Multiple sequence alignment - TraesCS3B01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G318500 chr3B 100.000 2870 0 0 1 2870 513530052 513532921 0.000000e+00 5301
1 TraesCS3B01G318500 chr3B 94.048 252 13 2 2615 2864 676953065 676953316 5.800000e-102 381
2 TraesCS3B01G318500 chr3D 93.103 812 42 7 155 962 393561343 393562144 0.000000e+00 1177
3 TraesCS3B01G318500 chr3D 91.971 548 31 5 1545 2092 393562411 393562945 0.000000e+00 756
4 TraesCS3B01G318500 chr3D 92.478 452 17 7 2173 2622 393562945 393563381 5.220000e-177 630
5 TraesCS3B01G318500 chr3D 95.473 243 11 0 2622 2864 532859512 532859754 3.470000e-104 388
6 TraesCS3B01G318500 chr3D 94.262 244 14 0 985 1228 393562133 393562376 9.710000e-100 374
7 TraesCS3B01G318500 chr3A 94.492 581 31 1 2042 2622 513540281 513540860 0.000000e+00 894
8 TraesCS3B01G318500 chr3A 87.411 699 35 20 3 673 513538480 513539153 0.000000e+00 754
9 TraesCS3B01G318500 chr3A 91.329 519 29 5 1541 2058 513539766 513540269 0.000000e+00 695
10 TraesCS3B01G318500 chr3A 98.940 283 3 0 1264 1546 37807802 37807520 9.180000e-140 507
11 TraesCS3B01G318500 chr3A 96.727 275 8 1 984 1258 513539488 513539761 9.370000e-125 457
12 TraesCS3B01G318500 chr3A 90.769 325 9 9 659 962 513539176 513539500 5.720000e-112 414
13 TraesCS3B01G318500 chr5A 99.286 280 2 0 1266 1545 151259435 151259714 9.180000e-140 507
14 TraesCS3B01G318500 chr2A 99.286 280 2 0 1265 1544 773800400 773800679 9.180000e-140 507
15 TraesCS3B01G318500 chr7B 98.936 282 3 0 1266 1547 388157452 388157171 3.300000e-139 505
16 TraesCS3B01G318500 chr6B 99.283 279 2 0 1266 1544 680301075 680300797 3.300000e-139 505
17 TraesCS3B01G318500 chr2B 99.283 279 2 0 1266 1544 81319070 81318792 3.300000e-139 505
18 TraesCS3B01G318500 chr2B 98.932 281 3 0 1262 1542 635083327 635083607 1.190000e-138 503
19 TraesCS3B01G318500 chr2B 96.296 243 9 0 2622 2864 141909509 141909751 1.600000e-107 399
20 TraesCS3B01G318500 chr2B 95.885 243 9 1 2622 2864 141870947 141871188 2.680000e-105 392
21 TraesCS3B01G318500 chr1B 98.252 286 5 0 1266 1551 418107241 418106956 4.270000e-138 501
22 TraesCS3B01G318500 chr4B 97.595 291 5 2 1255 1544 396520229 396520518 5.520000e-137 497
23 TraesCS3B01G318500 chr4A 94.615 260 12 2 2611 2870 743338501 743338758 4.450000e-108 401
24 TraesCS3B01G318500 chr7D 95.492 244 11 0 2621 2864 418729587 418729830 9.640000e-105 390
25 TraesCS3B01G318500 chr7D 94.737 247 12 1 2619 2864 120120676 120120922 1.610000e-102 383
26 TraesCS3B01G318500 chr2D 95.492 244 11 0 2621 2864 623790298 623790055 9.640000e-105 390
27 TraesCS3B01G318500 chr5D 93.774 257 15 1 2608 2864 441124473 441124218 4.490000e-103 385


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G318500 chr3B 513530052 513532921 2869 False 5301.00 5301 100.0000 1 2870 1 chr3B.!!$F1 2869
1 TraesCS3B01G318500 chr3D 393561343 393563381 2038 False 734.25 1177 92.9535 155 2622 4 chr3D.!!$F2 2467
2 TraesCS3B01G318500 chr3A 513538480 513540860 2380 False 642.80 894 92.1456 3 2622 5 chr3A.!!$F1 2619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 507 0.025001 CAAACTGAAGTATCGGCGCG 59.975 55.0 0.0 0.0 35.16 6.86 F
1285 1375 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.0 0.0 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1612 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.0 0.0 0.0 0.0 3.85 R
2786 2907 0.036388 TTAGGCCCAGACTTTCAGCG 60.036 55.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 125 1.404748 GGCCCGAGACTCTTGTACTAC 59.595 57.143 0.03 0.00 0.00 2.73
127 129 2.095532 CCGAGACTCTTGTACTACCGTG 59.904 54.545 0.03 0.00 0.00 4.94
128 130 2.740981 CGAGACTCTTGTACTACCGTGT 59.259 50.000 0.03 0.00 0.00 4.49
130 132 4.201666 CGAGACTCTTGTACTACCGTGTAC 60.202 50.000 0.03 0.00 42.10 2.90
131 133 3.681897 AGACTCTTGTACTACCGTGTACG 59.318 47.826 0.00 0.00 44.01 3.67
156 172 3.208747 AGATCAACGTGTCAAAGGGTT 57.791 42.857 0.00 0.00 0.00 4.11
188 204 4.216687 CGCTTTATCCTTTACACACCCAAA 59.783 41.667 0.00 0.00 0.00 3.28
195 211 1.528292 TTACACACCCAAATGCGGCC 61.528 55.000 0.00 0.00 0.00 6.13
222 238 3.200593 CTGCATCGGCTCAGTGGC 61.201 66.667 0.00 0.00 41.91 5.01
233 249 2.046988 CAGTGGCGGCAGACATGA 60.047 61.111 13.91 0.00 37.94 3.07
353 369 4.435253 CGAGAACAAGTTATCTGCAGCAAG 60.435 45.833 9.47 0.00 0.00 4.01
362 378 6.000219 AGTTATCTGCAGCAAGAGAAGAAAA 59.000 36.000 9.47 0.00 28.46 2.29
391 407 3.817647 GGTTGACTTTGCAAGAGTGATCT 59.182 43.478 15.84 0.00 0.00 2.75
451 477 2.019249 ACGATCGGGACAACGAAGATA 58.981 47.619 20.98 0.00 46.92 1.98
466 492 3.853671 CGAAGATACCTTTGCATGCAAAC 59.146 43.478 35.80 26.37 40.51 2.93
481 507 0.025001 CAAACTGAAGTATCGGCGCG 59.975 55.000 0.00 0.00 35.16 6.86
583 609 4.324563 CCAGGTATCCCAAGTGATGAAGTT 60.325 45.833 0.00 0.00 0.00 2.66
589 615 4.062293 TCCCAAGTGATGAAGTTAACACG 58.938 43.478 8.61 0.00 38.15 4.49
685 746 3.090037 GGCTCTATTAGATAGACGGCCA 58.910 50.000 16.96 0.00 45.47 5.36
766 850 2.024871 CGTCTGATCGGTCGAGCC 59.975 66.667 14.92 1.35 0.00 4.70
767 851 2.473760 CGTCTGATCGGTCGAGCCT 61.474 63.158 14.92 0.00 34.25 4.58
768 852 1.810532 GTCTGATCGGTCGAGCCTT 59.189 57.895 9.39 0.00 34.25 4.35
769 853 0.526524 GTCTGATCGGTCGAGCCTTG 60.527 60.000 9.39 0.00 34.25 3.61
770 854 1.880340 CTGATCGGTCGAGCCTTGC 60.880 63.158 9.39 0.00 34.25 4.01
771 855 2.586357 GATCGGTCGAGCCTTGCC 60.586 66.667 9.39 0.00 34.25 4.52
963 1053 6.183360 CCTTTGATCATTGTAGCAAGGTACTG 60.183 42.308 10.67 2.49 40.86 2.74
964 1054 4.191544 TGATCATTGTAGCAAGGTACTGC 58.808 43.478 10.36 0.00 40.86 4.40
965 1055 2.985896 TCATTGTAGCAAGGTACTGCC 58.014 47.619 10.36 0.00 40.86 4.85
974 1064 2.754648 AGGTACTGCCTCCGTTTCA 58.245 52.632 0.00 0.00 46.96 2.69
975 1065 1.053424 AGGTACTGCCTCCGTTTCAA 58.947 50.000 0.00 0.00 46.96 2.69
976 1066 1.418637 AGGTACTGCCTCCGTTTCAAA 59.581 47.619 0.00 0.00 46.96 2.69
977 1067 2.158726 AGGTACTGCCTCCGTTTCAAAA 60.159 45.455 0.00 0.00 46.96 2.44
978 1068 2.619646 GGTACTGCCTCCGTTTCAAAAA 59.380 45.455 0.00 0.00 0.00 1.94
1014 1104 1.667151 GACAATGGCTTTGCTGGCA 59.333 52.632 12.54 4.07 46.31 4.92
1188 1278 2.607187 CGCTACGTCAAGTCCAAGAAT 58.393 47.619 0.00 0.00 0.00 2.40
1261 1351 1.003545 CGGATCAAACCATCATGCGTC 60.004 52.381 0.00 0.00 0.00 5.19
1263 1353 3.466836 GGATCAAACCATCATGCGTCTA 58.533 45.455 0.00 0.00 0.00 2.59
1266 1356 4.729227 TCAAACCATCATGCGTCTACTA 57.271 40.909 0.00 0.00 0.00 1.82
1268 1358 5.109210 TCAAACCATCATGCGTCTACTAAG 58.891 41.667 0.00 0.00 0.00 2.18
1269 1359 3.735237 ACCATCATGCGTCTACTAAGG 57.265 47.619 0.00 0.00 0.00 2.69
1270 1360 2.224066 ACCATCATGCGTCTACTAAGGC 60.224 50.000 0.00 0.00 0.00 4.35
1271 1361 2.036475 CCATCATGCGTCTACTAAGGCT 59.964 50.000 0.00 0.00 0.00 4.58
