Multiple sequence alignment - TraesCS3B01G320900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G320900 chr3B 100.000 6024 0 0 1 6024 519864585 519858562 0.000000e+00 11125.0
1 TraesCS3B01G320900 chr3B 91.176 816 56 4 1 807 799301023 799300215 0.000000e+00 1094.0
2 TraesCS3B01G320900 chr3B 89.914 813 62 6 1 805 825577030 825577830 0.000000e+00 1029.0
3 TraesCS3B01G320900 chr3B 89.299 813 72 3 1 805 519364290 519363485 0.000000e+00 1005.0
4 TraesCS3B01G320900 chr3B 85.667 600 69 6 217 808 757484144 757483554 3.090000e-172 616.0
5 TraesCS3B01G320900 chr3B 82.948 346 40 13 2380 2725 147675712 147676038 1.640000e-75 294.0
6 TraesCS3B01G320900 chr3D 94.974 2845 98 19 837 3658 395082972 395080150 0.000000e+00 4420.0
7 TraesCS3B01G320900 chr3D 91.144 1547 72 23 4500 6024 395079698 395078195 0.000000e+00 2037.0
8 TraesCS3B01G320900 chr3D 90.074 816 66 8 1 808 593640660 593639852 0.000000e+00 1044.0
9 TraesCS3B01G320900 chr3D 88.020 818 77 10 1 808 570158020 570157214 0.000000e+00 948.0
10 TraesCS3B01G320900 chr3D 90.045 442 21 12 3911 4342 395080124 395079696 8.820000e-153 551.0
11 TraesCS3B01G320900 chr3D 82.332 566 78 6 2160 2724 377207443 377206899 7.070000e-129 472.0
12 TraesCS3B01G320900 chr3D 88.398 181 17 4 4341 4519 384865886 384865708 1.310000e-51 215.0
13 TraesCS3B01G320900 chr3A 95.867 1234 40 5 1933 3156 514626749 514625517 0.000000e+00 1986.0
14 TraesCS3B01G320900 chr3A 93.942 1106 46 6 837 1927 514628166 514627067 0.000000e+00 1652.0
15 TraesCS3B01G320900 chr3A 88.872 1321 75 18 4500 5793 514624434 514623159 0.000000e+00 1559.0
16 TraesCS3B01G320900 chr3A 95.238 525 15 3 3153 3677 514625357 514624843 0.000000e+00 822.0
17 TraesCS3B01G320900 chr3A 89.906 426 23 10 3927 4342 514624847 514624432 1.150000e-146 531.0
18 TraesCS3B01G320900 chr3A 88.302 265 24 6 3672 3930 603606550 603606813 1.630000e-80 311.0
19 TraesCS3B01G320900 chr1D 90.754 822 58 7 1 811 296632039 296632853 0.000000e+00 1081.0
20 TraesCS3B01G320900 chr1D 88.889 180 18 2 4324 4502 103408896 103408718 2.830000e-53 220.0
21 TraesCS3B01G320900 chr4D 91.244 788 59 6 1 780 346203774 346204559 0.000000e+00 1064.0
22 TraesCS3B01G320900 chr5B 90.453 817 59 9 1 808 505218785 505219591 0.000000e+00 1059.0
23 TraesCS3B01G320900 chr5B 87.970 266 25 4 3671 3930 121249765 121249501 2.110000e-79 307.0
24 TraesCS3B01G320900 chr7B 89.594 788 73 7 1 780 7746635 7745849 0.000000e+00 992.0
25 TraesCS3B01G320900 chr7B 82.948 346 40 13 2380 2725 699543678 699543352 1.640000e-75 294.0
26 TraesCS3B01G320900 chr6B 89.053 813 68 13 1 805 624136119 624135320 0.000000e+00 989.0
27 TraesCS3B01G320900 chr6B 87.541 610 53 4 207 808 56969969 56969375 0.000000e+00 684.0
28 TraesCS3B01G320900 chr2A 89.507 791 68 6 1 780 515503675 515502889 0.000000e+00 987.0
29 TraesCS3B01G320900 chr5A 88.930 813 68 9 1 805 531896630 531895832 0.000000e+00 983.0
30 TraesCS3B01G320900 chr5A 81.905 105 11 6 2578 2682 32156651 32156747 1.390000e-11 82.4
31 TraesCS3B01G320900 chr7D 84.967 459 58 5 352 808 566258691 566258242 7.120000e-124 455.0
32 TraesCS3B01G320900 chr7D 87.640 267 27 3 3671 3932 96378916 96378651 7.590000e-79 305.0
33 TraesCS3B01G320900 chr7D 92.262 168 11 2 4341 4507 566026575 566026741 2.810000e-58 237.0
34 TraesCS3B01G320900 chr7D 90.230 174 17 0 4337 4510 183790258 183790431 1.690000e-55 228.0
35 TraesCS3B01G320900 chr1A 88.806 268 20 6 3675 3934 434422939 434422674 2.710000e-83 320.0
36 TraesCS3B01G320900 chr1A 87.640 267 28 2 3672 3933 333917871 333918137 7.590000e-79 305.0
37 TraesCS3B01G320900 chr1A 91.716 169 13 1 4338 4505 291255987 291255819 3.630000e-57 233.0
38 TraesCS3B01G320900 chr5D 88.550 262 25 3 3675 3931 397224534 397224795 4.530000e-81 313.0
39 TraesCS3B01G320900 chr5D 88.506 261 22 4 3675 3928 397198104 397198363 5.860000e-80 309.0
40 TraesCS3B01G320900 chr5D 91.617 167 14 0 4339 4505 461072765 461072599 1.310000e-56 231.0
41 TraesCS3B01G320900 chr2D 88.506 261 24 3 3679 3933 406639786 406640046 1.630000e-80 311.0
42 TraesCS3B01G320900 chr2D 92.683 164 10 2 4340 4502 498472996 498473158 1.010000e-57 235.0
43 TraesCS3B01G320900 chrUn 87.925 265 27 2 3671 3930 24269867 24270131 2.110000e-79 307.0
44 TraesCS3B01G320900 chrUn 82.421 347 42 11 2380 2725 83921144 83921472 9.880000e-73 285.0
45 TraesCS3B01G320900 chrUn 81.443 194 28 7 4341 4531 101377779 101377967 1.050000e-32 152.0
46 TraesCS3B01G320900 chr1B 82.659 346 41 13 2380 2725 595495528 595495202 7.640000e-74 289.0
47 TraesCS3B01G320900 chr6A 93.293 164 11 0 4341 4504 442395716 442395553 6.030000e-60 243.0
48 TraesCS3B01G320900 chr4A 91.813 171 10 2 4338 4504 101750310 101750480 1.010000e-57 235.0
49 TraesCS3B01G320900 chr6D 90.643 171 16 0 4332 4502 460745096 460744926 1.690000e-55 228.0
50 TraesCS3B01G320900 chr6D 75.676 185 36 9 4341 4521 379517014 379516835 3.870000e-12 84.2
51 TraesCS3B01G320900 chr4B 80.952 273 34 7 2453 2725 24338700 24338446 3.680000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G320900 chr3B 519858562 519864585 6023 True 11125 11125 100.000000 1 6024 1 chr3B.!!$R2 6023
1 TraesCS3B01G320900 chr3B 799300215 799301023 808 True 1094 1094 91.176000 1 807 1 chr3B.!!$R4 806
2 TraesCS3B01G320900 chr3B 825577030 825577830 800 False 1029 1029 89.914000 1 805 1 chr3B.!!$F2 804
3 TraesCS3B01G320900 chr3B 519363485 519364290 805 True 1005 1005 89.299000 1 805 1 chr3B.!!$R1 804
4 TraesCS3B01G320900 chr3B 757483554 757484144 590 True 616 616 85.667000 217 808 1 chr3B.!!$R3 591
5 TraesCS3B01G320900 chr3D 395078195 395082972 4777 True 2336 4420 92.054333 837 6024 3 chr3D.!!$R5 5187
6 TraesCS3B01G320900 chr3D 593639852 593640660 808 True 1044 1044 90.074000 1 808 1 chr3D.!!$R4 807
7 TraesCS3B01G320900 chr3D 570157214 570158020 806 True 948 948 88.020000 1 808 1 chr3D.!!$R3 807
8 TraesCS3B01G320900 chr3D 377206899 377207443 544 True 472 472 82.332000 2160 2724 1 chr3D.!!$R1 564
9 TraesCS3B01G320900 chr3A 514623159 514628166 5007 True 1310 1986 92.765000 837 5793 5 chr3A.!!$R1 4956
10 TraesCS3B01G320900 chr1D 296632039 296632853 814 False 1081 1081 90.754000 1 811 1 chr1D.!!$F1 810
11 TraesCS3B01G320900 chr4D 346203774 346204559 785 False 1064 1064 91.244000 1 780 1 chr4D.!!$F1 779
12 TraesCS3B01G320900 chr5B 505218785 505219591 806 False 1059 1059 90.453000 1 808 1 chr5B.!!$F1 807
13 TraesCS3B01G320900 chr7B 7745849 7746635 786 True 992 992 89.594000 1 780 1 chr7B.!!$R1 779
14 TraesCS3B01G320900 chr6B 624135320 624136119 799 True 989 989 89.053000 1 805 1 chr6B.!!$R2 804
15 TraesCS3B01G320900 chr6B 56969375 56969969 594 True 684 684 87.541000 207 808 1 chr6B.!!$R1 601
16 TraesCS3B01G320900 chr2A 515502889 515503675 786 True 987 987 89.507000 1 780 1 chr2A.!!$R1 779
