACGCG 57.660 50.000 3.53 3.53 0.00 6.01
598 599 1.068194 AGAAGAGAGAAGTCAACGCGG 60.068 52.381 12.47 0.00 0.00 6.46
599 600 0.959553 AAGAGAGAAGTCAACGCGGA 59.040 50.000 12.47 0.00 0.00 5.54
600 601 0.523966 AGAGAGAAGTCAACGCGGAG 59.476 55.000 12.47 1.53 0.00 4.63
601 602 0.456995 GAGAGAAGTCAACGCGGAGG 60.457 60.000 12.47 0.00 0.00 4.30
612 613 4.168291 GCGGAGGGGAGAAGGCAG 62.168 72.222 0.00 0.00 0.00 4.85
613 614 2.364317 CGGAGGGGAGAAGGCAGA 60.364 66.667 0.00 0.00 0.00 4.26
614 615 1.764054 CGGAGGGGAGAAGGCAGAT 60.764 63.158 0.00 0.00 0.00 2.90
615 616 1.753368 CGGAGGGGAGAAGGCAGATC 61.753 65.000 0.00 0.00 0.00 2.75
616 617 0.399806 GGAGGGGAGAAGGCAGATCT 60.400 60.000 0.00 0.00 0.00 2.75
617 618 0.758123 GAGGGGAGAAGGCAGATCTG 59.242 60.000 18.84 18.84 0.00 2.90
618 619 0.341258 AGGGGAGAAGGCAGATCTGA 59.659 55.000 27.04 0.00 0.00 3.27
619 620 0.467804 GGGGAGAAGGCAGATCTGAC 59.532 60.000 27.04 24.51 39.43 3.51
620 621 0.103937 GGGAGAAGGCAGATCTGACG 59.896 60.000 27.04 0.00 45.19 4.35
621 622 0.103937 GGAGAAGGCAGATCTGACGG 59.896 60.000 27.04 0.00 45.19 4.79
622 623 0.529555 GAGAAGGCAGATCTGACGGC 60.530 60.000 27.04 19.71 45.19 5.68
623 624 0.975040 AGAAGGCAGATCTGACGGCT 60.975 55.000 27.04 21.58 45.19 5.52
624 625 0.107945 GAAGGCAGATCTGACGGCTT 60.108 55.000 27.04 21.44 45.19 4.35
625 626 0.326264 AAGGCAGATCTGACGGCTTT 59.674 50.000 27.04 10.95 45.19 3.51
626 627 0.392193 AGGCAGATCTGACGGCTTTG 60.392 55.000 27.04 0.00 45.19 2.77
627 628 1.372087 GGCAGATCTGACGGCTTTGG 61.372 60.000 27.04 0.00 0.00 3.28
628 629 0.674895 GCAGATCTGACGGCTTTGGT 60.675 55.000 27.04 0.00 0.00 3.67
629 630 1.813513 CAGATCTGACGGCTTTGGTT 58.186 50.000 18.34 0.00 0.00 3.67
630 631 1.466167 CAGATCTGACGGCTTTGGTTG 59.534 52.381 18.34 0.00 0.00 3.77
631 632 0.804989 GATCTGACGGCTTTGGTTGG 59.195 55.000 0.00 0.00 0.00 3.77
632 633 1.244019 ATCTGACGGCTTTGGTTGGC 61.244 55.000 0.00 0.00 0.00 4.52
633 634 1.898574 CTGACGGCTTTGGTTGGCT 60.899 57.895 0.00 0.00 0.00 4.75
634 635 2.133742 CTGACGGCTTTGGTTGGCTG 62.134 60.000 0.00 0.00 40.32 4.85
635 636 3.558099 GACGGCTTTGGTTGGCTGC 62.558 63.158 0.00 0.00 38.28 5.25
636 637 3.604667 CGGCTTTGGTTGGCTGCA 61.605 61.111 0.50 0.00 0.00 4.41
637 638 2.934570 CGGCTTTGGTTGGCTGCAT 61.935 57.895 0.50 0.00 0.00 3.96
638 639 1.079612 GGCTTTGGTTGGCTGCATC 60.080 57.895 0.50 0.00 0.00 3.91
639 640 1.444895 GCTTTGGTTGGCTGCATCG 60.445 57.895 0.50 0.00 0.00 3.84
640 641 1.213537 CTTTGGTTGGCTGCATCGG 59.786 57.895 0.50 0.00 0.00 4.18
641 642 2.216750 CTTTGGTTGGCTGCATCGGG 62.217 60.000 0.50 0.00 0.00 5.14
797 806 2.995872 AACTCGGGCTCGTGCTCTC 61.996 63.158 5.57 0.00 37.58 3.20
844 854 0.177373 GCCCGGTCGGAGATAAGTTT 59.823 55.000 11.39 0.00 40.67 2.66
861 871 0.903942 TTTCCATTCCATTGGCTGCC 59.096 50.000 12.87 12.87 36.66 4.85
863 873 1.753848 CCATTCCATTGGCTGCCGA 60.754 57.895 11.83 11.83 0.00 5.54
867 877 3.136123 CCATTGGCTGCCGACTGG 61.136 66.667 11.65 14.58 38.77 4.00
1587 5141 3.463585 GCCACCGGGGTCGTCATA 61.464 66.667 6.32 0.00 39.65 2.15
1620 5174 2.050714 GTCGGCGACAACGTCTCA 60.051 61.111 33.07 0.00 42.31 3.27
1955 5795 3.563697 CCACTGTCCTCCTCTGTAACCTA 60.564 52.174 0.00 0.00 0.00 3.08
1956 5796 4.282496 CACTGTCCTCCTCTGTAACCTAT 58.718 47.826 0.00 0.00 0.00 2.57
1961 5834 7.724951 ACTGTCCTCCTCTGTAACCTATAATAC 59.275 40.741 0.00 0.00 0.00 1.89
1974 5847 5.918608 ACCTATAATACTGAACTGGTGCTG 58.081 41.667 0.00 0.00 0.00 4.41
1979 5852 0.394565 ACTGAACTGGTGCTGGTCTC 59.605 55.000 0.00 0.00 0.00 3.36
1980 5853 0.394192 CTGAACTGGTGCTGGTCTCA 59.606 55.000 0.00 0.00 0.00 3.27
1981 5854 0.836606 TGAACTGGTGCTGGTCTCAA 59.163 50.000 0.00 0.00 0.00 3.02
1982 5855 1.211703 TGAACTGGTGCTGGTCTCAAA 59.788 47.619 0.00 0.00 0.00 2.69
1983 5856 1.876156 GAACTGGTGCTGGTCTCAAAG 59.124 52.381 0.00 0.00 0.00 2.77
1984 5857 0.839946 ACTGGTGCTGGTCTCAAAGT 59.160 50.000 0.00 0.00 0.00 2.66
1985 5858 1.212935 ACTGGTGCTGGTCTCAAAGTT 59.787 47.619 0.00 0.00 0.00 2.66
1986 5859 1.605710 CTGGTGCTGGTCTCAAAGTTG 59.394 52.381 0.00 0.00 0.00 3.16
1995 5868 5.989777 GCTGGTCTCAAAGTTGTTCTTACTA 59.010 40.000 0.00 0.00 35.02 1.82
2011 5884 5.010933 TCTTACTATAAGATCTGCCTCCGG 58.989 45.833 0.00 0.00 0.00 5.14
2043 5917 2.027100 TGAACCATACCGTACATTGCCA 60.027 45.455 0.00 0.00 0.00 4.92
2044 5918 3.211045 GAACCATACCGTACATTGCCAT 58.789 45.455 0.00 0.00 0.00 4.40
2045 5919 2.571212 ACCATACCGTACATTGCCATG 58.429 47.619 0.00 0.00 36.34 3.66
2046 5920 1.266718 CCATACCGTACATTGCCATGC 59.733 52.381 0.00 0.00 33.05 4.06
2047 5921 2.221169 CATACCGTACATTGCCATGCT 58.779 47.619 0.00 0.00 33.05 3.79
2050 5924 1.093972 CCGTACATTGCCATGCTCAA 58.906 50.000 0.00 1.88 33.05 3.02
2083 5959 3.644265 TGTACTGAACTGAAAGCACCCTA 59.356 43.478 0.00 0.00 37.60 3.53
2122 5998 5.467735 CGAGATGCAATGGTCATTATTCAGA 59.532 40.000 0.00 0.00 0.00 3.27
2125 6001 7.658261 AGATGCAATGGTCATTATTCAGATTG 58.342 34.615 0.00 0.00 0.00 2.67
2133 6009 5.537674 GGTCATTATTCAGATTGGCATCCTT 59.462 40.000 0.00 0.00 0.00 3.36
2138 6015 1.918262 TCAGATTGGCATCCTTGAGGT 59.082 47.619 0.00 0.00 36.34 3.85
2156 6033 7.254455 CCTTGAGGTTTTGTAATACTCGCATAG 60.254 40.741 0.00 0.00 0.00 2.23
2160 6037 9.130312 GAGGTTTTGTAATACTCGCATAGATAG 57.870 37.037 0.00 0.00 0.00 2.08
2167 6044 9.678941 TGTAATACTCGCATAGATAGTTTTGAG 57.321 33.333 0.00 0.00 0.00 3.02
2192 6069 4.202419 ACATAGTTGCTGTTGGTACTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
2215 6093 4.472286 ACAAATTAAATTGCTCGTGTCCG 58.528 39.130 3.10 0.00 33.52 4.79
2216 6094 3.757745 AATTAAATTGCTCGTGTCCGG 57.242 42.857 0.00 0.00 33.95 5.14
2217 6095 2.459060 TTAAATTGCTCGTGTCCGGA 57.541 45.000 0.00 0.00 33.95 5.14