1272 1362 2.871182 TCATGCGTCTACTAAGGCTG 57.129 50.000 0.00 0.00 0.00 4.85
1273 1363 1.409064 TCATGCGTCTACTAAGGCTGG 59.591 52.381 0.00 0.00 0.00 4.85
1274 1364 1.137086 CATGCGTCTACTAAGGCTGGT 59.863 52.381 0.00 0.00 0.00 4.00
1275 1365 0.815734 TGCGTCTACTAAGGCTGGTC 59.184 55.000 0.00 0.00 0.00 4.02
1276 1366 0.815734 GCGTCTACTAAGGCTGGTCA 59.184 55.000 0.00 0.00 0.00 4.02
1277 1367 1.409427 GCGTCTACTAAGGCTGGTCAT 59.591 52.381 0.00 0.00 0.00 3.06
1278 1368 2.621998 GCGTCTACTAAGGCTGGTCATA 59.378 50.000 0.00 0.00 0.00 2.15
1279 1369 3.304794 GCGTCTACTAAGGCTGGTCATAG 60.305 52.174 0.00 0.00 0.00 2.23
1280 1370 3.884091 CGTCTACTAAGGCTGGTCATAGT 59.116 47.826 1.78 1.78 33.45 2.12
1281 1371 4.261238 CGTCTACTAAGGCTGGTCATAGTG 60.261 50.000 6.16 0.00 31.46 2.74
1282 1372 4.038162 GTCTACTAAGGCTGGTCATAGTGG 59.962 50.000 6.16 3.78 31.46 4.00
1283 1373 2.119495 ACTAAGGCTGGTCATAGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
1284 1374 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
1285 1375 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
1286 1376 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
1287 1377 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
1288 1378 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
1289 1379 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
1290 1380 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
1291 1381 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
1292 1382 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
1293 1383 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
1294 1384 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
1295 1385 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
1296 1386 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
1297 1387 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
1298 1388 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
1299 1389 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
1300 1390 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
1301 1391 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
1302 1392 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
1303 1393 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
1304 1394 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
1305 1395 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
1306 1396 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
1307 1397 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
1308 1398 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
1337 1427 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
1343 1433 8.466617 AGTCTATGTTACTACCTTCATACTGG 57.533 38.462 0.00 0.00 0.00 4.00
1344 1434 7.506261 AGTCTATGTTACTACCTTCATACTGGG 59.494 40.741 0.00 0.00 0.00 4.45
1345 1435 4.748277 TGTTACTACCTTCATACTGGGC 57.252 45.455 0.00 0.00 0.00 5.36
1346 1436 4.098155 TGTTACTACCTTCATACTGGGCA 58.902 43.478 0.00 0.00 0.00 5.36
1347 1437 4.161565 TGTTACTACCTTCATACTGGGCAG 59.838 45.833 0.00 0.00 0.00 4.85
1348 1438 2.834113 ACTACCTTCATACTGGGCAGT 58.166 47.619 0.00 0.00 45.02 4.40
1349 1439 2.501723 ACTACCTTCATACTGGGCAGTG 59.498 50.000 0.00 0.00 42.52 3.66
1350 1440 1.362224 ACCTTCATACTGGGCAGTGT 58.638 50.000 0.00 0.00 42.52 3.55
1351 1441 1.279271 ACCTTCATACTGGGCAGTGTC 59.721 52.381 0.00 0.00 42.52 3.67
1352 1442 1.278985 CCTTCATACTGGGCAGTGTCA 59.721 52.381 0.00 0.00 42.52 3.58
1353 1443 2.092753 CCTTCATACTGGGCAGTGTCAT 60.093 50.000 0.00 0.00 42.52 3.06
1354 1444 3.134623 CCTTCATACTGGGCAGTGTCATA 59.865 47.826 0.00 0.00 42.52 2.15
1355 1445 4.375272 CTTCATACTGGGCAGTGTCATAG 58.625 47.826 0.00 0.00 42.52 2.23
1356 1446 2.700371 TCATACTGGGCAGTGTCATAGG 59.300 50.000 0.00 0.00 42.52 2.57
1357 1447 2.247699 TACTGGGCAGTGTCATAGGT 57.752 50.000 0.00 0.00 42.52 3.08
1358 1448 0.615331 ACTGGGCAGTGTCATAGGTG 59.385 55.000 0.00 0.00 40.75 4.00
1359 1449 0.615331 CTGGGCAGTGTCATAGGTGT 59.385 55.000 0.00 0.00 0.00 4.16
1360 1450 0.324614 TGGGCAGTGTCATAGGTGTG 59.675 55.000 0.00 0.00 0.00 3.82
1361 1451 0.392998 GGGCAGTGTCATAGGTGTGG 60.393 60.000 0.00 0.00 0.00 4.17
1362 1452 0.324943 GGCAGTGTCATAGGTGTGGT 59.675 55.000 0.00 0.00 0.00 4.16
1363 1453 1.553248 GGCAGTGTCATAGGTGTGGTA 59.447 52.381 0.00 0.00 0.00 3.25
1364 1454 2.027561 GGCAGTGTCATAGGTGTGGTAA 60.028 50.000 0.00 0.00 0.00 2.85
1365 1455 3.000727 GCAGTGTCATAGGTGTGGTAAC 58.999 50.000 0.00 0.00 0.00 2.50
1384 1474 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
1385 1475 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
1386 1476 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
1394 1484 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
1395 1485 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
1396 1486 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
1397 1487 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
1398 1488 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
1409 1499 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
1410 1500 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
1411 1501 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
1412 1502 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
1413 1503 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
1414 1504 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
1415 1505 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
1416 1506 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
1417 1507 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
1418 1508 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
1419 1509 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
1420 1510 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
1421 1511 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
1422 1512 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
1423 1513 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
1424 1514 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
1425 1515 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
1426 1516 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
1427 1517 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
1428 1518 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
1429 1519 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
1430 1520 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
1459 1549 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
1460 1550 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
1461 1551 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
1462 1552 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
1463 1553 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