17 TraesCS3B01G320900 chr5A 531895832 531896630 798 True 983 983 88.930000 1 805 1 chr5A.!!$R1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 482 0.179067 GGACACAGGTTCACCACGAA 60.179 55.0 0.0 0.0 38.89 3.85 F
817 841 0.320771 GAAAGCGACCTGAAGCTGGA 60.321 55.0 0.0 0.0 43.78 3.86 F
818 842 0.326264 AAAGCGACCTGAAGCTGGAT 59.674 50.0 0.0 0.0 43.78 3.41 F
820 844 0.326264 AGCGACCTGAAGCTGGATTT 59.674 50.0 0.0 0.0 42.82 2.17 F
1583 1629 0.530744 ACGCATTCTCTAGTTCGGCA 59.469 50.0 0.0 0.0 0.00 5.69 F
3365 3897 2.632987 AACGGCCTTAGAACTGTTGT 57.367 45.0 0.0 0.0 34.15 3.32 F
3695 4227 0.029300 CGCCCTCCGTTGCATAATTG 59.971 55.0 0.0 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1720 1766 0.681564 CTCCTAGCTCGGTGTGTCCT 60.682 60.000 3.89 0.00 0.00 3.85 R
2545 2911 2.163211 GGGAGAAATGAGCTCAGCAAAC 59.837 50.000 22.96 12.59 34.07 2.93 R
2767 3133 9.853555 TGAAACAATAAAATCTTAACGATGCAT 57.146 25.926 0.00 0.00 31.20 3.96 R
3049 3417 2.486951 TAGCTCGCATACCTCGTTTC 57.513 50.000 0.00 0.00 0.00 2.78 R
3676 4208 0.029300 CAATTATGCAACGGAGGGCG 59.971 55.000 0.00 0.00 34.69 6.13 R
4276 4816 0.400093 ATACCACTACTCAGGGCCCC 60.400 60.000 21.43 0.00 0.00 5.80 R
5381 5952 0.610232 GGAGTGGGCTGTCTGCAAAT 60.610 55.000 3.96 0.00 45.15 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 2.884639 CACCAAAGGAGAAAATGACGGT 59.115 45.455 0.00 0.00 0.00 4.83
313 317 8.629844 CAACTAAGACGTTGGAGGAGGAAACT 62.630 46.154 0.00 0.00 41.46 2.66
376 380 1.269465 CCAGATGTCGTCGATGCAGAT 60.269 52.381 0.00 0.00 0.00 2.90
478 482 0.179067 GGACACAGGTTCACCACGAA 60.179 55.000 0.00 0.00 38.89 3.85
519 526 5.869344 CGTCATCCTTACTTGAACAATCTGA 59.131 40.000 0.00 0.00 0.00 3.27
544 551 1.052617 AAATCCACCCCAAAAACGGG 58.947 50.000 0.00 0.00 46.94 5.28
573 581 6.610020 TCTCGTTGGGAAAGGATCTAAAGATA 59.390 38.462 0.00 0.00 34.37 1.98
624 632 2.479566 AGCCATGACGATGAACAACT 57.520 45.000 0.00 0.00 0.00 3.16
667 676 3.499157 GCCTAAAACAATCCACACGTGTA 59.501 43.478 22.90 7.35 0.00 2.90
670 679 6.496571 CCTAAAACAATCCACACGTGTAAAA 58.503 36.000 22.90 10.09 0.00 1.52
713 732 2.050934 GTCGTTAGCGGAGGGGAGT 61.051 63.158 0.00 0.00 38.89 3.85
749 772 3.470888 GAGGAAGGCGCCCTAGCA 61.471 66.667 26.15 0.00 39.83 3.49
811 835 3.139077 GGAAGAAAGAAAGCGACCTGAA 58.861 45.455 0.00 0.00 0.00 3.02
812 836 3.187432 GGAAGAAAGAAAGCGACCTGAAG 59.813 47.826 0.00 0.00 0.00 3.02
813 837 2.147150 AGAAAGAAAGCGACCTGAAGC 58.853 47.619 0.00 0.00 0.00 3.86
814 838 2.147150 GAAAGAAAGCGACCTGAAGCT 58.853 47.619 0.00 0.00 46.97 3.74
815 839 1.517242 AAGAAAGCGACCTGAAGCTG 58.483 50.000 0.00 0.00 43.78 4.24
816 840 0.321122 AGAAAGCGACCTGAAGCTGG 60.321 55.000 0.00 0.00 43.78 4.85
817 841 0.320771 GAAAGCGACCTGAAGCTGGA 60.321 55.000 0.00 0.00 43.78 3.86
818 842 0.326264 AAAGCGACCTGAAGCTGGAT 59.674 50.000 0.00 0.00 43.78 3.41
819 843 0.326264 AAGCGACCTGAAGCTGGATT 59.674 50.000 0.00 0.00 43.78 3.01
820 844 0.326264 AGCGACCTGAAGCTGGATTT 59.674 50.000 0.00 0.00 42.82 2.17
821 845 1.168714 GCGACCTGAAGCTGGATTTT 58.831 50.000 0.00 0.00 0.00 1.82
822 846 1.131315 GCGACCTGAAGCTGGATTTTC 59.869 52.381 0.00 0.00 0.00 2.29
823 847 2.704572 CGACCTGAAGCTGGATTTTCT 58.295 47.619 0.00 0.00 0.00 2.52
824 848 2.675348 CGACCTGAAGCTGGATTTTCTC 59.325 50.000 0.00 0.00 0.00 2.87
825 849 3.618507 CGACCTGAAGCTGGATTTTCTCT 60.619 47.826 0.00 0.00 0.00 3.10
826 850 3.683802 ACCTGAAGCTGGATTTTCTCTG 58.316 45.455 0.00 0.00 0.00 3.35
827 851 3.073650 ACCTGAAGCTGGATTTTCTCTGT 59.926 43.478 0.00 0.00 0.00 3.41
828 852 4.287067 ACCTGAAGCTGGATTTTCTCTGTA 59.713 41.667 0.00 0.00 0.00 2.74
829 853 5.045286 ACCTGAAGCTGGATTTTCTCTGTAT 60.045 40.000 0.00 0.00 0.00 2.29
830 854 5.526846 CCTGAAGCTGGATTTTCTCTGTATC 59.473 44.000 0.00 0.00 0.00 2.24
831 855 5.111989 TGAAGCTGGATTTTCTCTGTATCG 58.888 41.667 0.00 0.00 0.00 2.92
832 856 4.065321 AGCTGGATTTTCTCTGTATCGG 57.935 45.455 0.00 0.00 0.00 4.18
833 857 3.134458 GCTGGATTTTCTCTGTATCGGG 58.866 50.000 0.00 0.00 0.00 5.14
834 858 3.134458 CTGGATTTTCTCTGTATCGGGC 58.866 50.000 0.00 0.00 0.00 6.13
835 859 2.503765 TGGATTTTCTCTGTATCGGGCA 59.496 45.455 0.00 0.00 0.00 5.36
850 874 4.735132 GCACGGGACTGCTGCGTA 62.735 66.667 0.00 0.00 34.06 4.42
963 987 2.589157 CCCGTAACCCTGGCTGACA 61.589 63.158 0.00 0.00 0.00 3.58
996 1020 3.268032 CACCTGCCCCTTTCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
1142 1170 0.755698 TCTCCATAGCGTCACCCTCC 60.756 60.000 0.00 0.00 0.00 4.30
1168 1196 4.692930 GGATTGCTTCCCATGCCT 57.307 55.556 0.00 0.00 38.75 4.75
1418 1463 2.290093 CTCGGTATTACTCTCCGACCAC 59.710 54.545 1.35 0.00 46.54 4.16
1521 1566 6.457528 GCAGTGCTCCATAATTACTTTCTGTC 60.458 42.308 8.18 0.00 0.00 3.51
1540 1586 3.937079 TGTCTCTGTGAAATATGCTGCTG 59.063 43.478 0.00 0.00 0.00 4.41
1565 1611 0.807496 GATCTTCAGGCTGTTGGCAC 59.193 55.000 15.27 0.00 44.01 5.01
1583 1629 0.530744 ACGCATTCTCTAGTTCGGCA 59.469 50.000 0.00 0.00 0.00 5.69
1642 1688 5.475719 TGAACTATTTTGTAGGGTGTCTCG 58.524 41.667 0.00 0.00 0.00 4.04
1643 1689 4.467198 ACTATTTTGTAGGGTGTCTCGG 57.533 45.455 0.00 0.00 0.00 4.63
1682 1728 2.735772 GGGGCTTCAGCGAGGATCA 61.736 63.158 0.00 0.00 43.26 2.92
1720 1766 3.173151 ACATACAGGGAGTCATGTCACA 58.827 45.455 3.69 0.00 38.88 3.58
1791 1837 5.728741 ACATCTCTCCCTATTTTCTGTTCCT 59.271 40.000 0.00 0.00 0.00 3.36
1795 1841 4.080863 TCTCCCTATTTTCTGTTCCTGCTC 60.081 45.833 0.00 0.00 0.00 4.26
1813 1859 5.584251 CCTGCTCTTCTCTCTTTTGGTAATC 59.416 44.000 0.00 0.00 0.00 1.75
1832 1878 4.660789 ATCCATAAAGGCTTGCATTGTC 57.339 40.909 0.00 0.00 37.29 3.18
1839 1885 5.726980 AAAGGCTTGCATTGTCTGATTTA 57.273 34.783 0.00 0.00 0.00 1.40
1843 1889 6.161381 AGGCTTGCATTGTCTGATTTAAAAG 58.839 36.000 0.00 0.00 0.00 2.27
1848 1894 9.199982 CTTGCATTGTCTGATTTAAAAGTTCAT 57.800 29.630 0.00 0.00 0.00 2.57
1980 2338 5.284660 GCAGTACTCAAATCTGAAATTTGCG 59.715 40.000 0.00 3.02 38.50 4.85
2230 2596 5.182001 GCTTGACTTTGGTGTAATGATGTCT 59.818 40.000 0.00 0.00 0.00 3.41
2249 2615 4.931601 TGTCTCATAGTGCAGTGTTTGATC 59.068 41.667 3.69 2.85 0.00 2.92
2298 2664 9.997482 TTATTCAAGACAACTACTTTTGTGTTC 57.003 29.630 0.00 0.00 40.08 3.18
2545 2911 8.696043 TTCAGGTTCCCTATGATTCAAATATG 57.304 34.615 0.00 0.00 29.64 1.78
2767 3133 5.670792 TTTCTTAGTCGAGAGCCCATTTA 57.329 39.130 0.00 0.00 0.00 1.40
3284 3816 8.853126 TGGATTTCTGGAATATTTGATTAGCTG 58.147 33.333 0.00 0.00 0.00 4.24
3365 3897 2.632987 AACGGCCTTAGAACTGTTGT 57.367 45.000 0.00 0.00 34.15 3.32
3366 3898 2.632987 ACGGCCTTAGAACTGTTGTT 57.367 45.000 0.00 0.00 39.42 2.83
3367 3899 3.756933 ACGGCCTTAGAACTGTTGTTA 57.243 42.857 0.00 0.00 36.39 2.41
3368 3900 3.396560 ACGGCCTTAGAACTGTTGTTAC 58.603 45.455 0.00 0.00 36.39 2.50
3369 3901 2.740447 CGGCCTTAGAACTGTTGTTACC 59.260 50.000 0.00 0.00 36.39 2.85
3370 3902 3.746940 GGCCTTAGAACTGTTGTTACCA 58.253 45.455 0.00 0.00 36.39 3.25
3371 3903 3.501062 GGCCTTAGAACTGTTGTTACCAC 59.499 47.826 0.00 0.00 36.39 4.16
3400 3932 5.920273 CACCACCTTTAAGTTGTAAGCAATG 59.080 40.000 0.00 0.00 36.92 2.82
