Multiple sequence alignment - TraesCS3B01G320800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G320800 chr3B 100.000 3674 0 0 1 3674 519779726 519776053 0.000000e+00 6785.0
1 TraesCS3B01G320800 chr3B 89.168 517 53 3 2766 3282 152491197 152490684 3.090000e-180 641.0
2 TraesCS3B01G320800 chr3B 94.667 300 16 0 1 300 519784741 519784442 2.000000e-127 466.0
3 TraesCS3B01G320800 chr3B 85.714 119 17 0 1731 1849 103722465 103722347 3.850000e-25 126.0
4 TraesCS3B01G320800 chr5A 98.728 1179 13 2 2497 3674 211635827 211634650 0.000000e+00 2093.0
5 TraesCS3B01G320800 chr5A 99.293 283 1 1 2496 2777 211630601 211630319 9.100000e-141 510.0
6 TraesCS3B01G320800 chr5A 89.735 302 25 5 1 300 328534592 328534889 7.450000e-102 381.0
7 TraesCS3B01G320800 chr5A 79.814 322 38 17 1966 2284 691677309 691677012 3.720000e-50 209.0
8 TraesCS3B01G320800 chr5A 90.789 152 12 2 1722 1872 691677529 691677379 6.220000e-48 202.0
9 TraesCS3B01G320800 chr5A 89.928 139 12 2 1136 1273 691678038 691677901 1.050000e-40 178.0
10 TraesCS3B01G320800 chr5A 85.938 128 18 0 2154 2281 451389618 451389745 1.780000e-28 137.0
11 TraesCS3B01G320800 chr5A 83.088 136 21 2 1731 1865 436089395 436089529 4.980000e-24 122.0
12 TraesCS3B01G320800 chr6A 98.139 1182 18 4 2496 3674 486832679 486831499 0.000000e+00 2058.0
13 TraesCS3B01G320800 chr6A 87.024 578 60 13 2832 3406 503561652 503562217 4.000000e-179 638.0
14 TraesCS3B01G320800 chr6A 99.293 283 1 1 2496 2777 486827450 486827168 9.100000e-141 510.0
15 TraesCS3B01G320800 chr6A 85.417 288 32 8 2496 2779 9330196 9329915 1.290000e-74 291.0
16 TraesCS3B01G320800 chr6A 84.375 288 33 9 2496 2777 421462571 421462852 4.680000e-69 272.0
17 TraesCS3B01G320800 chr6A 80.628 191 25 10 2495 2678 9335853 9335668 1.780000e-28 137.0
18 TraesCS3B01G320800 chr6A 86.869 99 8 3 2740 2837 503530811 503530905 5.020000e-19 106.0
19 TraesCS3B01G320800 chr3A 90.312 1600 85 29 912 2495 514612972 514611427 0.000000e+00 2032.0
20 TraesCS3B01G320800 chr3A 78.660 403 49 17 304 691 514613632 514613252 2.210000e-57 233.0
21 TraesCS3B01G320800 chr3A 82.222 135 24 0 1732 1866 72897701 72897567 2.320000e-22 117.0
22 TraesCS3B01G320800 chr7B 97.627 1180 25 3 2496 3674 228358737 228357560 0.000000e+00 2021.0
23 TraesCS3B01G320800 chr7B 98.294 293 3 2 2496 2786 228353513 228353221 2.530000e-141 512.0
24 TraesCS3B01G320800 chr3D 89.052 1562 76 27 968 2495 395065924 395064424 0.000000e+00 1849.0
25 TraesCS3B01G320800 chr3D 94.340 371 8 7 601 971 395066525 395066168 1.150000e-154 556.0
26 TraesCS3B01G320800 chr3D 96.990 299 6 1 301 599 395066853 395066558 1.970000e-137 499.0
27 TraesCS3B01G320800 chr3D 89.899 297 28 2 5 301 313941577 313941283 7.450000e-102 381.0
28 TraesCS3B01G320800 chr3D 89.667 300 29 2 1 300 313946579 313946282 7.450000e-102 381.0
29 TraesCS3B01G320800 chr1B 89.041 511 54 2 2766 3276 539851470 539851978 1.860000e-177 632.0
30 TraesCS3B01G320800 chr1B 86.716 542 56 5 2817 3351 252998057 252997525 4.090000e-164 588.0
31 TraesCS3B01G320800 chr7A 79.581 906 148 23 2766 3646 540908767 540907874 6.740000e-172 614.0
32 TraesCS3B01G320800 chr4B 87.819 509 58 4 2768 3276 42913222 42913726 8.780000e-166 593.0
33 TraesCS3B01G320800 chr4B 79.495 317 42 15 1972 2284 654043112 654042815 1.730000e-48 204.0
34 TraesCS3B01G320800 chr4B 88.571 140 14 2 1136 1274 654043841 654043703 6.310000e-38 169.0
35 TraesCS3B01G320800 chr2B 90.667 300 28 0 1 300 215616313 215616612 2.060000e-107 399.0
36 TraesCS3B01G320800 chr2B 90.661 257 24 0 1 257 215602293 215602549 3.510000e-90 342.0
37 TraesCS3B01G320800 chr2B 90.361 83 8 0 1972 2054 498310555 498310473 3.880000e-20 110.0
38 TraesCS3B01G320800 chrUn 88.372 301 31 4 1 300 79141792 79141495 3.490000e-95 359.0
39 TraesCS3B01G320800 chrUn 88.000 300 34 2 1 300 79146805 79146508 1.620000e-93 353.0
40 TraesCS3B01G320800 chrUn 84.337 83 13 0 1972 2054 232286089 232286007 8.460000e-12 82.4
41 TraesCS3B01G320800 chr5B 82.508 303 44 8 1 300 152544293 152543997 1.310000e-64 257.0
42 TraesCS3B01G320800 chr5B 83.824 136 20 2 1731 1865 391144957 391145091 1.070000e-25 128.0
43 TraesCS3B01G320800 chr6D 84.015 269 30 11 2514 2777 348997130 348996870 2.830000e-61 246.0
44 TraesCS3B01G320800 chr4D 90.728 151 13 1 1722 1872 507560053 507560202 2.240000e-47 200.0
45 TraesCS3B01G320800 chr4D 78.864 317 42 15 1966 2280 507560263 507560556 1.350000e-44 191.0
46 TraesCS3B01G320800 chr4D 89.209 139 13 2 1136 1273 507559405 507559542 4.880000e-39 172.0
47 TraesCS3B01G320800 chr5D 87.324 142 18 0 1131 1272 350952377 350952518 2.940000e-36 163.0
48 TraesCS3B01G320800 chr5D 88.281 128 15 0 2154 2281 350954099 350954226 1.770000e-33 154.0
49 TraesCS3B01G320800 chr5D 83.212 137 19 4 1731 1865 334255464 334255598 4.980000e-24 122.0
50 TraesCS3B01G320800 chr2D 90.361 83 8 0 1972 2054 424015075 424014993 3.880000e-20 110.0
51 TraesCS3B01G320800 chr2A 90.361 83 8 0 1972 2054 564218839 564218921 3.880000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G320800 chr3B 519776053 519779726 3673 True 6785.0 6785 100.000000 1 3674 1 chr3B.!!$R3 3673
1 TraesCS3B01G320800 chr3B 152490684 152491197 513 True 641.0 641 89.168000 2766 3282 1 chr3B.!!$R2 516
2 TraesCS3B01G320800 chr5A 211634650 211635827 1177 True 2093.0 2093 98.728000 2497 3674 1 chr5A.!!$R2 1177
3 TraesCS3B01G320800 chr6A 486831499 486832679 1180 True 2058.0 2058 98.139000 2496 3674 1 chr6A.!!$R4 1178
4 TraesCS3B01G320800 chr6A 503561652 503562217 565 False 638.0 638 87.024000 2832 3406 1 chr6A.!!$F3 574
5 TraesCS3B01G320800 chr3A 514611427 514613632 2205 True 1132.5 2032 84.486000 304 2495 2 chr3A.!!$R2 2191
6 TraesCS3B01G320800 chr7B 228357560 228358737 1177 True 2021.0 2021 97.627000 2496 3674 1 chr7B.!!$R2 1178
