Multiple sequence alignment - TraesCS3B01G320400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G320400 chr3B 100.000 3702 0 0 1 3702 519402994 519399293 0.000000e+00 6837.0
1 TraesCS3B01G320400 chr3B 96.941 523 15 1 1 522 732891734 732891212 0.000000e+00 876.0
2 TraesCS3B01G320400 chr3B 97.099 517 14 1 1 516 719807013 719807529 0.000000e+00 870.0
3 TraesCS3B01G320400 chr3B 91.667 60 3 2 2905 2964 561696198 561696255 8.520000e-12 82.4
4 TraesCS3B01G320400 chr3D 91.888 2256 114 20 597 2798 395041531 395039291 0.000000e+00 3088.0
5 TraesCS3B01G320400 chr3D 92.124 711 37 10 2973 3676 395038623 395037925 0.000000e+00 985.0
6 TraesCS3B01G320400 chr3D 88.000 225 17 4 2515 2733 395038966 395038746 1.320000e-64 257.0
7 TraesCS3B01G320400 chr3D 95.484 155 6 1 2985 3139 395039121 395038968 2.860000e-61 246.0
8 TraesCS3B01G320400 chr3D 94.017 117 6 1 2799 2915 87400409 87400524 3.800000e-40 176.0
9 TraesCS3B01G320400 chr3D 91.870 123 10 0 2793 2915 481706728 481706606 4.920000e-39 172.0
10 TraesCS3B01G320400 chr3D 93.162 117 7 1 2799 2915 477626112 477625997 1.770000e-38 171.0
11 TraesCS3B01G320400 chr3D 98.039 51 1 0 2914 2964 520444574 520444624 5.090000e-14 89.8
12 TraesCS3B01G320400 chr3D 98.000 50 1 0 2915 2964 274728371 274728322 1.830000e-13 87.9
13 TraesCS3B01G320400 chr3A 91.111 2295 116 33 557 2798 514496102 514493843 0.000000e+00 3027.0
14 TraesCS3B01G320400 chr3A 93.191 705 31 10 2973 3676 514493827 514493139 0.000000e+00 1020.0
15 TraesCS3B01G320400 chr3A 81.331 616 92 15 1270 1879 675627352 675626754 2.590000e-131 479.0
16 TraesCS3B01G320400 chr3A 79.870 616 101 15 1270 1879 675678252 675677654 2.640000e-116 429.0
17 TraesCS3B01G320400 chr3A 85.625 160 23 0 1249 1408 675627506 675627347 6.360000e-38 169.0
18 TraesCS3B01G320400 chr2B 97.297 518 12 2 1 516 58423157 58423674 0.000000e+00 878.0
19 TraesCS3B01G320400 chr2B 96.941 523 15 1 1 522 147415144 147414622 0.000000e+00 876.0
20 TraesCS3B01G320400 chr2B 93.388 121 7 1 2795 2915 234630810 234630691 1.060000e-40 178.0
21 TraesCS3B01G320400 chr2B 100.000 49 0 0 2916 2964 526839158 526839206 1.420000e-14 91.6
22 TraesCS3B01G320400 chr1B 97.292 517 13 1 1 516 661739602 661739086 0.000000e+00 876.0
23 TraesCS3B01G320400 chr1B 97.099 517 14 1 1 516 74861812 74862328 0.000000e+00 870.0
24 TraesCS3B01G320400 chr1B 96.905 517 15 1 1 516 108339263 108339779 0.000000e+00 865.0
25 TraesCS3B01G320400 chr1B 98.039 51 1 0 2914 2964 610008868 610008918 5.090000e-14 89.8
26 TraesCS3B01G320400 chr6B 97.099 517 14 1 1 516 45613394 45613910 0.000000e+00 870.0
27 TraesCS3B01G320400 chr4B 96.750 523 16 1 1 522 639160736 639160214 0.000000e+00 870.0
28 TraesCS3B01G320400 chr4B 98.000 50 1 0 2915 2964 73262701 73262750 1.830000e-13 87.9
29 TraesCS3B01G320400 chr4D 81.788 604 91 9 1274 1873 423250341 423249753 4.300000e-134 488.0
30 TraesCS3B01G320400 chr4D 87.349 166 21 0 1243 1408 423250504 423250339 1.360000e-44 191.0
31 TraesCS3B01G320400 chr4D 98.000 50 1 0 2915 2964 18969636 18969587 1.830000e-13 87.9
32 TraesCS3B01G320400 chr7D 83.475 236 36 2 2152 2386 70130424 70130191 2.240000e-52 217.0
33 TraesCS3B01G320400 chr7D 93.277 119 8 0 2797 2915 65754217 65754099 3.800000e-40 176.0
34 TraesCS3B01G320400 chr7D 92.623 122 7 2 2795 2915 78321462 78321342 1.370000e-39 174.0
35 TraesCS3B01G320400 chr2D 83.051 236 37 2 2152 2386 570405877 570406110 1.040000e-50 211.0
36 TraesCS3B01G320400 chr2D 88.387 155 18 0 1246 1400 595937977 595937823 1.760000e-43 187.0
37 TraesCS3B01G320400 chr2D 93.913 115 6 1 2801 2915 619871532 619871419 4.920000e-39 172.0
38 TraesCS3B01G320400 chr2D 91.870 123 8 2 2795 2915 79527845 79527967 1.770000e-38 171.0
39 TraesCS3B01G320400 chr2D 98.000 50 1 0 2915 2964 463883584 463883633 1.830000e-13 87.9
40 TraesCS3B01G320400 chr2D 92.157 51 4 0 1979 2029 570405826 570405876 5.130000e-09 73.1
41 TraesCS3B01G320400 chr1D 87.425 167 18 3 1243 1408 427643823 427643987 4.880000e-44 189.0
42 TraesCS3B01G320400 chr1D 86.022 93 13 0 2294 2386 428219177 428219269 2.350000e-17 100.0
43 TraesCS3B01G320400 chr5D 86.709 158 21 0 1246 1403 218807725 218807568 3.800000e-40 176.0
44 TraesCS3B01G320400 chr5B 92.437 119 8 1 2797 2915 538318704 538318587 6.360000e-38 169.0
45 TraesCS3B01G320400 chr7A 85.806 155 22 0 1246 1400 15680588 15680742 8.230000e-37 165.0
46 TraesCS3B01G320400 chrUn 98.000 50 1 0 2915 2964 86702375 86702326 1.830000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G320400 chr3B 519399293 519402994 3701 True 6837.0 6837 100.0000 1 3702 1 chr3B.!!$R1 3701
1 TraesCS3B01G320400 chr3B 732891212 732891734 522 True 876.0 876 96.9410 1 522 1 chr3B.!!$R2 521
2 TraesCS3B01G320400 chr3B 719807013 719807529 516 False 870.0 870 97.0990 1 516 1 chr3B.!!$F2 515
3 TraesCS3B01G320400 chr3D 395037925 395041531 3606 True 1144.0 3088 91.8740 597 3676 4 chr3D.!!$R4 3079
4 TraesCS3B01G320400 chr3A 514493139 514496102 2963 True 2023.5 3027 92.1510 557 3676 2 chr3A.!!$R2 3119
5 TraesCS3B01G320400 chr3A 675677654 675678252 598 True 429.0 429 79.8700 1270 1879 1 chr3A.!!$R1 609
6 TraesCS3B01G320400 chr3A 675626754 675627506 752 True 324.0 479 83.4780 1249 1879 2 chr3A.!!$R3 630
7 TraesCS3B01G320400 chr2B 58423157 58423674 517 False 878.0 878 97.2970 1 516 1 chr2B.!!$F1 515
8 TraesCS3B01G320400 chr2B 147414622 147415144 522 True 876.0 876 96.9410 1 522 1 chr2B.!!$R1 521
9 TraesCS3B01G320400 chr1B 661739086 661739602 516 True 876.0 876 97.2920 1 516 1 chr1B.!!$R1 515
10 TraesCS3B01G320400 chr1B 74861812 74862328 516 False 870.0 870 97.0990 1 516 1 chr1B.!!$F1 515