1464 1554 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
1465 1555 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
1466 1556 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
1467 1557 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
1468 1558 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
1469 1559 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
1470 1560 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
1471 1561 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
1472 1562 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
1473 1563 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
1474 1564 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
1475 1565 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
1476 1566 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
1477 1567 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
1478 1568 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
1479 1569 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
1480 1570 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
1481 1571 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
1482 1572 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
1483 1573 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
1484 1574 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
1485 1575 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
1486 1576 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
1487 1577 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
1488 1578 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
1489 1579 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
1490 1580 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
1491 1581 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
1492 1582 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
1493 1583 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
1494 1584 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
1495 1585 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
1496 1586 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
1497 1587 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
1498 1588 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
1499 1589 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
1500 1590 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
1501 1591 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
1502 1592 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
1503 1593 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
1504 1594 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
1505 1595 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
1506 1596 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
1507 1597 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
1508 1598 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
1509 1599 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
1510 1600 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
1511 1601 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
1512 1602 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
1513 1603 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
1514 1604 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
1515 1605 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
1516 1606 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
1517 1607 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
1518 1608 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
1519 1609 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
1520 1610 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
1521 1611 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
1522 1612 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
1523 1613 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
1524 1614 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
1525 1615 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
1527 1617 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
1528 1618 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
1529 1619 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
1530 1620 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
1531 1621 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
1532 1622 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
1533 1623 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
1534 1624 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
1535 1625 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
1536 1626 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
1537 1627 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
1538 1628 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
1539 1629 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
1550 1640 0.179018 ATGACCAGCCTAATTCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
1575 1665 0.251698 TTTGTCATGCAGATGCCCCA 60.252 50.000 1.72 0.00 41.18 4.96
1716 1806 2.738480 GTGTACGTGCTGGGGTCA 59.262 61.111 4.97 0.00 0.00 4.02
1797 1887 2.168621 CGCAAGTTCGTGACGCTG 59.831 61.111 0.00 0.00 0.00 5.18
1799 1889 2.881266 GCAAGTTCGTGACGCTGCA 61.881 57.895 0.00 0.00 39.98 4.41
1845 1935 1.138883 CGGCGACTTCATCTTCGGA 59.861 57.895 0.00 0.00 35.73 4.55
1860 1950 3.327404 GGACCCAAGAAGCCCGGA 61.327 66.667 0.73 0.00 0.00 5.14
1863 1953 0.538746 GACCCAAGAAGCCCGGAAAA 60.539 55.000 0.73 0.00 0.00 2.29
1876 1966 1.134946 CCGGAAAATGCTGATTGGTCC 59.865 52.381 0.00 0.00 0.00 4.46
1887 1977 3.507233 GCTGATTGGTCCATCAAGTTTGA 59.493 43.478 0.00 0.00 42.14 2.69
1889 1979 4.728772 TGATTGGTCCATCAAGTTTGAGT 58.271 39.130 0.00 0.00 41.08 3.41
1923 2013 4.337060 CACACGCGGTGTCTCGGA 62.337 66.667 12.47 0.00 43.92 4.55
1924 2014 4.039357 ACACGCGGTGTCTCGGAG 62.039 66.667 12.47 0.00 43.92 4.63
1925 2015 3.733960 CACGCGGTGTCTCGGAGA 61.734 66.667 12.47 2.97 0.00 3.71
1959 2049 8.928270 ACTACTGATGTTTTATACAGTACAGC 57.072 34.615 0.00 0.00 42.39 4.40
1960 2050 8.528643 ACTACTGATGTTTTATACAGTACAGCA 58.471 33.333 0.00 0.00 42.39 4.41
2096 2215 9.660180 TTAGTGCATGTCATATAAACTACACAA 57.340 29.630 0.00 0.00 0.00 3.33
2139 2258 8.393395 TGCGAGCAATTATTTTTCAGAAATAC 57.607 30.769 0.00 0.00 0.00 1.89
2170 2289 9.567776 TTTCACCGTTGGATATAATGTATCAAT 57.432 29.630 0.00 0.00 0.00 2.57
2222 2343 3.329929 AAACGGTCCGAGCTAGAAAAT 57.670 42.857 20.51 0.00 0.00 1.82
2263 2384 8.729805 AAGTTGCTTTTGGAAAATATTTGTCA 57.270 26.923 0.39 0.81 0.00 3.58
2269 2390 9.780413 GCTTTTGGAAAATATTTGTCAAAACAA 57.220 25.926 23.54 13.26 43.58 2.83
2291 2412 7.118723 ACAAGCCCATGTGAGATCTAATTTTA 58.881 34.615 0.00 0.00 30.82 1.52