7 TraesCS3B01G320800 chr3D 395064424 395066853 2429 True 968.0 1849 93.460667 301 2495 3 chr3D.!!$R3 2194
8 TraesCS3B01G320800 chr1B 539851470 539851978 508 False 632.0 632 89.041000 2766 3276 1 chr1B.!!$F1 510
9 TraesCS3B01G320800 chr1B 252997525 252998057 532 True 588.0 588 86.716000 2817 3351 1 chr1B.!!$R1 534
10 TraesCS3B01G320800 chr7A 540907874 540908767 893 True 614.0 614 79.581000 2766 3646 1 chr7A.!!$R1 880
11 TraesCS3B01G320800 chr4B 42913222 42913726 504 False 593.0 593 87.819000 2768 3276 1 chr4B.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.106619 AACACAGTTAACGGGCCCAA 60.107 50.0 24.92 5.6 0.00 4.12 F
172 173 0.366871 CAAGCTGGATCGACGAAACG 59.633 55.0 0.00 0.0 0.00 3.60 F
241 242 0.371645 CTCGCATTTGACTCTTCCGC 59.628 55.0 0.00 0.0 0.00 5.54 F
558 559 0.400213 TGGCCTCATCGGAAACAACT 59.600 50.0 3.32 0.0 33.16 3.16 F
1596 1971 0.942962 GCAAGCTTATCATCGCTGCT 59.057 50.0 0.00 0.0 36.45 4.24 F
1866 2269 1.146358 GCGACATCGGAAGCAGGTAC 61.146 60.0 3.08 0.0 40.23 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1475 0.034574 CCCCATTGATCGGTCCAACA 60.035 55.000 0.00 0.0 0.00 3.33 R
1126 1480 0.106894 GACCTCCCCATTGATCGGTC 59.893 60.000 0.00 0.0 34.79 4.79 R
2166 2580 0.174845 CGTCGAGATTTACCAGGGCA 59.825 55.000 0.00 0.0 0.00 5.36 R
2225 2639 0.179134 GTACAGCTGCTCCGATTCGT 60.179 55.000 15.27 0.0 0.00 3.85 R
2457 2871 1.640069 CTGAGCAACGCATGGATCG 59.360 57.895 0.00 0.0 0.00 3.69 R
3540 3989 5.644206 CCTATACAGCTCGAAGTATGCTAGA 59.356 44.000 12.52 0.0 35.05 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.601562 CGTAGCTATTCCGCCCAAC 58.398 57.895 0.00 0.00 0.00 3.77
29 30 0.878961 CGTAGCTATTCCGCCCAACC 60.879 60.000 0.00 0.00 0.00 3.77
30 31 0.179468 GTAGCTATTCCGCCCAACCA 59.821 55.000 0.00 0.00 0.00 3.67
31 32 0.179468 TAGCTATTCCGCCCAACCAC 59.821 55.000 0.00 0.00 0.00 4.16
32 33 2.119029 GCTATTCCGCCCAACCACC 61.119 63.158 0.00 0.00 0.00 4.61
33 34 1.453197 CTATTCCGCCCAACCACCC 60.453 63.158 0.00 0.00 0.00 4.61
34 35 2.204865 CTATTCCGCCCAACCACCCA 62.205 60.000 0.00 0.00 0.00 4.51
35 36 2.487274 TATTCCGCCCAACCACCCAC 62.487 60.000 0.00 0.00 0.00 4.61
38 39 4.885270 CGCCCAACCACCCACACA 62.885 66.667 0.00 0.00 0.00 3.72
39 40 2.912025 GCCCAACCACCCACACAG 60.912 66.667 0.00 0.00 0.00 3.66
40 41 2.912025 CCCAACCACCCACACAGC 60.912 66.667 0.00 0.00 0.00 4.40
41 42 2.195683 CCAACCACCCACACAGCT 59.804 61.111 0.00 0.00 0.00 4.24
42 43 1.454104 CCAACCACCCACACAGCTA 59.546 57.895 0.00 0.00 0.00 3.32
43 44 0.889186 CCAACCACCCACACAGCTAC 60.889 60.000 0.00 0.00 0.00 3.58
44 45 0.179032 CAACCACCCACACAGCTACA 60.179 55.000 0.00 0.00 0.00 2.74
45 46 0.179029 AACCACCCACACAGCTACAC 60.179 55.000 0.00 0.00 0.00 2.90
46 47 1.341913 ACCACCCACACAGCTACACA 61.342 55.000 0.00 0.00 0.00 3.72
47 48 0.179032 CCACCCACACAGCTACACAA 60.179 55.000 0.00 0.00 0.00 3.33
48 49 1.674359 CACCCACACAGCTACACAAA 58.326 50.000 0.00 0.00 0.00 2.83
49 50 2.229792 CACCCACACAGCTACACAAAT 58.770 47.619 0.00 0.00 0.00 2.32
50 51 2.030893 CACCCACACAGCTACACAAATG 60.031 50.000 0.00 0.00 0.00 2.32
51 52 1.541147 CCCACACAGCTACACAAATGG 59.459 52.381 0.00 0.00 0.00 3.16
52 53 2.229792 CCACACAGCTACACAAATGGT 58.770 47.619 0.00 0.00 0.00 3.55
53 54 3.407698 CCACACAGCTACACAAATGGTA 58.592 45.455 0.00 0.00 0.00 3.25
54 55 3.188460 CCACACAGCTACACAAATGGTAC 59.812 47.826 0.00 0.00 0.00 3.34
66 67 4.615901 TGGTACAAGCATCAGCCG 57.384 55.556 0.00 0.00 43.56 5.52
67 68 1.979262 TGGTACAAGCATCAGCCGA 59.021 52.632 0.00 0.00 43.56 5.54
68 69 0.323302 TGGTACAAGCATCAGCCGAA 59.677 50.000 0.00 0.00 43.56 4.30
69 70 1.009829 GGTACAAGCATCAGCCGAAG 58.990 55.000 0.00 0.00 43.56 3.79
70 71 0.375106 GTACAAGCATCAGCCGAAGC 59.625 55.000 0.00 0.00 43.56 3.86
71 72 0.744414 TACAAGCATCAGCCGAAGCC 60.744 55.000 0.00 0.00 43.56 4.35
72 73 2.821366 AAGCATCAGCCGAAGCCG 60.821 61.111 0.00 0.00 43.56 5.52
87 88 4.493747 CCGCCGTCCGACTCCTTC 62.494 72.222 0.00 0.00 40.02 3.46
88 89 4.493747 CGCCGTCCGACTCCTTCC 62.494 72.222 0.00 0.00 40.02 3.46
89 90 3.069318 GCCGTCCGACTCCTTCCT 61.069 66.667 0.00 0.00 0.00 3.36
90 91 1.751927 GCCGTCCGACTCCTTCCTA 60.752 63.158 0.00 0.00 0.00 2.94
91 92 1.318158 GCCGTCCGACTCCTTCCTAA 61.318 60.000 0.00 0.00 0.00 2.69
92 93 0.455005 CCGTCCGACTCCTTCCTAAC 59.545 60.000 0.00 0.00 0.00 2.34
93 94 1.461559 CGTCCGACTCCTTCCTAACT 58.538 55.000 0.00 0.00 0.00 2.24
94 95 2.636830 CGTCCGACTCCTTCCTAACTA 58.363 52.381 0.00 0.00 0.00 2.24
95 96 3.212685 CGTCCGACTCCTTCCTAACTAT 58.787 50.000 0.00 0.00 0.00 2.12
96 97 3.631227 CGTCCGACTCCTTCCTAACTATT 59.369 47.826 0.00 0.00 0.00 1.73
97 98 4.818546 CGTCCGACTCCTTCCTAACTATTA 59.181 45.833 0.00 0.00 0.00 0.98
98 99 5.277731 CGTCCGACTCCTTCCTAACTATTAC 60.278 48.000 0.00 0.00 0.00 1.89
99 100 5.591877 GTCCGACTCCTTCCTAACTATTACA 59.408 44.000 0.00 0.00 0.00 2.41
100 101 6.096001 GTCCGACTCCTTCCTAACTATTACAA 59.904 42.308 0.00 0.00 0.00 2.41
101 102 6.837568 TCCGACTCCTTCCTAACTATTACAAT 59.162 38.462 0.00 0.00 0.00 2.71
102 103 6.924060 CCGACTCCTTCCTAACTATTACAATG 59.076 42.308 0.00 0.00 0.00 2.82
103 104 6.924060 CGACTCCTTCCTAACTATTACAATGG 59.076 42.308 0.00 0.00 0.00 3.16
104 105 7.201884 CGACTCCTTCCTAACTATTACAATGGA 60.202 40.741 0.00 0.00 0.00 3.41
105 106 8.024145 ACTCCTTCCTAACTATTACAATGGAG 57.976 38.462 0.00 0.00 41.15 3.86
106 107 7.844779 ACTCCTTCCTAACTATTACAATGGAGA 59.155 37.037 0.00 0.00 39.36 3.71
107 108 8.019656 TCCTTCCTAACTATTACAATGGAGAC 57.980 38.462 0.00 0.00 0.00 3.36
108 109 7.844779 TCCTTCCTAACTATTACAATGGAGACT 59.155 37.037 0.00 0.00 0.00 3.24
109 110 9.144298 CCTTCCTAACTATTACAATGGAGACTA 57.856 37.037 0.00 0.00 0.00 2.59
110 111 9.968870 CTTCCTAACTATTACAATGGAGACTAC 57.031 37.037 0.00 0.00 0.00 2.73
111 112 9.710818 TTCCTAACTATTACAATGGAGACTACT 57.289 33.333 0.00 0.00 0.00 2.57