11 TraesCS3B01G320400 chr1B 108339263 108339779 516 False 865.0 865 96.9050 1 516 1 chr1B.!!$F2 515
12 TraesCS3B01G320400 chr6B 45613394 45613910 516 False 870.0 870 97.0990 1 516 1 chr6B.!!$F1 515
13 TraesCS3B01G320400 chr4B 639160214 639160736 522 True 870.0 870 96.7500 1 522 1 chr4B.!!$R1 521
14 TraesCS3B01G320400 chr4D 423249753 423250504 751 True 339.5 488 84.5685 1243 1873 2 chr4D.!!$R2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 550 0.035152 AGGACGATTTGCTGATGCCA 60.035 50.0 0.0 0.0 38.71 4.92 F
1970 2279 0.034670 GATCTTGGCTGCTCAGGGTT 60.035 55.0 0.0 0.0 0.00 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2639 0.175760 TCGTATGGCTTGAGGTGCTC 59.824 55.0 0.00 0.00 0.0 4.26 R
2948 3288 0.103208 GCATAGACCAGGTCTCACGG 59.897 60.0 26.42 14.21 42.4 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
471 473 2.188469 GCTCCGCCGGAAACCATA 59.812 61.111 7.50 0.00 0.00 2.74
485 487 3.469008 AACCATAATGAAGGCGATCGA 57.531 42.857 21.57 0.00 0.00 3.59
527 529 3.772060 AAAATCGCTCAGCCAGAATTC 57.228 42.857 0.00 0.00 0.00 2.17
528 530 2.408271 AATCGCTCAGCCAGAATTCA 57.592 45.000 8.44 0.00 0.00 2.57
529 531 2.408271 ATCGCTCAGCCAGAATTCAA 57.592 45.000 8.44 0.00 0.00 2.69
530 532 1.730501 TCGCTCAGCCAGAATTCAAG 58.269 50.000 8.44 0.00 0.00 3.02
531 533 0.731417 CGCTCAGCCAGAATTCAAGG 59.269 55.000 8.44 10.21 0.00 3.61
532 534 1.676916 CGCTCAGCCAGAATTCAAGGA 60.677 52.381 18.12 3.82 0.00 3.36
533 535 1.742268 GCTCAGCCAGAATTCAAGGAC 59.258 52.381 18.12 10.64 0.00 3.85
534 536 2.005451 CTCAGCCAGAATTCAAGGACG 58.995 52.381 18.12 9.42 0.00 4.79
535 537 1.623311 TCAGCCAGAATTCAAGGACGA 59.377 47.619 18.12 11.17 0.00 4.20
536 538 2.237143 TCAGCCAGAATTCAAGGACGAT 59.763 45.455 18.12 1.42 0.00 3.73
537 539 3.012518 CAGCCAGAATTCAAGGACGATT 58.987 45.455 18.12 0.00 0.00 3.34
538 540 3.441572 CAGCCAGAATTCAAGGACGATTT 59.558 43.478 18.12 0.00 0.00 2.17
539 541 3.441572 AGCCAGAATTCAAGGACGATTTG 59.558 43.478 18.12 0.03 0.00 2.32
540 542 3.762779 CCAGAATTCAAGGACGATTTGC 58.237 45.455 8.44 0.00 0.00 3.68
541 543 3.441572 CCAGAATTCAAGGACGATTTGCT 59.558 43.478 8.44 0.00 0.00 3.91
542 544 4.409570 CAGAATTCAAGGACGATTTGCTG 58.590 43.478 8.44 0.00 0.00 4.41
543 545 4.154737 CAGAATTCAAGGACGATTTGCTGA 59.845 41.667 8.44 0.00 0.00 4.26
544 546 4.946157 AGAATTCAAGGACGATTTGCTGAT 59.054 37.500 8.44 0.00 0.00 2.90
545 547 4.627611 ATTCAAGGACGATTTGCTGATG 57.372 40.909 0.00 0.00 0.00 3.07
546 548 1.739466 TCAAGGACGATTTGCTGATGC 59.261 47.619 0.00 0.00 40.20 3.91
547 549 1.098050 AAGGACGATTTGCTGATGCC 58.902 50.000 0.00 0.00 38.71 4.40
548 550 0.035152 AGGACGATTTGCTGATGCCA 60.035 50.000 0.00 0.00 38.71 4.92
549 551 0.810648 GGACGATTTGCTGATGCCAA 59.189 50.000 0.00 0.00 38.71 4.52
550 552 1.468054 GGACGATTTGCTGATGCCAAC 60.468 52.381 0.00 0.00 38.71 3.77
551 553 1.199789 GACGATTTGCTGATGCCAACA 59.800 47.619 0.00 0.00 38.71 3.33
552 554 1.820519 ACGATTTGCTGATGCCAACAT 59.179 42.857 0.00 0.00 39.98 2.71
553 555 2.231964 ACGATTTGCTGATGCCAACATT 59.768 40.909 0.00 0.00 36.35 2.71
554 556 2.601314 CGATTTGCTGATGCCAACATTG 59.399 45.455 0.00 0.00 36.35 2.82
555 557 3.592059 GATTTGCTGATGCCAACATTGT 58.408 40.909 0.00 0.00 36.35 2.71
556 558 3.472283 TTTGCTGATGCCAACATTGTT 57.528 38.095 0.00 0.00 36.35 2.83
557 559 3.472283 TTGCTGATGCCAACATTGTTT 57.528 38.095 0.00 0.00 36.35 2.83
558 560 3.029320 TGCTGATGCCAACATTGTTTC 57.971 42.857 0.00 0.00 36.35 2.78
559 561 2.288948 TGCTGATGCCAACATTGTTTCC 60.289 45.455 0.00 0.00 36.35 3.13
560 562 2.598589 CTGATGCCAACATTGTTTCCG 58.401 47.619 0.00 0.00 36.35 4.30
568 570 3.242936 CCAACATTGTTTCCGAAGTTCGT 60.243 43.478 22.87 0.43 38.40 3.85
571 573 3.495753 ACATTGTTTCCGAAGTTCGTACC 59.504 43.478 22.87 9.06 38.40 3.34
572 574 2.886862 TGTTTCCGAAGTTCGTACCA 57.113 45.000 22.87 11.35 38.40 3.25
593 595 4.407818 CAGAGTCATCGACAGAGTGTTAC 58.592 47.826 2.04 0.00 34.60 2.50
612 616 6.695713 GTGTTACAACCATGGAGAAAAAGTTC 59.304 38.462 21.47 0.00 0.00 3.01
627 631 9.620259 GAGAAAAAGTTCCATGATAAGGTAGAT 57.380 33.333 0.00 0.00 33.92 1.98
688 692 2.035449 TCTGTTCTTCATTCACGTCGGT 59.965 45.455 0.00 0.00 0.00 4.69
724 728 0.039527 ATTCCGTTTTGTTGCTCGCC 60.040 50.000 0.00 0.00 0.00 5.54
810 814 8.925700 CATACTTTTATTGTTCCCTTTTCTTGC 58.074 33.333 0.00 0.00 0.00 4.01
889 894 4.127171 CAAGGTGTCCCCGAATGTATTAG 58.873 47.826 0.00 0.00 38.74 1.73
915 920 1.308998 AGAATGGAATAAAGGCGCGG 58.691 50.000 8.83 0.00 0.00 6.46
916 921 0.310854 GAATGGAATAAAGGCGCGGG 59.689 55.000 8.83 0.00 0.00 6.13
917 922 1.106944 AATGGAATAAAGGCGCGGGG 61.107 55.000 8.83 0.00 0.00 5.73
918 923 3.592814 GGAATAAAGGCGCGGGGC 61.593 66.667 18.87 18.87 42.51 5.80
946 951 3.399330 CCGCAAAGGAGTGAGAAAGTTA 58.601 45.455 0.00 0.00 45.00 2.24
966 971 8.617290 AAGTTACAGAAAGATTTATTCCGTGT 57.383 30.769 0.00 0.00 0.00 4.49
1052 1057 1.526575 GCAGCCAGCTTTGCTACCAA 61.527 55.000 7.17 0.00 36.40 3.67
1053 1058 0.524862 CAGCCAGCTTTGCTACCAAG 59.475 55.000 7.17 0.00 36.40 3.61
1054 1059 0.610232 AGCCAGCTTTGCTACCAAGG 60.610 55.000 5.71 0.00 36.40 3.61
1057 1062 4.095590 GCTTTGCTACCAAGGCCA 57.904 55.556 5.01 0.00 45.28 5.36
1062 1087 3.132824 GCTTTGCTACCAAGGCCATAATT 59.867 43.478 5.01 0.00 45.28 1.40
1125 1154 1.862147 CCATGTCGTCGTCGTCGTC 60.862 63.158 11.41 6.94 38.33 4.20
1126 1155 2.095282 ATGTCGTCGTCGTCGTCG 59.905 61.111 14.18 14.18 46.06 5.12
1127 1156 2.661566 ATGTCGTCGTCGTCGTCGT 61.662 57.895 18.44 5.06 45.27 4.34
1372 1401 1.472878 CTGCACTACCTCTTCACGCTA 59.527 52.381 0.00 0.00 0.00 4.26
1402 1563 2.797278 CGGCGGGCTCCTCAACTAT 61.797 63.158 0.00 0.00 0.00 2.12