2219 6097 0.250124 AAATTGCTCGTGTCCGGACA 60.250 50.000 33.23 33.23 39.32 4.02
2225 6107 0.790207 CTCGTGTCCGGACAAATGTG 59.210 55.000 37.75 24.76 43.77 3.21
2241 6123 6.633856 ACAAATGTGCTGAAACTTCTTTCTT 58.366 32.000 0.00 0.00 37.30 2.52
2249 6131 5.923114 GCTGAAACTTCTTTCTTCAATTCCC 59.077 40.000 0.00 0.00 37.30 3.97
2250 6132 6.072112 TGAAACTTCTTTCTTCAATTCCCG 57.928 37.500 0.00 0.00 37.30 5.14
2267 6149 2.026262 TCCCGAATTCCAAAGAGAAGGG 60.026 50.000 0.00 1.48 37.72 3.95
2269 6151 2.369394 CGAATTCCAAAGAGAAGGGGG 58.631 52.381 0.00 0.00 0.00 5.40
2286 6168 1.222113 GGGAGCTTCTGTACCTGCC 59.778 63.158 0.00 0.00 0.00 4.85
2288 6170 1.486211 GGAGCTTCTGTACCTGCCTA 58.514 55.000 0.00 0.00 0.00 3.93
2296 6251 3.826524 TCTGTACCTGCCTATCTCTCTG 58.173 50.000 0.00 0.00 0.00 3.35
2304 6259 9.196139 GTACCTGCCTATCTCTCTGAATATATT 57.804 37.037 0.00 0.00 0.00 1.28
2307 6262 9.598517 CCTGCCTATCTCTCTGAATATATTTTC 57.401 37.037 0.00 0.00 0.00 2.29
2328 6283 7.926674 TTTCAGATGCAGAATGACTAATTCA 57.073 32.000 0.00 0.00 46.21 2.57
2330 6285 9.617523 TTTCAGATGCAGAATGACTAATTCATA 57.382 29.630 0.00 0.00 44.86 2.15
2331 6286 9.788889 TTCAGATGCAGAATGACTAATTCATAT 57.211 29.630 0.00 0.00 44.86 1.78
2332 6287 9.433153 TCAGATGCAGAATGACTAATTCATATC 57.567 33.333 0.00 2.45 44.86 1.63
2333 6288 9.438228 CAGATGCAGAATGACTAATTCATATCT 57.562 33.333 0.00 4.26 44.86 1.98
2373 6328 9.539825 AGATGTCACATCTAAATAGTTCATCAC 57.460 33.333 19.29 0.00 31.95 3.06
2374 6329 9.317936 GATGTCACATCTAAATAGTTCATCACA 57.682 33.333 10.81 0.00 30.93 3.58
2375 6330 9.842775 ATGTCACATCTAAATAGTTCATCACAT 57.157 29.630 0.00 0.00 0.00 3.21
2444 6399 9.448438 TTTCTAATGTTGTATAAGTGTCATGCT 57.552 29.630 0.00 0.00 0.00 3.79
2449 6404 9.618890 AATGTTGTATAAGTGTCATGCTTAGAT 57.381 29.630 0.00 0.00 32.72 1.98
2450 6405 8.424274 TGTTGTATAAGTGTCATGCTTAGATG 57.576 34.615 0.00 0.00 32.72 2.90
2451 6406 8.040727 TGTTGTATAAGTGTCATGCTTAGATGT 58.959 33.333 0.00 0.00 32.72 3.06
2452 6407 8.331022 GTTGTATAAGTGTCATGCTTAGATGTG 58.669 37.037 0.00 0.00 32.72 3.21
2454 6409 2.636830 AGTGTCATGCTTAGATGTGGC 58.363 47.619 0.00 0.00 0.00 5.01
2455 6410 2.026915 AGTGTCATGCTTAGATGTGGCA 60.027 45.455 0.00 0.00 40.32 4.92
2456 6411 2.947652 GTGTCATGCTTAGATGTGGCAT 59.052 45.455 0.00 0.00 45.91 4.40
2458 6413 4.212847 GTGTCATGCTTAGATGTGGCATAG 59.787 45.833 0.00 2.25 43.62 2.23
2459 6414 4.141642 TGTCATGCTTAGATGTGGCATAGT 60.142 41.667 0.00 0.00 43.62 2.12
2461 6416 5.991606 GTCATGCTTAGATGTGGCATAGTTA 59.008 40.000 0.00 0.00 43.62 2.24
2462 6417 5.991606 TCATGCTTAGATGTGGCATAGTTAC 59.008 40.000 0.00 0.00 43.62 2.50
2463 6418 4.368315 TGCTTAGATGTGGCATAGTTACG 58.632 43.478 0.00 0.00 0.00 3.18
2465 6420 4.444720 GCTTAGATGTGGCATAGTTACGTC 59.555 45.833 0.00 0.00 0.00 4.34
2466 6421 5.585820 TTAGATGTGGCATAGTTACGTCA 57.414 39.130 0.00 0.00 33.80 4.35
2467 6422 3.782046 AGATGTGGCATAGTTACGTCAC 58.218 45.455 0.00 0.00 33.80 3.67
2468 6423 3.194755 AGATGTGGCATAGTTACGTCACA 59.805 43.478 2.23 3.84 39.07 3.58
2469 6424 3.603158 TGTGGCATAGTTACGTCACAT 57.397 42.857 2.23 0.00 31.33 3.21
2470 6425 3.517602 TGTGGCATAGTTACGTCACATC 58.482 45.455 2.23 0.00 31.33 3.06
2471 6426 3.194755 TGTGGCATAGTTACGTCACATCT 59.805 43.478 2.23 0.00 31.33 2.90
2473 6428 4.976731 GTGGCATAGTTACGTCACATCTAG 59.023 45.833 2.23 0.00 0.00 2.43
2474 6429 4.885325 TGGCATAGTTACGTCACATCTAGA 59.115 41.667 2.23 0.00 0.00 2.43
2476 6431 5.859114 GGCATAGTTACGTCACATCTAGATG 59.141 44.000 27.63 27.63 44.15 2.90
2477 6432 6.294010 GGCATAGTTACGTCACATCTAGATGA 60.294 42.308 34.16 15.19 41.20 2.92
2478 6433 6.799441 GCATAGTTACGTCACATCTAGATGAG 59.201 42.308 34.16 27.21 41.20 2.90
2479 6434 7.520776 GCATAGTTACGTCACATCTAGATGAGT 60.521 40.741 34.16 26.53 41.20 3.41
2480 6435 6.366315 AGTTACGTCACATCTAGATGAGTC 57.634 41.667 34.16 23.48 41.20 3.36
2481 6436 5.297278 AGTTACGTCACATCTAGATGAGTCC 59.703 44.000 34.16 20.56 41.20 3.85
2482 6437 3.892284 ACGTCACATCTAGATGAGTCCT 58.108 45.455 34.16 12.72 41.20 3.85
2484 6439 5.437946 ACGTCACATCTAGATGAGTCCTAA 58.562 41.667 34.16 11.29 41.20 2.69
2486 6441 5.278071 CGTCACATCTAGATGAGTCCTAACC 60.278 48.000 34.16 12.67 41.20 2.85
2488 6443 5.594725 TCACATCTAGATGAGTCCTAACCAC 59.405 44.000 34.16 0.00 41.20 4.16
2489 6444 5.360999 CACATCTAGATGAGTCCTAACCACA 59.639 44.000 34.16 0.00 41.20 4.17
2490 6445 5.361285 ACATCTAGATGAGTCCTAACCACAC 59.639 44.000 34.16 0.00 41.20 3.82
2491 6446 4.279145 TCTAGATGAGTCCTAACCACACC 58.721 47.826 0.00 0.00 0.00 4.16
2492 6447 2.188817 AGATGAGTCCTAACCACACCC 58.811 52.381 0.00 0.00 0.00 4.61
2536 6684 4.651778 TGGAAACACCAAAGTCTCCATAG 58.348 43.478 0.00 0.00 46.75 2.23
2539 6687 3.618690 ACACCAAAGTCTCCATAGAGC 57.381 47.619 0.00 0.00 40.22 4.09
2542 6690 4.125703 CACCAAAGTCTCCATAGAGCATC 58.874 47.826 0.00 0.00 40.22 3.91
2556 6704 2.611518 GAGCATCTACGAAACAGTGCT 58.388 47.619 0.00 0.00 44.75 4.40
2557 6705 2.341257 AGCATCTACGAAACAGTGCTG 58.659 47.619 0.00 0.00 40.99 4.41
2558 6706 1.201965 GCATCTACGAAACAGTGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
2559 6707 2.341257 CATCTACGAAACAGTGCTGCT 58.659 47.619 0.00 0.00 0.00 4.24
2560 6708 3.511699 CATCTACGAAACAGTGCTGCTA 58.488 45.455 0.00 0.00 0.00 3.49
2561 6709 3.868757 TCTACGAAACAGTGCTGCTAT 57.131 42.857 0.00 0.00 0.00 2.97
2562 6710 3.511699 TCTACGAAACAGTGCTGCTATG 58.488 45.455 0.00 2.01 0.00 2.23
2563 6711 0.798776 ACGAAACAGTGCTGCTATGC 59.201 50.000 0.00 0.00 0.00 3.14
2564 6712 0.798159 CGAAACAGTGCTGCTATGCA 59.202 50.000 0.00 0.00 41.05 3.96
2570 6718 4.939399 TGCTGCTATGCACACGAT 57.061 50.000 0.00 0.00 38.12 3.73