112 113 9.132923 TCCTAACTATTACAATGGAGACTACTG 57.867 37.037 0.00 0.00 0.00 2.74
113 114 8.361139 CCTAACTATTACAATGGAGACTACTGG 58.639 40.741 0.00 0.00 0.00 4.00
114 115 6.163135 ACTATTACAATGGAGACTACTGGC 57.837 41.667 0.00 0.00 0.00 4.85
115 116 5.900123 ACTATTACAATGGAGACTACTGGCT 59.100 40.000 0.00 0.00 0.00 4.75
116 117 7.067421 ACTATTACAATGGAGACTACTGGCTA 58.933 38.462 0.00 0.00 0.00 3.93
117 118 7.730784 ACTATTACAATGGAGACTACTGGCTAT 59.269 37.037 0.00 0.00 0.00 2.97
118 119 6.808321 TTACAATGGAGACTACTGGCTATT 57.192 37.500 0.00 0.00 0.00 1.73
119 120 5.700402 ACAATGGAGACTACTGGCTATTT 57.300 39.130 0.00 0.00 0.00 1.40
120 121 6.808321 ACAATGGAGACTACTGGCTATTTA 57.192 37.500 0.00 0.00 0.00 1.40
121 122 7.195374 ACAATGGAGACTACTGGCTATTTAA 57.805 36.000 0.00 0.00 0.00 1.52
122 123 7.630082 ACAATGGAGACTACTGGCTATTTAAA 58.370 34.615 0.00 0.00 0.00 1.52
123 124 7.770897 ACAATGGAGACTACTGGCTATTTAAAG 59.229 37.037 0.00 0.00 0.00 1.85
124 125 6.235231 TGGAGACTACTGGCTATTTAAAGG 57.765 41.667 0.00 0.00 0.00 3.11
125 126 5.962031 TGGAGACTACTGGCTATTTAAAGGA 59.038 40.000 0.00 0.00 0.00 3.36
126 127 6.098409 TGGAGACTACTGGCTATTTAAAGGAG 59.902 42.308 0.00 0.00 0.00 3.69
127 128 6.324254 GGAGACTACTGGCTATTTAAAGGAGA 59.676 42.308 4.48 0.00 0.00 3.71
128 129 7.015779 GGAGACTACTGGCTATTTAAAGGAGAT 59.984 40.741 4.48 0.00 0.00 2.75
129 130 7.731054 AGACTACTGGCTATTTAAAGGAGATG 58.269 38.462 4.48 0.00 0.00 2.90
130 131 7.565398 AGACTACTGGCTATTTAAAGGAGATGA 59.435 37.037 4.48 0.00 0.00 2.92
131 132 7.501844 ACTACTGGCTATTTAAAGGAGATGAC 58.498 38.462 4.48 0.00 0.00 3.06
132 133 5.685728 ACTGGCTATTTAAAGGAGATGACC 58.314 41.667 4.48 0.00 0.00 4.02
133 134 4.703897 TGGCTATTTAAAGGAGATGACCG 58.296 43.478 4.48 0.00 34.73 4.79
134 135 4.163458 TGGCTATTTAAAGGAGATGACCGT 59.837 41.667 4.48 0.00 34.73 4.83
135 136 5.123936 GGCTATTTAAAGGAGATGACCGTT 58.876 41.667 4.48 0.00 35.91 4.44
136 137 6.126997 TGGCTATTTAAAGGAGATGACCGTTA 60.127 38.462 4.48 0.00 34.01 3.18
137 138 6.764560 GGCTATTTAAAGGAGATGACCGTTAA 59.235 38.462 0.00 0.00 40.21 2.01
138 139 7.254692 GGCTATTTAAAGGAGATGACCGTTAAC 60.255 40.741 0.00 0.00 41.07 2.01
139 140 7.279313 GCTATTTAAAGGAGATGACCGTTAACA 59.721 37.037 6.39 0.00 41.07 2.41
140 141 6.790285 TTTAAAGGAGATGACCGTTAACAC 57.210 37.500 6.39 0.00 41.07 3.32
141 142 4.345859 AAAGGAGATGACCGTTAACACA 57.654 40.909 6.39 3.21 34.73 3.72
142 143 3.594603 AGGAGATGACCGTTAACACAG 57.405 47.619 6.39 0.00 34.73 3.66
143 144 2.897969 AGGAGATGACCGTTAACACAGT 59.102 45.455 6.39 0.00 34.73 3.55
144 145 3.323979 AGGAGATGACCGTTAACACAGTT 59.676 43.478 6.39 0.00 34.73 3.16
145 146 4.525487 AGGAGATGACCGTTAACACAGTTA 59.475 41.667 6.39 0.00 34.73 2.24
146 147 5.011329 AGGAGATGACCGTTAACACAGTTAA 59.989 40.000 6.39 0.00 34.73 2.01
147 148 5.119743 GGAGATGACCGTTAACACAGTTAAC 59.880 44.000 18.14 18.14 0.00 2.01
152 153 2.975410 GTTAACACAGTTAACGGGCC 57.025 50.000 14.65 0.00 0.00 5.80
153 154 1.536766 GTTAACACAGTTAACGGGCCC 59.463 52.381 13.57 13.57 0.00 5.80
154 155 0.763652 TAACACAGTTAACGGGCCCA 59.236 50.000 24.92 0.00 0.00 5.36
155 156 0.106619 AACACAGTTAACGGGCCCAA 60.107 50.000 24.92 5.60 0.00 4.12
156 157 0.536460 ACACAGTTAACGGGCCCAAG 60.536 55.000 24.92 9.21 0.00 3.61
157 158 1.602605 ACAGTTAACGGGCCCAAGC 60.603 57.895 24.92 8.64 38.76 4.01
158 159 1.303317 CAGTTAACGGGCCCAAGCT 60.303 57.895 24.92 11.05 39.73 3.74
159 160 1.303317 AGTTAACGGGCCCAAGCTG 60.303 57.895 24.92 7.44 39.73 4.24
160 161 2.034999 TTAACGGGCCCAAGCTGG 59.965 61.111 24.92 6.57 39.73 4.85
161 162 2.530672 TTAACGGGCCCAAGCTGGA 61.531 57.895 24.92 0.00 40.96 3.86
162 163 1.858739 TTAACGGGCCCAAGCTGGAT 61.859 55.000 24.92 0.74 40.96 3.41
163 164 2.265467 TAACGGGCCCAAGCTGGATC 62.265 60.000 24.92 0.00 40.96 3.36
165 166 3.797353 GGGCCCAAGCTGGATCGA 61.797 66.667 19.95 0.00 40.96 3.59
166 167 2.514824 GGCCCAAGCTGGATCGAC 60.515 66.667 0.00 0.00 40.96 4.20
167 168 2.892425 GCCCAAGCTGGATCGACG 60.892 66.667 4.00 0.00 40.96 5.12
168 169 2.892640 CCCAAGCTGGATCGACGA 59.107 61.111 0.00 0.00 40.96 4.20
169 170 1.218047 CCCAAGCTGGATCGACGAA 59.782 57.895 0.00 0.00 40.96 3.85
170 171 0.391130 CCCAAGCTGGATCGACGAAA 60.391 55.000 0.00 0.00 40.96 3.46
171 172 0.721718 CCAAGCTGGATCGACGAAAC 59.278 55.000 0.00 0.00 40.96 2.78
172 173 0.366871 CAAGCTGGATCGACGAAACG 59.633 55.000 0.00 0.00 0.00 3.60
173 174 1.352156 AAGCTGGATCGACGAAACGC 61.352 55.000 0.00 2.65 0.00 4.84
175 176 3.126722 CTGGATCGACGAAACGCGC 62.127 63.158 5.73 0.00 46.04 6.86
176 177 2.879462 GGATCGACGAAACGCGCT 60.879 61.111 5.73 0.00 46.04 5.92
177 178 2.313374 GATCGACGAAACGCGCTG 59.687 61.111 5.73 1.02 46.04 5.18
178 179 3.126722 GATCGACGAAACGCGCTGG 62.127 63.158 5.73 0.00 46.04 4.85
190 191 3.121030 CGCTGGCGTCCTCCTTTG 61.121 66.667 6.83 0.00 34.35 2.77
191 192 3.435186 GCTGGCGTCCTCCTTTGC 61.435 66.667 0.00 0.00 0.00 3.68
194 195 2.436824 GGCGTCCTCCTTTGCCTC 60.437 66.667 0.00 0.00 44.16 4.70
195 196 2.347490 GCGTCCTCCTTTGCCTCA 59.653 61.111 0.00 0.00 0.00 3.86
196 197 1.078143 GCGTCCTCCTTTGCCTCAT 60.078 57.895 0.00 0.00 0.00 2.90
197 198 1.372087 GCGTCCTCCTTTGCCTCATG 61.372 60.000 0.00 0.00 0.00 3.07
198 199 0.745845 CGTCCTCCTTTGCCTCATGG 60.746 60.000 0.00 0.00 0.00 3.66
199 200 0.394899 GTCCTCCTTTGCCTCATGGG 60.395 60.000 0.00 0.00 38.36 4.00
209 210 4.899239 CTCATGGGCCGGCTCGTC 62.899 72.222 28.56 9.46 0.00 4.20
220 221 4.554036 GCTCGTCCCAGGCCCATC 62.554 72.222 0.00 0.00 0.00 3.51
221 222 2.765807 CTCGTCCCAGGCCCATCT 60.766 66.667 0.00 0.00 0.00 2.90
222 223 2.764128 TCGTCCCAGGCCCATCTC 60.764 66.667 0.00 0.00 0.00 2.75
223 224 2.765807 CGTCCCAGGCCCATCTCT 60.766 66.667 0.00 0.00 0.00 3.10
224 225 2.801631 CGTCCCAGGCCCATCTCTC 61.802 68.421 0.00 0.00 0.00 3.20
225 226 2.444706 TCCCAGGCCCATCTCTCG 60.445 66.667 0.00 0.00 0.00 4.04