1441 1728 4.626081 ACGCTGCTGCCGTCCTTT 62.626 61.111 10.24 0.00 35.36 3.11
1664 1960 2.815308 CCTACGCCAGCCAGGTAG 59.185 66.667 0.00 0.00 40.61 3.18
1678 1974 0.624785 AGGTAGGTACTCCGCTCTGT 59.375 55.000 0.00 0.00 41.75 3.41
1722 2026 1.377725 AAGGCCACCGCTCTGAATG 60.378 57.895 5.01 0.00 34.44 2.67
1890 2194 8.030106 CCTCAAGAGGTAGTAAAACTCAACTAG 58.970 40.741 7.98 0.00 43.61 2.57
1891 2195 8.474710 TCAAGAGGTAGTAAAACTCAACTAGT 57.525 34.615 0.00 0.00 41.49 2.57
1920 2224 4.799564 TTTTCCTGCTTGTGTGAAGTTT 57.200 36.364 0.00 0.00 0.00 2.66
1935 2239 5.300034 TGTGAAGTTTCTGCTTGTTCATCAT 59.700 36.000 0.00 0.00 30.27 2.45
1939 2243 4.217118 AGTTTCTGCTTGTTCATCATCCAC 59.783 41.667 0.00 0.00 0.00 4.02
1944 2248 3.692593 TGCTTGTTCATCATCCACTCATG 59.307 43.478 0.00 0.00 0.00 3.07
1959 2268 4.118410 CACTCATGACTACTGATCTTGGC 58.882 47.826 0.00 0.00 0.00 4.52
1970 2279 0.034670 GATCTTGGCTGCTCAGGGTT 60.035 55.000 0.00 0.00 0.00 4.11
1977 2286 0.905357 GCTGCTCAGGGTTAGGAAGA 59.095 55.000 0.00 0.00 0.00 2.87
2141 2450 0.733150 TCGACGCCATCAGTGAGTAG 59.267 55.000 0.00 0.00 0.00 2.57
2143 2452 1.795525 CGACGCCATCAGTGAGTAGTG 60.796 57.143 0.00 0.00 0.00 2.74
2144 2453 0.108615 ACGCCATCAGTGAGTAGTGC 60.109 55.000 0.00 0.00 0.00 4.40
2161 2471 2.993471 GCATGCCCTGGAAACACCG 61.993 63.158 6.36 0.00 42.61 4.94
2171 2481 1.070275 GAAACACCGACGGGACCTT 59.930 57.895 20.00 5.66 36.97 3.50
2188 2499 1.135803 CCTTGCCGTAACGACCAAATG 60.136 52.381 0.00 0.00 0.00 2.32
2193 2504 3.562973 TGCCGTAACGACCAAATGTTTTA 59.437 39.130 0.00 0.00 0.00 1.52
2243 2554 6.053632 TGTGTGACAGATAAAGTGATGGAT 57.946 37.500 0.00 0.00 0.00 3.41
2249 2560 3.496130 CAGATAAAGTGATGGATGCGGTC 59.504 47.826 0.00 0.00 0.00 4.79
2325 2639 4.692625 CAGTGTCCAAGAGGTAAGAACATG 59.307 45.833 0.00 0.00 35.89 3.21
2371 2686 5.105997 CCCATTCTCTGTTGGAAAATCAGAC 60.106 44.000 0.00 0.00 34.81 3.51
2518 2833 1.447140 GATACGCAAGGCCGTCACA 60.447 57.895 0.00 0.00 42.20 3.58
2586 2901 0.832135 AGAAACTGAGGCCGACTCCA 60.832 55.000 0.00 0.00 46.01 3.86
2590 2905 3.633094 CTGAGGCCGACTCCACACG 62.633 68.421 0.00 0.00 46.01 4.49
2623 2938 1.202222 CCGTACCAACAGGTAGTAGCG 60.202 57.143 0.00 0.00 38.53 4.26
2694 3018 8.887036 CATGTAATGCTACTCCACAAGTTATA 57.113 34.615 0.00 0.00 37.62 0.98
2708 3032 9.104965 TCCACAAGTTATACAGTGTAATAATGC 57.895 33.333 7.16 0.00 0.00 3.56
2718 3042 7.921786 ACAGTGTAATAATGCTTCTGCTTTA 57.078 32.000 0.00 0.00 41.10 1.85
2764 3104 5.751680 ACCAATGCGAGAAATCATAAATCG 58.248 37.500 0.00 0.00 36.51 3.34
2776 3116 6.851222 AATCATAAATCGGTTGCTCACTAG 57.149 37.500 0.00 0.00 0.00 2.57
2800 3140 2.268920 GGGATGCTGCGACAGGAA 59.731 61.111 5.31 0.00 35.08 3.36
2801 3141 1.377202 GGGATGCTGCGACAGGAAA 60.377 57.895 5.31 0.00 35.08 3.13
2802 3142 0.960364 GGGATGCTGCGACAGGAAAA 60.960 55.000 5.31 0.00 35.08 2.29
2803 3143 0.881118 GGATGCTGCGACAGGAAAAA 59.119 50.000 5.31 0.00 35.08 1.94
2804 3144 1.474077 GGATGCTGCGACAGGAAAAAT 59.526 47.619 5.31 0.00 35.08 1.82
2805 3145 2.682856 GGATGCTGCGACAGGAAAAATA 59.317 45.455 5.31 0.00 35.08 1.40
2807 3147 4.202050 GGATGCTGCGACAGGAAAAATAAT 60.202 41.667 5.31 0.00 35.08 1.28
2808 3148 4.782019 TGCTGCGACAGGAAAAATAATT 57.218 36.364 8.57 0.00 31.21 1.40
2809 3149 5.888691 TGCTGCGACAGGAAAAATAATTA 57.111 34.783 8.57 0.00 31.21 1.40
2810 3150 6.449635 TGCTGCGACAGGAAAAATAATTAT 57.550 33.333 8.57 0.00 31.21 1.28
2812 3152 8.165239 TGCTGCGACAGGAAAAATAATTATAT 57.835 30.769 0.00 0.00 31.21 0.86
2813 3153 8.075574 TGCTGCGACAGGAAAAATAATTATATG 58.924 33.333 0.00 0.00 31.21 1.78
2814 3154 8.289618 GCTGCGACAGGAAAAATAATTATATGA 58.710 33.333 0.00 0.00 31.21 2.15
2815 3155 9.817365 CTGCGACAGGAAAAATAATTATATGAG 57.183 33.333 0.00 0.00 0.00 2.90
2816 3156 9.554395 TGCGACAGGAAAAATAATTATATGAGA 57.446 29.630 0.00 0.00 0.00 3.27
2817 3157 9.813080 GCGACAGGAAAAATAATTATATGAGAC 57.187 33.333 0.00 0.00 0.00 3.36
2831 3171 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
2832 3172 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
2833 3173 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
2834 3174 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09
2835 3175 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
2836 3176 0.108615 CCAGGTCTCACGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
2837 3177 0.108615 CAGGTCTCACGGTTAGCAGG 60.109 60.000 0.00 0.00 0.00 4.85
2838 3178 0.542232 AGGTCTCACGGTTAGCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
2839 3179 0.389948 GGTCTCACGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
2840 3180 0.601558 GTCTCACGGTTAGCAGGTGA 59.398 55.000 3.41 3.41 38.29 4.02
2842 3182 3.045518 TCACGGTTAGCAGGTGAGA 57.954 52.632 0.00 0.00 35.89 3.27
2843 3183 0.601558 TCACGGTTAGCAGGTGAGAC 59.398 55.000 0.00 0.00 35.89 3.36
2844 3184 0.389948 CACGGTTAGCAGGTGAGACC 60.390 60.000 0.00 0.00 38.99 3.85
2845 3185 1.218316 CGGTTAGCAGGTGAGACCC 59.782 63.158 0.00 0.00 39.75 4.46
2846 3186 1.218316 GGTTAGCAGGTGAGACCCG 59.782 63.158 0.00 0.00 39.75 5.28
2847 3187 1.448013 GTTAGCAGGTGAGACCCGC 60.448 63.158 0.00 0.00 41.94 6.13
2848 3188 2.656069 TTAGCAGGTGAGACCCGCC 61.656 63.158 0.00 0.00 42.60 6.13
2851 3191 4.087892 CAGGTGAGACCCGCCCTG 62.088 72.222 0.00 0.00 46.65 4.45
2852 3192 4.316823 AGGTGAGACCCGCCCTGA 62.317 66.667 0.00 0.00 46.65 3.86
2853 3193 3.083997 GGTGAGACCCGCCCTGAT 61.084 66.667 0.00 0.00 39.55 2.90
2854 3194 2.187946 GTGAGACCCGCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
2855 3195 3.083349 TGAGACCCGCCCTGATGG 61.083 66.667 0.00 0.00 37.09 3.51