2418 2539 8.238481 AGAAACACAACAGTAACACATTTTTG 57.762 30.769 0.00 0.00 0.00 2.44
2474 2595 6.253727 CGTCGTCCATTTGGCTCTATATAATC 59.746 42.308 0.00 0.00 34.44 1.75
2579 2700 5.460646 CCATAATCAAACCATAACGCCATC 58.539 41.667 0.00 0.00 0.00 3.51
2622 2743 7.015877 CCCCATCCATGAATCATGTTATTCTTT 59.984 37.037 20.39 0.00 39.94 2.52
2623 2744 8.426489 CCCATCCATGAATCATGTTATTCTTTT 58.574 33.333 20.39 0.00 39.94 2.27
2624 2745 9.826574 CCATCCATGAATCATGTTATTCTTTTT 57.173 29.630 20.39 0.00 39.94 1.94
2646 2767 4.652679 TTTTAGAAAAGGAGGAGGACCC 57.347 45.455 0.00 0.00 36.73 4.46
2647 2768 2.265526 TAGAAAAGGAGGAGGACCCC 57.734 55.000 0.00 0.00 36.73 4.95
2648 2769 0.550393 AGAAAAGGAGGAGGACCCCC 60.550 60.000 0.00 0.00 36.73 5.40
2649 2770 1.911702 GAAAAGGAGGAGGACCCCCG 61.912 65.000 0.00 0.00 37.58 5.73
2650 2771 3.945064 AAAGGAGGAGGACCCCCGG 62.945 68.421 0.00 0.00 37.58 5.73
2662 2783 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2663 2784 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2664 2785 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
2665 2786 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
2666 2787 2.993008 GGCCTCTGCATCTGGACA 59.007 61.111 0.00 0.00 40.13 4.02
2667 2788 1.300963 GGCCTCTGCATCTGGACAA 59.699 57.895 0.00 0.00 40.13 3.18
2668 2789 0.106819 GGCCTCTGCATCTGGACAAT 60.107 55.000 0.00 0.00 40.13 2.71
2669 2790 1.022735 GCCTCTGCATCTGGACAATG 58.977 55.000 4.26 0.00 37.47 2.82
2675 2796 2.675767 GCATCTGGACAATGCATACG 57.324 50.000 0.00 0.00 46.93 3.06
2676 2797 1.265095 GCATCTGGACAATGCATACGG 59.735 52.381 0.00 0.00 46.93 4.02
2677 2798 2.564771 CATCTGGACAATGCATACGGT 58.435 47.619 0.00 0.00 0.00 4.83
2678 2799 2.309528 TCTGGACAATGCATACGGTC 57.690 50.000 14.42 14.42 0.00 4.79
2679 2800 1.552792 TCTGGACAATGCATACGGTCA 59.447 47.619 20.79 8.29 32.00 4.02
2680 2801 2.170397 TCTGGACAATGCATACGGTCAT 59.830 45.455 20.79 0.00 32.00 3.06
2681 2802 2.945008 CTGGACAATGCATACGGTCATT 59.055 45.455 20.79 0.00 33.56 2.57
2682 2803 3.351740 TGGACAATGCATACGGTCATTT 58.648 40.909 20.79 0.00 31.15 2.32
2683 2804 3.761218 TGGACAATGCATACGGTCATTTT 59.239 39.130 20.79 0.00 31.15 1.82
2684 2805 4.944317 TGGACAATGCATACGGTCATTTTA 59.056 37.500 20.79 5.74 31.15 1.52
2685 2806 5.592282 TGGACAATGCATACGGTCATTTTAT 59.408 36.000 20.79 0.00 31.15 1.40
2686 2807 6.096141 TGGACAATGCATACGGTCATTTTATT 59.904 34.615 20.79 0.00 31.15 1.40
2687 2808 7.283354 TGGACAATGCATACGGTCATTTTATTA 59.717 33.333 20.79 2.36 31.15 0.98
2688 2809 8.132362 GGACAATGCATACGGTCATTTTATTAA 58.868 33.333 20.79 0.00 31.15 1.40
2689 2810 9.677567 GACAATGCATACGGTCATTTTATTAAT 57.322 29.630 16.71 0.00 31.15 1.40
2713 2834 8.691661 ATTATTGACACAAGACCTTACAAAGT 57.308 30.769 0.00 0.00 0.00 2.66
2714 2835 6.619801 ATTGACACAAGACCTTACAAAGTC 57.380 37.500 0.00 0.00 0.00 3.01
2715 2836 5.092554 TGACACAAGACCTTACAAAGTCA 57.907 39.130 0.00 0.00 0.00 3.41
2716 2837 5.680619 TGACACAAGACCTTACAAAGTCAT 58.319 37.500 0.00 0.00 0.00 3.06
2717 2838 6.822442 TGACACAAGACCTTACAAAGTCATA 58.178 36.000 0.00 0.00 0.00 2.15
2718 2839 6.704493 TGACACAAGACCTTACAAAGTCATAC 59.296 38.462 0.00 0.00 0.00 2.39
2719 2840 6.588204 ACACAAGACCTTACAAAGTCATACA 58.412 36.000 0.00 0.00 0.00 2.29
2720 2841 7.051623 ACACAAGACCTTACAAAGTCATACAA 58.948 34.615 0.00 0.00 0.00 2.41
2721 2842 7.012044 ACACAAGACCTTACAAAGTCATACAAC 59.988 37.037 0.00 0.00 0.00 3.32
2722 2843 7.011950 CACAAGACCTTACAAAGTCATACAACA 59.988 37.037 0.00 0.00 0.00 3.33
2723 2844 7.554835 ACAAGACCTTACAAAGTCATACAACAA 59.445 33.333 0.00 0.00 0.00 2.83
2724 2845 8.567948 CAAGACCTTACAAAGTCATACAACAAT 58.432 33.333 0.00 0.00 0.00 2.71
2725 2846 9.787435 AAGACCTTACAAAGTCATACAACAATA 57.213 29.630 0.00 0.00 0.00 1.90
2726 2847 9.787435 AGACCTTACAAAGTCATACAACAATAA 57.213 29.630 0.00 0.00 0.00 1.40
2728 2849 9.569122 ACCTTACAAAGTCATACAACAATAAGT 57.431 29.630 0.00 0.00 0.00 2.24
2732 2853 8.902540 ACAAAGTCATACAACAATAAGTCTGA 57.097 30.769 0.00 0.00 0.00 3.27
2733 2854 9.337396 ACAAAGTCATACAACAATAAGTCTGAA 57.663 29.630 0.00 0.00 0.00 3.02
2734 2855 9.817365 CAAAGTCATACAACAATAAGTCTGAAG 57.183 33.333 0.00 0.00 0.00 3.02
2735 2856 7.602517 AGTCATACAACAATAAGTCTGAAGC 57.397 36.000 0.00 0.00 0.00 3.86
2736 2857 6.595716 AGTCATACAACAATAAGTCTGAAGCC 59.404 38.462 0.00 0.00 0.00 4.35
2737 2858 6.371548 GTCATACAACAATAAGTCTGAAGCCA 59.628 38.462 0.00 0.00 0.00 4.75
2738 2859 6.371548 TCATACAACAATAAGTCTGAAGCCAC 59.628 38.462 0.00 0.00 0.00 5.01
2739 2860 3.821033 ACAACAATAAGTCTGAAGCCACC 59.179 43.478 0.00 0.00 0.00 4.61
2740 2861 3.788227 ACAATAAGTCTGAAGCCACCA 57.212 42.857 0.00 0.00 0.00 4.17
2741 2862 4.098914 ACAATAAGTCTGAAGCCACCAA 57.901 40.909 0.00 0.00 0.00 3.67
2742 2863 4.469657 ACAATAAGTCTGAAGCCACCAAA 58.530 39.130 0.00 0.00 0.00 3.28
2743 2864 4.278419 ACAATAAGTCTGAAGCCACCAAAC 59.722 41.667 0.00 0.00 0.00 2.93
2744 2865 2.435372 AAGTCTGAAGCCACCAAACA 57.565 45.000 0.00 0.00 0.00 2.83
2745 2866 2.435372 AGTCTGAAGCCACCAAACAA 57.565 45.000 0.00 0.00 0.00 2.83
2746 2867 2.733956 AGTCTGAAGCCACCAAACAAA 58.266 42.857 0.00 0.00 0.00 2.83
2747 2868 2.689983 AGTCTGAAGCCACCAAACAAAG 59.310 45.455 0.00 0.00 0.00 2.77
2748 2869 1.408702 TCTGAAGCCACCAAACAAAGC 59.591 47.619 0.00 0.00 0.00 3.51
2749 2870 1.136695 CTGAAGCCACCAAACAAAGCA 59.863 47.619 0.00 0.00 0.00 3.91
2750 2871 1.552337 TGAAGCCACCAAACAAAGCAA 59.448 42.857 0.00 0.00 0.00 3.91
2751 2872 1.933181 GAAGCCACCAAACAAAGCAAC 59.067 47.619 0.00 0.00 0.00 4.17
2752 2873 0.901124 AGCCACCAAACAAAGCAACA 59.099 45.000 0.00 0.00 0.00 3.33
2753 2874 1.485895 AGCCACCAAACAAAGCAACAT 59.514 42.857 0.00 0.00 0.00 2.71
2754 2875 1.866601 GCCACCAAACAAAGCAACATC 59.133 47.619 0.00 0.00 0.00 3.06
2755 2876 2.483538 GCCACCAAACAAAGCAACATCT 60.484 45.455 0.00 0.00 0.00 2.90
2756 2877 3.125316 CCACCAAACAAAGCAACATCTG 58.875 45.455 0.00 0.00 0.00 2.90
2757 2878 3.430651 CCACCAAACAAAGCAACATCTGT 60.431 43.478 0.00 0.00 0.00 3.41
2758 2879 3.798337 CACCAAACAAAGCAACATCTGTC 59.202 43.478 0.00 0.00 0.00 3.51
2759 2880 3.044986 CCAAACAAAGCAACATCTGTCG 58.955 45.455 0.00 0.00 0.00 4.35
2760 2881 2.405892 AACAAAGCAACATCTGTCGC 57.594 45.000 0.00 0.00 0.00 5.19
2761 2882 1.597742 ACAAAGCAACATCTGTCGCT 58.402 45.000 0.00 0.00 35.90 4.93
2762 2883 2.766313 ACAAAGCAACATCTGTCGCTA 58.234 42.857 0.00 0.00 33.45 4.26
2763 2884 3.138304 ACAAAGCAACATCTGTCGCTAA 58.862 40.909 0.00 0.00 33.45 3.09
2764 2885 3.058914 ACAAAGCAACATCTGTCGCTAAC 60.059 43.478 0.00 0.00 33.45 2.34
2765 2886 1.726853 AGCAACATCTGTCGCTAACC 58.273 50.000 0.00 0.00 31.60 2.85
2766 2887 0.727398 GCAACATCTGTCGCTAACCC 59.273 55.000 0.00 0.00 0.00 4.11
2767 2888 1.676014 GCAACATCTGTCGCTAACCCT 60.676 52.381 0.00 0.00 0.00 4.34