226 227 4.247380 CCCAGGCCCATCTCTCGC 62.247 72.222 0.00 0.00 0.00 5.03
227 228 3.473647 CCAGGCCCATCTCTCGCA 61.474 66.667 0.00 0.00 0.00 5.10
228 229 2.815945 CCAGGCCCATCTCTCGCAT 61.816 63.158 0.00 0.00 0.00 4.73
229 230 1.147824 CAGGCCCATCTCTCGCATT 59.852 57.895 0.00 0.00 0.00 3.56
230 231 0.465097 CAGGCCCATCTCTCGCATTT 60.465 55.000 0.00 0.00 0.00 2.32
231 232 0.465097 AGGCCCATCTCTCGCATTTG 60.465 55.000 0.00 0.00 0.00 2.32
232 233 0.464373 GGCCCATCTCTCGCATTTGA 60.464 55.000 0.00 0.00 0.00 2.69
233 234 0.659957 GCCCATCTCTCGCATTTGAC 59.340 55.000 0.00 0.00 0.00 3.18
234 235 1.745141 GCCCATCTCTCGCATTTGACT 60.745 52.381 0.00 0.00 0.00 3.41
235 236 2.208431 CCCATCTCTCGCATTTGACTC 58.792 52.381 0.00 0.00 0.00 3.36
236 237 2.158986 CCCATCTCTCGCATTTGACTCT 60.159 50.000 0.00 0.00 0.00 3.24
237 238 3.529533 CCATCTCTCGCATTTGACTCTT 58.470 45.455 0.00 0.00 0.00 2.85
238 239 3.555139 CCATCTCTCGCATTTGACTCTTC 59.445 47.826 0.00 0.00 0.00 2.87
239 240 3.238108 TCTCTCGCATTTGACTCTTCC 57.762 47.619 0.00 0.00 0.00 3.46
240 241 1.923204 CTCTCGCATTTGACTCTTCCG 59.077 52.381 0.00 0.00 0.00 4.30
241 242 0.371645 CTCGCATTTGACTCTTCCGC 59.628 55.000 0.00 0.00 0.00 5.54
242 243 1.059369 CGCATTTGACTCTTCCGCG 59.941 57.895 0.00 0.00 34.89 6.46
243 244 1.226128 GCATTTGACTCTTCCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
244 245 1.425428 CATTTGACTCTTCCGCGCC 59.575 57.895 0.00 0.00 0.00 6.53
245 246 1.745489 ATTTGACTCTTCCGCGCCC 60.745 57.895 0.00 0.00 0.00 6.13
246 247 2.185310 ATTTGACTCTTCCGCGCCCT 62.185 55.000 0.00 0.00 0.00 5.19
247 248 2.781595 TTTGACTCTTCCGCGCCCTC 62.782 60.000 0.00 0.00 0.00 4.30
248 249 4.856607 GACTCTTCCGCGCCCTCG 62.857 72.222 0.00 0.00 39.07 4.63
250 251 4.856607 CTCTTCCGCGCCCTCGTC 62.857 72.222 0.00 0.00 38.14 4.20
268 269 3.488090 GCGTGCCGGAACAGCTAC 61.488 66.667 14.51 0.00 0.00 3.58
269 270 2.048597 CGTGCCGGAACAGCTACA 60.049 61.111 14.51 0.00 0.00 2.74
270 271 2.094659 CGTGCCGGAACAGCTACAG 61.095 63.158 14.51 0.00 0.00 2.74
271 272 1.004918 GTGCCGGAACAGCTACAGT 60.005 57.895 8.05 0.00 0.00 3.55
272 273 1.005037 TGCCGGAACAGCTACAGTG 60.005 57.895 5.05 0.00 0.00 3.66
273 274 2.391389 GCCGGAACAGCTACAGTGC 61.391 63.158 5.05 0.00 0.00 4.40
274 275 1.293498 CCGGAACAGCTACAGTGCT 59.707 57.895 0.00 0.00 45.18 4.40
285 286 2.643272 CAGTGCTGCTGCCTGTTG 59.357 61.111 13.47 2.62 38.52 3.33
286 287 2.191513 CAGTGCTGCTGCCTGTTGT 61.192 57.895 13.47 0.00 38.52 3.32
287 288 1.895707 AGTGCTGCTGCCTGTTGTC 60.896 57.895 13.47 0.00 38.71 3.18
288 289 2.974148 TGCTGCTGCCTGTTGTCG 60.974 61.111 13.47 0.00 38.71 4.35
289 290 3.730761 GCTGCTGCCTGTTGTCGG 61.731 66.667 3.85 0.00 0.00 4.79
290 291 3.052082 CTGCTGCCTGTTGTCGGG 61.052 66.667 0.00 0.00 42.72 5.14
297 298 4.680237 CTGTTGTCGGGCCGCTGA 62.680 66.667 23.83 5.89 0.00 4.26
298 299 4.980805 TGTTGTCGGGCCGCTGAC 62.981 66.667 23.83 18.56 35.67 3.51
299 300 4.980805 GTTGTCGGGCCGCTGACA 62.981 66.667 23.83 18.36 42.98 3.58
468 469 1.184431 TGTGCCACCCATGCATAAAG 58.816 50.000 0.00 0.00 41.46 1.85
548 549 2.125106 GGTGGTCGTGGCCTCATC 60.125 66.667 3.32 0.00 0.00 2.92
558 559 0.400213 TGGCCTCATCGGAAACAACT 59.600 50.000 3.32 0.00 33.16 3.16
599 600 8.753133 CATGTATGTACTACCATCCATAGACAT 58.247 37.037 0.00 0.00 31.39 3.06
621 653 6.326064 ACATCAAGCTAGGTCATGAGATTAGT 59.674 38.462 16.77 3.21 0.00 2.24
627 659 5.186797 GCTAGGTCATGAGATTAGTGGCTAT 59.813 44.000 0.00 0.00 0.00 2.97
777 839 3.430042 TGAGCCTCTTTTGAGCATCTT 57.570 42.857 0.00 0.00 44.93 2.40
791 853 1.881973 GCATCTTGGCAAGAACTGTCA 59.118 47.619 31.57 9.45 41.63 3.58
792 854 2.351157 GCATCTTGGCAAGAACTGTCAC 60.351 50.000 31.57 11.53 40.11 3.67
793 855 3.144506 CATCTTGGCAAGAACTGTCACT 58.855 45.455 31.57 11.66 40.11 3.41
1024 1378 3.555168 GGCCGTTGCTGCTCTATATAACT 60.555 47.826 0.00 0.00 37.74 2.24
1088 1442 1.071385 CCCGATCCATCTTCTTCCCAG 59.929 57.143 0.00 0.00 0.00 4.45
1100 1454 3.834489 TCTTCCCAGATCTGCATTCTC 57.166 47.619 17.76 0.00 0.00 2.87
1108 1462 2.299582 AGATCTGCATTCTCCCTCATCG 59.700 50.000 0.00 0.00 0.00 3.84
1119 1473 4.161295 CTCATCGGGCGGCCTGAA 62.161 66.667 32.60 17.47 42.74 3.02
1120 1474 4.467084 TCATCGGGCGGCCTGAAC 62.467 66.667 32.60 8.82 42.74 3.18
1121 1475 4.473520 CATCGGGCGGCCTGAACT 62.474 66.667 32.60 16.14 42.74 3.01
1122 1476 4.473520 ATCGGGCGGCCTGAACTG 62.474 66.667 32.60 9.35 42.74 3.16
1125 1479 3.365265 GGGCGGCCTGAACTGTTG 61.365 66.667 22.87 0.00 0.00 3.33
1126 1480 3.365265 GGCGGCCTGAACTGTTGG 61.365 66.667 12.87 0.00 0.00 3.77
1129 1483 1.966451 CGGCCTGAACTGTTGGACC 60.966 63.158 0.00 0.00 0.00 4.46
1524 1885 1.069432 GTGTGAGTTGCGACGTCTCTA 60.069 52.381 14.70 0.00 0.00 2.43
1596 1971 0.942962 GCAAGCTTATCATCGCTGCT 59.057 50.000 0.00 0.00 36.45 4.24
1597 1972 1.332997 GCAAGCTTATCATCGCTGCTT 59.667 47.619 0.00 0.00 43.61 3.91
1598 1973 2.545526 GCAAGCTTATCATCGCTGCTTA 59.454 45.455 0.00 0.00 41.31 3.09
1599 1974 3.002656 GCAAGCTTATCATCGCTGCTTAA 59.997 43.478 0.00 0.00 41.31 1.85
1600 1975 4.320057 GCAAGCTTATCATCGCTGCTTAAT 60.320 41.667 0.00 0.00 41.31 1.40
1601 1976 5.755813 CAAGCTTATCATCGCTGCTTAATT 58.244 37.500 0.00 0.00 41.31 1.40
1602 1977 6.204359 CAAGCTTATCATCGCTGCTTAATTT 58.796 36.000 0.00 0.00 41.31 1.82
1603 1978 6.382869 AGCTTATCATCGCTGCTTAATTTT 57.617 33.333 0.00 0.00 34.69 1.82
1604 1979 7.496529 AGCTTATCATCGCTGCTTAATTTTA 57.503 32.000 0.00 0.00 34.69 1.52
1605 1980 7.930217 AGCTTATCATCGCTGCTTAATTTTAA 58.070 30.769 0.00 0.00 34.69 1.52
1606 1981 8.405531 AGCTTATCATCGCTGCTTAATTTTAAA 58.594 29.630 0.00 0.00 34.69 1.52
1607 1982 9.019764 GCTTATCATCGCTGCTTAATTTTAAAA 57.980 29.630 2.51 2.51 0.00 1.52
1651 2026 2.921834 TACTCACCTAGCCAGGACTT 57.078 50.000 4.75 0.00 45.91 3.01
1652 2027 2.031495 ACTCACCTAGCCAGGACTTT 57.969 50.000 4.75 0.00 45.91 2.66