2571 6719 2.386272 TGCTGCTATGCACACGATG 58.614 52.632 0.00 0.00 38.12 3.84
2572 6720 0.391528 TGCTGCTATGCACACGATGT 60.392 50.000 0.00 0.00 38.12 3.06
2573 6721 0.729116 GCTGCTATGCACACGATGTT 59.271 50.000 0.00 0.00 33.79 2.71
2574 6722 1.530441 GCTGCTATGCACACGATGTTG 60.530 52.381 0.00 0.00 33.79 3.33
2575 6723 2.001872 CTGCTATGCACACGATGTTGA 58.998 47.619 0.00 0.00 33.79 3.18
2576 6724 1.731709 TGCTATGCACACGATGTTGAC 59.268 47.619 0.00 0.00 31.71 3.18
2577 6725 1.267038 GCTATGCACACGATGTTGACG 60.267 52.381 0.00 0.00 0.00 4.35
2578 6726 1.324435 CTATGCACACGATGTTGACGG 59.676 52.381 0.00 0.00 34.93 4.79
2579 6727 0.320334 ATGCACACGATGTTGACGGA 60.320 50.000 0.00 0.00 34.93 4.69
2580 6728 1.218875 TGCACACGATGTTGACGGAC 61.219 55.000 0.00 0.00 34.93 4.79
2581 6729 1.772882 CACACGATGTTGACGGACG 59.227 57.895 0.00 0.00 34.93 4.79
2582 6730 0.662077 CACACGATGTTGACGGACGA 60.662 55.000 0.00 0.00 34.93 4.20
2583 6731 0.242825 ACACGATGTTGACGGACGAT 59.757 50.000 0.00 0.00 34.93 3.73
2584 6732 1.336517 ACACGATGTTGACGGACGATT 60.337 47.619 0.00 0.00 34.93 3.34
2585 6733 1.724623 CACGATGTTGACGGACGATTT 59.275 47.619 0.00 0.00 34.93 2.17
2586 6734 1.724623 ACGATGTTGACGGACGATTTG 59.275 47.619 0.00 0.00 34.93 2.32
2587 6735 1.724623 CGATGTTGACGGACGATTTGT 59.275 47.619 0.00 0.00 0.00 2.83
2588 6736 2.472235 CGATGTTGACGGACGATTTGTG 60.472 50.000 0.00 0.00 0.00 3.33
2589 6737 1.222300 TGTTGACGGACGATTTGTGG 58.778 50.000 0.00 0.00 0.00 4.17
2590 6738 1.202545 TGTTGACGGACGATTTGTGGA 60.203 47.619 0.00 0.00 0.00 4.02
2591 6739 1.193874 GTTGACGGACGATTTGTGGAC 59.806 52.381 0.00 0.00 0.00 4.02
2592 6740 0.665068 TGACGGACGATTTGTGGACG 60.665 55.000 0.00 0.00 0.00 4.79
2593 6741 0.387622 GACGGACGATTTGTGGACGA 60.388 55.000 0.00 0.00 0.00 4.20
2594 6742 0.665369 ACGGACGATTTGTGGACGAC 60.665 55.000 0.00 0.00 0.00 4.34
2595 6743 0.665068 CGGACGATTTGTGGACGACA 60.665 55.000 0.00 0.00 0.00 4.35
2596 6744 1.068474 GGACGATTTGTGGACGACAG 58.932 55.000 0.00 0.00 35.44 3.51
2597 6745 0.438830 GACGATTTGTGGACGACAGC 59.561 55.000 0.00 0.00 35.44 4.40
2598 6746 0.249699 ACGATTTGTGGACGACAGCA 60.250 50.000 0.00 0.00 35.44 4.41
2599 6747 0.163788 CGATTTGTGGACGACAGCAC 59.836 55.000 0.00 0.00 35.44 4.40
2600 6748 1.512926 GATTTGTGGACGACAGCACT 58.487 50.000 0.00 0.00 35.44 4.40
2601 6749 1.873591 GATTTGTGGACGACAGCACTT 59.126 47.619 0.00 0.00 35.44 3.16
2602 6750 2.605837 TTTGTGGACGACAGCACTTA 57.394 45.000 0.00 0.00 35.44 2.24
2603 6751 2.831685 TTGTGGACGACAGCACTTAT 57.168 45.000 0.00 0.00 35.44 1.73
2604 6752 2.363788 TGTGGACGACAGCACTTATC 57.636 50.000 0.00 0.00 0.00 1.75
2605 6753 1.616374 TGTGGACGACAGCACTTATCA 59.384 47.619 0.00 0.00 0.00 2.15
2606 6754 2.263077 GTGGACGACAGCACTTATCAG 58.737 52.381 0.00 0.00 0.00 2.90
2607 6755 2.094700 GTGGACGACAGCACTTATCAGA 60.095 50.000 0.00 0.00 0.00 3.27
2608 6756 2.760650 TGGACGACAGCACTTATCAGAT 59.239 45.455 0.00 0.00 0.00 2.90
2609 6757 3.181486 TGGACGACAGCACTTATCAGATC 60.181 47.826 0.00 0.00 0.00 2.75
2610 6758 3.039405 GACGACAGCACTTATCAGATCG 58.961 50.000 0.00 0.00 0.00 3.69
2611 6759 2.423892 ACGACAGCACTTATCAGATCGT 59.576 45.455 0.00 0.00 36.78 3.73
2612 6760 3.039405 CGACAGCACTTATCAGATCGTC 58.961 50.000 0.00 0.00 0.00 4.20
2613 6761 3.376540 GACAGCACTTATCAGATCGTCC 58.623 50.000 0.00 0.00 0.00 4.79
2614 6762 2.760650 ACAGCACTTATCAGATCGTCCA 59.239 45.455 0.00 0.00 0.00 4.02
2615 6763 3.386078 ACAGCACTTATCAGATCGTCCAT 59.614 43.478 0.00 0.00 0.00 3.41
2616 6764 3.739810 CAGCACTTATCAGATCGTCCATG 59.260 47.826 0.00 0.00 0.00 3.66
2617 6765 2.478134 GCACTTATCAGATCGTCCATGC 59.522 50.000 0.00 0.00 0.00 4.06
2618 6766 3.721035 CACTTATCAGATCGTCCATGCA 58.279 45.455 0.00 0.00 0.00 3.96
2619 6767 4.313282 CACTTATCAGATCGTCCATGCAT 58.687 43.478 0.00 0.00 0.00 3.96
2620 6768 5.473039 CACTTATCAGATCGTCCATGCATA 58.527 41.667 0.00 0.00 0.00 3.14
2621 6769 5.575995 CACTTATCAGATCGTCCATGCATAG 59.424 44.000 0.00 0.00 0.00 2.23
2622 6770 2.445565 TCAGATCGTCCATGCATAGC 57.554 50.000 0.00 0.00 0.00 2.97
2623 6771 1.688197 TCAGATCGTCCATGCATAGCA 59.312 47.619 0.00 0.00 44.86 3.49
2635 6783 3.260475 TGCATAGCATCAAACCGTAGT 57.740 42.857 0.00 0.00 31.71 2.73
2636 6784 3.605634 TGCATAGCATCAAACCGTAGTT 58.394 40.909 0.00 0.00 32.96 2.24
2637 6785 3.373748 TGCATAGCATCAAACCGTAGTTG 59.626 43.478 0.00 0.00 32.24 3.16
2638 6786 3.621268 GCATAGCATCAAACCGTAGTTGA 59.379 43.478 0.00 0.00 35.97 3.18
2639 6787 4.494199 GCATAGCATCAAACCGTAGTTGAC 60.494 45.833 0.00 0.00 35.97 3.18
2650 6798 0.727398 GTAGTTGACGGCTGGATTGC 59.273 55.000 0.00 0.00 0.00 3.56
2657 6805 4.778143 GGCTGGATTGCCCGTCGT 62.778 66.667 0.00 0.00 46.82 4.34
2658 6806 3.195698 GCTGGATTGCCCGTCGTC 61.196 66.667 0.00 0.00 37.93 4.20
2659 6807 2.579201 CTGGATTGCCCGTCGTCT 59.421 61.111 0.00 0.00 37.93 4.18
2660 6808 1.519455 CTGGATTGCCCGTCGTCTC 60.519 63.158 0.00 0.00 37.93 3.36
2661 6809 2.225791 CTGGATTGCCCGTCGTCTCA 62.226 60.000 0.00 0.00 37.93 3.27
2662 6810 1.810030 GGATTGCCCGTCGTCTCAC 60.810 63.158 0.00 0.00 0.00 3.51
2663 6811 1.215647 GATTGCCCGTCGTCTCACT 59.784 57.895 0.00 0.00 0.00 3.41
2664 6812 1.078759 GATTGCCCGTCGTCTCACTG 61.079 60.000 0.00 0.00 0.00 3.66
2665 6813 1.816863 ATTGCCCGTCGTCTCACTGT 61.817 55.000 0.00 0.00 0.00 3.55
2666 6814 2.126424 GCCCGTCGTCTCACTGTC 60.126 66.667 0.00 0.00 0.00 3.51
2667 6815 2.176055 CCCGTCGTCTCACTGTCG 59.824 66.667 0.00 0.00 0.00 4.35
2668 6816 2.614446 CCCGTCGTCTCACTGTCGT 61.614 63.158 0.00 0.00 0.00 4.34
2669 6817 1.440518 CCGTCGTCTCACTGTCGTG 60.441 63.158 0.00 0.00 42.59 4.35
2670 6818 2.075489 CGTCGTCTCACTGTCGTGC 61.075 63.158 0.00 0.00 40.99 5.34