3490 4022 5.126061 GGTTGCACAAGATGTTCCAAGATAT 59.874 40.000 0.00 0.00 0.00 1.63
3591 4123 8.616076 CCAAGAGGTTTGCTTATATCACTAAAG 58.384 37.037 0.00 0.00 0.00 1.85
3624 4156 7.581464 GCCCTTATTGATATCATACCTGCAGTA 60.581 40.741 13.81 5.74 34.76 2.74
3643 4175 2.732001 ACTTGTCTTTCGTCGTTTGC 57.268 45.000 0.00 0.00 0.00 3.68
3654 4186 2.659757 TCGTCGTTTGCTACTTGAATCG 59.340 45.455 0.00 0.00 0.00 3.34
3658 4190 4.150098 GTCGTTTGCTACTTGAATCGAAGT 59.850 41.667 0.00 0.00 39.54 3.01
3672 4204 8.515695 TTGAATCGAAGTGAGTACCTAGAATA 57.484 34.615 0.00 0.00 0.00 1.75
3673 4205 8.155821 TGAATCGAAGTGAGTACCTAGAATAG 57.844 38.462 0.00 0.00 38.80 1.73
3674 4206 7.774157 TGAATCGAAGTGAGTACCTAGAATAGT 59.226 37.037 0.00 0.00 36.82 2.12
3675 4207 9.270640 GAATCGAAGTGAGTACCTAGAATAGTA 57.729 37.037 0.00 0.00 36.82 1.82
3676 4208 8.606040 ATCGAAGTGAGTACCTAGAATAGTAC 57.394 38.462 0.00 0.00 36.82 2.73
3677 4209 6.699204 TCGAAGTGAGTACCTAGAATAGTACG 59.301 42.308 0.00 0.00 36.82 3.67
3678 4210 6.563753 CGAAGTGAGTACCTAGAATAGTACGC 60.564 46.154 0.00 0.00 36.82 4.42
3679 4211 5.062528 AGTGAGTACCTAGAATAGTACGCC 58.937 45.833 7.79 3.50 36.82 5.68
3680 4212 4.215185 GTGAGTACCTAGAATAGTACGCCC 59.785 50.000 7.79 0.00 36.82 6.13
3682 4214 4.650734 AGTACCTAGAATAGTACGCCCTC 58.349 47.826 0.00 0.00 36.82 4.30
3683 4215 2.874014 ACCTAGAATAGTACGCCCTCC 58.126 52.381 0.00 0.00 36.82 4.30
3684 4216 1.811359 CCTAGAATAGTACGCCCTCCG 59.189 57.143 0.00 0.00 36.82 4.63
3693 4225 4.141144 CGCCCTCCGTTGCATAAT 57.859 55.556 0.00 0.00 0.00 1.28
3694 4226 2.404083 CGCCCTCCGTTGCATAATT 58.596 52.632 0.00 0.00 0.00 1.40
3695 4227 0.029300 CGCCCTCCGTTGCATAATTG 59.971 55.000 0.00 0.00 0.00 2.32
3696 4228 1.388547 GCCCTCCGTTGCATAATTGA 58.611 50.000 0.00 0.00 0.00 2.57
3697 4229 1.334869 GCCCTCCGTTGCATAATTGAG 59.665 52.381 0.00 0.00 0.00 3.02
3698 4230 2.643551 CCCTCCGTTGCATAATTGAGT 58.356 47.619 0.00 0.00 0.00 3.41
3699 4231 2.355756 CCCTCCGTTGCATAATTGAGTG 59.644 50.000 0.00 0.00 0.00 3.51
3700 4232 2.223340 CCTCCGTTGCATAATTGAGTGC 60.223 50.000 0.00 5.62 41.61 4.40
3701 4233 1.396648 TCCGTTGCATAATTGAGTGCG 59.603 47.619 0.00 0.00 44.11 5.34
3702 4234 1.130373 CCGTTGCATAATTGAGTGCGT 59.870 47.619 0.00 0.00 44.11 5.24
3703 4235 2.350192 CCGTTGCATAATTGAGTGCGTA 59.650 45.455 0.00 0.00 44.11 4.42
3704 4236 3.002246 CCGTTGCATAATTGAGTGCGTAT 59.998 43.478 0.00 0.00 44.11 3.06
3705 4237 4.210328 CCGTTGCATAATTGAGTGCGTATA 59.790 41.667 0.00 0.00 44.11 1.47
3706 4238 5.107104 CCGTTGCATAATTGAGTGCGTATAT 60.107 40.000 0.00 0.00 44.11 0.86
3707 4239 6.090223 CCGTTGCATAATTGAGTGCGTATATA 59.910 38.462 0.00 0.00 44.11 0.86
3708 4240 7.201522 CCGTTGCATAATTGAGTGCGTATATAT 60.202 37.037 0.00 0.00 44.11 0.86
3709 4241 8.168626 CGTTGCATAATTGAGTGCGTATATATT 58.831 33.333 0.00 0.00 44.11 1.28
3710 4242 9.825972 GTTGCATAATTGAGTGCGTATATATTT 57.174 29.630 0.00 0.00 44.11 1.40
3737 4269 6.480524 AAAAAGTCTTTGCAAACTTTGACC 57.519 33.333 23.33 9.18 43.14 4.02
3738 4270 4.799564 AAGTCTTTGCAAACTTTGACCA 57.200 36.364 19.85 0.00 31.81 4.02
3739 4271 4.799564 AGTCTTTGCAAACTTTGACCAA 57.200 36.364 19.85 0.00 0.00 3.67
3740 4272 4.747810 AGTCTTTGCAAACTTTGACCAAG 58.252 39.130 19.85 3.93 38.64 3.61
3839 4371 9.970553 ATGATATATGTTTGGCATTCTAGATGT 57.029 29.630 0.00 0.00 38.94 3.06
3845 4377 7.701539 TGTTTGGCATTCTAGATGTAAATGT 57.298 32.000 0.00 0.00 33.82 2.71
3846 4378 8.121305 TGTTTGGCATTCTAGATGTAAATGTT 57.879 30.769 0.00 0.00 33.82 2.71
3847 4379 8.584157 TGTTTGGCATTCTAGATGTAAATGTTT 58.416 29.630 0.00 0.00 33.82 2.83
3848 4380 9.423061 GTTTGGCATTCTAGATGTAAATGTTTT 57.577 29.630 0.00 0.00 33.82 2.43
3849 4381 9.995003 TTTGGCATTCTAGATGTAAATGTTTTT 57.005 25.926 0.00 0.00 33.82 1.94
3850 4382 9.638239 TTGGCATTCTAGATGTAAATGTTTTTC 57.362 29.630 0.00 0.00 33.82 2.29
3851 4383 9.023962 TGGCATTCTAGATGTAAATGTTTTTCT 57.976 29.630 0.00 0.00 33.82 2.52
3852 4384 9.508567 GGCATTCTAGATGTAAATGTTTTTCTC 57.491 33.333 0.00 0.00 33.82 2.87
3853 4385 9.508567 GCATTCTAGATGTAAATGTTTTTCTCC 57.491 33.333 0.00 0.00 33.82 3.71
3856 4388 9.567776 TTCTAGATGTAAATGTTTTTCTCCACA 57.432 29.630 0.00 0.00 0.00 4.17
3857 4389 9.567776 TCTAGATGTAAATGTTTTTCTCCACAA 57.432 29.630 0.00 0.00 0.00 3.33
3859 4391 8.871686 AGATGTAAATGTTTTTCTCCACAAAC 57.128 30.769 0.00 0.00 34.09 2.93
3860 4392 8.695456 AGATGTAAATGTTTTTCTCCACAAACT 58.305 29.630 0.00 0.00 34.52 2.66
3861 4393 9.313118 GATGTAAATGTTTTTCTCCACAAACTT 57.687 29.630 0.00 0.00 34.52 2.66
3862 4394 8.472683 TGTAAATGTTTTTCTCCACAAACTTG 57.527 30.769 0.00 0.00 34.52 3.16
3863 4395 6.983474 AAATGTTTTTCTCCACAAACTTGG 57.017 33.333 0.00 0.00 38.10 3.61
3864 4396 5.675684 ATGTTTTTCTCCACAAACTTGGT 57.324 34.783 0.00 0.00 37.93 3.67
3865 4397 5.066968 TGTTTTTCTCCACAAACTTGGTC 57.933 39.130 0.00 0.00 37.93 4.02
3866 4398 4.524714 TGTTTTTCTCCACAAACTTGGTCA 59.475 37.500 0.00 0.00 37.93 4.02
3867 4399 5.011125 TGTTTTTCTCCACAAACTTGGTCAA 59.989 36.000 0.00 0.00 37.93 3.18
3868 4400 5.730296 TTTTCTCCACAAACTTGGTCAAA 57.270 34.783 0.00 0.00 37.93 2.69
3869 4401 4.981806 TTCTCCACAAACTTGGTCAAAG 57.018 40.909 0.00 0.00 42.07 2.77
3880 4412 4.376340 CTTGGTCAAAGTTTGTGAGCTT 57.624 40.909 15.08 0.00 42.63 3.74
3881 4413 4.747810 CTTGGTCAAAGTTTGTGAGCTTT 58.252 39.130 15.08 0.00 42.63 3.51
3889 4421 6.951256 AAAGTTTGTGAGCTTTGACTTTTC 57.049 33.333 0.00 0.00 35.36 2.29
3890 4422 5.643379 AGTTTGTGAGCTTTGACTTTTCA 57.357 34.783 0.00 0.00 0.00 2.69
3891 4423 6.024552 AGTTTGTGAGCTTTGACTTTTCAA 57.975 33.333 0.00 0.00 40.14 2.69
3962 4494 8.592809 ACTTCTCATCTCCCATTTACTGATATC 58.407 37.037 0.00 0.00 0.00 1.63
3971 4503 5.408604 CCCATTTACTGATATCGGTAAGTGC 59.591 44.000 33.71 0.97 45.86 4.40
4019 4554 6.203915 TGCGAATTCACAGTAAACTACAATGT 59.796 34.615 6.22 0.00 0.00 2.71
4034 4569 4.028993 ACAATGTGTTAACGGGAGGATT 57.971 40.909 0.26 0.00 0.00 3.01
4066 4604 4.577693 ACATGCATCAGCTGATAATTTCGT 59.422 37.500 28.27 16.99 42.74 3.85
4076 4614 8.397906 TCAGCTGATAATTTCGTCCATTAAAAG 58.602 33.333 13.74 0.00 0.00 2.27
4077 4615 8.184192 CAGCTGATAATTTCGTCCATTAAAAGT 58.816 33.333 8.42 0.00 0.00 2.66
4078 4616 8.739972 AGCTGATAATTTCGTCCATTAAAAGTT 58.260 29.630 0.00 0.00 0.00 2.66
4079 4617 9.353999 GCTGATAATTTCGTCCATTAAAAGTTT 57.646 29.630 0.00 0.00 0.00 2.66
4111 4649 7.057264 AGTCATAGATTCTGCTAGTAGTCACA 58.943 38.462 7.77 0.00 0.00 3.58
4166 4704 9.862371 ACTAGTATGTCTGTTCTTGAATACTTG 57.138 33.333 0.00 0.00 33.90 3.16
4170 4708 5.316167 TGTCTGTTCTTGAATACTTGGCAT 58.684 37.500 0.00 0.00 0.00 4.40
4178 4716 9.221775 GTTCTTGAATACTTGGCATTATTTACG 57.778 33.333 0.00 0.00 0.00 3.18
4181 4719 8.725405 TTGAATACTTGGCATTATTTACGAGA 57.275 30.769 0.00 0.00 0.00 4.04
4276 4816 0.535335 AATGAGGCAATGCAAGCAGG 59.465 50.000 7.79 0.00 0.00 4.85
4306 4848 7.005296 CCTGAGTAGTGGTATAGGTCATTAGT 58.995 42.308 0.00 0.00 0.00 2.24