1692 2084 5.981315 CACGTCAGAGTGTTTCTTTACCTTA 59.019 40.000 0.00 0.00 37.35 2.69
1693 2085 5.981915 ACGTCAGAGTGTTTCTTTACCTTAC 59.018 40.000 0.00 0.00 32.41 2.34
1694 2086 6.183360 ACGTCAGAGTGTTTCTTTACCTTACT 60.183 38.462 0.00 0.00 32.41 2.24
1696 2088 7.306632 CGTCAGAGTGTTTCTTTACCTTACTTG 60.307 40.741 0.00 0.00 32.41 3.16
1708 2102 9.578576 TCTTTACCTTACTTGTCTAGTTCTGTA 57.421 33.333 0.00 0.00 38.33 2.74
1743 2146 1.475034 GCATCATCAGGGCTTAACCGA 60.475 52.381 0.00 0.00 40.62 4.69
1866 2269 1.146358 GCGACATCGGAAGCAGGTAC 61.146 60.000 3.08 0.00 40.23 3.34
1901 2307 9.303537 GGATACATGACTAACTAGTTCTTTGTC 57.696 37.037 12.39 15.44 36.50 3.18
1930 2336 8.765219 ACATATATACGTTTGACAGCTGAATTC 58.235 33.333 23.35 8.43 0.00 2.17
1938 2344 3.076621 TGACAGCTGAATTCATGTCACC 58.923 45.455 28.70 13.48 45.18 4.02
1942 2348 3.079578 AGCTGAATTCATGTCACCACTG 58.920 45.455 8.96 0.00 0.00 3.66
1947 2353 4.892345 TGAATTCATGTCACCACTGGAAAA 59.108 37.500 3.38 0.00 0.00 2.29
1948 2354 5.362143 TGAATTCATGTCACCACTGGAAAAA 59.638 36.000 3.38 0.00 0.00 1.94
2019 2433 1.736645 CGGCCGAACAGACAACGAT 60.737 57.895 24.07 0.00 0.00 3.73
2175 2589 2.688666 CCTGCTCCTGCCCTGGTA 60.689 66.667 0.00 0.00 38.71 3.25
2287 2701 2.717044 CCGCAGTCCACGACCCATA 61.717 63.158 0.00 0.00 32.18 2.74
2288 2702 1.518572 CGCAGTCCACGACCCATAC 60.519 63.158 0.00 0.00 32.18 2.39
2289 2703 1.518572 GCAGTCCACGACCCATACG 60.519 63.158 0.00 0.00 32.18 3.06
2319 2733 2.126618 GTGATGTCGTCGCCGTCA 60.127 61.111 0.00 0.00 36.61 4.35
2322 2736 2.277949 ATGTCGTCGCCGTCATCG 60.278 61.111 0.00 0.00 38.19 3.84
2323 2737 2.914797 GATGTCGTCGCCGTCATCGT 62.915 60.000 10.00 0.00 44.98 3.73
2324 2738 2.914797 ATGTCGTCGCCGTCATCGTC 62.915 60.000 0.00 0.00 38.19 4.20
2325 2739 3.424859 TCGTCGCCGTCATCGTCA 61.425 61.111 0.00 0.00 35.01 4.35
2326 2740 2.277949 CGTCGCCGTCATCGTCAT 60.278 61.111 0.00 0.00 35.01 3.06
2327 2741 2.286559 CGTCGCCGTCATCGTCATC 61.287 63.158 0.00 0.00 35.01 2.92
2328 2742 2.024163 TCGCCGTCATCGTCATCG 59.976 61.111 0.00 0.00 38.55 3.84
2329 2743 3.682315 CGCCGTCATCGTCATCGC 61.682 66.667 0.00 0.00 36.96 4.58
2330 2744 2.582226 GCCGTCATCGTCATCGCA 60.582 61.111 0.00 0.00 36.96 5.10
2331 2745 2.580470 GCCGTCATCGTCATCGCAG 61.580 63.158 0.00 0.00 36.96 5.18
2332 2746 2.580470 CCGTCATCGTCATCGCAGC 61.580 63.158 0.00 0.00 36.96 5.25
2333 2747 2.580470 CGTCATCGTCATCGCAGCC 61.580 63.158 0.00 0.00 36.96 4.85
2334 2748 1.519234 GTCATCGTCATCGCAGCCA 60.519 57.895 0.00 0.00 36.96 4.75
2335 2749 1.519234 TCATCGTCATCGCAGCCAC 60.519 57.895 0.00 0.00 36.96 5.01
2336 2750 2.202932 ATCGTCATCGCAGCCACC 60.203 61.111 0.00 0.00 36.96 4.61
2337 2751 4.794439 TCGTCATCGCAGCCACCG 62.794 66.667 0.00 0.00 36.96 4.94
2457 2871 2.723124 ACGGCATGGTTGAATTTGAC 57.277 45.000 0.00 0.00 0.00 3.18
2463 2877 3.119531 GCATGGTTGAATTTGACGATCCA 60.120 43.478 0.00 0.00 0.00 3.41
2475 2889 1.086067 ACGATCCATGCGTTGCTCAG 61.086 55.000 0.00 0.00 39.18 3.35
2476 2890 1.769098 CGATCCATGCGTTGCTCAGG 61.769 60.000 0.00 0.00 0.00 3.86
2670 3085 2.879026 GACAAGGAGCGAAGGAAAAGTT 59.121 45.455 0.00 0.00 0.00 2.66
2797 3212 4.460382 ACAATTGGTAATCAGAGCCAACAG 59.540 41.667 10.83 5.23 43.93 3.16
3505 3954 2.852075 ACCACTTCCCCCGCTTCA 60.852 61.111 0.00 0.00 0.00 3.02
3540 3989 2.581354 GTCTGGCTGGATCGCTGT 59.419 61.111 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.878961 GGTTGGGCGGAATAGCTACG 60.879 60.000 0.00 0.00 37.29 3.51
11 12 0.179468 TGGTTGGGCGGAATAGCTAC 59.821 55.000 0.00 0.00 37.29 3.58
12 13 0.179468 GTGGTTGGGCGGAATAGCTA 59.821 55.000 0.00 0.00 37.29 3.32
13 14 1.077716 GTGGTTGGGCGGAATAGCT 60.078 57.895 0.00 0.00 37.29 3.32
14 15 2.119029 GGTGGTTGGGCGGAATAGC 61.119 63.158 0.00 0.00 0.00 2.97
15 16 1.453197 GGGTGGTTGGGCGGAATAG 60.453 63.158 0.00 0.00 0.00 1.73
16 17 2.232108 TGGGTGGTTGGGCGGAATA 61.232 57.895 0.00 0.00 0.00 1.75
17 18 3.585428 TGGGTGGTTGGGCGGAAT 61.585 61.111 0.00 0.00 0.00 3.01
18 19 4.589675 GTGGGTGGTTGGGCGGAA 62.590 66.667 0.00 0.00 0.00 4.30
21 22 4.885270 TGTGTGGGTGGTTGGGCG 62.885 66.667 0.00 0.00 0.00 6.13
22 23 2.912025 CTGTGTGGGTGGTTGGGC 60.912 66.667 0.00 0.00 0.00 5.36
23 24 2.063015 TAGCTGTGTGGGTGGTTGGG 62.063 60.000 0.00 0.00 0.00 4.12
24 25 0.889186 GTAGCTGTGTGGGTGGTTGG 60.889 60.000 0.00 0.00 0.00 3.77
25 26 0.179032 TGTAGCTGTGTGGGTGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
26 27 0.179029 GTGTAGCTGTGTGGGTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
27 28 1.341913 TGTGTAGCTGTGTGGGTGGT 61.342 55.000 0.00 0.00 0.00 4.16
28 29 0.179032 TTGTGTAGCTGTGTGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
29 30 1.674359 TTTGTGTAGCTGTGTGGGTG 58.326 50.000 0.00 0.00 0.00 4.61
30 31 2.229792 CATTTGTGTAGCTGTGTGGGT 58.770 47.619 0.00 0.00 0.00 4.51
31 32 1.541147 CCATTTGTGTAGCTGTGTGGG 59.459 52.381 0.00 0.00 0.00 4.61
32 33 2.229792 ACCATTTGTGTAGCTGTGTGG 58.770 47.619 0.00 0.00 0.00 4.17
33 34 3.812609 TGTACCATTTGTGTAGCTGTGTG 59.187 43.478 0.00 0.00 0.00 3.82
34 35 4.079980 TGTACCATTTGTGTAGCTGTGT 57.920 40.909 0.00 0.00 0.00 3.72
35 36 4.613622 GCTTGTACCATTTGTGTAGCTGTG 60.614 45.833 0.00 0.00 0.00 3.66
36 37 3.502211 GCTTGTACCATTTGTGTAGCTGT 59.498 43.478 0.00 0.00 0.00 4.40
37 38 3.501828 TGCTTGTACCATTTGTGTAGCTG 59.498 43.478 0.00 0.00 31.32 4.24
38 39 3.750371 TGCTTGTACCATTTGTGTAGCT 58.250 40.909 0.00 0.00 31.32 3.32
39 40 4.155826 TGATGCTTGTACCATTTGTGTAGC 59.844 41.667 0.00 0.00 0.00 3.58
40 41 5.674569 GCTGATGCTTGTACCATTTGTGTAG 60.675 44.000 0.00 0.00 36.03 2.74
41 42 4.155826 GCTGATGCTTGTACCATTTGTGTA 59.844 41.667 0.00 0.00 36.03 2.90
42 43 3.057315 GCTGATGCTTGTACCATTTGTGT 60.057 43.478 0.00 0.00 36.03 3.72
43 44 3.504863 GCTGATGCTTGTACCATTTGTG 58.495 45.455 0.00 0.00 36.03 3.33