2856 3196 2.764128 GAGACCCGCCCTGATGGA 60.764 66.667 0.00 0.00 35.39 3.41
2857 3197 2.040464 AGACCCGCCCTGATGGAT 60.040 61.111 0.00 0.00 35.39 3.41
2858 3198 2.111878 GACCCGCCCTGATGGATG 59.888 66.667 0.00 0.00 35.39 3.51
2859 3199 2.366837 ACCCGCCCTGATGGATGA 60.367 61.111 0.00 0.00 35.39 2.92
2860 3200 2.111878 CCCGCCCTGATGGATGAC 59.888 66.667 0.00 0.00 35.39 3.06
2861 3201 2.745308 CCCGCCCTGATGGATGACA 61.745 63.158 0.00 0.00 35.39 3.58
2862 3202 1.524621 CCGCCCTGATGGATGACAC 60.525 63.158 0.00 0.00 35.39 3.67
2863 3203 1.221566 CGCCCTGATGGATGACACA 59.778 57.895 0.00 0.00 35.39 3.72
2864 3204 0.179037 CGCCCTGATGGATGACACAT 60.179 55.000 0.00 0.00 35.39 3.21
2865 3205 1.315690 GCCCTGATGGATGACACATG 58.684 55.000 0.00 0.00 35.39 3.21
2866 3206 1.134007 GCCCTGATGGATGACACATGA 60.134 52.381 0.00 0.00 35.39 3.07
2867 3207 2.569059 CCCTGATGGATGACACATGAC 58.431 52.381 0.00 0.00 35.39 3.06
2868 3208 2.092807 CCCTGATGGATGACACATGACA 60.093 50.000 0.00 0.00 35.39 3.58
2869 3209 3.434596 CCCTGATGGATGACACATGACAT 60.435 47.826 0.00 1.97 35.39 3.06
2870 3210 4.204799 CCTGATGGATGACACATGACATT 58.795 43.478 0.00 0.00 34.57 2.71
2871 3211 4.275196 CCTGATGGATGACACATGACATTC 59.725 45.833 0.00 1.83 34.57 2.67
2872 3212 4.846040 TGATGGATGACACATGACATTCA 58.154 39.130 7.60 7.60 39.34 2.57
2873 3213 4.637091 TGATGGATGACACATGACATTCAC 59.363 41.667 7.35 3.86 38.23 3.18
2874 3214 4.018484 TGGATGACACATGACATTCACA 57.982 40.909 0.00 1.52 32.30 3.58
2875 3215 4.396522 TGGATGACACATGACATTCACAA 58.603 39.130 0.00 0.00 32.30 3.33
2876 3216 4.826183 TGGATGACACATGACATTCACAAA 59.174 37.500 0.00 0.00 32.30 2.83
2877 3217 5.477637 TGGATGACACATGACATTCACAAAT 59.522 36.000 0.00 0.00 32.30 2.32
2878 3218 6.032094 GGATGACACATGACATTCACAAATC 58.968 40.000 0.00 0.00 31.08 2.17
2879 3219 6.349528 GGATGACACATGACATTCACAAATCA 60.350 38.462 0.00 0.00 31.08 2.57
2880 3220 6.578163 TGACACATGACATTCACAAATCAT 57.422 33.333 0.00 0.00 0.00 2.45
2881 3221 7.684937 TGACACATGACATTCACAAATCATA 57.315 32.000 0.00 0.00 0.00 2.15
2882 3222 8.108551 TGACACATGACATTCACAAATCATAA 57.891 30.769 0.00 0.00 0.00 1.90
2883 3223 8.574737 TGACACATGACATTCACAAATCATAAA 58.425 29.630 0.00 0.00 0.00 1.40
2884 3224 8.975410 ACACATGACATTCACAAATCATAAAG 57.025 30.769 0.00 0.00 0.00 1.85
2885 3225 8.579006 ACACATGACATTCACAAATCATAAAGT 58.421 29.630 0.00 0.00 0.00 2.66
2902 3242 8.437274 TCATAAAGTATCTAATCTCTTCCCCC 57.563 38.462 0.00 0.00 0.00 5.40
2903 3243 8.242325 TCATAAAGTATCTAATCTCTTCCCCCT 58.758 37.037 0.00 0.00 0.00 4.79
2904 3244 9.548631 CATAAAGTATCTAATCTCTTCCCCCTA 57.451 37.037 0.00 0.00 0.00 3.53
2907 3247 9.467030 AAAGTATCTAATCTCTTCCCCCTAATT 57.533 33.333 0.00 0.00 0.00 1.40
2908 3248 9.467030 AAGTATCTAATCTCTTCCCCCTAATTT 57.533 33.333 0.00 0.00 0.00 1.82
2909 3249 9.106977 AGTATCTAATCTCTTCCCCCTAATTTC 57.893 37.037 0.00 0.00 0.00 2.17
2910 3250 7.954539 ATCTAATCTCTTCCCCCTAATTTCA 57.045 36.000 0.00 0.00 0.00 2.69
2911 3251 7.380423 TCTAATCTCTTCCCCCTAATTTCAG 57.620 40.000 0.00 0.00 0.00 3.02
2912 3252 5.394562 AATCTCTTCCCCCTAATTTCAGG 57.605 43.478 0.00 0.00 35.26 3.86
2913 3253 3.815507 TCTCTTCCCCCTAATTTCAGGT 58.184 45.455 0.00 0.00 33.44 4.00
2914 3254 3.523564 TCTCTTCCCCCTAATTTCAGGTG 59.476 47.826 0.00 0.00 33.44 4.00
2915 3255 3.265489 TCTTCCCCCTAATTTCAGGTGT 58.735 45.455 0.00 0.00 33.44 4.16
2916 3256 3.010138 TCTTCCCCCTAATTTCAGGTGTG 59.990 47.826 0.00 0.00 33.44 3.82
2917 3257 2.354328 TCCCCCTAATTTCAGGTGTGT 58.646 47.619 0.00 0.00 33.44 3.72
2918 3258 2.307686 TCCCCCTAATTTCAGGTGTGTC 59.692 50.000 0.00 0.00 33.44 3.67
2919 3259 2.041081 CCCCCTAATTTCAGGTGTGTCA 59.959 50.000 0.00 0.00 33.44 3.58
2920 3260 3.309121 CCCCCTAATTTCAGGTGTGTCAT 60.309 47.826 0.00 0.00 33.44 3.06
2921 3261 3.947834 CCCCTAATTTCAGGTGTGTCATC 59.052 47.826 0.00 0.00 33.44 2.92
2922 3262 3.947834 CCCTAATTTCAGGTGTGTCATCC 59.052 47.826 0.00 0.00 33.44 3.51
2923 3263 4.567537 CCCTAATTTCAGGTGTGTCATCCA 60.568 45.833 0.00 0.00 33.44 3.41
2924 3264 5.195940 CCTAATTTCAGGTGTGTCATCCAT 58.804 41.667 0.00 0.00 0.00 3.41
2925 3265 5.297776 CCTAATTTCAGGTGTGTCATCCATC 59.702 44.000 0.00 0.00 0.00 3.51
2926 3266 3.786368 TTTCAGGTGTGTCATCCATCA 57.214 42.857 0.97 0.00 0.00 3.07
2927 3267 4.305539 TTTCAGGTGTGTCATCCATCAT 57.694 40.909 0.97 0.00 0.00 2.45
2928 3268 3.271055 TCAGGTGTGTCATCCATCATG 57.729 47.619 0.00 0.00 0.00 3.07
2929 3269 2.839425 TCAGGTGTGTCATCCATCATGA 59.161 45.455 0.00 0.00 39.39 3.07
2930 3270 3.457012 TCAGGTGTGTCATCCATCATGAT 59.543 43.478 1.18 1.18 43.72 2.45
2931 3271 3.564225 CAGGTGTGTCATCCATCATGATG 59.436 47.826 25.97 25.97 43.72 3.07
2942 3282 2.847441 CATCATGATGGGTCTCACCTG 58.153 52.381 25.37 0.00 38.64 4.00
2943 3283 0.543277 TCATGATGGGTCTCACCTGC 59.457 55.000 0.00 0.00 38.64 4.85
2944 3284 0.545171 CATGATGGGTCTCACCTGCT 59.455 55.000 0.00 0.00 38.64 4.24
2945 3285 1.764723 CATGATGGGTCTCACCTGCTA 59.235 52.381 0.00 0.00 38.64 3.49
2946 3286 1.951209 TGATGGGTCTCACCTGCTAA 58.049 50.000 0.00 0.00 38.64 3.09
2947 3287 1.555075 TGATGGGTCTCACCTGCTAAC 59.445 52.381 0.00 0.00 38.64 2.34
2948 3288 0.912486 ATGGGTCTCACCTGCTAACC 59.088 55.000 0.00 0.00 38.64 2.85
2949 3289 1.602771 GGGTCTCACCTGCTAACCC 59.397 63.158 0.00 0.00 42.62 4.11
2950 3290 1.218316 GGTCTCACCTGCTAACCCG 59.782 63.158 0.00 0.00 34.73 5.28
2951 3291 1.542187 GGTCTCACCTGCTAACCCGT 61.542 60.000 0.00 0.00 34.73 5.28
2952 3292 0.389948 GTCTCACCTGCTAACCCGTG 60.390 60.000 0.00 0.00 0.00 4.94
2953 3293 0.541063 TCTCACCTGCTAACCCGTGA 60.541 55.000 0.00 0.00 34.26 4.35
2954 3294 0.108615 CTCACCTGCTAACCCGTGAG 60.109 60.000 2.01 2.01 44.38 3.51