4342 4884 3.570550 AGGAAGCGGAGACTATCATGTAC 59.429 47.826 0.00 0.00 0.00 2.90
4343 4885 3.570550 GGAAGCGGAGACTATCATGTACT 59.429 47.826 0.00 0.00 0.00 2.73
4344 4886 4.320641 GGAAGCGGAGACTATCATGTACTC 60.321 50.000 0.00 0.00 0.00 2.59
4345 4887 3.150767 AGCGGAGACTATCATGTACTCC 58.849 50.000 0.00 0.00 42.30 3.85
4346 4888 2.229302 GCGGAGACTATCATGTACTCCC 59.771 54.545 0.00 0.00 42.63 4.30
4347 4889 3.757270 CGGAGACTATCATGTACTCCCT 58.243 50.000 0.00 0.66 42.63 4.20
4348 4890 3.754323 CGGAGACTATCATGTACTCCCTC 59.246 52.174 0.00 7.53 42.63 4.30
4349 4891 4.083565 GGAGACTATCATGTACTCCCTCC 58.916 52.174 0.00 0.00 40.58 4.30
4350 4892 4.447908 GGAGACTATCATGTACTCCCTCCA 60.448 50.000 0.00 0.00 40.58 3.86
4351 4893 5.329399 GAGACTATCATGTACTCCCTCCAT 58.671 45.833 0.00 0.00 0.00 3.41
4352 4894 5.721225 AGACTATCATGTACTCCCTCCATT 58.279 41.667 0.00 0.00 0.00 3.16
4353 4895 6.146760 AGACTATCATGTACTCCCTCCATTT 58.853 40.000 0.00 0.00 0.00 2.32
4354 4896 6.268847 AGACTATCATGTACTCCCTCCATTTC 59.731 42.308 0.00 0.00 0.00 2.17
4355 4897 6.146760 ACTATCATGTACTCCCTCCATTTCT 58.853 40.000 0.00 0.00 0.00 2.52
4356 4898 7.306013 ACTATCATGTACTCCCTCCATTTCTA 58.694 38.462 0.00 0.00 0.00 2.10
4357 4899 7.789831 ACTATCATGTACTCCCTCCATTTCTAA 59.210 37.037 0.00 0.00 0.00 2.10
4358 4900 6.884472 TCATGTACTCCCTCCATTTCTAAA 57.116 37.500 0.00 0.00 0.00 1.85
4359 4901 7.451731 TCATGTACTCCCTCCATTTCTAAAT 57.548 36.000 0.00 0.00 0.00 1.40
4360 4902 8.561536 TCATGTACTCCCTCCATTTCTAAATA 57.438 34.615 0.00 0.00 0.00 1.40
4361 4903 9.170890 TCATGTACTCCCTCCATTTCTAAATAT 57.829 33.333 0.00 0.00 0.00 1.28
4365 4907 9.438228 GTACTCCCTCCATTTCTAAATATAAGC 57.562 37.037 0.00 0.00 0.00 3.09
4366 4908 7.462590 ACTCCCTCCATTTCTAAATATAAGCC 58.537 38.462 0.00 0.00 0.00 4.35
4367 4909 7.295911 ACTCCCTCCATTTCTAAATATAAGCCT 59.704 37.037 0.00 0.00 0.00 4.58
4368 4910 7.461749 TCCCTCCATTTCTAAATATAAGCCTG 58.538 38.462 0.00 0.00 0.00 4.85
4369 4911 7.073725 TCCCTCCATTTCTAAATATAAGCCTGT 59.926 37.037 0.00 0.00 0.00 4.00
4370 4912 7.391833 CCCTCCATTTCTAAATATAAGCCTGTC 59.608 40.741 0.00 0.00 0.00 3.51
4371 4913 8.160106 CCTCCATTTCTAAATATAAGCCTGTCT 58.840 37.037 0.00 0.00 0.00 3.41
4386 4928 6.798427 AGCCTGTCTAGAGATTTCAATACA 57.202 37.500 0.00 0.00 0.00 2.29
4387 4929 6.815089 AGCCTGTCTAGAGATTTCAATACAG 58.185 40.000 0.00 0.00 32.56 2.74
4388 4930 6.609212 AGCCTGTCTAGAGATTTCAATACAGA 59.391 38.462 11.20 0.00 33.62 3.41
4389 4931 6.699642 GCCTGTCTAGAGATTTCAATACAGAC 59.300 42.308 11.20 0.00 33.62 3.51
4390 4932 7.417342 GCCTGTCTAGAGATTTCAATACAGACT 60.417 40.741 11.20 0.00 33.62 3.24
4391 4933 9.126151 CCTGTCTAGAGATTTCAATACAGACTA 57.874 37.037 11.20 0.00 33.62 2.59
4392 4934 9.944663 CTGTCTAGAGATTTCAATACAGACTAC 57.055 37.037 0.00 0.00 33.62 2.73
4393 4935 9.462606 TGTCTAGAGATTTCAATACAGACTACA 57.537 33.333 0.00 0.00 33.86 2.74
4398 4940 8.353684 AGAGATTTCAATACAGACTACATACGG 58.646 37.037 0.00 0.00 0.00 4.02
4399 4941 8.234136 AGATTTCAATACAGACTACATACGGA 57.766 34.615 0.00 0.00 0.00 4.69
4400 4942 8.861086 AGATTTCAATACAGACTACATACGGAT 58.139 33.333 0.00 0.00 0.00 4.18
4401 4943 8.818141 ATTTCAATACAGACTACATACGGATG 57.182 34.615 5.94 5.94 39.16 3.51
4403 4945 8.454570 TTCAATACAGACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
4404 4946 8.631480 TCAATACAGACTACATACGGATGTAT 57.369 34.615 20.64 11.04 45.42 2.29
4405 4947 9.729281 TCAATACAGACTACATACGGATGTATA 57.271 33.333 20.64 10.32 45.42 1.47
4441 4983 4.992381 AGTGTAGATTCACTCGTTTTGC 57.008 40.909 0.00 0.00 44.07 3.68
4442 4984 4.632153 AGTGTAGATTCACTCGTTTTGCT 58.368 39.130 0.00 0.00 44.07 3.91
4443 4985 4.686554 AGTGTAGATTCACTCGTTTTGCTC 59.313 41.667 0.00 0.00 44.07 4.26
4444 4986 3.994392 TGTAGATTCACTCGTTTTGCTCC 59.006 43.478 0.00 0.00 0.00 4.70
4445 4987 2.069273 AGATTCACTCGTTTTGCTCCG 58.931 47.619 0.00 0.00 0.00 4.63
4446 4988 1.798813 GATTCACTCGTTTTGCTCCGT 59.201 47.619 0.00 0.00 0.00 4.69
4447 4989 2.512485 TTCACTCGTTTTGCTCCGTA 57.488 45.000 0.00 0.00 0.00 4.02
4448 4990 2.736144 TCACTCGTTTTGCTCCGTAT 57.264 45.000 0.00 0.00 0.00 3.06
4449 4991 2.333926 TCACTCGTTTTGCTCCGTATG 58.666 47.619 0.00 0.00 0.00 2.39
4450 4992 2.066262 CACTCGTTTTGCTCCGTATGT 58.934 47.619 0.00 0.00 0.00 2.29
4451 4993 3.057386 TCACTCGTTTTGCTCCGTATGTA 60.057 43.478 0.00 0.00 0.00 2.29
4452 4994 3.303495 CACTCGTTTTGCTCCGTATGTAG 59.697 47.826 0.00 0.00 0.00 2.74
4453 4995 3.057033 ACTCGTTTTGCTCCGTATGTAGT 60.057 43.478 0.00 0.00 0.00 2.73
4454 4996 3.504863 TCGTTTTGCTCCGTATGTAGTC 58.495 45.455 0.00 0.00 0.00 2.59
4455 4997 3.192001 TCGTTTTGCTCCGTATGTAGTCT 59.808 43.478 0.00 0.00 0.00 3.24
4456 4998 3.303495 CGTTTTGCTCCGTATGTAGTCTG 59.697 47.826 0.00 0.00 0.00 3.51
4457 4999 4.243270 GTTTTGCTCCGTATGTAGTCTGT 58.757 43.478 0.00 0.00 0.00 3.41
4458 5000 5.404946 GTTTTGCTCCGTATGTAGTCTGTA 58.595 41.667 0.00 0.00 0.00 2.74
4459 5001 5.847111 TTTGCTCCGTATGTAGTCTGTAT 57.153 39.130 0.00 0.00 0.00 2.29
4460 5002 5.847111 TTGCTCCGTATGTAGTCTGTATT 57.153 39.130 0.00 0.00 0.00 1.89
4461 5003 5.183014 TGCTCCGTATGTAGTCTGTATTG 57.817 43.478 0.00 0.00 0.00 1.90
4462 5004 4.037565 TGCTCCGTATGTAGTCTGTATTGG 59.962 45.833 0.00 0.00 0.00 3.16
4463 5005 4.277672 GCTCCGTATGTAGTCTGTATTGGA 59.722 45.833 0.00 0.00 0.00 3.53
4464 5006 5.221185 GCTCCGTATGTAGTCTGTATTGGAA 60.221 44.000 0.00 0.00 0.00 3.53
4465 5007 6.516860 GCTCCGTATGTAGTCTGTATTGGAAT 60.517 42.308 0.00 0.00 0.00 3.01
4466 5008 7.356089 TCCGTATGTAGTCTGTATTGGAATT 57.644 36.000 0.00 0.00 0.00 2.17
4467 5009 7.788026 TCCGTATGTAGTCTGTATTGGAATTT 58.212 34.615 0.00 0.00 0.00 1.82
4468 5010 7.924412 TCCGTATGTAGTCTGTATTGGAATTTC 59.076 37.037 0.00 0.00 0.00 2.17
4469 5011 7.926555 CCGTATGTAGTCTGTATTGGAATTTCT 59.073 37.037 0.00 0.00 0.00 2.52
4470 5012 9.961265 CGTATGTAGTCTGTATTGGAATTTCTA 57.039 33.333 0.00 0.00 0.00 2.10
4477 5019 8.523658 AGTCTGTATTGGAATTTCTAAAAAGGC 58.476 33.333 0.00 0.43 0.00 4.35
4478 5020 8.523658 GTCTGTATTGGAATTTCTAAAAAGGCT 58.476 33.333 0.00 0.00 0.00 4.58
4479 5021 9.088987 TCTGTATTGGAATTTCTAAAAAGGCTT 57.911 29.630 0.00 0.00 0.00 4.35
4493 5035 9.333724 TCTAAAAAGGCTTATATTTAGGAACGG 57.666 33.333 21.19 4.97 36.48 4.44
4494 5036 9.333724 CTAAAAAGGCTTATATTTAGGAACGGA 57.666 33.333 16.77 0.00 33.69 4.69
4495 5037 7.803279 AAAAGGCTTATATTTAGGAACGGAG 57.197 36.000 0.00 0.00 0.00 4.63
4496 5038 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
4497 5039 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
4498 5040 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
4562 5104 6.404734 GCATTCATAAACAAAGGGTGTAGGAG 60.405 42.308 0.00 0.00 40.60 3.69
4570 5112 7.520451 AACAAAGGGTGTAGGAGTTATTTTC 57.480 36.000 0.00 0.00 40.60 2.29
4588 5130 9.999009 GTTATTTTCTAAACTACCACCATAAGC 57.001 33.333 0.00 0.00 0.00 3.09
4601 5143 2.009051 CCATAAGCGCATGAACTGTCA 58.991 47.619 11.47 0.00 38.41 3.58
4642 5184 1.952621 TAAGGACTCCTGGAGGGTTG 58.047 55.000 26.56 3.45 32.13 3.77