44 45 2.493278 GGCTGATGCTTGTACCATTTGT 59.507 45.455 0.00 0.00 39.59 2.83
45 46 2.478370 CGGCTGATGCTTGTACCATTTG 60.478 50.000 0.00 0.00 39.59 2.32
46 47 1.745087 CGGCTGATGCTTGTACCATTT 59.255 47.619 0.00 0.00 39.59 2.32
47 48 1.065491 TCGGCTGATGCTTGTACCATT 60.065 47.619 0.00 0.00 39.59 3.16
48 49 0.541392 TCGGCTGATGCTTGTACCAT 59.459 50.000 0.00 0.00 39.59 3.55
49 50 0.323302 TTCGGCTGATGCTTGTACCA 59.677 50.000 0.00 0.00 39.59 3.25
50 51 1.009829 CTTCGGCTGATGCTTGTACC 58.990 55.000 0.00 0.00 39.59 3.34
51 52 0.375106 GCTTCGGCTGATGCTTGTAC 59.625 55.000 22.63 0.00 40.94 2.90
52 53 0.744414 GGCTTCGGCTGATGCTTGTA 60.744 55.000 26.99 0.00 43.03 2.41
53 54 2.042831 GGCTTCGGCTGATGCTTGT 61.043 57.895 26.99 0.00 43.03 3.16
54 55 2.796651 GGCTTCGGCTGATGCTTG 59.203 61.111 26.99 4.88 43.03 4.01
70 71 4.493747 GAAGGAGTCGGACGGCGG 62.494 72.222 13.24 0.00 0.00 6.13
71 72 4.493747 GGAAGGAGTCGGACGGCG 62.494 72.222 4.80 4.80 0.00 6.46
72 73 1.318158 TTAGGAAGGAGTCGGACGGC 61.318 60.000 1.89 0.00 0.00 5.68
73 74 0.455005 GTTAGGAAGGAGTCGGACGG 59.545 60.000 1.89 0.00 0.00 4.79
74 75 1.461559 AGTTAGGAAGGAGTCGGACG 58.538 55.000 1.89 0.00 0.00 4.79
75 76 5.591877 TGTAATAGTTAGGAAGGAGTCGGAC 59.408 44.000 0.00 0.00 0.00 4.79
76 77 5.759059 TGTAATAGTTAGGAAGGAGTCGGA 58.241 41.667 0.00 0.00 0.00 4.55
77 78 6.461110 TTGTAATAGTTAGGAAGGAGTCGG 57.539 41.667 0.00 0.00 0.00 4.79
78 79 6.924060 CCATTGTAATAGTTAGGAAGGAGTCG 59.076 42.308 0.00 0.00 0.00 4.18
79 80 8.019656 TCCATTGTAATAGTTAGGAAGGAGTC 57.980 38.462 0.00 0.00 0.00 3.36
80 81 7.844779 TCTCCATTGTAATAGTTAGGAAGGAGT 59.155 37.037 0.00 0.00 38.98 3.85
81 82 8.145122 GTCTCCATTGTAATAGTTAGGAAGGAG 58.855 40.741 0.00 0.00 39.19 3.69
82 83 7.844779 AGTCTCCATTGTAATAGTTAGGAAGGA 59.155 37.037 0.00 0.00 0.00 3.36
83 84 8.024145 AGTCTCCATTGTAATAGTTAGGAAGG 57.976 38.462 0.00 0.00 0.00 3.46
84 85 9.968870 GTAGTCTCCATTGTAATAGTTAGGAAG 57.031 37.037 0.00 0.00 0.00 3.46
85 86 9.710818 AGTAGTCTCCATTGTAATAGTTAGGAA 57.289 33.333 0.00 0.00 0.00 3.36
86 87 9.132923 CAGTAGTCTCCATTGTAATAGTTAGGA 57.867 37.037 0.00 0.00 0.00 2.94
87 88 8.361139 CCAGTAGTCTCCATTGTAATAGTTAGG 58.639 40.741 0.00 0.00 0.00 2.69
88 89 7.868415 GCCAGTAGTCTCCATTGTAATAGTTAG 59.132 40.741 0.00 0.00 0.00 2.34
89 90 7.563924 AGCCAGTAGTCTCCATTGTAATAGTTA 59.436 37.037 0.00 0.00 0.00 2.24
90 91 6.384305 AGCCAGTAGTCTCCATTGTAATAGTT 59.616 38.462 0.00 0.00 0.00 2.24
91 92 5.900123 AGCCAGTAGTCTCCATTGTAATAGT 59.100 40.000 0.00 0.00 0.00 2.12
92 93 6.412362 AGCCAGTAGTCTCCATTGTAATAG 57.588 41.667 0.00 0.00 0.00 1.73
93 94 8.492415 AATAGCCAGTAGTCTCCATTGTAATA 57.508 34.615 0.00 0.00 0.00 0.98
94 95 7.380423 AATAGCCAGTAGTCTCCATTGTAAT 57.620 36.000 0.00 0.00 0.00 1.89
95 96 6.808321 AATAGCCAGTAGTCTCCATTGTAA 57.192 37.500 0.00 0.00 0.00 2.41
96 97 6.808321 AAATAGCCAGTAGTCTCCATTGTA 57.192 37.500 0.00 0.00 0.00 2.41
97 98 5.700402 AAATAGCCAGTAGTCTCCATTGT 57.300 39.130 0.00 0.00 0.00 2.71
98 99 7.227512 CCTTTAAATAGCCAGTAGTCTCCATTG 59.772 40.741 0.00 0.00 0.00 2.82
99 100 7.127339 TCCTTTAAATAGCCAGTAGTCTCCATT 59.873 37.037 0.00 0.00 0.00 3.16
100 101 6.615726 TCCTTTAAATAGCCAGTAGTCTCCAT 59.384 38.462 0.00 0.00 0.00 3.41
101 102 5.962031 TCCTTTAAATAGCCAGTAGTCTCCA 59.038 40.000 0.00 0.00 0.00 3.86
102 103 6.324254 TCTCCTTTAAATAGCCAGTAGTCTCC 59.676 42.308 0.00 0.00 0.00 3.71
103 104 7.349412 TCTCCTTTAAATAGCCAGTAGTCTC 57.651 40.000 0.00 0.00 0.00 3.36
104 105 7.565398 TCATCTCCTTTAAATAGCCAGTAGTCT 59.435 37.037 0.00 0.00 0.00 3.24
105 106 7.654116 GTCATCTCCTTTAAATAGCCAGTAGTC 59.346 40.741 0.00 0.00 0.00 2.59
106 107 7.419172 GGTCATCTCCTTTAAATAGCCAGTAGT 60.419 40.741 0.00 0.00 0.00 2.73
107 108 6.931840 GGTCATCTCCTTTAAATAGCCAGTAG 59.068 42.308 0.00 0.00 0.00 2.57
108 109 6.462487 CGGTCATCTCCTTTAAATAGCCAGTA 60.462 42.308 0.00 0.00 0.00 2.74
109 110 5.685075 CGGTCATCTCCTTTAAATAGCCAGT 60.685 44.000 0.00 0.00 0.00 4.00
110 111 4.752101 CGGTCATCTCCTTTAAATAGCCAG 59.248 45.833 0.00 0.00 0.00 4.85
111 112 4.163458 ACGGTCATCTCCTTTAAATAGCCA 59.837 41.667 0.00 0.00 0.00 4.75
112 113 4.704965 ACGGTCATCTCCTTTAAATAGCC 58.295 43.478 0.00 0.00 0.00 3.93
113 114 7.279313 TGTTAACGGTCATCTCCTTTAAATAGC 59.721 37.037 0.26 0.00 34.56 2.97
114 115 8.601476 GTGTTAACGGTCATCTCCTTTAAATAG 58.399 37.037 0.26 0.00 34.56 1.73
115 116 8.095792 TGTGTTAACGGTCATCTCCTTTAAATA 58.904 33.333 0.26 0.00 34.56 1.40
116 117 6.938030 TGTGTTAACGGTCATCTCCTTTAAAT 59.062 34.615 0.26 0.00 34.56 1.40
117 118 6.289834 TGTGTTAACGGTCATCTCCTTTAAA 58.710 36.000 0.26 0.00 34.56 1.52
118 119 5.856156 TGTGTTAACGGTCATCTCCTTTAA 58.144 37.500 0.26 0.00 31.75 1.52
119 120 5.011329 ACTGTGTTAACGGTCATCTCCTTTA 59.989 40.000 0.26 0.00 42.50 1.85
120 121 4.202326 ACTGTGTTAACGGTCATCTCCTTT 60.202 41.667 0.26 0.00 42.50 3.11
121 122 3.323979 ACTGTGTTAACGGTCATCTCCTT 59.676 43.478 0.26 0.00 42.50 3.36
122 123 2.897969 ACTGTGTTAACGGTCATCTCCT 59.102 45.455 0.26 0.00 42.50 3.69
123 124 3.314541 ACTGTGTTAACGGTCATCTCC 57.685 47.619 0.26 0.00 42.50 3.71
124 125 5.164119 CGTTAACTGTGTTAACGGTCATCTC 60.164 44.000 31.17 8.69 45.50 2.75
125 126 4.682860 CGTTAACTGTGTTAACGGTCATCT 59.317 41.667 31.17 0.65 45.50 2.90
126 127 4.938129 CGTTAACTGTGTTAACGGTCATC 58.062 43.478 31.17 9.72 45.50 2.92
127 128 4.977741 CGTTAACTGTGTTAACGGTCAT 57.022 40.909 31.17 1.60 45.50 3.06
133 134 1.536766 GGGCCCGTTAACTGTGTTAAC 59.463 52.381 5.69 18.11 0.00 2.01
134 135 1.142465 TGGGCCCGTTAACTGTGTTAA 59.858 47.619 19.37 0.00 0.00 2.01
135 136 0.763652 TGGGCCCGTTAACTGTGTTA 59.236 50.000 19.37 0.00 0.00 2.41
136 137 0.106619 TTGGGCCCGTTAACTGTGTT 60.107 50.000 19.37 0.00 0.00 3.32
137 138 0.536460 CTTGGGCCCGTTAACTGTGT 60.536 55.000 19.37 0.00 0.00 3.72
138 139 1.862602 GCTTGGGCCCGTTAACTGTG 61.863 60.000 19.37 0.00 0.00 3.66