2768 2889 2.418197 GCAACATCTGTCGCTAACCCTA 60.418 50.000 0.00 0.00 0.00 3.53
2769 2890 3.741388 GCAACATCTGTCGCTAACCCTAT 60.741 47.826 0.00 0.00 0.00 2.57
2770 2891 4.051922 CAACATCTGTCGCTAACCCTATC 58.948 47.826 0.00 0.00 0.00 2.08
2771 2892 2.628657 ACATCTGTCGCTAACCCTATCC 59.371 50.000 0.00 0.00 0.00 2.59
2772 2893 2.447408 TCTGTCGCTAACCCTATCCA 57.553 50.000 0.00 0.00 0.00 3.41
2773 2894 2.307768 TCTGTCGCTAACCCTATCCAG 58.692 52.381 0.00 0.00 0.00 3.86
2774 2895 2.032620 CTGTCGCTAACCCTATCCAGT 58.967 52.381 0.00 0.00 0.00 4.00
2775 2896 2.431057 CTGTCGCTAACCCTATCCAGTT 59.569 50.000 0.00 0.00 0.00 3.16
2776 2897 2.167693 TGTCGCTAACCCTATCCAGTTG 59.832 50.000 0.00 0.00 0.00 3.16
2777 2898 2.429610 GTCGCTAACCCTATCCAGTTGA 59.570 50.000 0.00 0.00 0.00 3.18
2778 2899 3.069729 GTCGCTAACCCTATCCAGTTGAT 59.930 47.826 0.00 0.00 37.49 2.57
2779 2900 3.069586 TCGCTAACCCTATCCAGTTGATG 59.930 47.826 0.00 0.00 34.76 3.07
2780 2901 3.181465 CGCTAACCCTATCCAGTTGATGT 60.181 47.826 0.00 0.00 34.76 3.06
2781 2902 4.038763 CGCTAACCCTATCCAGTTGATGTA 59.961 45.833 0.00 0.00 34.76 2.29
2782 2903 5.542779 GCTAACCCTATCCAGTTGATGTAG 58.457 45.833 0.00 0.00 34.76 2.74
2783 2904 5.511545 GCTAACCCTATCCAGTTGATGTAGG 60.512 48.000 0.00 0.00 34.76 3.18
2785 2906 2.639839 CCCTATCCAGTTGATGTAGGGG 59.360 54.545 7.71 0.00 42.40 4.79
2786 2907 2.039084 CCTATCCAGTTGATGTAGGGGC 59.961 54.545 0.00 0.00 34.76 5.80
2787 2908 0.469917 ATCCAGTTGATGTAGGGGCG 59.530 55.000 0.00 0.00 30.54 6.13
2788 2909 1.819632 CCAGTTGATGTAGGGGCGC 60.820 63.158 0.00 0.00 0.00 6.53
2789 2910 1.221840 CAGTTGATGTAGGGGCGCT 59.778 57.895 7.64 9.68 0.00 5.92
2790 2911 1.091771 CAGTTGATGTAGGGGCGCTG 61.092 60.000 15.11 0.00 0.00 5.18
2791 2912 1.220749 GTTGATGTAGGGGCGCTGA 59.779 57.895 15.11 0.63 0.00 4.26
2792 2913 0.392461 GTTGATGTAGGGGCGCTGAA 60.392 55.000 15.11 2.23 0.00 3.02
2793 2914 0.326595 TTGATGTAGGGGCGCTGAAA 59.673 50.000 15.11 0.00 0.00 2.69
2794 2915 0.107703 TGATGTAGGGGCGCTGAAAG 60.108 55.000 15.11 0.00 0.00 2.62
2795 2916 0.107654 GATGTAGGGGCGCTGAAAGT 60.108 55.000 15.11 0.00 35.30 2.66
2796 2917 0.107654 ATGTAGGGGCGCTGAAAGTC 60.108 55.000 15.11 0.00 35.30 3.01
2797 2918 1.192146 TGTAGGGGCGCTGAAAGTCT 61.192 55.000 15.11 0.00 35.30 3.24
2798 2919 0.741221 GTAGGGGCGCTGAAAGTCTG 60.741 60.000 15.11 0.00 35.30 3.51
2799 2920 1.899437 TAGGGGCGCTGAAAGTCTGG 61.899 60.000 15.11 0.00 35.30 3.86
2800 2921 2.747855 GGGCGCTGAAAGTCTGGG 60.748 66.667 7.64 0.00 35.30 4.45
2802 2923 3.435186 GCGCTGAAAGTCTGGGCC 61.435 66.667 0.00 0.00 44.44 5.80
2803 2924 2.348998 CGCTGAAAGTCTGGGCCT 59.651 61.111 4.53 0.00 35.30 5.19
2804 2925 1.596934 CGCTGAAAGTCTGGGCCTA 59.403 57.895 4.53 0.00 35.30 3.93
2805 2926 0.036388 CGCTGAAAGTCTGGGCCTAA 60.036 55.000 4.53 0.00 35.30 2.69
2806 2927 1.407437 CGCTGAAAGTCTGGGCCTAAT 60.407 52.381 4.53 0.00 35.30 1.73
2807 2928 2.158957 CGCTGAAAGTCTGGGCCTAATA 60.159 50.000 4.53 0.00 35.30 0.98
2808 2929 3.206964 GCTGAAAGTCTGGGCCTAATAC 58.793 50.000 4.53 0.00 35.30 1.89
2809 2930 3.809905 CTGAAAGTCTGGGCCTAATACC 58.190 50.000 4.53 0.00 0.00 2.73
2810 2931 3.186283 TGAAAGTCTGGGCCTAATACCA 58.814 45.455 4.53 0.00 35.05 3.25
2811 2932 3.589735 TGAAAGTCTGGGCCTAATACCAA 59.410 43.478 4.53 0.00 36.09 3.67
2812 2933 4.043561 TGAAAGTCTGGGCCTAATACCAAA 59.956 41.667 4.53 0.00 36.09 3.28
2813 2934 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
2814 2935 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
2815 2936 3.054361 AGTCTGGGCCTAATACCAAACAG 60.054 47.826 4.53 0.00 36.09 3.16
2816 2937 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
2817 2938 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
2818 2939 2.025699 TGGGCCTAATACCAAACAGACC 60.026 50.000 4.53 0.00 32.89 3.85
2819 2940 2.025699 GGGCCTAATACCAAACAGACCA 60.026 50.000 0.84 0.00 0.00 4.02
2820 2941 3.014623 GGCCTAATACCAAACAGACCAC 58.985 50.000 0.00 0.00 0.00 4.16
2821 2942 2.676342 GCCTAATACCAAACAGACCACG 59.324 50.000 0.00 0.00 0.00 4.94
2822 2943 2.676342 CCTAATACCAAACAGACCACGC 59.324 50.000 0.00 0.00 0.00 5.34
2823 2944 2.264005 AATACCAAACAGACCACGCA 57.736 45.000 0.00 0.00 0.00 5.24
2824 2945 1.808411 ATACCAAACAGACCACGCAG 58.192 50.000 0.00 0.00 0.00 5.18
2825 2946 0.882927 TACCAAACAGACCACGCAGC 60.883 55.000 0.00 0.00 0.00 5.25
2826 2947 2.639286 CAAACAGACCACGCAGCC 59.361 61.111 0.00 0.00 0.00 4.85
2827 2948 2.186160 CAAACAGACCACGCAGCCA 61.186 57.895 0.00 0.00 0.00 4.75
2828 2949 1.453015 AAACAGACCACGCAGCCAA 60.453 52.632 0.00 0.00 0.00 4.52
2829 2950 1.034838 AAACAGACCACGCAGCCAAA 61.035 50.000 0.00 0.00 0.00 3.28
2830 2951 1.724582 AACAGACCACGCAGCCAAAC 61.725 55.000 0.00 0.00 0.00 2.93
2831 2952 2.594592 AGACCACGCAGCCAAACC 60.595 61.111 0.00 0.00 0.00 3.27
2832 2953 2.594592 GACCACGCAGCCAAACCT 60.595 61.111 0.00 0.00 0.00 3.50
2833 2954 1.302192 GACCACGCAGCCAAACCTA 60.302 57.895 0.00 0.00 0.00 3.08
2834 2955 0.887387 GACCACGCAGCCAAACCTAA 60.887 55.000 0.00 0.00 0.00 2.69
2835 2956 1.170290 ACCACGCAGCCAAACCTAAC 61.170 55.000 0.00 0.00 0.00 2.34
2836 2957 1.169661 CCACGCAGCCAAACCTAACA 61.170 55.000 0.00 0.00 0.00 2.41
2837 2958 0.881118 CACGCAGCCAAACCTAACAT 59.119 50.000 0.00 0.00 0.00 2.71
2838 2959 1.135689 CACGCAGCCAAACCTAACATC 60.136 52.381 0.00 0.00 0.00 3.06
2839 2960 1.271379 ACGCAGCCAAACCTAACATCT 60.271 47.619 0.00 0.00 0.00 2.90
2840 2961 2.027561 ACGCAGCCAAACCTAACATCTA 60.028 45.455 0.00 0.00 0.00 1.98
2841 2962 3.006940 CGCAGCCAAACCTAACATCTAA 58.993 45.455 0.00 0.00 0.00 2.10
2842 2963 3.063997 CGCAGCCAAACCTAACATCTAAG 59.936 47.826 0.00 0.00 0.00 2.18
2843 2964 4.261801 GCAGCCAAACCTAACATCTAAGA 58.738 43.478 0.00 0.00 0.00 2.10
2844 2965 4.095036 GCAGCCAAACCTAACATCTAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
2845 2966 5.491982 CAGCCAAACCTAACATCTAAGACT 58.508 41.667 0.00 0.00 0.00 3.24
2846 2967 5.940470 CAGCCAAACCTAACATCTAAGACTT 59.060 40.000 0.00 0.00 0.00 3.01
2847 2968 5.940470 AGCCAAACCTAACATCTAAGACTTG 59.060 40.000 0.00 0.00 0.00 3.16
2848 2969 5.938125 GCCAAACCTAACATCTAAGACTTGA 59.062 40.000 0.00 0.00 0.00 3.02
2849 2970 6.092807 GCCAAACCTAACATCTAAGACTTGAG 59.907 42.308 0.00 0.00 0.00 3.02
2850 2971 6.595716 CCAAACCTAACATCTAAGACTTGAGG 59.404 42.308 0.00 0.00 0.00 3.86
2851 2972 6.936968 AACCTAACATCTAAGACTTGAGGT 57.063 37.500 0.00 0.00 36.34 3.85
2852 2973 6.532988 ACCTAACATCTAAGACTTGAGGTC 57.467 41.667 0.00 0.00 44.80 3.85
2853 2974 5.422650 ACCTAACATCTAAGACTTGAGGTCC 59.577 44.000 0.00 0.00 45.54 4.46
2854 2975 4.828072 AACATCTAAGACTTGAGGTCCC 57.172 45.455 0.00 0.00 45.54 4.46
2855 2976 3.791320 ACATCTAAGACTTGAGGTCCCA 58.209 45.455 0.00 0.00 45.54 4.37
2856 2977 4.168101 ACATCTAAGACTTGAGGTCCCAA 58.832 43.478 0.00 0.00 45.54 4.12