2955 3295 0.541063 TCACCTGCTAACCCGTGAGA 60.541 55.000 0.00 0.00 31.80 3.27
2956 3296 0.389948 CACCTGCTAACCCGTGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2957 3297 1.218316 CCTGCTAACCCGTGAGACC 59.782 63.158 0.00 0.00 0.00 3.85
2958 3298 1.258445 CCTGCTAACCCGTGAGACCT 61.258 60.000 0.00 0.00 0.00 3.85
2959 3299 0.108615 CTGCTAACCCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
2960 3300 1.218316 GCTAACCCGTGAGACCTGG 59.782 63.158 0.00 0.00 0.00 4.45
2961 3301 1.542187 GCTAACCCGTGAGACCTGGT 61.542 60.000 0.00 0.00 0.00 4.00
2962 3302 0.531200 CTAACCCGTGAGACCTGGTC 59.469 60.000 19.20 19.20 0.00 4.02
2963 3303 0.113776 TAACCCGTGAGACCTGGTCT 59.886 55.000 28.70 28.70 46.42 3.85
2964 3304 0.113776 AACCCGTGAGACCTGGTCTA 59.886 55.000 28.41 14.31 43.53 2.59
2965 3305 0.335361 ACCCGTGAGACCTGGTCTAT 59.665 55.000 28.41 8.93 43.53 1.98
2966 3306 0.747255 CCCGTGAGACCTGGTCTATG 59.253 60.000 28.41 19.51 43.53 2.23
2967 3307 0.103208 CCGTGAGACCTGGTCTATGC 59.897 60.000 28.41 16.91 43.53 3.14
2968 3308 0.103208 CGTGAGACCTGGTCTATGCC 59.897 60.000 28.41 16.56 43.53 4.40
2969 3309 0.466124 GTGAGACCTGGTCTATGCCC 59.534 60.000 28.41 16.20 43.53 5.36
2970 3310 0.339859 TGAGACCTGGTCTATGCCCT 59.660 55.000 28.41 5.74 43.53 5.19
2971 3311 1.044611 GAGACCTGGTCTATGCCCTC 58.955 60.000 28.41 11.40 43.53 4.30
3029 3511 8.791675 TGCATAATCAAAATGAACAAGTGTAGA 58.208 29.630 0.00 0.00 0.00 2.59
3093 3575 4.690748 CACTAATTTGGACGAGAAAGCTGA 59.309 41.667 0.00 0.00 0.00 4.26
3096 3578 2.440539 TTGGACGAGAAAGCTGACTC 57.559 50.000 9.51 9.51 0.00 3.36
3153 4145 6.017605 CCTCTAAGCATGGATGTAAATGTCAC 60.018 42.308 0.00 0.00 0.00 3.67
3215 4207 3.134458 CGAGAAAAACCTCACTTCAGCT 58.866 45.455 0.00 0.00 32.86 4.24
3216 4208 3.185391 CGAGAAAAACCTCACTTCAGCTC 59.815 47.826 0.00 0.00 32.86 4.09
3218 4210 2.622064 AAAACCTCACTTCAGCTCGT 57.378 45.000 0.00 0.00 0.00 4.18
3220 4212 3.963428 AAACCTCACTTCAGCTCGTAT 57.037 42.857 0.00 0.00 0.00 3.06
3224 4216 2.685388 CCTCACTTCAGCTCGTATGAGA 59.315 50.000 16.39 0.00 45.57 3.27
3225 4217 3.129462 CCTCACTTCAGCTCGTATGAGAA 59.871 47.826 16.39 0.79 45.57 2.87
3282 4274 2.257034 CTAAACCGCCGAGAGTGTAAC 58.743 52.381 0.00 0.00 0.00 2.50
3346 4338 1.108727 CCTTGGTCTGCACAAGCCAA 61.109 55.000 9.46 7.83 42.98 4.52
3347 4339 0.746063 CTTGGTCTGCACAAGCCAAA 59.254 50.000 2.94 0.00 39.80 3.28
3350 4342 1.761784 TGGTCTGCACAAGCCAAAAAT 59.238 42.857 0.00 0.00 41.13 1.82
3385 4379 3.445450 ACGATCACACTGAGCACTAGAAT 59.555 43.478 0.00 0.00 31.10 2.40
3429 4423 0.034059 AGCTCACCTTCTTGACACCG 59.966 55.000 0.00 0.00 0.00 4.94
3435 4429 0.673644 CCTTCTTGACACCGCGGATT 60.674 55.000 35.90 18.58 0.00 3.01
3559 4553 5.050490 ACAGGAATAACATACATGAGCGAC 58.950 41.667 0.00 0.00 0.00 5.19
3629 4623 3.119316 CCAAACACACCAACAGCTGTTTA 60.119 43.478 29.23 0.00 35.55 2.01
3630 4624 4.441356 CCAAACACACCAACAGCTGTTTAT 60.441 41.667 29.23 17.16 35.55 1.40
3665 4659 3.444742 ACAATTACACATCCAGCCACATG 59.555 43.478 0.00 0.00 0.00 3.21
3697 4691 3.473625 GGGAATGATAAATCCCGAACGT 58.526 45.455 0.00 0.00 45.56 3.99
3698 4692 3.881089 GGGAATGATAAATCCCGAACGTT 59.119 43.478 0.00 0.00 45.56 3.99
3699 4693 4.024302 GGGAATGATAAATCCCGAACGTTC 60.024 45.833 18.47 18.47 45.56 3.95
3700 4694 7.251079 GGGAATGATAAATCCCGAACGTTCG 62.251 48.000 36.99 36.99 45.56 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.538135 AACGGGCCCTGTAGTCCTT 60.538 57.895 22.43 0.26 0.00 3.36
285 286 2.043248 AGCCGTCGACCCCATACT 60.043 61.111 10.58 0.00 0.00 2.12
471 473 4.414852 CAATTTGTTCGATCGCCTTCATT 58.585 39.130 11.09 3.19 0.00 2.57
516 518 2.099141 TCGTCCTTGAATTCTGGCTG 57.901 50.000 7.05 5.34 0.00 4.85
519 521 3.441572 AGCAAATCGTCCTTGAATTCTGG 59.558 43.478 7.05 9.11 0.00 3.86
522 524 4.685169 TCAGCAAATCGTCCTTGAATTC 57.315 40.909 0.00 0.00 0.00 2.17
523 525 4.676196 GCATCAGCAAATCGTCCTTGAATT 60.676 41.667 0.00 0.00 41.58 2.17
524 526 3.181493 GCATCAGCAAATCGTCCTTGAAT 60.181 43.478 0.00 0.00 41.58 2.57
525 527 2.162208 GCATCAGCAAATCGTCCTTGAA 59.838 45.455 0.00 0.00 41.58 2.69
526 528 1.739466 GCATCAGCAAATCGTCCTTGA 59.261 47.619 0.00 0.00 41.58 3.02
527 529 1.202222 GGCATCAGCAAATCGTCCTTG 60.202 52.381 0.00 0.00 44.61 3.61
528 530 1.098050 GGCATCAGCAAATCGTCCTT 58.902 50.000 0.00 0.00 44.61 3.36
529 531 0.035152 TGGCATCAGCAAATCGTCCT 60.035 50.000 0.00 0.00 44.61 3.85
530 532 0.810648 TTGGCATCAGCAAATCGTCC 59.189 50.000 0.00 0.00 44.61 4.79
531 533 1.199789 TGTTGGCATCAGCAAATCGTC 59.800 47.619 0.00 0.00 44.61 4.20
532 534 1.246649 TGTTGGCATCAGCAAATCGT 58.753 45.000 0.00 0.00 44.61 3.73
533 535 2.572191 ATGTTGGCATCAGCAAATCG 57.428 45.000 4.39 0.00 44.61 3.34
534 536 3.592059 ACAATGTTGGCATCAGCAAATC 58.408 40.909 4.39 0.00 44.61 2.17
535 537 3.688694 ACAATGTTGGCATCAGCAAAT 57.311 38.095 4.39 0.00 44.61 2.32
536 538 3.472283 AACAATGTTGGCATCAGCAAA 57.528 38.095 0.00 0.00 44.61 3.68
537 539 3.391965 GAAACAATGTTGGCATCAGCAA 58.608 40.909 0.00 0.00 44.61 3.91
538 540 2.288948 GGAAACAATGTTGGCATCAGCA 60.289 45.455 0.00 0.00 44.61 4.41
539 541 2.340337 GGAAACAATGTTGGCATCAGC 58.660 47.619 0.00 0.00 41.10 4.26
540 542 2.228582 TCGGAAACAATGTTGGCATCAG 59.771 45.455 0.00 0.00 33.50 2.90
541 543 2.234143 TCGGAAACAATGTTGGCATCA 58.766 42.857 0.00 0.00 33.50 3.07
542 544 3.244976 CTTCGGAAACAATGTTGGCATC 58.755 45.455 0.00 0.00 33.50 3.91
543 545 2.627699 ACTTCGGAAACAATGTTGGCAT 59.372 40.909 0.00 0.00 36.80 4.40
544 546 2.028130 ACTTCGGAAACAATGTTGGCA 58.972 42.857 0.00 0.00 0.00 4.92
545 547 2.793278 ACTTCGGAAACAATGTTGGC 57.207 45.000 0.00 0.00 0.00 4.52