139 140 1.602605 GCTTGGGCCCGTTAACTGT 60.603 57.895 19.37 0.00 0.00 3.55
140 141 1.303317 AGCTTGGGCCCGTTAACTG 60.303 57.895 19.37 2.66 39.73 3.16
141 142 1.303317 CAGCTTGGGCCCGTTAACT 60.303 57.895 19.37 7.07 39.73 2.24
142 143 2.340328 CCAGCTTGGGCCCGTTAAC 61.340 63.158 19.37 4.47 39.73 2.01
143 144 1.858739 ATCCAGCTTGGGCCCGTTAA 61.859 55.000 19.37 4.85 38.32 2.01
144 145 2.265467 GATCCAGCTTGGGCCCGTTA 62.265 60.000 19.37 3.80 38.32 3.18
145 146 3.645268 GATCCAGCTTGGGCCCGTT 62.645 63.158 19.37 0.00 38.32 4.44
146 147 4.115199 GATCCAGCTTGGGCCCGT 62.115 66.667 19.37 0.00 38.32 5.28
148 149 3.797353 TCGATCCAGCTTGGGCCC 61.797 66.667 17.59 17.59 38.32 5.80
149 150 2.514824 GTCGATCCAGCTTGGGCC 60.515 66.667 0.00 0.00 38.32 5.80
150 151 2.852495 TTCGTCGATCCAGCTTGGGC 62.852 60.000 0.00 0.00 38.32 5.36
151 152 0.391130 TTTCGTCGATCCAGCTTGGG 60.391 55.000 0.00 0.00 38.32 4.12
152 153 0.721718 GTTTCGTCGATCCAGCTTGG 59.278 55.000 0.00 0.00 39.43 3.61
153 154 0.366871 CGTTTCGTCGATCCAGCTTG 59.633 55.000 0.00 0.00 0.00 4.01
154 155 1.352156 GCGTTTCGTCGATCCAGCTT 61.352 55.000 0.00 0.00 0.00 3.74
155 156 1.805945 GCGTTTCGTCGATCCAGCT 60.806 57.895 0.00 0.00 0.00 4.24
156 157 2.695646 GCGTTTCGTCGATCCAGC 59.304 61.111 0.00 0.00 0.00 4.85
157 158 2.987593 CGCGTTTCGTCGATCCAG 59.012 61.111 0.00 0.00 0.00 3.86
158 159 3.176578 GCGCGTTTCGTCGATCCA 61.177 61.111 8.43 0.00 41.07 3.41
159 160 2.879462 AGCGCGTTTCGTCGATCC 60.879 61.111 8.43 0.00 41.07 3.36
160 161 2.313374 CAGCGCGTTTCGTCGATC 59.687 61.111 8.43 0.00 41.07 3.69
161 162 3.179265 CCAGCGCGTTTCGTCGAT 61.179 61.111 8.43 1.86 41.07 3.59
173 174 3.121030 CAAAGGAGGACGCCAGCG 61.121 66.667 11.05 11.05 46.03 5.18
174 175 3.435186 GCAAAGGAGGACGCCAGC 61.435 66.667 0.00 0.00 0.00 4.85
175 176 2.747855 GGCAAAGGAGGACGCCAG 60.748 66.667 0.00 0.00 44.25 4.85
177 178 2.436824 GAGGCAAAGGAGGACGCC 60.437 66.667 0.00 0.00 45.23 5.68
178 179 1.078143 ATGAGGCAAAGGAGGACGC 60.078 57.895 0.00 0.00 0.00 5.19
179 180 0.745845 CCATGAGGCAAAGGAGGACG 60.746 60.000 0.00 0.00 0.00 4.79
180 181 0.394899 CCCATGAGGCAAAGGAGGAC 60.395 60.000 0.00 0.00 0.00 3.85
181 182 2.001803 CCCATGAGGCAAAGGAGGA 58.998 57.895 0.00 0.00 0.00 3.71
182 183 4.672251 CCCATGAGGCAAAGGAGG 57.328 61.111 0.00 0.00 0.00 4.30
192 193 4.899239 GACGAGCCGGCCCATGAG 62.899 72.222 26.15 10.82 0.00 2.90
203 204 4.554036 GATGGGCCTGGGACGAGC 62.554 72.222 4.53 0.00 0.00 5.03
204 205 2.765807 AGATGGGCCTGGGACGAG 60.766 66.667 4.53 0.00 0.00 4.18
205 206 2.764128 GAGATGGGCCTGGGACGA 60.764 66.667 4.53 0.00 0.00 4.20
206 207 2.765807 AGAGATGGGCCTGGGACG 60.766 66.667 4.53 0.00 0.00 4.79
207 208 2.801631 CGAGAGATGGGCCTGGGAC 61.802 68.421 4.53 0.00 0.00 4.46
208 209 2.444706 CGAGAGATGGGCCTGGGA 60.445 66.667 4.53 0.00 0.00 4.37
209 210 4.247380 GCGAGAGATGGGCCTGGG 62.247 72.222 4.53 0.00 0.00 4.45
210 211 2.335092 AATGCGAGAGATGGGCCTGG 62.335 60.000 4.53 0.00 0.00 4.45
211 212 0.465097 AAATGCGAGAGATGGGCCTG 60.465 55.000 4.53 0.00 0.00 4.85
212 213 0.465097 CAAATGCGAGAGATGGGCCT 60.465 55.000 4.53 0.00 0.00 5.19
213 214 0.464373 TCAAATGCGAGAGATGGGCC 60.464 55.000 0.00 0.00 0.00 5.80
214 215 0.659957 GTCAAATGCGAGAGATGGGC 59.340 55.000 0.00 0.00 0.00 5.36
215 216 2.158986 AGAGTCAAATGCGAGAGATGGG 60.159 50.000 0.00 0.00 0.00 4.00
216 217 3.176552 AGAGTCAAATGCGAGAGATGG 57.823 47.619 0.00 0.00 0.00 3.51
217 218 3.555139 GGAAGAGTCAAATGCGAGAGATG 59.445 47.826 0.00 0.00 0.00 2.90
218 219 3.736433 CGGAAGAGTCAAATGCGAGAGAT 60.736 47.826 0.00 0.00 0.00 2.75
219 220 2.416027 CGGAAGAGTCAAATGCGAGAGA 60.416 50.000 0.00 0.00 0.00 3.10
220 221 1.923204 CGGAAGAGTCAAATGCGAGAG 59.077 52.381 0.00 0.00 0.00 3.20
221 222 1.996292 CGGAAGAGTCAAATGCGAGA 58.004 50.000 0.00 0.00 0.00 4.04
222 223 0.371645 GCGGAAGAGTCAAATGCGAG 59.628 55.000 8.30 0.00 0.00 5.03
223 224 1.351430 CGCGGAAGAGTCAAATGCGA 61.351 55.000 12.57 0.00 46.29 5.10
224 225 1.059369 CGCGGAAGAGTCAAATGCG 59.941 57.895 0.00 5.65 38.04 4.73
225 226 1.226128 GCGCGGAAGAGTCAAATGC 60.226 57.895 8.83 0.00 0.00 3.56
226 227 1.425428 GGCGCGGAAGAGTCAAATG 59.575 57.895 8.83 0.00 34.87 2.32
227 228 1.745489 GGGCGCGGAAGAGTCAAAT 60.745 57.895 8.83 0.00 37.19 2.32
228 229 2.358247 GGGCGCGGAAGAGTCAAA 60.358 61.111 8.83 0.00 37.19 2.69
229 230 3.296709 GAGGGCGCGGAAGAGTCAA 62.297 63.158 8.83 0.00 37.19 3.18
230 231 3.760035 GAGGGCGCGGAAGAGTCA 61.760 66.667 8.83 0.00 37.19 3.41
231 232 4.856607 CGAGGGCGCGGAAGAGTC 62.857 72.222 8.83 0.00 33.58 3.36
233 234 4.856607 GACGAGGGCGCGGAAGAG 62.857 72.222 8.83 0.00 42.48 2.85
253 254 1.004918 ACTGTAGCTGTTCCGGCAC 60.005 57.895 0.00 0.00 38.37 5.01
254 255 1.005037 CACTGTAGCTGTTCCGGCA 60.005 57.895 0.00 0.00 38.37 5.69
255 256 2.391389 GCACTGTAGCTGTTCCGGC 61.391 63.158 0.00 0.00 35.73 6.13
256 257 1.293498 AGCACTGTAGCTGTTCCGG 59.707 57.895 0.00 0.00 44.66 5.14
257 258 4.996976 AGCACTGTAGCTGTTCCG 57.003 55.556 0.00 0.00 44.66 4.30
269 270 1.895707 GACAACAGGCAGCAGCACT 60.896 57.895 2.65 0.00 44.61 4.40
270 271 2.641559 GACAACAGGCAGCAGCAC 59.358 61.111 2.65 0.00 44.61 4.40
271 272 2.974148 CGACAACAGGCAGCAGCA 60.974 61.111 2.65 0.00 44.61 4.41
272 273 3.730761 CCGACAACAGGCAGCAGC 61.731 66.667 0.00 0.00 41.10 5.25
273 274 3.052082 CCCGACAACAGGCAGCAG 61.052 66.667 0.00 0.00 0.00 4.24
280 281 4.680237 TCAGCGGCCCGACAACAG 62.680 66.667 7.68 0.00 0.00 3.16
281 282 4.980805 GTCAGCGGCCCGACAACA 62.981 66.667 7.68 0.00 32.24 3.33
282 283 4.980805 TGTCAGCGGCCCGACAAC 62.981 66.667 17.51 0.62 39.14 3.32
283 284 4.680237 CTGTCAGCGGCCCGACAA 62.680 66.667 19.50 7.73 41.39 3.18
285 286 2.775032 TTTACTGTCAGCGGCCCGAC 62.775 60.000 7.68 11.97 0.00 4.79
286 287 2.501223 CTTTACTGTCAGCGGCCCGA 62.501 60.000 7.68 0.00 0.00 5.14
287 288 2.047655 TTTACTGTCAGCGGCCCG 60.048 61.111 0.00 0.00 0.00 6.13