4726 5268 9.481340 TCTCATAAGATTGTTATGGATTCTTCG 57.519 33.333 12.20 0.00 34.16 3.79
4734 5276 8.964476 ATTGTTATGGATTCTTCGTAACATCT 57.036 30.769 8.94 0.39 35.44 2.90
4811 5354 3.326747 CCAGAGTAACTTTGAAGACCGG 58.673 50.000 0.00 0.00 0.00 5.28
4817 5360 2.358247 TTTGAAGACCGGCTCGCC 60.358 61.111 0.00 0.00 0.00 5.54
4884 5432 7.042051 GCATAGTATTCTTTCTTCCGTGCATTA 60.042 37.037 0.00 0.00 0.00 1.90
4885 5433 6.663944 AGTATTCTTTCTTCCGTGCATTAC 57.336 37.500 0.00 0.00 0.00 1.89
4906 5455 8.786898 CATTACACCATTCCATAATAACAGGAG 58.213 37.037 0.00 0.00 32.11 3.69
5078 5627 3.117491 TGAGCTGCAGGATAGTATTGC 57.883 47.619 17.12 0.00 38.30 3.56
5085 5634 3.142174 GCAGGATAGTATTGCTGGGAAC 58.858 50.000 0.38 0.00 35.77 3.62
5143 5692 5.805728 AGATACGCCAAATCCCTATTAAGG 58.194 41.667 0.00 0.00 43.25 2.69
5168 5738 2.426842 CCTTTCCAGGAAGGTGGATC 57.573 55.000 10.34 0.00 46.31 3.36
5169 5739 1.635487 CCTTTCCAGGAAGGTGGATCA 59.365 52.381 10.34 0.00 46.31 2.92
5170 5740 2.619074 CCTTTCCAGGAAGGTGGATCAC 60.619 54.545 10.34 0.00 46.31 3.06
5220 5790 4.142665 CCTCATGAATGTGACTGCTTTCAG 60.143 45.833 0.00 0.00 45.71 3.02
5228 5798 1.908619 TGACTGCTTTCAGGGATGCTA 59.091 47.619 0.00 0.00 44.54 3.49
5232 5802 1.630369 TGCTTTCAGGGATGCTACTGT 59.370 47.619 0.00 0.00 36.17 3.55
5398 5969 1.630369 TCTATTTGCAGACAGCCCACT 59.370 47.619 0.00 0.00 44.83 4.00
5402 5973 1.993701 TTGCAGACAGCCCACTCCAA 61.994 55.000 0.00 0.00 44.83 3.53
5449 6020 3.841643 TCGTTGTTCTTCTATTCCCGAC 58.158 45.455 0.00 0.00 0.00 4.79
5481 6052 1.474478 CCATACAGACAGCGAGTGACT 59.526 52.381 0.00 0.00 0.00 3.41
5517 6088 3.081804 CCAGATGAAACCTGGGTTGTAC 58.918 50.000 0.00 2.48 45.66 2.90
5552 6123 2.767505 GCACCGATTATAGGGAGGTTG 58.232 52.381 0.00 0.00 32.04 3.77
5554 6125 3.728845 CACCGATTATAGGGAGGTTGTG 58.271 50.000 0.00 0.00 32.04 3.33
5573 6150 8.917088 AGGTTGTGTGTAGTACTAGTTTTCTTA 58.083 33.333 1.87 0.00 0.00 2.10
5691 6286 8.339344 TGTAAGATCCGGATGACGTTATATTA 57.661 34.615 24.82 0.52 42.24 0.98
5698 6293 8.063200 TCCGGATGACGTTATATTATTGAGAT 57.937 34.615 0.00 0.00 42.24 2.75
5699 6294 7.973944 TCCGGATGACGTTATATTATTGAGATG 59.026 37.037 0.00 0.00 42.24 2.90
5728 6323 6.591834 AGTCACTATTTTGTATCTGCTGTGAC 59.408 38.462 12.63 12.63 46.72 3.67
5751 6346 2.811317 GAGTCGGCCTTCTGCACG 60.811 66.667 0.00 0.00 43.89 5.34
5752 6347 3.575351 GAGTCGGCCTTCTGCACGT 62.575 63.158 0.00 0.00 43.89 4.49
5767 6362 3.917870 CGTGAGTCGTTCGTGCTT 58.082 55.556 0.00 0.00 34.52 3.91
5914 6509 3.152261 AGAAATACGTCTGAAGGCTCG 57.848 47.619 0.00 0.00 0.00 5.03
5918 6513 1.654954 TACGTCTGAAGGCTCGGAGC 61.655 60.000 21.57 21.57 37.65 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.397941 TTGGTGTCAAGCTCAGAGGG 59.602 55.000 0.00 0.00 0.00 4.30
127 128 2.879233 GCTCGGGTGTGGAGGTGAA 61.879 63.158 0.00 0.00 32.10 3.18
313 317 0.177141 GTTCGTGGCAGGCAGGTATA 59.823 55.000 15.60 1.51 0.00 1.47
376 380 1.558294 AGGAGCAGATGCAGATTGTGA 59.442 47.619 7.68 0.00 45.16 3.58
425 429 3.342627 CGACGGCGTTTGCTCCAA 61.343 61.111 16.19 0.00 42.25 3.53
456 460 0.468226 GTGGTGAACCTGTGTCCTCA 59.532 55.000 0.37 0.00 36.82 3.86
469 473 2.434185 GCGGCATCTTCGTGGTGA 60.434 61.111 0.00 0.00 0.00 4.02
497 504 8.868522 AAATCAGATTGTTCAAGTAAGGATGA 57.131 30.769 0.00 0.00 0.00 2.92
519 526 4.724399 GTTTTTGGGGTGGATTTGGAAAT 58.276 39.130 0.00 0.00 0.00 2.17
544 551 0.316204 TCCTTTCCCAACGAGACGAC 59.684 55.000 0.00 0.00 0.00 4.34
624 632 7.833285 AGGCATTAGTTTCTTAGGTTTTTGA 57.167 32.000 0.00 0.00 0.00 2.69
667 676 3.335729 AGGGGGATCGCCGGTTTT 61.336 61.111 21.47 3.08 41.60 2.43
769 792 6.500589 TCCAGGAGAAGAAAGAAGAAAGAA 57.499 37.500 0.00 0.00 0.00 2.52
770 793 6.500589 TTCCAGGAGAAGAAAGAAGAAAGA 57.499 37.500 0.00 0.00 0.00 2.52
811 835 3.181461 CCCGATACAGAGAAAATCCAGCT 60.181 47.826 0.00 0.00 0.00 4.24
812 836 3.134458 CCCGATACAGAGAAAATCCAGC 58.866 50.000 0.00 0.00 0.00 4.85
813 837 3.134458 GCCCGATACAGAGAAAATCCAG 58.866 50.000 0.00 0.00 0.00 3.86
814 838 2.503765 TGCCCGATACAGAGAAAATCCA 59.496 45.455 0.00 0.00 0.00 3.41
815 839 2.872858 GTGCCCGATACAGAGAAAATCC 59.127 50.000 0.00 0.00 0.00 3.01
816 840 2.540101 CGTGCCCGATACAGAGAAAATC 59.460 50.000 0.00 0.00 35.63 2.17
817 841 2.550978 CGTGCCCGATACAGAGAAAAT 58.449 47.619 0.00 0.00 35.63 1.82
818 842 1.404986 CCGTGCCCGATACAGAGAAAA 60.405 52.381 0.00 0.00 35.63 2.29
819 843 0.174845 CCGTGCCCGATACAGAGAAA 59.825 55.000 0.00 0.00 35.63 2.52
820 844 1.672854 CCCGTGCCCGATACAGAGAA 61.673 60.000 0.00 0.00 35.63 2.87
821 845 2.125326 CCCGTGCCCGATACAGAGA 61.125 63.158 0.00 0.00 35.63 3.10
822 846 2.125326 TCCCGTGCCCGATACAGAG 61.125 63.158 0.00 0.00 35.63 3.35
823 847 2.043752 TCCCGTGCCCGATACAGA 60.044 61.111 0.00 0.00 35.63 3.41
824 848 2.106332 GTCCCGTGCCCGATACAG 59.894 66.667 0.00 0.00 35.63 2.74
825 849 2.363276 AGTCCCGTGCCCGATACA 60.363 61.111 0.00 0.00 35.63 2.29
826 850 2.106332 CAGTCCCGTGCCCGATAC 59.894 66.667 0.00 0.00 35.63 2.24
827 851 3.845259 GCAGTCCCGTGCCCGATA 61.845 66.667 0.00 0.00 37.49 2.92
833 857 4.735132 TACGCAGCAGTCCCGTGC 62.735 66.667 0.00 0.00 44.35 5.34
834 858 2.167219 CATACGCAGCAGTCCCGTG 61.167 63.158 0.00 0.00 36.51 4.94
835 859 2.184322 CATACGCAGCAGTCCCGT 59.816 61.111 0.00 0.00 38.84 5.28
845 869 2.100031 CGCTGCCAAGACATACGCA 61.100 57.895 0.00 0.00 0.00 5.24
963 987 0.392998 GGTGGACCGCTGTGAATGAT 60.393 55.000 4.75 0.00 0.00 2.45
1044 1071 3.148279 GCGATGAGGAGACGGGGT 61.148 66.667 0.00 0.00 0.00 4.95
1099 1126 9.005777 AGATTAGTTAGGATACGATGAGAAGAC 57.994 37.037 0.00 0.00 46.39 3.01
1142 1170 1.450531 GGAAGCAATCCCGCATGAGG 61.451 60.000 8.78 8.78 43.00 3.86
1158 1186 2.036098 CACCTGCAGGCATGGGAA 59.964 61.111 33.06 0.00 39.32 3.97
1207 1243 2.044946 GCGGGGTGGATGAAGCTT 60.045 61.111 0.00 0.00 0.00 3.74
1343 1387 3.170672 TCATCCAGCCATCCCCGG 61.171 66.667 0.00 0.00 0.00 5.73
1356 1400 6.202937 CACTACGAGTATCCAGAAACTCATC 58.797 44.000 0.00 0.00 41.83 2.92
1357 1401 5.067936 CCACTACGAGTATCCAGAAACTCAT 59.932 44.000 0.00 0.00 41.83 2.90
1521 1566 4.034163 CAGACAGCAGCATATTTCACAGAG 59.966 45.833 0.00 0.00 0.00 3.35
1540 1586 0.908198 ACAGCCTGAAGATCCCAGAC 59.092 55.000 12.75 3.22 33.65 3.51
1565 1611 1.858091 ATGCCGAACTAGAGAATGCG 58.142 50.000 0.00 0.00 0.00 4.73
1642 1688 1.897423 GGTGCAAAATGGGCCTACC 59.103 57.895 4.53 0.00 40.81 3.18
1643 1689 1.248101 ACGGTGCAAAATGGGCCTAC 61.248 55.000 4.53 0.00 0.00 3.18
1682 1728 5.793817 TGTATGTAACTGACAAGCATCACT 58.206 37.500 0.00 0.00 42.78 3.41
1720 1766 0.681564 CTCCTAGCTCGGTGTGTCCT 60.682 60.000 3.89 0.00 0.00 3.85
1766 1812 6.216456 AGGAACAGAAAATAGGGAGAGATGTT 59.784 38.462 0.00 0.00 0.00 2.71
1791 1837 5.013079 TGGATTACCAAAAGAGAGAAGAGCA 59.987 40.000 0.00 0.00 43.91 4.26
1813 1859 3.444742 TCAGACAATGCAAGCCTTTATGG 59.555 43.478 0.00 0.00 39.35 2.74
1848 1894 9.706691 GTGTCTATTGCTAGCTTAATACCAATA 57.293 33.333 17.23 7.84 0.00 1.90