2671 6819 1.008881 GTCGTCTCACTGTCGTGCA 60.009 57.895 0.00 0.00 40.99 4.57
2672 6820 0.594028 GTCGTCTCACTGTCGTGCAA 60.594 55.000 0.00 0.00 40.99 4.08
2673 6821 0.317854 TCGTCTCACTGTCGTGCAAG 60.318 55.000 0.00 0.00 40.99 4.01
2674 6822 1.856012 GTCTCACTGTCGTGCAAGC 59.144 57.895 0.00 0.00 40.99 4.01
2675 6823 0.875908 GTCTCACTGTCGTGCAAGCA 60.876 55.000 0.00 0.00 40.99 3.91
2676 6824 0.875908 TCTCACTGTCGTGCAAGCAC 60.876 55.000 14.90 14.90 40.99 4.40
2693 6841 2.928361 CGTTGTCGTCCACACAGC 59.072 61.111 0.00 0.00 33.41 4.40
2694 6842 1.880796 CGTTGTCGTCCACACAGCA 60.881 57.895 0.00 0.00 33.41 4.41
2695 6843 1.821241 CGTTGTCGTCCACACAGCAG 61.821 60.000 0.00 0.00 33.41 4.24
2696 6844 0.810031 GTTGTCGTCCACACAGCAGT 60.810 55.000 0.00 0.00 33.41 4.40
2697 6845 0.107897 TTGTCGTCCACACAGCAGTT 60.108 50.000 0.00 0.00 33.41 3.16
2698 6846 0.107897 TGTCGTCCACACAGCAGTTT 60.108 50.000 0.00 0.00 0.00 2.66
2699 6847 0.582005 GTCGTCCACACAGCAGTTTC 59.418 55.000 0.00 0.00 0.00 2.78
2700 6848 0.874175 TCGTCCACACAGCAGTTTCG 60.874 55.000 0.00 0.00 0.00 3.46
2701 6849 1.151777 CGTCCACACAGCAGTTTCGT 61.152 55.000 0.00 0.00 0.00 3.85
2702 6850 0.582005 GTCCACACAGCAGTTTCGTC 59.418 55.000 0.00 0.00 0.00 4.20
2703 6851 0.464036 TCCACACAGCAGTTTCGTCT 59.536 50.000 0.00 0.00 0.00 4.18
2704 6852 1.684450 TCCACACAGCAGTTTCGTCTA 59.316 47.619 0.00 0.00 0.00 2.59
2705 6853 1.792949 CCACACAGCAGTTTCGTCTAC 59.207 52.381 0.00 0.00 0.00 2.59
2706 6854 1.452025 CACACAGCAGTTTCGTCTACG 59.548 52.381 0.00 0.00 41.45 3.51
2722 6870 7.502177 TCGTCTACGAAATAAAACAGATCAC 57.498 36.000 2.10 0.00 46.30 3.06
2728 6876 5.106712 ACGAAATAAAACAGATCACGCATGT 60.107 36.000 0.00 0.00 0.00 3.21
2729 6877 5.449113 CGAAATAAAACAGATCACGCATGTC 59.551 40.000 0.00 0.00 0.00 3.06
2762 6911 5.740290 TGAAAACTAGCAGCTAGTAGGTT 57.260 39.130 31.28 24.36 45.28 3.50
2791 6940 6.842163 ACACTATAGCAGCACATTGTTTTAC 58.158 36.000 0.00 0.00 0.00 2.01
2793 6942 7.822334 ACACTATAGCAGCACATTGTTTTACTA 59.178 33.333 0.00 0.00 0.00 1.82
2794 6943 8.664798 CACTATAGCAGCACATTGTTTTACTAA 58.335 33.333 0.00 0.00 0.00 2.24
2797 6946 8.915871 ATAGCAGCACATTGTTTTACTAATTG 57.084 30.769 0.00 0.00 0.00 2.32
2798 6947 5.634859 AGCAGCACATTGTTTTACTAATTGC 59.365 36.000 0.00 0.00 0.00 3.56
2842 6992 2.084546 GTTAGTCCTGTGGGTGATTGC 58.915 52.381 0.00 0.00 0.00 3.56
2843 6993 0.618458 TAGTCCTGTGGGTGATTGCC 59.382 55.000 0.00 0.00 0.00 4.52
2844 6994 1.136329 AGTCCTGTGGGTGATTGCCT 61.136 55.000 0.00 0.00 0.00 4.75
2845 6995 0.962356 GTCCTGTGGGTGATTGCCTG 60.962 60.000 0.00 0.00 0.00 4.85
2846 6996 1.133181 TCCTGTGGGTGATTGCCTGA 61.133 55.000 0.00 0.00 0.00 3.86
2847 6997 0.033796 CCTGTGGGTGATTGCCTGAT 60.034 55.000 0.00 0.00 0.00 2.90
2848 6998 1.617804 CCTGTGGGTGATTGCCTGATT 60.618 52.381 0.00 0.00 0.00 2.57
2849 6999 1.475280 CTGTGGGTGATTGCCTGATTG 59.525 52.381 0.00 0.00 0.00 2.67
2850 7000 0.819582 GTGGGTGATTGCCTGATTGG 59.180 55.000 0.00 0.00 39.35 3.16
2851 7001 0.409092 TGGGTGATTGCCTGATTGGT 59.591 50.000 0.00 0.00 38.35 3.67
2852 7002 1.638070 TGGGTGATTGCCTGATTGGTA 59.362 47.619 0.00 0.00 38.35 3.25
2853 7003 2.024414 GGGTGATTGCCTGATTGGTAC 58.976 52.381 0.00 0.00 38.35 3.34
2854 7004 1.670811 GGTGATTGCCTGATTGGTACG 59.329 52.381 0.00 0.00 38.35 3.67
2857 7007 0.916086 ATTGCCTGATTGGTACGGGA 59.084 50.000 0.00 0.00 38.35 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.126846 CGGTTGCAGCTTTTCTCTACG 59.873 52.381 0.00 0.00 0.00 3.51
1 2 2.413837 TCGGTTGCAGCTTTTCTCTAC 58.586 47.619 0.00 0.00 0.00 2.59
234 235 3.774959 CTCTTCGTCCCCATCGCCG 62.775 68.421 0.00 0.00 0.00 6.46
235 236 2.107141 CTCTTCGTCCCCATCGCC 59.893 66.667 0.00 0.00 0.00 5.54
236 237 2.586357 GCTCTTCGTCCCCATCGC 60.586 66.667 0.00 0.00 0.00 4.58
237 238 2.278857 CGCTCTTCGTCCCCATCG 60.279 66.667 0.00 0.00 0.00 3.84
240 241 3.371097 GATGCGCTCTTCGTCCCCA 62.371 63.158 9.73 0.00 41.07 4.96
241 242 2.586357 GATGCGCTCTTCGTCCCC 60.586 66.667 9.73 0.00 41.07 4.81
243 244 1.880340 CTGGATGCGCTCTTCGTCC 60.880 63.158 9.73 7.22 41.07 4.79
244 245 2.520904 GCTGGATGCGCTCTTCGTC 61.521 63.158 9.73 0.00 41.07 4.20
245 246 2.510238 GCTGGATGCGCTCTTCGT 60.510 61.111 9.73 0.00 41.07 3.85
246 247 2.102438 TTGCTGGATGCGCTCTTCG 61.102 57.895 9.73 0.00 46.63 3.79
247 248 1.300971 TGTTGCTGGATGCGCTCTTC 61.301 55.000 9.73 2.73 46.63 2.87
248 249 0.679002 ATGTTGCTGGATGCGCTCTT 60.679 50.000 9.73 0.00 46.63 2.85
250 251 1.063649 CATGTTGCTGGATGCGCTC 59.936 57.895 9.73 3.37 46.63 5.03
251 252 2.412323 CCATGTTGCTGGATGCGCT 61.412 57.895 9.73 0.00 46.63 5.92
252 253 2.103538 CCATGTTGCTGGATGCGC 59.896 61.111 0.00 0.00 46.63 6.09
253 254 1.750018 TCCCATGTTGCTGGATGCG 60.750 57.895 0.00 0.00 46.63 4.73
254 255 0.682209 AGTCCCATGTTGCTGGATGC 60.682 55.000 0.00 0.00 38.69 3.91
255 256 1.100510 CAGTCCCATGTTGCTGGATG 58.899 55.000 0.00 0.00 38.69 3.51
256 257 0.682209 GCAGTCCCATGTTGCTGGAT 60.682 55.000 8.89 0.00 38.69 3.41
257 258 1.303561 GCAGTCCCATGTTGCTGGA 60.304 57.895 8.89 0.00 38.69 3.86
259 260 1.642037 CTCGCAGTCCCATGTTGCTG 61.642 60.000 0.00 0.00 35.73 4.41
260 261 1.376424 CTCGCAGTCCCATGTTGCT 60.376 57.895 0.00 0.00 35.73 3.91
261 262 2.401766 CCTCGCAGTCCCATGTTGC 61.402 63.158 0.00 0.00 34.58 4.17
262 263 1.746615 CCCTCGCAGTCCCATGTTG 60.747 63.158 0.00 0.00 0.00 3.33
264 265 3.402681 CCCCTCGCAGTCCCATGT 61.403 66.667 0.00 0.00 0.00 3.21
265 266 4.181010 CCCCCTCGCAGTCCCATG 62.181 72.222 0.00 0.00 0.00 3.66
280 281 2.125225 ACCTGGACCTCTTCCCCC 59.875 66.667 0.00 0.00 45.17 5.40
281 282 1.229529 TCACCTGGACCTCTTCCCC 60.230 63.158 0.00 0.00 45.17 4.81