2857 2978 4.020128 ACATCTAAGACTTGAGGTCCCAAC 60.020 45.833 0.00 0.00 45.54 3.77
2858 2979 2.904434 TCTAAGACTTGAGGTCCCAACC 59.096 50.000 0.00 0.00 45.54 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 2.740981 ACACGGTAGTACAAGAGTCTCG 59.259 50.000 2.06 0.00 0.00 4.04
127 129 3.174375 GACACGTTGATCTAACCCGTAC 58.826 50.000 0.00 0.00 35.84 3.67
128 130 2.819019 TGACACGTTGATCTAACCCGTA 59.181 45.455 0.00 0.00 35.84 4.02
130 132 2.357327 TGACACGTTGATCTAACCCG 57.643 50.000 0.00 0.00 35.84 5.28
131 133 3.435671 CCTTTGACACGTTGATCTAACCC 59.564 47.826 0.00 0.00 35.84 4.11
134 136 4.345859 ACCCTTTGACACGTTGATCTAA 57.654 40.909 0.00 0.00 0.00 2.10
156 172 5.998981 TGTAAAGGATAAAGCGGAAAGTTGA 59.001 36.000 0.00 0.00 0.00 3.18
188 204 3.211963 GCAATCGAAGGGCCGCAT 61.212 61.111 0.00 0.00 0.00 4.73
222 238 1.086067 ATTCGCTGTCATGTCTGCCG 61.086 55.000 14.24 10.31 0.00 5.69
233 249 5.451908 CACTGTCATTTGTTAATTCGCTGT 58.548 37.500 0.00 0.00 0.00 4.40
328 344 4.174009 GCTGCAGATAACTTGTTCTCGTA 58.826 43.478 20.43 0.00 0.00 3.43
353 369 3.057245 GTCAACCCCAGCATTTTCTTCTC 60.057 47.826 0.00 0.00 0.00 2.87
362 378 0.469705 TGCAAAGTCAACCCCAGCAT 60.470 50.000 0.00 0.00 0.00 3.79
391 407 0.680601 TATCGCCGCCCCACGATATA 60.681 55.000 1.29 0.00 46.50 0.86
413 429 3.732212 TCGTTGGATCTATGGCTTCATG 58.268 45.455 0.00 0.00 32.59 3.07
424 440 1.134788 GTTGTCCCGATCGTTGGATCT 60.135 52.381 15.09 0.00 45.66 2.75
437 453 2.418976 GCAAAGGTATCTTCGTTGTCCC 59.581 50.000 0.00 0.00 31.82 4.46
451 477 2.431782 ACTTCAGTTTGCATGCAAAGGT 59.568 40.909 38.93 28.08 45.16 3.50
466 492 3.330853 GGCGCGCCGATACTTCAG 61.331 66.667 37.24 0.00 0.00 3.02
481 507 0.316204 ATGCACAGAACAGCAAAGGC 59.684 50.000 0.00 0.00 44.88 4.35
491 517 1.300971 GCGCTGGAAGATGCACAGAA 61.301 55.000 0.00 0.00 36.92 3.02
583 609 7.754851 TGATACATAGGCTAATCTCGTGTTA 57.245 36.000 0.00 0.00 0.00 2.41
685 746 1.329171 TGCAAGCCAAAACAGCACCT 61.329 50.000 0.00 0.00 0.00 4.00
978 1068 6.378582 CATTGTCGTACCTTGCTACATTTTT 58.621 36.000 0.00 0.00 0.00 1.94
979 1069 5.106317 CCATTGTCGTACCTTGCTACATTTT 60.106 40.000 0.00 0.00 0.00 1.82
980 1070 4.394920 CCATTGTCGTACCTTGCTACATTT 59.605 41.667 0.00 0.00 0.00 2.32
981 1071 3.938963 CCATTGTCGTACCTTGCTACATT 59.061 43.478 0.00 0.00 0.00 2.71
982 1072 3.531538 CCATTGTCGTACCTTGCTACAT 58.468 45.455 0.00 0.00 0.00 2.29
983 1073 2.933492 GCCATTGTCGTACCTTGCTACA 60.933 50.000 0.00 0.00 0.00 2.74
992 1082 1.135689 CCAGCAAAGCCATTGTCGTAC 60.136 52.381 2.24 0.00 41.32 3.67
1161 1251 1.585521 CTTGACGTAGCGGGCGTAG 60.586 63.158 0.00 0.00 43.04 3.51
1168 1258 2.060326 TTCTTGGACTTGACGTAGCG 57.940 50.000 0.00 0.00 0.00 4.26
1261 1351 3.322254 CCCACTATGACCAGCCTTAGTAG 59.678 52.174 0.00 0.00 0.00 2.57
1263 1353 2.119495 CCCACTATGACCAGCCTTAGT 58.881 52.381 0.00 0.00 0.00 2.24
1266 1356 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
1268 1358 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
1269 1359 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
1270 1360 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
1271 1361 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
1272 1362 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
1273 1363 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
1274 1364 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
1275 1365 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
1276 1366 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
1277 1367 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
1278 1368 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
1279 1369 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
1280 1370 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
1281 1371 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
1282 1372 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
1311 1401 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
1317 1407 9.570468 CCAGTATGAAGGTAGTAACATAGACTA 57.430 37.037 0.00 0.00 39.69 2.59
1318 1408 7.506261 CCCAGTATGAAGGTAGTAACATAGACT 59.494 40.741 0.00 0.00 39.69 3.24
1319 1409 7.659186 CCCAGTATGAAGGTAGTAACATAGAC 58.341 42.308 0.00 0.00 39.69 2.59
1320 1410 6.267014 GCCCAGTATGAAGGTAGTAACATAGA 59.733 42.308 0.00 0.00 39.69 1.98
1321 1411 6.041637 TGCCCAGTATGAAGGTAGTAACATAG 59.958 42.308 0.00 0.00 39.69 2.23
1322 1412 5.900699 TGCCCAGTATGAAGGTAGTAACATA 59.099 40.000 0.00 0.00 39.69 2.29
1323 1413 4.719773 TGCCCAGTATGAAGGTAGTAACAT 59.280 41.667 0.00 0.00 39.69 2.71
1324 1414 4.098155 TGCCCAGTATGAAGGTAGTAACA 58.902 43.478 0.00 0.00 39.69 2.41
1325 1415 4.161754 ACTGCCCAGTATGAAGGTAGTAAC 59.838 45.833 0.00 0.00 40.40 2.50
1326 1416 4.161565 CACTGCCCAGTATGAAGGTAGTAA 59.838 45.833 0.00 0.00 40.27 2.24
1327 1417 3.704566 CACTGCCCAGTATGAAGGTAGTA 59.295 47.826 0.00 0.00 40.27 1.82
1328 1418 2.501723 CACTGCCCAGTATGAAGGTAGT 59.498 50.000 0.00 0.00 42.22 2.73
1329 1419 2.501723 ACACTGCCCAGTATGAAGGTAG 59.498 50.000 0.00 0.00 40.20 3.18
1330 1420 2.500098 GACACTGCCCAGTATGAAGGTA 59.500 50.000 0.00 0.00 40.20 3.08
1331 1421 1.279271 GACACTGCCCAGTATGAAGGT 59.721 52.381 0.00 0.00 40.20 3.50
1332 1422 1.278985 TGACACTGCCCAGTATGAAGG 59.721 52.381 0.00 0.00 40.20 3.46
1333 1423 2.768253 TGACACTGCCCAGTATGAAG 57.232 50.000 0.00 0.00 40.20 3.02
1334 1424 3.134623 CCTATGACACTGCCCAGTATGAA 59.865 47.826 0.00 0.00 40.20 2.57
1335 1425 2.700371 CCTATGACACTGCCCAGTATGA 59.300 50.000 0.00 0.00 40.20 2.15
1336 1426 2.435805 ACCTATGACACTGCCCAGTATG 59.564 50.000 0.00 0.00 40.20 2.39
1337 1427 2.435805 CACCTATGACACTGCCCAGTAT 59.564 50.000 0.00 0.00 40.20 2.12
1338 1428 1.831106 CACCTATGACACTGCCCAGTA 59.169 52.381 0.00 0.00 40.20 2.74
1339 1429 0.615331 CACCTATGACACTGCCCAGT 59.385 55.000 0.00 0.00 43.61 4.00
1340 1430 0.615331 ACACCTATGACACTGCCCAG 59.385 55.000 0.00 0.00 0.00 4.45
1341 1431 0.324614 CACACCTATGACACTGCCCA 59.675 55.000 0.00 0.00 0.00 5.36
1342 1432 0.392998 CCACACCTATGACACTGCCC 60.393 60.000 0.00 0.00 0.00 5.36
1343 1433 0.324943 ACCACACCTATGACACTGCC 59.675 55.000 0.00 0.00 0.00 4.85
1344 1434 3.000727 GTTACCACACCTATGACACTGC 58.999 50.000 0.00 0.00 0.00 4.40
1345 1435 4.265904 TGTTACCACACCTATGACACTG 57.734 45.455 0.00 0.00 0.00 3.66
1346 1436 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
1347 1437 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
1348 1438 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
1349 1439 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
1350 1440 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
1351 1441 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
1352 1442 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