546 548 3.242936 ACGAACTTCGGAAACAATGTTGG 60.243 43.478 15.42 0.00 45.59 3.77
547 549 3.947626 ACGAACTTCGGAAACAATGTTG 58.052 40.909 15.42 0.00 45.59 3.33
548 550 4.024641 GGTACGAACTTCGGAAACAATGTT 60.025 41.667 15.42 0.00 45.59 2.71
549 551 3.495753 GGTACGAACTTCGGAAACAATGT 59.504 43.478 15.42 0.00 45.59 2.71
550 552 3.495377 TGGTACGAACTTCGGAAACAATG 59.505 43.478 15.42 0.00 45.59 2.82
551 553 3.731089 TGGTACGAACTTCGGAAACAAT 58.269 40.909 15.42 0.00 45.59 2.71
552 554 3.125316 CTGGTACGAACTTCGGAAACAA 58.875 45.455 15.42 3.86 45.59 2.83
553 555 2.361757 TCTGGTACGAACTTCGGAAACA 59.638 45.455 15.42 10.44 45.59 2.83
554 556 2.985139 CTCTGGTACGAACTTCGGAAAC 59.015 50.000 15.42 9.81 45.59 2.78
555 557 2.624838 ACTCTGGTACGAACTTCGGAAA 59.375 45.455 15.42 0.00 45.59 3.13
556 558 2.227388 GACTCTGGTACGAACTTCGGAA 59.773 50.000 15.42 0.61 45.59 4.30
557 559 1.808945 GACTCTGGTACGAACTTCGGA 59.191 52.381 15.42 3.84 45.59 4.55
558 560 1.538512 TGACTCTGGTACGAACTTCGG 59.461 52.381 15.42 0.00 45.59 4.30
559 561 2.983402 TGACTCTGGTACGAACTTCG 57.017 50.000 9.68 9.68 46.93 3.79
560 562 3.126514 TCGATGACTCTGGTACGAACTTC 59.873 47.826 0.00 0.00 0.00 3.01
568 570 3.010420 CACTCTGTCGATGACTCTGGTA 58.990 50.000 0.00 0.00 33.15 3.25
571 573 3.567576 AACACTCTGTCGATGACTCTG 57.432 47.619 0.00 0.00 33.15 3.35
572 574 4.072839 TGTAACACTCTGTCGATGACTCT 58.927 43.478 0.00 0.00 33.15 3.24
593 595 4.935352 TGGAACTTTTTCTCCATGGTTG 57.065 40.909 12.58 6.40 36.79 3.77
612 616 8.601047 TCCTCATCTTATCTACCTTATCATGG 57.399 38.462 0.00 0.00 0.00 3.66
617 621 8.962679 GTCGATTCCTCATCTTATCTACCTTAT 58.037 37.037 0.00 0.00 0.00 1.73
619 623 6.072397 CGTCGATTCCTCATCTTATCTACCTT 60.072 42.308 0.00 0.00 0.00 3.50
620 624 5.413213 CGTCGATTCCTCATCTTATCTACCT 59.587 44.000 0.00 0.00 0.00 3.08
627 631 2.293677 GCTCCGTCGATTCCTCATCTTA 59.706 50.000 0.00 0.00 0.00 2.10
632 636 2.798689 CGCTCCGTCGATTCCTCA 59.201 61.111 0.00 0.00 0.00 3.86
688 692 2.491693 GGAATGAGGGTCGCAATTTTCA 59.508 45.455 0.00 0.00 0.00 2.69
796 800 5.921962 AATATCTGGCAAGAAAAGGGAAC 57.078 39.130 0.00 0.00 35.59 3.62
889 894 3.068732 GCCTTTATTCCATTCTTCAGGGC 59.931 47.826 0.00 0.00 0.00 5.19
922 927 3.121030 CTCACTCCTTTGCGGCCG 61.121 66.667 24.05 24.05 0.00 6.13
923 928 0.889186 TTTCTCACTCCTTTGCGGCC 60.889 55.000 0.00 0.00 0.00 6.13
946 951 4.142902 CGCACACGGAATAAATCTTTCTGT 60.143 41.667 0.00 0.00 42.09 3.41
966 971 1.202486 AGAAAGAACGAACAGGACGCA 60.202 47.619 0.00 0.00 0.00 5.24
1052 1057 3.303351 AGCTGCTACAAATTATGGCCT 57.697 42.857 3.32 0.00 0.00 5.19
1053 1058 4.389374 TCTAGCTGCTACAAATTATGGCC 58.611 43.478 5.02 0.00 0.00 5.36
1054 1059 7.099764 TCTATCTAGCTGCTACAAATTATGGC 58.900 38.462 5.02 0.00 0.00 4.40
1056 1061 9.703892 ACTTCTATCTAGCTGCTACAAATTATG 57.296 33.333 5.02 0.00 0.00 1.90
1062 1087 6.775594 TGAACTTCTATCTAGCTGCTACAA 57.224 37.500 5.02 0.00 0.00 2.41
1441 1728 2.258591 GACTTGAGGAGCGCGTCA 59.741 61.111 8.43 8.84 37.15 4.35
1564 1858 0.882927 GCACGTTGTTGTAGCTCCCA 60.883 55.000 0.00 0.00 0.00 4.37
1566 1860 0.790814 GAGCACGTTGTTGTAGCTCC 59.209 55.000 9.90 0.00 44.37 4.70
1664 1960 0.243095 ACGAAACAGAGCGGAGTACC 59.757 55.000 0.00 0.00 0.00 3.34
1880 2184 9.930693 CAGGAAAAAGATACTACTAGTTGAGTT 57.069 33.333 11.43 0.00 39.81 3.01
1881 2185 8.035984 GCAGGAAAAAGATACTACTAGTTGAGT 58.964 37.037 11.43 7.40 42.69 3.41
1885 2189 8.376270 ACAAGCAGGAAAAAGATACTACTAGTT 58.624 33.333 0.00 0.00 0.00 2.24
1890 2194 6.426937 TCACACAAGCAGGAAAAAGATACTAC 59.573 38.462 0.00 0.00 0.00 2.73
1891 2195 6.530120 TCACACAAGCAGGAAAAAGATACTA 58.470 36.000 0.00 0.00 0.00 1.82
1899 2203 4.462483 AGAAACTTCACACAAGCAGGAAAA 59.538 37.500 0.00 0.00 0.00 2.29
1920 2224 3.008266 TGAGTGGATGATGAACAAGCAGA 59.992 43.478 0.00 0.00 0.00 4.26
1935 2239 4.403752 CCAAGATCAGTAGTCATGAGTGGA 59.596 45.833 13.54 8.33 32.64 4.02
1939 2243 4.370049 CAGCCAAGATCAGTAGTCATGAG 58.630 47.826 0.00 0.00 0.00 2.90
1944 2248 2.167281 TGAGCAGCCAAGATCAGTAGTC 59.833 50.000 0.00 0.00 29.40 2.59
1959 2268 2.503356 ACATCTTCCTAACCCTGAGCAG 59.497 50.000 0.00 0.00 0.00 4.24
1970 2279 2.879026 CGTCATCTCCGACATCTTCCTA 59.121 50.000 0.00 0.00 35.54 2.94
1977 2286 1.678627 CTTCTCCGTCATCTCCGACAT 59.321 52.381 0.00 0.00 35.54 3.06
2141 2450 1.290009 GTGTTTCCAGGGCATGCAC 59.710 57.895 21.36 17.78 0.00 4.57
2143 2452 2.973082 GGTGTTTCCAGGGCATGC 59.027 61.111 9.90 9.90 35.97 4.06
2144 2453 1.303236 TCGGTGTTTCCAGGGCATG 60.303 57.895 0.00 0.00 35.57 4.06
2171 2481 1.595466 AACATTTGGTCGTTACGGCA 58.405 45.000 12.40 0.00 30.88 5.69
2188 2499 6.093633 AGGCAACCGATGTAATCTCTTAAAAC 59.906 38.462 0.00 0.00 42.58 2.43
2193 2504 3.914426 AGGCAACCGATGTAATCTCTT 57.086 42.857 0.00 0.00 42.58 2.85
2237 2548 2.663188 GCCTCGACCGCATCCATC 60.663 66.667 0.00 0.00 0.00 3.51
2249 2560 3.898509 CTCCTCTCGGCAGCCTCG 61.899 72.222 10.54 0.00 0.00 4.63
2279 2590 1.602377 CCAGAAACAACGTTGGAGGTC 59.398 52.381 30.34 20.16 32.34 3.85
2325 2639 0.175760 TCGTATGGCTTGAGGTGCTC 59.824 55.000 0.00 0.00 0.00 4.26
2386 2701 4.999950 CAGAAGCTAGTCAGTCAAATGGTT 59.000 41.667 0.00 0.00 0.00 3.67
2388 2703 3.373439 GCAGAAGCTAGTCAGTCAAATGG 59.627 47.826 0.00 0.00 37.91 3.16
2518 2833 2.039137 GGAAGGGAGGACGAGGGT 59.961 66.667 0.00 0.00 0.00 4.34
2640 2955 0.398318 GGTATGCTGATGGTCCTCCC 59.602 60.000 0.00 0.00 0.00 4.30
2688 3012 9.046296 GCAGAAGCATTATTACACTGTATAACT 57.954 33.333 0.00 0.00 41.58 2.24
2694 3018 6.824305 AAAGCAGAAGCATTATTACACTGT 57.176 33.333 0.00 0.00 45.49 3.55
2718 3042 2.418368 TGTAGGCATCCGAAATTGCT 57.582 45.000 0.00 0.00 38.88 3.91
2764 3104 1.473434 CCCGATTCCTAGTGAGCAACC 60.473 57.143 0.00 0.00 0.00 3.77