284 285 1.268283 CCCCTCACCTGGACCTCTTC 61.268 65.000 0.00 0.00 0.00 2.87
285 286 1.229658 CCCCTCACCTGGACCTCTT 60.230 63.158 0.00 0.00 0.00 2.85
286 287 2.177518 TCCCCTCACCTGGACCTCT 61.178 63.158 0.00 0.00 0.00 3.69
287 288 2.450243 TCCCCTCACCTGGACCTC 59.550 66.667 0.00 0.00 0.00 3.85
562 563 4.196826 CTTCTTCTTCCGCGCGCG 62.197 66.667 43.73 43.73 39.44 6.86
563 564 2.285064 CTTCTTCTTCTTCCGCGCGC 62.285 60.000 27.36 23.91 0.00 6.86
564 565 0.732880 TCTTCTTCTTCTTCCGCGCG 60.733 55.000 25.67 25.67 0.00 6.86
565 566 0.995728 CTCTTCTTCTTCTTCCGCGC 59.004 55.000 0.00 0.00 0.00 6.86
566 567 2.162608 TCTCTCTTCTTCTTCTTCCGCG 59.837 50.000 0.00 0.00 0.00 6.46
567 568 3.859411 TCTCTCTTCTTCTTCTTCCGC 57.141 47.619 0.00 0.00 0.00 5.54
568 569 5.048364 TGACTTCTCTCTTCTTCTTCTTCCG 60.048 44.000 0.00 0.00 0.00 4.30
569 570 6.339587 TGACTTCTCTCTTCTTCTTCTTCC 57.660 41.667 0.00 0.00 0.00 3.46
570 571 6.362283 CGTTGACTTCTCTCTTCTTCTTCTTC 59.638 42.308 0.00 0.00 0.00 2.87
571 572 6.212955 CGTTGACTTCTCTCTTCTTCTTCTT 58.787 40.000 0.00 0.00 0.00 2.52
572 573 5.768317 CGTTGACTTCTCTCTTCTTCTTCT 58.232 41.667 0.00 0.00 0.00 2.85
573 574 4.384547 GCGTTGACTTCTCTCTTCTTCTTC 59.615 45.833 0.00 0.00 0.00 2.87
574 575 4.303282 GCGTTGACTTCTCTCTTCTTCTT 58.697 43.478 0.00 0.00 0.00 2.52
575 576 3.610585 CGCGTTGACTTCTCTCTTCTTCT 60.611 47.826 0.00 0.00 0.00 2.85
576 577 2.659279 CGCGTTGACTTCTCTCTTCTTC 59.341 50.000 0.00 0.00 0.00 2.87
577 578 2.608261 CCGCGTTGACTTCTCTCTTCTT 60.608 50.000 4.92 0.00 0.00 2.52
578 579 1.068194 CCGCGTTGACTTCTCTCTTCT 60.068 52.381 4.92 0.00 0.00 2.85
579 580 1.068472 TCCGCGTTGACTTCTCTCTTC 60.068 52.381 4.92 0.00 0.00 2.87
580 581 0.959553 TCCGCGTTGACTTCTCTCTT 59.040 50.000 4.92 0.00 0.00 2.85
581 582 0.523966 CTCCGCGTTGACTTCTCTCT 59.476 55.000 4.92 0.00 0.00 3.10
582 583 0.456995 CCTCCGCGTTGACTTCTCTC 60.457 60.000 4.92 0.00 0.00 3.20
583 584 1.587054 CCTCCGCGTTGACTTCTCT 59.413 57.895 4.92 0.00 0.00 3.10
584 585 1.446272 CCCTCCGCGTTGACTTCTC 60.446 63.158 4.92 0.00 0.00 2.87
585 586 2.657237 CCCTCCGCGTTGACTTCT 59.343 61.111 4.92 0.00 0.00 2.85
586 587 2.434359 CCCCTCCGCGTTGACTTC 60.434 66.667 4.92 0.00 0.00 3.01
587 588 2.920912 TCCCCTCCGCGTTGACTT 60.921 61.111 4.92 0.00 0.00 3.01
588 589 3.382832 CTCCCCTCCGCGTTGACT 61.383 66.667 4.92 0.00 0.00 3.41
589 590 2.837371 CTTCTCCCCTCCGCGTTGAC 62.837 65.000 4.92 0.00 0.00 3.18
590 591 2.602267 TTCTCCCCTCCGCGTTGA 60.602 61.111 4.92 0.00 0.00 3.18
591 592 2.125512 CTTCTCCCCTCCGCGTTG 60.126 66.667 4.92 0.00 0.00 4.10
592 593 3.391382 CCTTCTCCCCTCCGCGTT 61.391 66.667 4.92 0.00 0.00 4.84
595 596 4.168291 CTGCCTTCTCCCCTCCGC 62.168 72.222 0.00 0.00 0.00 5.54
596 597 1.753368 GATCTGCCTTCTCCCCTCCG 61.753 65.000 0.00 0.00 0.00 4.63
597 598 0.399806 AGATCTGCCTTCTCCCCTCC 60.400 60.000 0.00 0.00 0.00 4.30
598 599 0.758123 CAGATCTGCCTTCTCCCCTC 59.242 60.000 10.38 0.00 0.00 4.30
599 600 0.341258 TCAGATCTGCCTTCTCCCCT 59.659 55.000 18.36 0.00 0.00 4.79
600 601 0.467804 GTCAGATCTGCCTTCTCCCC 59.532 60.000 18.36 0.00 0.00 4.81
601 602 0.103937 CGTCAGATCTGCCTTCTCCC 59.896 60.000 18.36 0.00 0.00 4.30
602 603 0.103937 CCGTCAGATCTGCCTTCTCC 59.896 60.000 18.36 0.00 0.00 3.71
603 604 0.529555 GCCGTCAGATCTGCCTTCTC 60.530 60.000 18.36 1.29 0.00 2.87
604 605 0.975040 AGCCGTCAGATCTGCCTTCT 60.975 55.000 18.36 9.31 0.00 2.85
605 606 0.107945 AAGCCGTCAGATCTGCCTTC 60.108 55.000 18.36 7.23 0.00 3.46
606 607 0.326264 AAAGCCGTCAGATCTGCCTT 59.674 50.000 18.36 13.34 0.00 4.35
607 608 0.392193 CAAAGCCGTCAGATCTGCCT 60.392 55.000 18.36 8.30 0.00 4.75
608 609 1.372087 CCAAAGCCGTCAGATCTGCC 61.372 60.000 18.36 5.64 0.00 4.85
609 610 0.674895 ACCAAAGCCGTCAGATCTGC 60.675 55.000 18.36 11.88 0.00 4.26
610 611 1.466167 CAACCAAAGCCGTCAGATCTG 59.534 52.381 17.07 17.07 0.00 2.90
611 612 1.611673 CCAACCAAAGCCGTCAGATCT 60.612 52.381 0.00 0.00 0.00 2.75
612 613 0.804989 CCAACCAAAGCCGTCAGATC 59.195 55.000 0.00 0.00 0.00 2.75
613 614 1.244019 GCCAACCAAAGCCGTCAGAT 61.244 55.000 0.00 0.00 0.00 2.90
614 615 1.896660 GCCAACCAAAGCCGTCAGA 60.897 57.895 0.00 0.00 0.00 3.27
615 616 1.898574 AGCCAACCAAAGCCGTCAG 60.899 57.895 0.00 0.00 0.00 3.51
616 617 2.192861 CAGCCAACCAAAGCCGTCA 61.193 57.895 0.00 0.00 0.00 4.35
617 618 2.644992 CAGCCAACCAAAGCCGTC 59.355 61.111 0.00 0.00 0.00 4.79
618 619 3.605664 GCAGCCAACCAAAGCCGT 61.606 61.111 0.00 0.00 0.00 5.68
619 620 2.824071 GATGCAGCCAACCAAAGCCG 62.824 60.000 0.00 0.00 0.00 5.52
620 621 1.079612 GATGCAGCCAACCAAAGCC 60.080 57.895 0.00 0.00 0.00 4.35
621 622 1.444895 CGATGCAGCCAACCAAAGC 60.445 57.895 0.00 0.00 0.00 3.51
622 623 1.213537 CCGATGCAGCCAACCAAAG 59.786 57.895 0.00 0.00 0.00 2.77
623 624 2.274645 CCCGATGCAGCCAACCAAA 61.275 57.895 0.00 0.00 0.00 3.28
624 625 2.676121 CCCGATGCAGCCAACCAA 60.676 61.111 0.00 0.00 0.00 3.67
686 687 1.376609 AAAAAGGGCGATGCTAGGCG 61.377 55.000 0.00 0.00 34.74 5.52
687 688 2.493547 AAAAAGGGCGATGCTAGGC 58.506 52.632 0.00 0.00 0.00 3.93
714 715 2.357517 CGGTGGCGCTGACTTCTT 60.358 61.111 7.64 0.00 0.00 2.52
844 854 1.753848 CGGCAGCCAATGGAATGGA 60.754 57.895 13.30 0.00 43.54 3.41
940 1161 1.972198 CTTGTGAGGGCGGTGACTA 59.028 57.895 0.00 0.00 0.00 2.59
942 1163 3.050275 GCTTGTGAGGGCGGTGAC 61.050 66.667 0.00 0.00 0.00 3.67
1203 1482 3.384014 CTCGAGCGACGGGTGAGAC 62.384 68.421 0.00 0.00 42.82 3.36
1578 5132 1.359475 GGTCTCGCCTATGACGACC 59.641 63.158 0.00 0.00 37.57 4.79
1620 5174 1.292223 CGTGACGTGGTGGAGGATT 59.708 57.895 0.00 0.00 0.00 3.01
1818 5643 3.391665 CTTCCCGCCGATCAGCCTT 62.392 63.158 0.00 0.00 0.00 4.35
1955 5795 4.471386 AGACCAGCACCAGTTCAGTATTAT 59.529 41.667 0.00 0.00 0.00 1.28