1353 1443 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
1354 1444 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
1369 1459 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
1370 1460 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
1371 1461 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
1372 1462 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
1383 1473 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
1384 1474 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
1385 1475 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
1386 1476 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
1387 1477 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
1388 1478 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
1389 1479 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
1390 1480 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
1391 1481 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
1392 1482 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
1393 1483 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
1394 1484 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
1395 1485 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
1396 1486 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
1397 1487 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
1398 1488 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
1399 1489 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
1400 1490 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
1401 1491 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
1402 1492 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
1403 1493 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
1404 1494 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
1405 1495 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
1406 1496 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
1407 1497 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
1408 1498 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
1409 1499 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
1410 1500 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
1411 1501 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
1412 1502 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
1413 1503 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
1414 1504 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
1433 1523 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
1434 1524 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
1435 1525 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
1436 1526 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
1437 1527 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
1438 1528 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
1439 1529 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
1440 1530 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
1441 1531 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
1442 1532 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
1443 1533 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
1444 1534 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
1445 1535 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
1446 1536 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
1447 1537 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
1448 1538 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
1449 1539 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
1450 1540 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
1451 1541 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
1452 1542 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
1453 1543 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
1454 1544 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
1455 1545 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
1456 1546 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
1457 1547 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
1458 1548 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
1459 1549 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
1460 1550 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
1461 1551 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
1462 1552 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
1463 1553 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
1464 1554 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
1465 1555 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
1466 1556 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
1467 1557 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
1468 1558 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
1469 1559 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
1470 1560 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
1471 1561 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
1472 1562 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
1473 1563 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
1474 1564 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
1475 1565 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
1476 1566 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
1477 1567 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
1478 1568 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
1479 1569 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
1480 1570 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
1481 1571 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
1482 1572 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
1483 1573 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
1484 1574 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
1485 1575 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
1486 1576 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
1487 1577 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
1488 1578 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
1489 1579 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
1490 1580 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
1491 1581 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
1492 1582 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
1493 1583 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
1494 1584 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
1495 1585 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
1496 1586 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