2776 3116 2.974698 CGCAGCATCCCCGATTCC 60.975 66.667 0.00 0.00 0.00 3.01
2814 3154 1.546961 CTAACCGTGAGACCTGGTCT 58.453 55.000 28.70 28.70 46.42 3.85
2815 3155 0.108756 GCTAACCGTGAGACCTGGTC 60.109 60.000 19.20 19.20 34.11 4.02
2816 3156 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
2817 3157 0.108615 CTGCTAACCGTGAGACCTGG 60.109 60.000 0.00 0.00 0.00 4.45
2818 3158 0.108615 CCTGCTAACCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
2819 3159 0.542232 ACCTGCTAACCGTGAGACCT 60.542 55.000 0.00 0.00 0.00 3.85
2820 3160 0.389948 CACCTGCTAACCGTGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
2821 3161 0.601558 TCACCTGCTAACCGTGAGAC 59.398 55.000 0.00 0.00 32.85 3.36
2822 3162 3.045518 TCACCTGCTAACCGTGAGA 57.954 52.632 0.00 0.00 32.85 3.27
2823 3163 3.425578 CTCACCTGCTAACCGTGAG 57.574 57.895 2.35 2.35 45.33 3.51
2824 3164 0.601558 GTCTCACCTGCTAACCGTGA 59.398 55.000 0.00 0.00 35.34 4.35
2825 3165 0.389948 GGTCTCACCTGCTAACCGTG 60.390 60.000 0.00 0.00 34.73 4.94
2826 3166 1.542187 GGGTCTCACCTGCTAACCGT 61.542 60.000 0.00 0.00 38.64 4.83
2827 3167 1.218316 GGGTCTCACCTGCTAACCG 59.782 63.158 0.00 0.00 38.64 4.44
2828 3168 1.218316 CGGGTCTCACCTGCTAACC 59.782 63.158 0.00 0.00 37.90 2.85
2829 3169 4.913126 CGGGTCTCACCTGCTAAC 57.087 61.111 0.00 0.00 37.90 2.34
2835 3175 3.625632 ATCAGGGCGGGTCTCACCT 62.626 63.158 0.00 0.00 38.64 4.00
2836 3176 3.083997 ATCAGGGCGGGTCTCACC 61.084 66.667 0.00 0.00 37.60 4.02
2837 3177 2.187946 CATCAGGGCGGGTCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
2838 3178 2.896677 ATCCATCAGGGCGGGTCTCA 62.897 60.000 0.00 0.00 36.21 3.27
2839 3179 2.143419 ATCCATCAGGGCGGGTCTC 61.143 63.158 0.00 0.00 36.21 3.36
2840 3180 2.040464 ATCCATCAGGGCGGGTCT 60.040 61.111 0.00 0.00 36.21 3.85
2841 3181 2.111878 CATCCATCAGGGCGGGTC 59.888 66.667 0.00 0.00 36.21 4.46
2842 3182 2.366837 TCATCCATCAGGGCGGGT 60.367 61.111 0.00 0.00 36.21 5.28
2843 3183 2.111878 GTCATCCATCAGGGCGGG 59.888 66.667 0.00 0.00 36.21 6.13
2844 3184 1.524621 GTGTCATCCATCAGGGCGG 60.525 63.158 0.00 0.00 36.21 6.13
2845 3185 0.179037 ATGTGTCATCCATCAGGGCG 60.179 55.000 0.00 0.00 36.21 6.13
2846 3186 1.134007 TCATGTGTCATCCATCAGGGC 60.134 52.381 0.00 0.00 36.21 5.19
2847 3187 2.092807 TGTCATGTGTCATCCATCAGGG 60.093 50.000 0.00 0.00 34.83 4.45
2848 3188 3.271055 TGTCATGTGTCATCCATCAGG 57.729 47.619 0.00 0.00 0.00 3.86
2849 3189 4.879545 TGAATGTCATGTGTCATCCATCAG 59.120 41.667 0.00 0.00 0.00 2.90
2850 3190 4.637091 GTGAATGTCATGTGTCATCCATCA 59.363 41.667 0.00 0.00 0.00 3.07
2851 3191 4.637091 TGTGAATGTCATGTGTCATCCATC 59.363 41.667 0.00 0.00 0.00 3.51
2852 3192 4.591929 TGTGAATGTCATGTGTCATCCAT 58.408 39.130 0.00 0.00 0.00 3.41
2853 3193 4.018484 TGTGAATGTCATGTGTCATCCA 57.982 40.909 0.00 0.00 0.00 3.41
2854 3194 5.375417 TTTGTGAATGTCATGTGTCATCC 57.625 39.130 0.00 0.00 0.00 3.51
2855 3195 6.614160 TGATTTGTGAATGTCATGTGTCATC 58.386 36.000 0.00 0.00 0.00 2.92
2856 3196 6.578163 TGATTTGTGAATGTCATGTGTCAT 57.422 33.333 0.00 0.00 0.00 3.06
2857 3197 6.578163 ATGATTTGTGAATGTCATGTGTCA 57.422 33.333 0.00 0.00 30.61 3.58
2858 3198 8.969121 TTTATGATTTGTGAATGTCATGTGTC 57.031 30.769 0.00 0.00 33.65 3.67
2859 3199 8.579006 ACTTTATGATTTGTGAATGTCATGTGT 58.421 29.630 0.00 0.00 33.65 3.72
2860 3200 8.975410 ACTTTATGATTTGTGAATGTCATGTG 57.025 30.769 0.00 0.00 33.65 3.21
2876 3216 9.052365 GGGGGAAGAGATTAGATACTTTATGAT 57.948 37.037 0.00 0.00 0.00 2.45
2877 3217 8.242325 AGGGGGAAGAGATTAGATACTTTATGA 58.758 37.037 0.00 0.00 0.00 2.15
2878 3218 8.442660 AGGGGGAAGAGATTAGATACTTTATG 57.557 38.462 0.00 0.00 0.00 1.90
2881 3221 9.467030 AATTAGGGGGAAGAGATTAGATACTTT 57.533 33.333 0.00 0.00 0.00 2.66
2882 3222 9.467030 AAATTAGGGGGAAGAGATTAGATACTT 57.533 33.333 0.00 0.00 0.00 2.24
2883 3223 9.106977 GAAATTAGGGGGAAGAGATTAGATACT 57.893 37.037 0.00 0.00 0.00 2.12
2884 3224 8.881262 TGAAATTAGGGGGAAGAGATTAGATAC 58.119 37.037 0.00 0.00 0.00 2.24
2885 3225 9.105844 CTGAAATTAGGGGGAAGAGATTAGATA 57.894 37.037 0.00 0.00 0.00 1.98
2886 3226 7.018049 CCTGAAATTAGGGGGAAGAGATTAGAT 59.982 40.741 0.00 0.00 34.06 1.98
2887 3227 6.330250 CCTGAAATTAGGGGGAAGAGATTAGA 59.670 42.308 0.00 0.00 34.06 2.10
2888 3228 6.101881 ACCTGAAATTAGGGGGAAGAGATTAG 59.898 42.308 0.00 0.00 42.35 1.73
2889 3229 5.976870 ACCTGAAATTAGGGGGAAGAGATTA 59.023 40.000 0.00 0.00 42.35 1.75
2890 3230 4.796265 ACCTGAAATTAGGGGGAAGAGATT 59.204 41.667 0.00 0.00 42.35 2.40
2891 3231 4.166919 CACCTGAAATTAGGGGGAAGAGAT 59.833 45.833 0.00 0.00 42.35 2.75
2892 3232 3.523564 CACCTGAAATTAGGGGGAAGAGA 59.476 47.826 0.00 0.00 42.35 3.10
2893 3233 3.267031 ACACCTGAAATTAGGGGGAAGAG 59.733 47.826 1.59 0.00 45.91 2.85
2894 3234 3.010138 CACACCTGAAATTAGGGGGAAGA 59.990 47.826 1.59 0.00 45.91 2.87
2895 3235 3.245264 ACACACCTGAAATTAGGGGGAAG 60.245 47.826 1.59 0.00 45.91 3.46
2896 3236 2.719705 ACACACCTGAAATTAGGGGGAA 59.280 45.455 1.59 0.00 45.91 3.97
2897 3237 2.307686 GACACACCTGAAATTAGGGGGA 59.692 50.000 1.59 0.00 45.91 4.81
2898 3238 2.041081 TGACACACCTGAAATTAGGGGG 59.959 50.000 1.59 0.00 45.91 5.40
2900 3240 3.947834 GGATGACACACCTGAAATTAGGG 59.052 47.826 0.00 0.00 42.35 3.53
2901 3241 4.588899 TGGATGACACACCTGAAATTAGG 58.411 43.478 0.00 0.00 43.71 2.69
2902 3242 5.882000 TGATGGATGACACACCTGAAATTAG 59.118 40.000 2.83 0.00 0.00 1.73
2903 3243 5.814481 TGATGGATGACACACCTGAAATTA 58.186 37.500 2.83 0.00 0.00 1.40
2904 3244 4.665451 TGATGGATGACACACCTGAAATT 58.335 39.130 2.83 0.00 0.00 1.82
2905 3245 4.305539 TGATGGATGACACACCTGAAAT 57.694 40.909 2.83 0.00 0.00 2.17
2906 3246 3.786368 TGATGGATGACACACCTGAAA 57.214 42.857 2.83 0.00 0.00 2.69