1956 5796 3.838317 AGACCAGCACCAGTTCAGTATTA 59.162 43.478 0.00 0.00 0.00 0.98
1961 5834 0.394192 TGAGACCAGCACCAGTTCAG 59.606 55.000 0.00 0.00 0.00 3.02
1974 5847 9.924650 TCTTATAGTAAGAACAACTTTGAGACC 57.075 33.333 0.00 0.00 39.72 3.85
1980 5853 9.384764 GGCAGATCTTATAGTAAGAACAACTTT 57.615 33.333 0.00 0.00 39.72 2.66
1981 5854 8.763601 AGGCAGATCTTATAGTAAGAACAACTT 58.236 33.333 0.00 0.00 42.04 2.66
1982 5855 8.312669 AGGCAGATCTTATAGTAAGAACAACT 57.687 34.615 0.00 0.11 0.00 3.16
1983 5856 7.654116 GGAGGCAGATCTTATAGTAAGAACAAC 59.346 40.741 0.00 0.00 0.00 3.32
1984 5857 7.470147 CGGAGGCAGATCTTATAGTAAGAACAA 60.470 40.741 0.00 0.00 0.00 2.83
1985 5858 6.016192 CGGAGGCAGATCTTATAGTAAGAACA 60.016 42.308 0.00 0.00 0.00 3.18
1986 5859 6.383415 CGGAGGCAGATCTTATAGTAAGAAC 58.617 44.000 0.00 1.96 0.00 3.01
2011 5884 3.676324 CGGTATGGTTCACTTCTCCTCAC 60.676 52.174 0.00 0.00 0.00 3.51
2043 5917 1.176527 CATTTGTCGGGGTTGAGCAT 58.823 50.000 0.00 0.00 0.00 3.79
2044 5918 0.179004 ACATTTGTCGGGGTTGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
2045 5919 1.467342 GTACATTTGTCGGGGTTGAGC 59.533 52.381 0.00 0.00 0.00 4.26
2046 5920 2.742053 CAGTACATTTGTCGGGGTTGAG 59.258 50.000 0.00 0.00 0.00 3.02
2047 5921 2.369203 TCAGTACATTTGTCGGGGTTGA 59.631 45.455 0.00 0.00 0.00 3.18
2050 5924 2.370849 AGTTCAGTACATTTGTCGGGGT 59.629 45.455 0.00 0.00 0.00 4.95
2083 5959 5.424121 GCATCTCGCAAAATTACAGGTAT 57.576 39.130 0.00 0.00 41.79 2.73
2117 5993 2.309755 ACCTCAAGGATGCCAATCTGAA 59.690 45.455 2.30 0.00 38.94 3.02
2122 5998 3.242011 ACAAAACCTCAAGGATGCCAAT 58.758 40.909 2.30 0.00 38.94 3.16
2125 6001 5.652452 AGTATTACAAAACCTCAAGGATGCC 59.348 40.000 2.30 0.00 38.94 4.40
2133 6009 6.869695 TCTATGCGAGTATTACAAAACCTCA 58.130 36.000 0.00 0.00 0.00 3.86
2156 6033 6.595716 ACAGCAACTATGTCCTCAAAACTATC 59.404 38.462 0.00 0.00 0.00 2.08
2160 6037 5.215160 CAACAGCAACTATGTCCTCAAAAC 58.785 41.667 0.00 0.00 0.00 2.43
2167 6044 3.939066 AGTACCAACAGCAACTATGTCC 58.061 45.455 0.00 0.00 0.00 4.02
2192 6069 4.915085 CGGACACGAGCAATTTAATTTGTT 59.085 37.500 10.80 5.72 44.60 2.83
2199 6076 1.001068 TGTCCGGACACGAGCAATTTA 59.999 47.619 33.23 5.92 44.60 1.40
2211 6089 1.234821 TTCAGCACATTTGTCCGGAC 58.765 50.000 28.17 28.17 0.00 4.79
2215 6093 4.574599 AGAAGTTTCAGCACATTTGTCC 57.425 40.909 0.00 0.00 0.00 4.02
2216 6094 6.268566 AGAAAGAAGTTTCAGCACATTTGTC 58.731 36.000 1.03 0.00 44.08 3.18
2217 6095 6.212888 AGAAAGAAGTTTCAGCACATTTGT 57.787 33.333 1.03 0.00 44.08 2.83
2219 6097 6.866480 TGAAGAAAGAAGTTTCAGCACATTT 58.134 32.000 1.03 0.00 44.08 2.32
2225 6107 5.923114 GGGAATTGAAGAAAGAAGTTTCAGC 59.077 40.000 1.03 0.00 44.08 4.26
2241 6123 4.917385 TCTCTTTGGAATTCGGGAATTGA 58.083 39.130 11.13 2.08 40.77 2.57
2249 6131 2.369394 CCCCCTTCTCTTTGGAATTCG 58.631 52.381 0.00 0.00 0.00 3.34
2267 6149 1.222113 GCAGGTACAGAAGCTCCCC 59.778 63.158 0.00 0.00 32.16 4.81
2269 6151 1.486211 TAGGCAGGTACAGAAGCTCC 58.514 55.000 0.00 0.00 32.16 4.70
2304 6259 7.926674 TGAATTAGTCATTCTGCATCTGAAA 57.073 32.000 0.00 0.00 41.91 2.69
2307 6262 9.438228 AGATATGAATTAGTCATTCTGCATCTG 57.562 33.333 0.00 0.00 45.13 2.90
2347 6302 9.539825 GTGATGAACTATTTAGATGTGACATCT 57.460 33.333 28.69 28.69 33.72 2.90
2348 6303 9.317936 TGTGATGAACTATTTAGATGTGACATC 57.682 33.333 17.46 17.46 33.46 3.06
2349 6304 9.842775 ATGTGATGAACTATTTAGATGTGACAT 57.157 29.630 0.00 0.00 0.00 3.06
2418 6373 9.448438 AGCATGACACTTATACAACATTAGAAA 57.552 29.630 0.00 0.00 0.00 2.52
2419 6374 9.448438 AAGCATGACACTTATACAACATTAGAA 57.552 29.630 0.00 0.00 0.00 2.10
2423 6378 9.618890 ATCTAAGCATGACACTTATACAACATT 57.381 29.630 0.00 0.00 0.00 2.71
2424 6379 9.049523 CATCTAAGCATGACACTTATACAACAT 57.950 33.333 0.00 0.00 0.00 2.71
2425 6380 8.040727 ACATCTAAGCATGACACTTATACAACA 58.959 33.333 0.00 0.00 0.00 3.33
2426 6381 8.331022 CACATCTAAGCATGACACTTATACAAC 58.669 37.037 0.00 0.00 0.00 3.32
2427 6382 7.495606 CCACATCTAAGCATGACACTTATACAA 59.504 37.037 0.00 0.00 0.00 2.41
2428 6383 6.986231 CCACATCTAAGCATGACACTTATACA 59.014 38.462 0.00 0.00 0.00 2.29
2429 6384 6.073548 GCCACATCTAAGCATGACACTTATAC 60.074 42.308 0.00 0.00 0.00 1.47
2430 6385 5.991606 GCCACATCTAAGCATGACACTTATA 59.008 40.000 0.00 0.00 0.00 0.98
2441 6396 4.142026 ACGTAACTATGCCACATCTAAGCA 60.142 41.667 0.00 0.00 41.50 3.91
2442 6397 4.369182 ACGTAACTATGCCACATCTAAGC 58.631 43.478 0.00 0.00 0.00 3.09
2444 6399 5.105675 TGTGACGTAACTATGCCACATCTAA 60.106 40.000 4.30 0.00 30.67 2.10
2446 6401 3.194755 TGTGACGTAACTATGCCACATCT 59.805 43.478 4.30 0.00 30.67 2.90
2447 6402 3.517602 TGTGACGTAACTATGCCACATC 58.482 45.455 4.30 0.00 30.67 3.06
2448 6403 3.603158 TGTGACGTAACTATGCCACAT 57.397 42.857 4.30 0.00 30.67 3.21
2449 6404 3.194755 AGATGTGACGTAACTATGCCACA 59.805 43.478 4.30 4.76 38.63 4.17
2450 6405 3.782046 AGATGTGACGTAACTATGCCAC 58.218 45.455 4.30 0.00 0.00 5.01
2451 6406 4.885325 TCTAGATGTGACGTAACTATGCCA 59.115 41.667 4.30 0.00 0.00 4.92
2452 6407 5.434352 TCTAGATGTGACGTAACTATGCC 57.566 43.478 4.30 0.00 0.00 4.40
2454 6409 7.866729 ACTCATCTAGATGTGACGTAACTATG 58.133 38.462 31.51 7.64 39.72 2.23
2455 6410 7.173562 GGACTCATCTAGATGTGACGTAACTAT 59.826 40.741 31.51 13.01 39.72 2.12
2456 6411 6.482641 GGACTCATCTAGATGTGACGTAACTA 59.517 42.308 31.51 11.24 39.72 2.24
2458 6413 5.297278 AGGACTCATCTAGATGTGACGTAAC 59.703 44.000 31.51 17.19 39.72 2.50
2459 6414 5.437946 AGGACTCATCTAGATGTGACGTAA 58.562 41.667 31.51 13.08 39.72 3.18
2461 6416 3.892284 AGGACTCATCTAGATGTGACGT 58.108 45.455 31.51 25.16 39.72 4.34
2462 6417 5.278071 GGTTAGGACTCATCTAGATGTGACG 60.278 48.000 31.51 20.35 39.72 4.35