1854 1900 7.506328 TCTCGTGTCTATTGCTAGCTTAATA 57.494 36.000 17.23 11.30 0.00 0.98
1860 1906 4.673441 TCTTTCTCGTGTCTATTGCTAGC 58.327 43.478 8.10 8.10 0.00 3.42
1865 1911 5.230942 ACAGGTTCTTTCTCGTGTCTATTG 58.769 41.667 0.00 0.00 0.00 1.90
1980 2338 2.173569 ACATGGGCTATCCTGGAACTTC 59.826 50.000 0.00 0.00 36.20 3.01
2230 2596 3.686241 GCTGATCAAACACTGCACTATGA 59.314 43.478 0.00 0.00 0.00 2.15
2545 2911 2.163211 GGGAGAAATGAGCTCAGCAAAC 59.837 50.000 22.96 12.59 34.07 2.93
2767 3133 9.853555 TGAAACAATAAAATCTTAACGATGCAT 57.146 25.926 0.00 0.00 31.20 3.96
3049 3417 2.486951 TAGCTCGCATACCTCGTTTC 57.513 50.000 0.00 0.00 0.00 2.78
3100 3468 3.119708 GCCTAGAAAAGCAACATCAGGTG 60.120 47.826 0.00 0.00 0.00 4.00
3284 3816 5.400485 GTGCATCGATTCCAATTAAGCAATC 59.600 40.000 0.00 0.00 0.00 2.67
3365 3897 5.132480 ACTTAAAGGTGGTGGTAAGTGGTAA 59.868 40.000 0.00 0.00 35.88 2.85
3366 3898 4.659835 ACTTAAAGGTGGTGGTAAGTGGTA 59.340 41.667 0.00 0.00 35.88 3.25
3367 3899 3.460712 ACTTAAAGGTGGTGGTAAGTGGT 59.539 43.478 0.00 0.00 35.88 4.16
3368 3900 4.094830 ACTTAAAGGTGGTGGTAAGTGG 57.905 45.455 0.00 0.00 35.88 4.00
3369 3901 4.885325 ACAACTTAAAGGTGGTGGTAAGTG 59.115 41.667 0.00 0.00 37.20 3.16
3370 3902 5.120054 ACAACTTAAAGGTGGTGGTAAGT 57.880 39.130 0.00 0.00 37.20 2.24
3371 3903 6.293790 GCTTACAACTTAAAGGTGGTGGTAAG 60.294 42.308 11.89 11.89 44.18 2.34
3490 4022 3.028130 TCTATCACCTGCAACCATCGTA 58.972 45.455 0.00 0.00 0.00 3.43
3584 4116 8.738645 ATCAATAAGGGCTCTAAACTTTAGTG 57.261 34.615 8.16 7.20 0.00 2.74
3591 4123 9.384764 GGTATGATATCAATAAGGGCTCTAAAC 57.615 37.037 9.99 0.00 0.00 2.01
3624 4156 2.277084 AGCAAACGACGAAAGACAAGT 58.723 42.857 0.00 0.00 0.00 3.16
3643 4175 6.197364 AGGTACTCACTTCGATTCAAGTAG 57.803 41.667 0.00 0.00 34.70 2.57
3654 4186 6.293353 GGCGTACTATTCTAGGTACTCACTTC 60.293 46.154 0.00 0.00 41.75 3.01
3658 4190 4.103785 AGGGCGTACTATTCTAGGTACTCA 59.896 45.833 0.00 0.00 41.75 3.41
3672 4204 1.324740 TATGCAACGGAGGGCGTACT 61.325 55.000 0.00 0.00 34.69 2.73
3673 4205 0.460635 TTATGCAACGGAGGGCGTAC 60.461 55.000 0.00 0.00 34.20 3.67
3674 4206 0.466543 ATTATGCAACGGAGGGCGTA 59.533 50.000 0.00 0.00 34.69 4.42
3675 4207 0.393808 AATTATGCAACGGAGGGCGT 60.394 50.000 0.00 0.00 34.69 5.68
3676 4208 0.029300 CAATTATGCAACGGAGGGCG 59.971 55.000 0.00 0.00 34.69 6.13
3677 4209 1.334869 CTCAATTATGCAACGGAGGGC 59.665 52.381 0.00 0.00 0.00 5.19
3678 4210 2.355756 CACTCAATTATGCAACGGAGGG 59.644 50.000 0.00 0.00 0.00 4.30
3679 4211 2.223340 GCACTCAATTATGCAACGGAGG 60.223 50.000 0.00 0.00 41.65 4.30
3680 4212 2.537529 CGCACTCAATTATGCAACGGAG 60.538 50.000 0.00 0.00 42.17 4.63
3682 4214 1.130373 ACGCACTCAATTATGCAACGG 59.870 47.619 0.00 0.00 42.17 4.44
3683 4215 2.525750 ACGCACTCAATTATGCAACG 57.474 45.000 0.00 0.00 42.17 4.10
3684 4216 9.825972 AAATATATACGCACTCAATTATGCAAC 57.174 29.630 0.00 0.00 42.17 4.17
3714 4246 5.994668 TGGTCAAAGTTTGCAAAGACTTTTT 59.005 32.000 21.24 11.25 42.47 1.94
3715 4247 5.546526 TGGTCAAAGTTTGCAAAGACTTTT 58.453 33.333 21.24 13.19 42.47 2.27
3716 4248 5.146010 TGGTCAAAGTTTGCAAAGACTTT 57.854 34.783 19.06 19.06 44.50 2.66
3717 4249 4.799564 TGGTCAAAGTTTGCAAAGACTT 57.200 36.364 21.58 16.62 37.69 3.01
3718 4250 4.747810 CTTGGTCAAAGTTTGCAAAGACT 58.252 39.130 21.58 12.26 0.00 3.24
3813 4345 9.970553 ACATCTAGAATGCCAAACATATATCAT 57.029 29.630 0.00 0.00 38.34 2.45
3819 4351 9.407380 ACATTTACATCTAGAATGCCAAACATA 57.593 29.630 0.00 0.00 38.34 2.29
3820 4352 8.297470 ACATTTACATCTAGAATGCCAAACAT 57.703 30.769 0.00 0.00 42.30 2.71
3821 4353 7.701539 ACATTTACATCTAGAATGCCAAACA 57.298 32.000 0.00 0.00 34.86 2.83
3822 4354 8.986477 AAACATTTACATCTAGAATGCCAAAC 57.014 30.769 0.00 0.00 34.86 2.93
3823 4355 9.995003 AAAAACATTTACATCTAGAATGCCAAA 57.005 25.926 0.00 1.74 34.86 3.28
3824 4356 9.638239 GAAAAACATTTACATCTAGAATGCCAA 57.362 29.630 0.00 0.00 34.86 4.52
3825 4357 9.023962 AGAAAAACATTTACATCTAGAATGCCA 57.976 29.630 0.00 0.00 34.86 4.92
3826 4358 9.508567 GAGAAAAACATTTACATCTAGAATGCC 57.491 33.333 0.00 0.00 34.86 4.40
3827 4359 9.508567 GGAGAAAAACATTTACATCTAGAATGC 57.491 33.333 0.00 0.00 34.86 3.56
3830 4362 9.567776 TGTGGAGAAAAACATTTACATCTAGAA 57.432 29.630 0.00 0.00 0.00 2.10
3831 4363 9.567776 TTGTGGAGAAAAACATTTACATCTAGA 57.432 29.630 0.00 0.00 0.00 2.43
3833 4365 9.959749 GTTTGTGGAGAAAAACATTTACATCTA 57.040 29.630 0.00 0.00 36.50 1.98
3834 4366 8.695456 AGTTTGTGGAGAAAAACATTTACATCT 58.305 29.630 0.00 0.00 38.48 2.90
3835 4367 8.871686 AGTTTGTGGAGAAAAACATTTACATC 57.128 30.769 0.00 0.00 38.48 3.06
3836 4368 9.097257 CAAGTTTGTGGAGAAAAACATTTACAT 57.903 29.630 0.00 0.00 38.48 2.29
3837 4369 7.547370 CCAAGTTTGTGGAGAAAAACATTTACA 59.453 33.333 0.00 0.00 41.65 2.41
3838 4370 7.547722 ACCAAGTTTGTGGAGAAAAACATTTAC 59.452 33.333 0.00 0.00 41.65 2.01
3839 4371 7.616313 ACCAAGTTTGTGGAGAAAAACATTTA 58.384 30.769 0.00 0.00 41.65 1.40
3840 4372 6.472016 ACCAAGTTTGTGGAGAAAAACATTT 58.528 32.000 0.00 0.00 41.65 2.32
3841 4373 6.048732 ACCAAGTTTGTGGAGAAAAACATT 57.951 33.333 0.00 0.00 41.65 2.71
3842 4374 5.186797 TGACCAAGTTTGTGGAGAAAAACAT 59.813 36.000 0.00 0.00 41.65 2.71
3843 4375 4.524714 TGACCAAGTTTGTGGAGAAAAACA 59.475 37.500 0.00 0.00 41.65 2.83
3844 4376 5.066968 TGACCAAGTTTGTGGAGAAAAAC 57.933 39.130 0.00 0.00 41.65 2.43
3845 4377 5.730296 TTGACCAAGTTTGTGGAGAAAAA 57.270 34.783 0.00 0.00 41.65 1.94
3846 4378 5.245075 ACTTTGACCAAGTTTGTGGAGAAAA 59.755 36.000 0.00 0.00 43.89 2.29
3847 4379 4.770010 ACTTTGACCAAGTTTGTGGAGAAA 59.230 37.500 0.00 0.00 43.89 2.52
3848 4380 4.340617 ACTTTGACCAAGTTTGTGGAGAA 58.659 39.130 0.00 0.00 43.89 2.87
3849 4381 3.963129 ACTTTGACCAAGTTTGTGGAGA 58.037 40.909 0.00 0.00 43.89 3.71
3859 4391 4.376340 AAGCTCACAAACTTTGACCAAG 57.624 40.909 8.55 1.82 38.64 3.61
3860 4392 4.799564 AAAGCTCACAAACTTTGACCAA 57.200 36.364 8.55 0.00 34.88 3.67
3866 4398 6.454795 TGAAAAGTCAAAGCTCACAAACTTT 58.545 32.000 0.00 0.00 38.27 2.66
3867 4399 6.024552 TGAAAAGTCAAAGCTCACAAACTT 57.975 33.333 0.00 0.00 0.00 2.66
3868 4400 5.643379 TGAAAAGTCAAAGCTCACAAACT 57.357 34.783 0.00 0.00 0.00 2.66
3869 4401 6.704512 TTTGAAAAGTCAAAGCTCACAAAC 57.295 33.333 0.00 0.00 46.48 2.93
3895 4427 9.842775 CCATTCCATAATGTAGTGCATATAGAT 57.157 33.333 0.00 0.00 40.84 1.98
3896 4428 9.045745 TCCATTCCATAATGTAGTGCATATAGA 57.954 33.333 0.00 0.00 40.84 1.98
3897 4429 9.322773 CTCCATTCCATAATGTAGTGCATATAG 57.677 37.037 0.00 0.00 40.84 1.31
3898 4430 8.267183 CCTCCATTCCATAATGTAGTGCATATA 58.733 37.037 0.00 0.00 40.84 0.86
3899 4431 7.114754 CCTCCATTCCATAATGTAGTGCATAT 58.885 38.462 0.00 0.00 40.84 1.78
3900 4432 6.475504 CCTCCATTCCATAATGTAGTGCATA 58.524 40.000 0.00 0.00 40.84 3.14
3901 4433 5.319453 CCTCCATTCCATAATGTAGTGCAT 58.681 41.667 0.00 0.00 40.84 3.96
3902 4434 4.446167 CCCTCCATTCCATAATGTAGTGCA 60.446 45.833 0.00 0.00 40.84 4.57