2907 3247 3.263937 TCATGATGGATGACACACCTGAA 59.736 43.478 0.00 0.00 36.06 3.02
2908 3248 2.839425 TCATGATGGATGACACACCTGA 59.161 45.455 0.00 0.00 36.06 3.86
2909 3249 3.271055 TCATGATGGATGACACACCTG 57.729 47.619 0.00 0.00 36.06 4.00
2910 3250 3.816994 CATCATGATGGATGACACACCT 58.183 45.455 25.37 0.00 46.00 4.00
2922 3262 2.847441 CAGGTGAGACCCATCATGATG 58.153 52.381 25.97 25.97 39.75 3.07
2923 3263 1.142465 GCAGGTGAGACCCATCATGAT 59.858 52.381 1.18 1.18 39.75 2.45
2924 3264 0.543277 GCAGGTGAGACCCATCATGA 59.457 55.000 0.00 0.00 39.75 3.07
2925 3265 0.545171 AGCAGGTGAGACCCATCATG 59.455 55.000 0.00 0.00 39.75 3.07
2926 3266 2.171448 GTTAGCAGGTGAGACCCATCAT 59.829 50.000 0.00 0.00 39.75 2.45
2927 3267 1.555075 GTTAGCAGGTGAGACCCATCA 59.445 52.381 0.00 0.00 39.75 3.07
2928 3268 1.134371 GGTTAGCAGGTGAGACCCATC 60.134 57.143 0.00 0.00 39.75 3.51
2929 3269 0.912486 GGTTAGCAGGTGAGACCCAT 59.088 55.000 0.00 0.00 39.75 4.00
2930 3270 2.372852 GGTTAGCAGGTGAGACCCA 58.627 57.895 0.00 0.00 39.75 4.51
2931 3271 1.602771 GGGTTAGCAGGTGAGACCC 59.397 63.158 5.28 5.28 39.75 4.46
2932 3272 1.218316 CGGGTTAGCAGGTGAGACC 59.782 63.158 0.00 0.00 38.99 3.85
2933 3273 0.389948 CACGGGTTAGCAGGTGAGAC 60.390 60.000 0.00 0.00 32.23 3.36
2934 3274 0.541063 TCACGGGTTAGCAGGTGAGA 60.541 55.000 3.98 0.00 34.71 3.27
2935 3275 1.972198 TCACGGGTTAGCAGGTGAG 59.028 57.895 3.98 0.00 34.71 3.51
2936 3276 0.541063 TCTCACGGGTTAGCAGGTGA 60.541 55.000 7.19 7.19 37.77 4.02
2937 3277 0.389948 GTCTCACGGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
2938 3278 1.542187 GGTCTCACGGGTTAGCAGGT 61.542 60.000 0.00 0.00 0.00 4.00
2939 3279 1.218316 GGTCTCACGGGTTAGCAGG 59.782 63.158 0.00 0.00 0.00 4.85
2940 3280 0.108615 CAGGTCTCACGGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
2941 3281 1.541310 CCAGGTCTCACGGGTTAGCA 61.541 60.000 0.00 0.00 0.00 3.49
2942 3282 1.218316 CCAGGTCTCACGGGTTAGC 59.782 63.158 0.00 0.00 0.00 3.09
2943 3283 0.531200 GACCAGGTCTCACGGGTTAG 59.469 60.000 12.94 0.00 32.77 2.34
2944 3284 0.113776 AGACCAGGTCTCACGGGTTA 59.886 55.000 17.31 0.00 38.71 2.85
2945 3285 0.113776 TAGACCAGGTCTCACGGGTT 59.886 55.000 26.42 1.91 42.40 4.11
2946 3286 0.335361 ATAGACCAGGTCTCACGGGT 59.665 55.000 26.42 2.71 42.40 5.28
2947 3287 0.747255 CATAGACCAGGTCTCACGGG 59.253 60.000 26.42 8.27 42.40 5.28
2948 3288 0.103208 GCATAGACCAGGTCTCACGG 59.897 60.000 26.42 14.21 42.40 4.94
2949 3289 0.103208 GGCATAGACCAGGTCTCACG 59.897 60.000 26.42 15.76 42.40 4.35
2950 3290 0.466124 GGGCATAGACCAGGTCTCAC 59.534 60.000 26.42 15.56 42.40 3.51
2951 3291 0.339859 AGGGCATAGACCAGGTCTCA 59.660 55.000 26.42 12.66 42.40 3.27
2952 3292 1.044611 GAGGGCATAGACCAGGTCTC 58.955 60.000 26.42 11.72 42.40 3.36
2953 3293 0.399233 GGAGGGCATAGACCAGGTCT 60.399 60.000 25.92 25.92 45.54 3.85
2954 3294 0.691078 TGGAGGGCATAGACCAGGTC 60.691 60.000 12.25 12.25 29.21 3.85
2955 3295 0.983378 GTGGAGGGCATAGACCAGGT 60.983 60.000 0.00 0.00 29.21 4.00
2956 3296 1.832912 GTGGAGGGCATAGACCAGG 59.167 63.158 0.00 0.00 29.21 4.45
2957 3297 1.043116 TCGTGGAGGGCATAGACCAG 61.043 60.000 0.00 0.00 29.21 4.00
2958 3298 1.001120 TCGTGGAGGGCATAGACCA 59.999 57.895 0.00 0.00 29.21 4.02
2959 3299 1.043673 AGTCGTGGAGGGCATAGACC 61.044 60.000 0.00 0.00 0.00 3.85
2960 3300 0.824759 AAGTCGTGGAGGGCATAGAC 59.175 55.000 0.00 0.00 0.00 2.59
2961 3301 2.447408 TAAGTCGTGGAGGGCATAGA 57.553 50.000 0.00 0.00 0.00 1.98
2962 3302 3.536956 TTTAAGTCGTGGAGGGCATAG 57.463 47.619 0.00 0.00 0.00 2.23
2963 3303 4.497291 AATTTAAGTCGTGGAGGGCATA 57.503 40.909 0.00 0.00 0.00 3.14
2964 3304 3.366052 AATTTAAGTCGTGGAGGGCAT 57.634 42.857 0.00 0.00 0.00 4.40
2965 3305 2.871096 AATTTAAGTCGTGGAGGGCA 57.129 45.000 0.00 0.00 0.00 5.36
2966 3306 3.064958 GCTTAATTTAAGTCGTGGAGGGC 59.935 47.826 15.69 0.00 38.07 5.19
2967 3307 4.258543 TGCTTAATTTAAGTCGTGGAGGG 58.741 43.478 15.69 0.00 38.07 4.30
2968 3308 5.730568 GCATGCTTAATTTAAGTCGTGGAGG 60.731 44.000 11.37 5.27 38.07 4.30
2969 3309 5.163764 TGCATGCTTAATTTAAGTCGTGGAG 60.164 40.000 20.33 8.98 38.07 3.86
2970 3310 4.697828 TGCATGCTTAATTTAAGTCGTGGA 59.302 37.500 20.33 18.64 38.07 4.02
2971 3311 4.980590 TGCATGCTTAATTTAAGTCGTGG 58.019 39.130 20.33 10.32 38.07 4.94
3029 3511 2.878406 CGTTGTCTGTCCACTCCATTTT 59.122 45.455 0.00 0.00 0.00 1.82
3093 3575 5.820947 AGTGTTCATGGAAACTTTAACGAGT 59.179 36.000 0.00 0.00 0.00 4.18
3096 3578 7.112984 GCTAAAGTGTTCATGGAAACTTTAACG 59.887 37.037 23.97 16.80 41.85 3.18
3153 4145 3.574614 CTGGTTTGGAATAACGCCTTTG 58.425 45.455 0.00 0.00 0.00 2.77
3282 4274 8.090214 AGAAGTAAACATTCATTCACATTTGGG 58.910 33.333 0.00 0.00 0.00 4.12
3350 4342 9.463443 CTCAGTGTGATCGTTTATGTTGATATA 57.537 33.333 0.00 0.00 0.00 0.86
3372 4366 1.065926 TGGCCACATTCTAGTGCTCAG 60.066 52.381 0.00 0.00 38.18 3.35
3385 4379 0.251253 TGCATGATCTGTTGGCCACA 60.251 50.000 3.88 6.37 0.00 4.17
3429 4423 6.670077 AAGAACAGATCTAAGAAAATCCGC 57.330 37.500 0.00 0.00 37.42 5.54
3435 4429 6.153000 AGGAGCGTAAGAACAGATCTAAGAAA 59.847 38.462 0.00 0.00 37.42 2.52
3590 4584 7.064490 GTGTGTTTGGTTCTGAATTTTCAATGT 59.936 33.333 0.00 0.00 36.64 2.71
3630 4624 8.956426 GGATGTGTAATTGTTATGAAGAGGAAA 58.044 33.333 0.00 0.00 0.00 3.13
3676 4670 3.473625 ACGTTCGGGATTTATCATTCCC 58.526 45.455 0.00 0.00 46.96 3.97
3677 4671 4.318546 CGAACGTTCGGGATTTATCATTCC 60.319 45.833 36.53 2.36 46.30 3.01
3678 4672 4.758561 CGAACGTTCGGGATTTATCATTC 58.241 43.478 36.53 2.76 46.30 2.67
3679 4673 4.789095 CGAACGTTCGGGATTTATCATT 57.211 40.909 36.53 0.00 46.30 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.