2463 6418 5.594725 TGGTTAGGACTCATCTAGATGTGAC 59.405 44.000 31.51 26.28 39.72 3.67
2465 6420 5.360999 TGTGGTTAGGACTCATCTAGATGTG 59.639 44.000 27.80 26.80 39.72 3.21
2466 6421 5.361285 GTGTGGTTAGGACTCATCTAGATGT 59.639 44.000 27.80 13.30 39.72 3.06
2467 6422 5.221342 GGTGTGGTTAGGACTCATCTAGATG 60.221 48.000 24.32 24.32 40.09 2.90
2468 6423 4.896482 GGTGTGGTTAGGACTCATCTAGAT 59.104 45.833 0.00 0.00 0.00 1.98
2469 6424 4.279145 GGTGTGGTTAGGACTCATCTAGA 58.721 47.826 0.00 0.00 0.00 2.43
2470 6425 3.385111 GGGTGTGGTTAGGACTCATCTAG 59.615 52.174 0.00 0.00 0.00 2.43
2471 6426 3.012502 AGGGTGTGGTTAGGACTCATCTA 59.987 47.826 0.00 0.00 0.00 1.98
2473 6428 2.188817 AGGGTGTGGTTAGGACTCATC 58.811 52.381 0.00 0.00 0.00 2.92
2474 6429 2.344093 AGGGTGTGGTTAGGACTCAT 57.656 50.000 0.00 0.00 0.00 2.90
2476 6431 2.370849 TGAAAGGGTGTGGTTAGGACTC 59.629 50.000 0.00 0.00 0.00 3.36
2477 6432 2.372172 CTGAAAGGGTGTGGTTAGGACT 59.628 50.000 0.00 0.00 0.00 3.85
2478 6433 2.370849 TCTGAAAGGGTGTGGTTAGGAC 59.629 50.000 0.00 0.00 0.00 3.85
2479 6434 2.696775 TCTGAAAGGGTGTGGTTAGGA 58.303 47.619 0.00 0.00 0.00 2.94
2480 6435 3.244911 ACATCTGAAAGGGTGTGGTTAGG 60.245 47.826 0.00 0.00 33.18 2.69
2481 6436 3.753272 CACATCTGAAAGGGTGTGGTTAG 59.247 47.826 0.00 0.00 42.89 2.34
2482 6437 3.750371 CACATCTGAAAGGGTGTGGTTA 58.250 45.455 0.00 0.00 42.89 2.85
2484 6439 2.276732 CACATCTGAAAGGGTGTGGT 57.723 50.000 0.00 0.00 42.89 4.16
2488 6443 2.169832 ACGACACATCTGAAAGGGTG 57.830 50.000 0.00 0.00 42.63 4.61
2489 6444 2.930826 AACGACACATCTGAAAGGGT 57.069 45.000 0.00 0.00 0.00 4.34
2490 6445 3.815401 AGAAAACGACACATCTGAAAGGG 59.185 43.478 0.00 0.00 0.00 3.95
2491 6446 5.424121 AAGAAAACGACACATCTGAAAGG 57.576 39.130 0.00 0.00 0.00 3.11
2492 6447 5.682862 CCAAAGAAAACGACACATCTGAAAG 59.317 40.000 0.00 0.00 0.00 2.62
2536 6684 2.346847 CAGCACTGTTTCGTAGATGCTC 59.653 50.000 0.00 0.00 41.32 4.26
2539 6687 2.341257 AGCAGCACTGTTTCGTAGATG 58.659 47.619 0.00 0.00 35.04 2.90
2542 6690 2.029728 GCATAGCAGCACTGTTTCGTAG 59.970 50.000 0.00 0.00 0.00 3.51
2553 6701 0.391528 ACATCGTGTGCATAGCAGCA 60.392 50.000 0.00 0.00 40.08 4.41
2554 6702 0.729116 AACATCGTGTGCATAGCAGC 59.271 50.000 0.00 0.00 40.08 5.25
2555 6703 2.001872 TCAACATCGTGTGCATAGCAG 58.998 47.619 0.00 0.00 40.08 4.24
2556 6704 1.731709 GTCAACATCGTGTGCATAGCA 59.268 47.619 0.00 0.00 35.60 3.49
2557 6705 1.267038 CGTCAACATCGTGTGCATAGC 60.267 52.381 0.00 0.00 0.00 2.97
2558 6706 1.324435 CCGTCAACATCGTGTGCATAG 59.676 52.381 0.00 0.00 0.00 2.23
2559 6707 1.067495 TCCGTCAACATCGTGTGCATA 60.067 47.619 0.00 0.00 0.00 3.14
2560 6708 0.320334 TCCGTCAACATCGTGTGCAT 60.320 50.000 0.00 0.00 0.00 3.96
2561 6709 1.068250 TCCGTCAACATCGTGTGCA 59.932 52.632 0.00 0.00 0.00 4.57
2562 6710 1.491563 GTCCGTCAACATCGTGTGC 59.508 57.895 0.00 0.00 0.00 4.57
2563 6711 0.662077 TCGTCCGTCAACATCGTGTG 60.662 55.000 0.00 0.00 0.00 3.82
2564 6712 0.242825 ATCGTCCGTCAACATCGTGT 59.757 50.000 0.00 0.00 0.00 4.49
2565 6713 1.346365 AATCGTCCGTCAACATCGTG 58.654 50.000 0.00 0.00 0.00 4.35
2566 6714 1.724623 CAAATCGTCCGTCAACATCGT 59.275 47.619 0.00 0.00 0.00 3.73
2567 6715 1.724623 ACAAATCGTCCGTCAACATCG 59.275 47.619 0.00 0.00 0.00 3.84
2568 6716 2.159707 CCACAAATCGTCCGTCAACATC 60.160 50.000 0.00 0.00 0.00 3.06
2569 6717 1.804151 CCACAAATCGTCCGTCAACAT 59.196 47.619 0.00 0.00 0.00 2.71
2570 6718 1.202545 TCCACAAATCGTCCGTCAACA 60.203 47.619 0.00 0.00 0.00 3.33
2571 6719 1.193874 GTCCACAAATCGTCCGTCAAC 59.806 52.381 0.00 0.00 0.00 3.18
2572 6720 1.504359 GTCCACAAATCGTCCGTCAA 58.496 50.000 0.00 0.00 0.00 3.18
2573 6721 0.665068 CGTCCACAAATCGTCCGTCA 60.665 55.000 0.00 0.00 0.00 4.35
2574 6722 0.387622 TCGTCCACAAATCGTCCGTC 60.388 55.000 0.00 0.00 0.00 4.79
2575 6723 0.665369 GTCGTCCACAAATCGTCCGT 60.665 55.000 0.00 0.00 0.00 4.69
2576 6724 0.665068 TGTCGTCCACAAATCGTCCG 60.665 55.000 0.00 0.00 29.30 4.79
2577 6725 1.068474 CTGTCGTCCACAAATCGTCC 58.932 55.000 0.00 0.00 33.31 4.79
2578 6726 0.438830 GCTGTCGTCCACAAATCGTC 59.561 55.000 0.00 0.00 33.31 4.20
2579 6727 0.249699 TGCTGTCGTCCACAAATCGT 60.250 50.000 0.00 0.00 33.31 3.73
2580 6728 0.163788 GTGCTGTCGTCCACAAATCG 59.836 55.000 0.00 0.00 33.31 3.34
2581 6729 1.512926 AGTGCTGTCGTCCACAAATC 58.487 50.000 0.00 0.00 33.31 2.17
2582 6730 1.967319 AAGTGCTGTCGTCCACAAAT 58.033 45.000 0.00 0.00 33.31 2.32
2583 6731 2.605837 TAAGTGCTGTCGTCCACAAA 57.394 45.000 0.00 0.00 33.31 2.83
2584 6732 2.036604 TGATAAGTGCTGTCGTCCACAA 59.963 45.455 0.00 0.00 33.31 3.33
2585 6733 1.616374 TGATAAGTGCTGTCGTCCACA 59.384 47.619 0.00 0.00 34.48 4.17
2586 6734 2.094700 TCTGATAAGTGCTGTCGTCCAC 60.095 50.000 0.00 0.00 0.00 4.02
2587 6735 2.167662 TCTGATAAGTGCTGTCGTCCA 58.832 47.619 0.00 0.00 0.00 4.02
2588 6736 2.941453 TCTGATAAGTGCTGTCGTCC 57.059 50.000 0.00 0.00 0.00 4.79
2589 6737 3.039405 CGATCTGATAAGTGCTGTCGTC 58.961 50.000 0.00 0.00 0.00 4.20
2590 6738 2.423892 ACGATCTGATAAGTGCTGTCGT 59.576 45.455 0.00 0.00 36.39 4.34
2591 6739 3.039405 GACGATCTGATAAGTGCTGTCG 58.961 50.000 3.42 0.00 0.00 4.35
2592 6740 3.181486 TGGACGATCTGATAAGTGCTGTC 60.181 47.826 14.70 5.22 0.00 3.51
2593 6741 2.760650 TGGACGATCTGATAAGTGCTGT 59.239 45.455 14.70 0.00 0.00 4.40
2594 6742 3.443099 TGGACGATCTGATAAGTGCTG 57.557 47.619 14.70 0.00 0.00 4.41
2595 6743 3.801638 GCATGGACGATCTGATAAGTGCT 60.802 47.826 14.70 2.94 0.00 4.40
2596 6744 2.478134 GCATGGACGATCTGATAAGTGC 59.522 50.000 9.28 9.28 0.00 4.40
2597 6745 3.721035 TGCATGGACGATCTGATAAGTG 58.279 45.455 0.00 0.00 0.00 3.16
2598 6746 4.613925 ATGCATGGACGATCTGATAAGT 57.386 40.909 0.00 0.00 0.00 2.24