3903 4435 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
3904 4436 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
3905 4437 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
3906 4438 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
3907 4439 6.390504 AGTACTCCCTCCATTCCATAATGTA 58.609 40.000 0.00 0.00 40.84 2.29
3908 4440 5.227593 AGTACTCCCTCCATTCCATAATGT 58.772 41.667 0.00 0.00 40.84 2.71
3909 4441 5.832539 AGTACTCCCTCCATTCCATAATG 57.167 43.478 0.00 0.00 41.90 1.90
3910 4442 7.739444 TGAATAGTACTCCCTCCATTCCATAAT 59.261 37.037 0.00 0.00 0.00 1.28
3911 4443 7.016268 GTGAATAGTACTCCCTCCATTCCATAA 59.984 40.741 0.00 0.00 0.00 1.90
3912 4444 6.497259 GTGAATAGTACTCCCTCCATTCCATA 59.503 42.308 0.00 0.00 0.00 2.74
3913 4445 5.308237 GTGAATAGTACTCCCTCCATTCCAT 59.692 44.000 0.00 0.00 0.00 3.41
3914 4446 4.654262 GTGAATAGTACTCCCTCCATTCCA 59.346 45.833 0.00 0.00 0.00 3.53
3915 4447 4.902448 AGTGAATAGTACTCCCTCCATTCC 59.098 45.833 0.00 0.00 0.00 3.01
3916 4448 6.325286 AGAAGTGAATAGTACTCCCTCCATTC 59.675 42.308 0.00 2.66 0.00 2.67
3917 4449 6.206042 AGAAGTGAATAGTACTCCCTCCATT 58.794 40.000 0.00 0.00 0.00 3.16
3918 4450 5.782925 AGAAGTGAATAGTACTCCCTCCAT 58.217 41.667 0.00 0.00 0.00 3.41
3919 4451 5.202004 GAGAAGTGAATAGTACTCCCTCCA 58.798 45.833 0.00 0.00 0.00 3.86
3962 4494 5.062683 GCATCATATGTCTATGCACTTACCG 59.937 44.000 18.24 0.00 44.27 4.02
3971 4503 7.642586 CGCAATAAATGGCATCATATGTCTATG 59.357 37.037 0.00 0.63 35.48 2.23
4040 4575 5.434352 AATTATCAGCTGATGCATGTCAC 57.566 39.130 34.48 0.00 42.74 3.67
4041 4576 5.277634 CGAAATTATCAGCTGATGCATGTCA 60.278 40.000 34.48 13.70 42.74 3.58
4042 4577 5.145059 CGAAATTATCAGCTGATGCATGTC 58.855 41.667 34.48 26.62 42.74 3.06
4043 4578 4.577693 ACGAAATTATCAGCTGATGCATGT 59.422 37.500 34.48 22.27 42.74 3.21
4044 4579 5.104562 ACGAAATTATCAGCTGATGCATG 57.895 39.130 34.48 21.60 42.74 4.06
4053 4591 8.911247 AACTTTTAATGGACGAAATTATCAGC 57.089 30.769 0.00 0.00 0.00 4.26
4081 4619 9.635404 ACTACTAGCAGAATCTATGACTAGTTT 57.365 33.333 15.02 0.00 38.01 2.66
4082 4620 9.280174 GACTACTAGCAGAATCTATGACTAGTT 57.720 37.037 15.02 4.09 38.01 2.24
4083 4621 8.433599 TGACTACTAGCAGAATCTATGACTAGT 58.566 37.037 14.52 14.52 39.15 2.57
4097 4635 8.932945 TCATAATTCTTTGTGACTACTAGCAG 57.067 34.615 0.00 0.00 29.14 4.24
4147 4685 4.713553 TGCCAAGTATTCAAGAACAGACA 58.286 39.130 0.00 0.00 0.00 3.41
4166 4704 5.984233 TGTGTGATCTCGTAAATAATGCC 57.016 39.130 0.00 0.00 0.00 4.40
4170 4708 9.459640 GCTTAGTATGTGTGATCTCGTAAATAA 57.540 33.333 0.00 0.00 0.00 1.40
4178 4716 6.758416 TGTGATTGCTTAGTATGTGTGATCTC 59.242 38.462 0.00 0.00 0.00 2.75
4181 4719 7.870509 ATTGTGATTGCTTAGTATGTGTGAT 57.129 32.000 0.00 0.00 0.00 3.06
4276 4816 0.400093 ATACCACTACTCAGGGCCCC 60.400 60.000 21.43 0.00 0.00 5.80
4282 4822 7.175293 GGACTAATGACCTATACCACTACTCAG 59.825 44.444 0.00 0.00 0.00 3.35
4290 4830 7.310423 GCATGTATGGACTAATGACCTATACCA 60.310 40.741 0.00 0.00 30.14 3.25
4306 4848 3.402110 CGCTTCCTAATGCATGTATGGA 58.598 45.455 0.00 2.96 0.00 3.41
4342 4884 7.609532 CAGGCTTATATTTAGAAATGGAGGGAG 59.390 40.741 0.00 0.00 0.00 4.30
4343 4885 7.073725 ACAGGCTTATATTTAGAAATGGAGGGA 59.926 37.037 0.00 0.00 0.00 4.20
4344 4886 7.234355 ACAGGCTTATATTTAGAAATGGAGGG 58.766 38.462 0.00 0.00 0.00 4.30
4345 4887 8.160106 AGACAGGCTTATATTTAGAAATGGAGG 58.840 37.037 0.00 0.00 0.00 4.30
4360 4902 8.928448 TGTATTGAAATCTCTAGACAGGCTTAT 58.072 33.333 0.00 0.00 27.73 1.73
4361 4903 8.306313 TGTATTGAAATCTCTAGACAGGCTTA 57.694 34.615 0.00 0.00 27.73 3.09
4362 4904 7.124901 TCTGTATTGAAATCTCTAGACAGGCTT 59.875 37.037 5.61 0.00 42.92 4.35
4363 4905 6.609212 TCTGTATTGAAATCTCTAGACAGGCT 59.391 38.462 5.61 0.00 42.92 4.58
4364 4906 6.699642 GTCTGTATTGAAATCTCTAGACAGGC 59.300 42.308 5.61 0.43 42.92 4.85
4365 4907 8.006298 AGTCTGTATTGAAATCTCTAGACAGG 57.994 38.462 5.61 0.00 42.92 4.00
4366 4908 9.944663 GTAGTCTGTATTGAAATCTCTAGACAG 57.055 37.037 0.00 0.00 43.58 3.51
4367 4909 9.462606 TGTAGTCTGTATTGAAATCTCTAGACA 57.537 33.333 0.00 0.00 36.63 3.41
4372 4914 8.353684 CCGTATGTAGTCTGTATTGAAATCTCT 58.646 37.037 0.00 0.00 0.00 3.10
4373 4915 8.350722 TCCGTATGTAGTCTGTATTGAAATCTC 58.649 37.037 0.00 0.00 0.00 2.75
4374 4916 8.234136 TCCGTATGTAGTCTGTATTGAAATCT 57.766 34.615 0.00 0.00 0.00 2.40
4375 4917 8.916654 CATCCGTATGTAGTCTGTATTGAAATC 58.083 37.037 0.00 0.00 0.00 2.17
4376 4918 8.421784 ACATCCGTATGTAGTCTGTATTGAAAT 58.578 33.333 0.00 0.00 44.66 2.17
4377 4919 7.778083 ACATCCGTATGTAGTCTGTATTGAAA 58.222 34.615 0.00 0.00 44.66 2.69
4378 4920 7.342769 ACATCCGTATGTAGTCTGTATTGAA 57.657 36.000 0.00 0.00 44.66 2.69
4379 4921 6.954487 ACATCCGTATGTAGTCTGTATTGA 57.046 37.500 0.00 0.00 44.66 2.57
4421 4963 4.143094 GGAGCAAAACGAGTGAATCTACAC 60.143 45.833 0.00 0.00 40.60 2.90
4422 4964 3.994392 GGAGCAAAACGAGTGAATCTACA 59.006 43.478 0.00 0.00 0.00 2.74
4423 4965 3.060895 CGGAGCAAAACGAGTGAATCTAC 59.939 47.826 0.00 0.00 0.00 2.59
4424 4966 3.250744 CGGAGCAAAACGAGTGAATCTA 58.749 45.455 0.00 0.00 0.00 1.98
4425 4967 2.069273 CGGAGCAAAACGAGTGAATCT 58.931 47.619 0.00 0.00 0.00 2.40
4426 4968 1.798813 ACGGAGCAAAACGAGTGAATC 59.201 47.619 0.00 0.00 0.00 2.52
4427 4969 1.878953 ACGGAGCAAAACGAGTGAAT 58.121 45.000 0.00 0.00 0.00 2.57
4428 4970 2.512485 TACGGAGCAAAACGAGTGAA 57.488 45.000 0.00 0.00 0.00 3.18
4429 4971 2.288579 ACATACGGAGCAAAACGAGTGA 60.289 45.455 0.00 0.00 0.00 3.41
4430 4972 2.066262 ACATACGGAGCAAAACGAGTG 58.934 47.619 0.00 0.00 0.00 3.51
4431 4973 2.450609 ACATACGGAGCAAAACGAGT 57.549 45.000 0.00 0.00 0.00 4.18
4432 4974 3.508762 ACTACATACGGAGCAAAACGAG 58.491 45.455 0.00 0.00 0.00 4.18
4433 4975 3.192001 AGACTACATACGGAGCAAAACGA 59.808 43.478 0.00 0.00 0.00 3.85
4434 4976 3.303495 CAGACTACATACGGAGCAAAACG 59.697 47.826 0.00 0.00 0.00 3.60
4435 4977 4.243270 ACAGACTACATACGGAGCAAAAC 58.757 43.478 0.00 0.00 0.00 2.43
4436 4978 4.530710 ACAGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4437 4979 5.847111 ATACAGACTACATACGGAGCAAA 57.153 39.130 0.00 0.00 0.00 3.68
4438 4980 5.451381 CCAATACAGACTACATACGGAGCAA 60.451 44.000 0.00 0.00 0.00 3.91
4439 4981 4.037565 CCAATACAGACTACATACGGAGCA 59.962 45.833 0.00 0.00 0.00 4.26
4440 4982 4.277672 TCCAATACAGACTACATACGGAGC 59.722 45.833 0.00 0.00 0.00 4.70
4441 4983 6.387041 TTCCAATACAGACTACATACGGAG 57.613 41.667 0.00 0.00 0.00 4.63
4442 4984 6.971726 ATTCCAATACAGACTACATACGGA 57.028 37.500 0.00 0.00 0.00 4.69
4443 4985 7.926555 AGAAATTCCAATACAGACTACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
4444 4986 8.873215 AGAAATTCCAATACAGACTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
4451 4993 8.523658 GCCTTTTTAGAAATTCCAATACAGACT 58.476 33.333 0.00 0.00 0.00 3.24
4452 4994 8.523658 AGCCTTTTTAGAAATTCCAATACAGAC 58.476 33.333 0.00 0.00 0.00 3.51
4453 4995 8.650143 AGCCTTTTTAGAAATTCCAATACAGA 57.350 30.769 0.00 0.00 0.00 3.41