288 289 2.399356 GCTTTACTGTCAGCGGCCC 61.399 63.158 0.00 0.00 0.00 5.80
289 290 2.399356 GGCTTTACTGTCAGCGGCC 61.399 63.158 0.00 5.11 36.85 6.13
290 291 1.362406 GAGGCTTTACTGTCAGCGGC 61.362 60.000 0.00 0.00 36.85 6.53
291 292 0.247736 AGAGGCTTTACTGTCAGCGG 59.752 55.000 0.00 0.00 36.85 5.52
292 293 1.067565 TGAGAGGCTTTACTGTCAGCG 60.068 52.381 0.00 0.00 36.04 5.18
293 294 2.751166 TGAGAGGCTTTACTGTCAGC 57.249 50.000 0.00 3.81 36.04 4.26
294 295 2.935201 GCATGAGAGGCTTTACTGTCAG 59.065 50.000 0.00 0.00 42.95 3.51
295 296 2.302733 TGCATGAGAGGCTTTACTGTCA 59.697 45.455 0.00 0.00 43.69 3.58
296 297 2.675348 GTGCATGAGAGGCTTTACTGTC 59.325 50.000 0.00 0.00 0.00 3.51
297 298 2.038952 TGTGCATGAGAGGCTTTACTGT 59.961 45.455 0.00 0.00 0.00 3.55
298 299 2.703416 TGTGCATGAGAGGCTTTACTG 58.297 47.619 0.00 0.00 0.00 2.74
299 300 3.054875 TCATGTGCATGAGAGGCTTTACT 60.055 43.478 10.48 0.00 42.42 2.24
468 469 1.534163 GTGAGACAAACCTAAACCGCC 59.466 52.381 0.00 0.00 0.00 6.13
548 549 1.944024 TGGTGTTGCTAGTTGTTTCCG 59.056 47.619 0.00 0.00 0.00 4.30
558 559 4.081142 ACATACATGTAGCTGGTGTTGCTA 60.081 41.667 11.91 0.00 39.68 3.49
599 600 5.069648 CCACTAATCTCATGACCTAGCTTGA 59.930 44.000 0.00 0.00 0.00 3.02
621 653 8.737175 AGACGATAATCTATTTCGTTATAGCCA 58.263 33.333 11.44 0.00 45.30 4.75
627 659 9.060347 ACTACCAGACGATAATCTATTTCGTTA 57.940 33.333 11.44 3.83 45.30 3.18
777 839 3.838244 AAGTAGTGACAGTTCTTGCCA 57.162 42.857 1.69 0.00 0.00 4.92
832 894 9.911788 ACCACTATTCTCTTTTTGTATGATGAT 57.088 29.630 0.00 0.00 0.00 2.45
1001 1351 0.758734 ATATAGAGCAGCAACGGCCA 59.241 50.000 2.24 0.00 42.56 5.36
1024 1378 0.682209 CTCCCGACGGTTAGGAAGGA 60.682 60.000 13.94 0.00 0.00 3.36
1071 1425 4.803588 GCAGATCTGGGAAGAAGATGGATC 60.804 50.000 23.89 0.00 34.50 3.36
1072 1426 3.072768 GCAGATCTGGGAAGAAGATGGAT 59.927 47.826 23.89 0.00 34.50 3.41
1076 1430 4.412858 AGAATGCAGATCTGGGAAGAAGAT 59.587 41.667 23.89 0.00 37.09 2.40
1088 1442 2.612471 CCGATGAGGGAGAATGCAGATC 60.612 54.545 0.00 0.00 35.97 2.75
1108 1462 3.365265 CAACAGTTCAGGCCGCCC 61.365 66.667 5.55 0.00 0.00 6.13
1118 1472 2.436417 CCATTGATCGGTCCAACAGTT 58.564 47.619 0.00 0.00 0.00 3.16
1119 1473 1.340017 CCCATTGATCGGTCCAACAGT 60.340 52.381 0.00 0.00 0.00 3.55
1120 1474 1.382522 CCCATTGATCGGTCCAACAG 58.617 55.000 0.00 0.00 0.00 3.16
1121 1475 0.034574 CCCCATTGATCGGTCCAACA 60.035 55.000 0.00 0.00 0.00 3.33
1122 1476 0.254747 TCCCCATTGATCGGTCCAAC 59.745 55.000 0.00 0.00 0.00 3.77
1123 1477 0.546122 CTCCCCATTGATCGGTCCAA 59.454 55.000 0.00 0.00 0.00 3.53
1124 1478 1.344953 CCTCCCCATTGATCGGTCCA 61.345 60.000 0.00 0.00 0.00 4.02
1125 1479 1.345715 ACCTCCCCATTGATCGGTCC 61.346 60.000 0.00 0.00 0.00 4.46
1126 1480 0.106894 GACCTCCCCATTGATCGGTC 59.893 60.000 0.00 0.00 34.79 4.79
1129 1483 0.394565 GGAGACCTCCCCATTGATCG 59.605 60.000 4.72 0.00 43.94 3.69
1524 1885 0.995024 ACCAACCAGCCTTGCTAGAT 59.005 50.000 0.00 0.00 36.40 1.98
1617 1992 9.101655 GCTAGGTGAGTAAATTAATTACGGAAA 57.898 33.333 0.01 0.00 46.97 3.13
1618 1993 7.712205 GGCTAGGTGAGTAAATTAATTACGGAA 59.288 37.037 0.01 0.00 46.97 4.30
1619 1994 7.147689 TGGCTAGGTGAGTAAATTAATTACGGA 60.148 37.037 0.01 0.00 46.97 4.69
1620 1995 6.987992 TGGCTAGGTGAGTAAATTAATTACGG 59.012 38.462 0.01 0.00 46.97 4.02
1621 1996 7.170998 CCTGGCTAGGTGAGTAAATTAATTACG 59.829 40.741 8.21 0.00 42.53 3.18
1651 2026 1.227292 TGTGCCACACGCGAACTAA 60.227 52.632 15.93 0.00 42.08 2.24
1652 2027 1.952133 GTGTGCCACACGCGAACTA 60.952 57.895 15.93 0.00 39.53 2.24
1692 2084 8.410141 GCAGATTAGATACAGAACTAGACAAGT 58.590 37.037 0.00 0.00 41.49 3.16
1693 2085 8.409371 TGCAGATTAGATACAGAACTAGACAAG 58.591 37.037 0.00 0.00 0.00 3.16
1694 2086 8.293699 TGCAGATTAGATACAGAACTAGACAA 57.706 34.615 0.00 0.00 0.00 3.18
1743 2146 1.221840 CCGGCAGCTCTTACCACAT 59.778 57.895 0.00 0.00 0.00 3.21
1901 2307 6.416750 TCAGCTGTCAAACGTATATATGTTCG 59.583 38.462 18.43 9.66 34.53 3.95
1947 2353 5.716094 GTTACAAACCAAACCACAGAGTTT 58.284 37.500 0.00 0.00 40.57 2.66
1948 2354 5.319140 GTTACAAACCAAACCACAGAGTT 57.681 39.130 0.00 0.00 0.00 3.01
2019 2433 2.639065 GTGTTCCAGTGGTTCTTGACA 58.361 47.619 9.54 3.48 0.00 3.58
2161 2575 0.548510 AGATTTACCAGGGCAGGAGC 59.451 55.000 1.94 0.00 41.10 4.70
2166 2580 0.174845 CGTCGAGATTTACCAGGGCA 59.825 55.000 0.00 0.00 0.00 5.36
2175 2589 3.718210 GAGGGCCGCGTCGAGATTT 62.718 63.158 4.92 0.00 0.00 2.17
2225 2639 0.179134 GTACAGCTGCTCCGATTCGT 60.179 55.000 15.27 0.00 0.00 3.85
2285 2699 2.443390 CCTCCCCGGTGGACGTAT 60.443 66.667 7.51 0.00 38.61 3.06
2319 2733 2.202932 GGTGGCTGCGATGACGAT 60.203 61.111 0.00 0.00 42.66 3.73
2322 2736 2.325082 AAACGGTGGCTGCGATGAC 61.325 57.895 0.00 0.00 0.00 3.06
2323 2737 2.031919 AAACGGTGGCTGCGATGA 59.968 55.556 0.00 0.00 0.00 2.92
2324 2738 2.176546 CAAACGGTGGCTGCGATG 59.823 61.111 0.00 0.00 0.00 3.84
2325 2739 3.055719 CCAAACGGTGGCTGCGAT 61.056 61.111 0.00 0.00 41.72 4.58
2333 2747 1.841663 CGGACTTGCTCCAAACGGTG 61.842 60.000 0.00 0.00 39.39 4.94
2334 2748 1.597027 CGGACTTGCTCCAAACGGT 60.597 57.895 0.00 0.00 39.39 4.83
2335 2749 1.301401 TCGGACTTGCTCCAAACGG 60.301 57.895 0.00 0.00 39.39 4.44
2336 2750 1.566018 GGTCGGACTTGCTCCAAACG 61.566 60.000 8.23 0.00 39.39 3.60
2337 2751 1.566018 CGGTCGGACTTGCTCCAAAC 61.566 60.000 8.23 0.00 39.39 2.93
2344 2758 0.456312 CTACTGACGGTCGGACTTGC 60.456 60.000 23.15 0.00 0.00 4.01
2357 2771 0.605319 CCCCGCTGCAAAACTACTGA 60.605 55.000 0.00 0.00 0.00 3.41
2457 2871 1.640069 CTGAGCAACGCATGGATCG 59.360 57.895 0.00 0.00 0.00 3.69
2463 2877 1.878775 GAAAGCCTGAGCAACGCAT 59.121 52.632 0.00 0.00 43.56 4.73
2670 3085 8.094284 TGGAGAAGGAGATGAGAATAATTCAA 57.906 34.615 0.00 0.00 0.00 2.69
3540 3989 5.644206 CCTATACAGCTCGAAGTATGCTAGA 59.356 44.000 12.52 0.00 35.05 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.