2599 6747 4.565962 GCTATGCATGGACGATCTGATAAG 59.434 45.833 15.09 0.00 0.00 1.73
2600 6748 4.021192 TGCTATGCATGGACGATCTGATAA 60.021 41.667 15.09 0.00 31.71 1.75
2601 6749 3.511146 TGCTATGCATGGACGATCTGATA 59.489 43.478 15.09 0.00 31.71 2.15
2602 6750 2.301009 TGCTATGCATGGACGATCTGAT 59.699 45.455 15.09 0.00 31.71 2.90
2603 6751 1.688197 TGCTATGCATGGACGATCTGA 59.312 47.619 15.09 0.00 31.71 3.27
2604 6752 2.159327 TGCTATGCATGGACGATCTG 57.841 50.000 15.09 0.00 31.71 2.90
2612 6760 6.939377 AACTACGGTTTGATGCTATGCATGG 61.939 44.000 10.16 7.77 40.01 3.66
2613 6761 4.035558 AACTACGGTTTGATGCTATGCATG 59.964 41.667 10.16 0.26 40.01 4.06
2614 6762 4.035558 CAACTACGGTTTGATGCTATGCAT 59.964 41.667 3.79 3.79 42.03 3.96
2615 6763 3.260475 ACTACGGTTTGATGCTATGCA 57.740 42.857 0.00 0.00 44.86 3.96
2616 6764 3.621268 TCAACTACGGTTTGATGCTATGC 59.379 43.478 0.00 0.00 32.73 3.14
2617 6765 5.143916 GTCAACTACGGTTTGATGCTATG 57.856 43.478 0.00 0.00 32.73 2.23
2631 6779 0.727398 GCAATCCAGCCGTCAACTAC 59.273 55.000 0.00 0.00 0.00 2.73
2632 6780 0.392461 GGCAATCCAGCCGTCAACTA 60.392 55.000 0.00 0.00 46.12 2.24
2633 6781 1.675641 GGCAATCCAGCCGTCAACT 60.676 57.895 0.00 0.00 46.12 3.16
2634 6782 2.877691 GGCAATCCAGCCGTCAAC 59.122 61.111 0.00 0.00 46.12 3.18
2641 6789 3.195698 GACGACGGGCAATCCAGC 61.196 66.667 0.00 0.00 34.36 4.85
2642 6790 1.519455 GAGACGACGGGCAATCCAG 60.519 63.158 0.00 0.00 34.36 3.86
2643 6791 2.279810 TGAGACGACGGGCAATCCA 61.280 57.895 0.00 0.00 34.36 3.41
2644 6792 1.810030 GTGAGACGACGGGCAATCC 60.810 63.158 0.00 0.00 0.00 3.01
2645 6793 1.078759 CAGTGAGACGACGGGCAATC 61.079 60.000 0.00 0.00 0.00 2.67
2646 6794 1.079819 CAGTGAGACGACGGGCAAT 60.080 57.895 0.00 0.00 0.00 3.56
2647 6795 2.338620 CAGTGAGACGACGGGCAA 59.661 61.111 0.00 0.00 0.00 4.52
2648 6796 2.910479 ACAGTGAGACGACGGGCA 60.910 61.111 0.00 0.00 0.00 5.36
2649 6797 2.126424 GACAGTGAGACGACGGGC 60.126 66.667 0.00 0.00 0.00 6.13
2650 6798 2.176055 CGACAGTGAGACGACGGG 59.824 66.667 0.00 0.00 37.60 5.28
2651 6799 2.944429 ACGACAGTGAGACGACGG 59.056 61.111 13.54 0.00 38.73 4.79
2676 6824 1.821241 CTGCTGTGTGGACGACAACG 61.821 60.000 0.00 0.00 45.75 4.10
2677 6825 0.810031 ACTGCTGTGTGGACGACAAC 60.810 55.000 0.00 0.00 35.91 3.32
2678 6826 0.107897 AACTGCTGTGTGGACGACAA 60.108 50.000 0.00 0.00 35.91 3.18
2679 6827 0.107897 AAACTGCTGTGTGGACGACA 60.108 50.000 0.00 0.00 0.00 4.35
2680 6828 0.582005 GAAACTGCTGTGTGGACGAC 59.418 55.000 0.00 0.00 0.00 4.34
2681 6829 0.874175 CGAAACTGCTGTGTGGACGA 60.874 55.000 0.00 0.00 0.00 4.20
2682 6830 1.151777 ACGAAACTGCTGTGTGGACG 61.152 55.000 2.91 5.20 0.00 4.79
2683 6831 0.582005 GACGAAACTGCTGTGTGGAC 59.418 55.000 2.91 0.00 0.00 4.02
2684 6832 0.464036 AGACGAAACTGCTGTGTGGA 59.536 50.000 2.91 0.00 0.00 4.02
2685 6833 1.792949 GTAGACGAAACTGCTGTGTGG 59.207 52.381 0.00 0.00 0.00 4.17
2686 6834 1.452025 CGTAGACGAAACTGCTGTGTG 59.548 52.381 0.00 0.00 43.02 3.82
2687 6835 1.335810 TCGTAGACGAAACTGCTGTGT 59.664 47.619 1.51 0.00 46.30 3.72
2688 6836 2.046283 TCGTAGACGAAACTGCTGTG 57.954 50.000 1.51 0.00 46.30 3.66
2699 6847 6.392498 CGTGATCTGTTTTATTTCGTAGACG 58.608 40.000 0.00 0.00 34.32 4.18
2700 6848 6.176453 GCGTGATCTGTTTTATTTCGTAGAC 58.824 40.000 0.00 0.00 34.32 2.59
2701 6849 5.865013 TGCGTGATCTGTTTTATTTCGTAGA 59.135 36.000 0.00 0.00 0.00 2.59
2702 6850 6.089920 TGCGTGATCTGTTTTATTTCGTAG 57.910 37.500 0.00 0.00 0.00 3.51
2703 6851 6.091577 ACATGCGTGATCTGTTTTATTTCGTA 59.908 34.615 14.17 0.00 0.00 3.43
2704 6852 5.106712 ACATGCGTGATCTGTTTTATTTCGT 60.107 36.000 14.17 0.00 0.00 3.85
2705 6853 5.323900 ACATGCGTGATCTGTTTTATTTCG 58.676 37.500 14.17 0.00 0.00 3.46
2706 6854 6.314018 TGACATGCGTGATCTGTTTTATTTC 58.686 36.000 14.17 0.00 0.00 2.17
2707 6855 6.252967 TGACATGCGTGATCTGTTTTATTT 57.747 33.333 14.17 0.00 0.00 1.40
2708 6856 5.878332 TGACATGCGTGATCTGTTTTATT 57.122 34.783 14.17 0.00 0.00 1.40
2709 6857 7.734924 ATATGACATGCGTGATCTGTTTTAT 57.265 32.000 14.17 0.00 0.00 1.40
2722 6870 7.633621 AGTTTTCATGAAGTATATGACATGCG 58.366 34.615 8.41 0.00 39.60 4.73
2728 6876 8.206867 AGCTGCTAGTTTTCATGAAGTATATGA 58.793 33.333 8.41 0.00 33.00 2.15
2729 6877 8.375608 AGCTGCTAGTTTTCATGAAGTATATG 57.624 34.615 8.41 0.86 0.00 1.78
2762 6911 5.937540 ACAATGTGCTGCTATAGTGTTTACA 59.062 36.000 0.00 2.14 0.00 2.41
2826 6976 0.962356 CAGGCAATCACCCACAGGAC 60.962 60.000 0.00 0.00 36.73 3.85
2842 6992 1.768870 AGGATTCCCGTACCAATCAGG 59.231 52.381 0.00 0.00 39.79 3.86
2843 6993 3.206150 CAAGGATTCCCGTACCAATCAG 58.794 50.000 0.00 0.00 37.58 2.90
2844 6994 2.682563 GCAAGGATTCCCGTACCAATCA 60.683 50.000 0.00 0.00 37.58 2.57
2845 6995 1.947456 GCAAGGATTCCCGTACCAATC 59.053 52.381 0.00 0.00 37.58 2.67
2846 6996 1.745827 CGCAAGGATTCCCGTACCAAT 60.746 52.381 0.00 0.00 37.58 3.16
2847 6997 0.391927 CGCAAGGATTCCCGTACCAA 60.392 55.000 0.00 0.00 37.58 3.67
2848 6998 1.219664 CGCAAGGATTCCCGTACCA 59.780 57.895 0.00 0.00 37.58 3.25
2849 6999 1.087771 CACGCAAGGATTCCCGTACC 61.088 60.000 5.36 0.00 46.39 3.34
2850 7000 0.390735 ACACGCAAGGATTCCCGTAC 60.391 55.000 5.36 0.00 46.39 3.67
2851 7001 0.322322 AACACGCAAGGATTCCCGTA 59.678 50.000 5.36 0.00 46.39 4.02
2852 7002 0.953960 GAACACGCAAGGATTCCCGT 60.954 55.000 0.00 0.00 46.39 5.28
2853 7003 0.953471 TGAACACGCAAGGATTCCCG 60.953 55.000 0.00 0.00 46.39 5.14
2854 7004 0.521735 GTGAACACGCAAGGATTCCC 59.478 55.000 0.00 0.00 46.39 3.97
2889 7039 1.337071 ACCGATACAGGACGCATACAG 59.663 52.381 0.00 0.00 34.73 2.74
2891 7041 2.503920 AACCGATACAGGACGCATAC 57.496 50.000 0.00 0.00 34.73 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.