4467 5009 9.333724 CCGTTCCTAAATATAAGCCTTTTTAGA 57.666 33.333 8.15 0.00 34.90 2.10
4468 5010 9.333724 TCCGTTCCTAAATATAAGCCTTTTTAG 57.666 33.333 1.71 1.71 33.47 1.85
4469 5011 9.333724 CTCCGTTCCTAAATATAAGCCTTTTTA 57.666 33.333 0.00 0.00 0.00 1.52
4470 5012 7.284716 CCTCCGTTCCTAAATATAAGCCTTTTT 59.715 37.037 0.00 0.00 0.00 1.94
4471 5013 6.771267 CCTCCGTTCCTAAATATAAGCCTTTT 59.229 38.462 0.00 0.00 0.00 2.27
4472 5014 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
4473 5015 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
4474 5016 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
4475 5017 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
4476 5018 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
4477 5019 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4478 5020 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
4479 5021 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
4480 5022 7.513091 AGAAATACTCCCTCCGTTCCTAAATAT 59.487 37.037 0.00 0.00 0.00 1.28
4481 5023 6.842807 AGAAATACTCCCTCCGTTCCTAAATA 59.157 38.462 0.00 0.00 0.00 1.40
4482 5024 5.666265 AGAAATACTCCCTCCGTTCCTAAAT 59.334 40.000 0.00 0.00 0.00 1.40
4483 5025 5.028131 AGAAATACTCCCTCCGTTCCTAAA 58.972 41.667 0.00 0.00 0.00 1.85
4484 5026 4.617593 AGAAATACTCCCTCCGTTCCTAA 58.382 43.478 0.00 0.00 0.00 2.69
4485 5027 4.079327 AGAGAAATACTCCCTCCGTTCCTA 60.079 45.833 0.00 0.00 45.96 2.94
4486 5028 3.032459 GAGAAATACTCCCTCCGTTCCT 58.968 50.000 0.00 0.00 39.53 3.36
4487 5029 3.032459 AGAGAAATACTCCCTCCGTTCC 58.968 50.000 0.00 0.00 45.96 3.62
4488 5030 4.643784 TGTAGAGAAATACTCCCTCCGTTC 59.356 45.833 0.00 0.00 45.96 3.95
4489 5031 4.401837 GTGTAGAGAAATACTCCCTCCGTT 59.598 45.833 0.00 0.00 45.96 4.44
4490 5032 3.952967 GTGTAGAGAAATACTCCCTCCGT 59.047 47.826 0.00 0.00 45.96 4.69
4491 5033 3.952323 TGTGTAGAGAAATACTCCCTCCG 59.048 47.826 0.00 0.00 45.96 4.63
4492 5034 5.202004 TCTGTGTAGAGAAATACTCCCTCC 58.798 45.833 0.00 0.00 45.96 4.30
4493 5035 6.777213 TTCTGTGTAGAGAAATACTCCCTC 57.223 41.667 0.00 0.00 45.96 4.30
4494 5036 7.741554 ATTTCTGTGTAGAGAAATACTCCCT 57.258 36.000 13.41 0.00 46.34 4.20
4562 5104 9.999009 GCTTATGGTGGTAGTTTAGAAAATAAC 57.001 33.333 0.00 0.00 0.00 1.89
4570 5112 3.527533 TGCGCTTATGGTGGTAGTTTAG 58.472 45.455 9.73 0.00 0.00 1.85
4587 5129 3.747099 AAGTAATGACAGTTCATGCGC 57.253 42.857 0.00 0.00 42.00 6.09
4588 5130 5.319139 CAGAAAGTAATGACAGTTCATGCG 58.681 41.667 0.00 0.00 42.00 4.73
4601 5143 8.306761 CCTTAAGAAAATGGTGCAGAAAGTAAT 58.693 33.333 3.36 0.00 0.00 1.89
4671 5213 9.846248 AAGATAATTTACTTGAGTGCAAACATC 57.154 29.630 0.00 0.00 32.73 3.06
4726 5268 3.220940 AGGCTCCGTACCTAGATGTTAC 58.779 50.000 0.00 0.00 35.10 2.50
4734 5276 3.294214 CTTTCCTTAGGCTCCGTACCTA 58.706 50.000 0.00 0.00 38.81 3.08
4811 5354 2.453638 GCTTACCAGTTCGGCGAGC 61.454 63.158 16.31 16.31 38.41 5.03
4865 5408 5.296813 GTGTAATGCACGGAAGAAAGAAT 57.703 39.130 0.00 0.00 38.45 2.40
4884 5432 5.133221 GCTCCTGTTATTATGGAATGGTGT 58.867 41.667 0.00 0.00 0.00 4.16
4885 5433 4.214119 CGCTCCTGTTATTATGGAATGGTG 59.786 45.833 0.00 0.00 0.00 4.17
4906 5455 2.297701 TCCAATAGCTCAATTTCCCGC 58.702 47.619 0.00 0.00 0.00 6.13
5045 5594 1.665161 GCAGCTCAATCAGTGCACAAC 60.665 52.381 21.04 0.00 39.15 3.32
5062 5611 2.369860 TCCCAGCAATACTATCCTGCAG 59.630 50.000 6.78 6.78 38.58 4.41
5078 5627 7.756395 ATAAAATGAGCTCATATGTTCCCAG 57.244 36.000 28.92 0.00 35.10 4.45
5125 5674 4.040461 TCTCTCCTTAATAGGGATTTGGCG 59.960 45.833 0.00 0.00 42.26 5.69
5150 5720 2.040278 TGTGATCCACCTTCCTGGAAAG 59.960 50.000 10.86 7.06 43.79 2.62
5151 5721 2.061848 TGTGATCCACCTTCCTGGAAA 58.938 47.619 10.86 0.00 43.79 3.13
5152 5722 1.741028 TGTGATCCACCTTCCTGGAA 58.259 50.000 9.14 9.14 43.79 3.53
5153 5723 1.741028 TTGTGATCCACCTTCCTGGA 58.259 50.000 0.00 0.00 44.72 3.86
5154 5724 2.814805 ATTGTGATCCACCTTCCTGG 57.185 50.000 0.00 0.00 42.93 4.45
5155 5725 3.441572 GTGAATTGTGATCCACCTTCCTG 59.558 47.826 0.00 0.00 32.73 3.86
5156 5726 3.074390 TGTGAATTGTGATCCACCTTCCT 59.926 43.478 0.00 0.00 32.73 3.36
5157 5727 3.420893 TGTGAATTGTGATCCACCTTCC 58.579 45.455 0.00 0.00 32.73 3.46
5158 5728 4.074970 ACTGTGAATTGTGATCCACCTTC 58.925 43.478 0.00 0.00 32.73 3.46
5159 5729 3.822735 CACTGTGAATTGTGATCCACCTT 59.177 43.478 0.32 0.00 36.38 3.50
5160 5730 3.072915 TCACTGTGAATTGTGATCCACCT 59.927 43.478 8.27 0.00 38.15 4.00
5161 5731 3.411446 TCACTGTGAATTGTGATCCACC 58.589 45.455 8.27 0.00 38.15 4.61
5162 5732 3.120060 GCTCACTGTGAATTGTGATCCAC 60.120 47.826 12.16 0.00 41.56 4.02
5163 5733 3.076621 GCTCACTGTGAATTGTGATCCA 58.923 45.455 12.16 0.00 41.56 3.41
5164 5734 3.076621 TGCTCACTGTGAATTGTGATCC 58.923 45.455 12.16 0.00 41.56 3.36
5165 5735 4.959596 ATGCTCACTGTGAATTGTGATC 57.040 40.909 12.16 0.00 41.56 2.92
5166 5736 6.600427 TCAATATGCTCACTGTGAATTGTGAT 59.400 34.615 22.49 7.77 41.56 3.06
5167 5737 5.939296 TCAATATGCTCACTGTGAATTGTGA 59.061 36.000 22.49 14.34 40.39 3.58
5168 5738 6.185852 TCAATATGCTCACTGTGAATTGTG 57.814 37.500 22.49 12.84 35.68 3.33
5169 5739 6.822667 TTCAATATGCTCACTGTGAATTGT 57.177 33.333 22.49 9.86 0.00 2.71
5170 5740 8.592155 CATTTTCAATATGCTCACTGTGAATTG 58.408 33.333 19.59 19.59 0.00 2.32
5202 5772 2.106338 TCCCTGAAAGCAGTCACATTCA 59.894 45.455 0.00 0.00 40.63 2.57
5300 5870 6.581712 ACATTGGCACAGAAATAACAAACTT 58.418 32.000 0.00 0.00 42.39 2.66
5381 5952 0.610232 GGAGTGGGCTGTCTGCAAAT 60.610 55.000 3.96 0.00 45.15 2.32
5402 5973 4.422073 TGAAACCGAGCATTCCATAGAT 57.578 40.909 0.00 0.00 0.00 1.98
5417 5988 6.061231 AGAAGAACAACGAGAATTGAAACC 57.939 37.500 0.00 0.00 33.57 3.27
5481 6052 1.133181 TCTGGATTGACTGGCACCCA 61.133 55.000 4.04 4.04 0.00 4.51
5517 6088 1.201954 CGGTGCGACAATCATCTTGTG 60.202 52.381 0.00 0.00 31.96 3.33
5552 6123 8.791675 AGAGGTAAGAAAACTAGTACTACACAC 58.208 37.037 0.00 0.00 0.00 3.82
5554 6125 9.623350 CAAGAGGTAAGAAAACTAGTACTACAC 57.377 37.037 0.00 0.00 0.00 2.90
5573 6150 4.848357 CAAGGATTGTACATCCAAGAGGT 58.152 43.478 19.88 0.00 42.34 3.85
5620 6197 0.955428 TCAAGGCCATGTCGAGTTGC 60.955 55.000 5.01 0.00 0.00 4.17
5691 6286 6.432162 ACAAAATAGTGACTGTGCATCTCAAT 59.568 34.615 0.00 0.00 0.00 2.57
5698 6293 5.122239 GCAGATACAAAATAGTGACTGTGCA 59.878 40.000 0.00 0.00 32.63 4.57
5699 6294 5.352569 AGCAGATACAAAATAGTGACTGTGC 59.647 40.000 0.00 0.00 32.63 4.57
5728 6323 2.266055 GAAGGCCGACTCACAGGG 59.734 66.667 0.00 0.00 0.00 4.45
5751 6346 0.928229 AACAAGCACGAACGACTCAC 59.072 50.000 0.14 0.00 0.00 3.51
5752 6347 1.647346 AAACAAGCACGAACGACTCA 58.353 45.000 0.14 0.00 0.00 3.41
5767 6362 6.400091 CGGTTGTTCGAATTTGTTTCAAAACA 60.400 34.615 0.00 4.24 46.35 2.83
5799 6394 3.250762 TCTTTCTGAAACACTGCCGAATG 59.749 43.478 0.00 0.00 0.00 2.67
5801 6396 2.912771 TCTTTCTGAAACACTGCCGAA 58.087 42.857 0.00 0.00 0.00 4.30
5914 6509 9.433153 ACAAACTACTACTACTAAAATTGCTCC 57.567 33.333 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.