1497 1587 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
1498 1588 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
1499 1589 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
1501 1591 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
1502 1592 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
1503 1593 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
1504 1594 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
1505 1595 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
1506 1596 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
1507 1597 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
1508 1598 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
1509 1599 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
1510 1600 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
1511 1601 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
1512 1602 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
1513 1603 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
1514 1604 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
1515 1605 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
1516 1606 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
1517 1607 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
1518 1608 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
1519 1609 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
1520 1610 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
1521 1611 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
1522 1612 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
1523 1613 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
1524 1614 2.561209 TTAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
1525 1615 3.744660 GAATTAGGCTGGTCATAGTGGG 58.255 50.000 0.00 0.00 0.00 4.61
1526 1616 3.393800 CGAATTAGGCTGGTCATAGTGG 58.606 50.000 0.00 0.00 0.00 4.00
1527 1617 2.802816 GCGAATTAGGCTGGTCATAGTG 59.197 50.000 0.00 0.00 0.00 2.74
1528 1618 2.224305 GGCGAATTAGGCTGGTCATAGT 60.224 50.000 4.82 0.00 0.00 2.12
1529 1619 2.417719 GGCGAATTAGGCTGGTCATAG 58.582 52.381 4.82 0.00 0.00 2.23
1530 1620 1.071699 GGGCGAATTAGGCTGGTCATA 59.928 52.381 11.74 0.00 36.85 2.15
1531 1621 0.179018 GGGCGAATTAGGCTGGTCAT 60.179 55.000 11.74 0.00 36.85 3.06
1532 1622 1.223487 GGGCGAATTAGGCTGGTCA 59.777 57.895 11.74 0.00 36.85 4.02
1533 1623 1.526225 GGGGCGAATTAGGCTGGTC 60.526 63.158 11.74 0.00 36.85 4.02
1534 1624 1.571773 AAGGGGCGAATTAGGCTGGT 61.572 55.000 11.74 0.00 36.85 4.00
1535 1625 1.103398 CAAGGGGCGAATTAGGCTGG 61.103 60.000 11.74 0.00 36.85 4.85
1536 1626 0.394352 ACAAGGGGCGAATTAGGCTG 60.394 55.000 11.74 5.37 36.85 4.85
1537 1627 0.331616 AACAAGGGGCGAATTAGGCT 59.668 50.000 11.74 0.00 36.85 4.58
1538 1628 1.182667 AAACAAGGGGCGAATTAGGC 58.817 50.000 3.37 3.37 0.00 3.93
1539 1629 2.560981 ACAAAACAAGGGGCGAATTAGG 59.439 45.455 0.00 0.00 0.00 2.69
1550 1640 2.991190 GCATCTGCATGACAAAACAAGG 59.009 45.455 0.00 0.00 41.59 3.61
1600 1690 3.190849 CATCGACAGCGCCCACTG 61.191 66.667 2.29 0.00 43.59 3.66
1807 1897 2.202797 CGTGTAGAGCGCCTGCAT 60.203 61.111 16.73 0.00 46.23 3.96
1837 1927 0.253327 GGCTTCTTGGGTCCGAAGAT 59.747 55.000 16.22 0.00 39.10 2.40
1845 1935 0.114364 ATTTTCCGGGCTTCTTGGGT 59.886 50.000 0.00 0.00 0.00 4.51
1860 1950 4.529377 ACTTGATGGACCAATCAGCATTTT 59.471 37.500 0.00 0.00 37.83 1.82
1863 1953 3.377253 ACTTGATGGACCAATCAGCAT 57.623 42.857 0.00 0.00 37.83 3.79
1876 1966 5.505173 ACCTGTGAAACTCAAACTTGATG 57.495 39.130 0.00 0.00 38.04 3.07
1887 1977 0.108019 GTCCCGGAACCTGTGAAACT 59.892 55.000 0.73 0.00 38.04 2.66
1889 1979 0.179040 GTGTCCCGGAACCTGTGAAA 60.179 55.000 0.73 0.00 0.00 2.69
1919 2009 2.106566 AGTAGTACTCCGACTCTCCGA 58.893 52.381 0.00 0.00 0.00 4.55
1920 2010 2.159128 TCAGTAGTACTCCGACTCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
1921 2011 3.540314 TCAGTAGTACTCCGACTCTCC 57.460 52.381 0.00 0.00 0.00 3.71
1922 2012 4.444536 ACATCAGTAGTACTCCGACTCTC 58.555 47.826 0.00 0.00 0.00 3.20
1923 2013 4.490899 ACATCAGTAGTACTCCGACTCT 57.509 45.455 0.00 0.00 0.00 3.24
1924 2014 5.564048 AAACATCAGTAGTACTCCGACTC 57.436 43.478 0.00 0.00 0.00 3.36
1925 2015 5.979288 AAAACATCAGTAGTACTCCGACT 57.021 39.130 0.00 0.00 0.00 4.18
1926 2016 8.400947 TGTATAAAACATCAGTAGTACTCCGAC 58.599 37.037 0.00 0.00 31.43 4.79
2052 2171 8.523523 TGCACTAATTTTCTGAAATCAACATG 57.476 30.769 3.31 0.00 34.44 3.21
2070 2189 9.660180 TTGTGTAGTTTATATGACATGCACTAA 57.340 29.630 0.00 0.00 0.00 2.24
2096 2215 5.565592 TCGCATATCATTCAAACTGCTTT 57.434 34.783 0.00 0.00 0.00 3.51
2170 2289 7.701539 ACCACAATGCTAAGTCATTCATTTA 57.298 32.000 0.00 0.00 34.68 1.40
2222 2343 5.551233 AGCAACTTTGTAGTAGCAAGATGA 58.449 37.500 3.78 0.00 33.17 2.92
2236 2357 9.437045 GACAAATATTTTCCAAAAGCAACTTTG 57.563 29.630 0.00 0.00 33.64 2.77
2263 2384 3.771216 AGATCTCACATGGGCTTGTTTT 58.229 40.909 0.00 0.00 0.00 2.43
2269 2390 8.773033 ATTTAAAATTAGATCTCACATGGGCT 57.227 30.769 0.00 0.00 0.00 5.19
2418 2539 6.758416 GCCATGAAACCCTATTCTGAAATTTC 59.242 38.462 11.41 11.41 0.00 2.17
2453 2574 8.854614 AACAGATTATATAGAGCCAAATGGAC 57.145 34.615 2.98 0.00 37.39 4.02
2624 2745 4.202641 GGGGTCCTCCTCCTTTTCTAAAAA 60.203 45.833 0.00 0.00 35.33 1.94
2625 2746 3.332783 GGGGTCCTCCTCCTTTTCTAAAA 59.667 47.826 0.00 0.00 35.33 1.52
2626 2747 2.917600 GGGGTCCTCCTCCTTTTCTAAA 59.082 50.000 0.00 0.00 35.33 1.85
2627 2748 2.558974 GGGGTCCTCCTCCTTTTCTAA 58.441 52.381 0.00 0.00 35.33 2.10
2628 2749 2.265526 GGGGTCCTCCTCCTTTTCTA 57.734 55.000 0.00 0.00 35.33 2.10
2629 2750 3.106441 GGGGTCCTCCTCCTTTTCT 57.894 57.895 0.00 0.00 35.33 2.52
2645 2766 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2646 2767 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
2647 2768 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
2648 2769 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
2649 2770 0.106819 ATTGTCCAGATGCAGAGGCC 60.107 55.000 0.00 0.00 40.13 5.19
2650 2771 1.022735 CATTGTCCAGATGCAGAGGC 58.977 55.000 0.00 0.00 41.68 4.70
2651 2772 1.022735 GCATTGTCCAGATGCAGAGG 58.977 55.000 4.35 0.00 46.96 3.69
2657 2778 2.545526 GACCGTATGCATTGTCCAGATG 59.454 50.000 3.54 0.00 0.00 2.90
2658 2779 2.170397 TGACCGTATGCATTGTCCAGAT 59.830 45.455 3.54 0.00 0.00 2.90
2659 2780 1.552792 TGACCGTATGCATTGTCCAGA 59.447 47.619 3.54 0.00 0.00 3.86
2660 2781 2.022764 TGACCGTATGCATTGTCCAG 57.977 50.000 3.54 0.00 0.00 3.86
2661 2782 2.708216 ATGACCGTATGCATTGTCCA 57.292 45.000 3.54 0.00 0.00 4.02
2662 2783 4.370364 AAAATGACCGTATGCATTGTCC 57.630 40.909 3.54 0.00 35.11 4.02
2663 2784 9.677567 ATTAATAAAATGACCGTATGCATTGTC 57.322 29.630 3.54 10.42 35.11 3.18
2687 2808 9.131791 ACTTTGTAAGGTCTTGTGTCAATAATT 57.868 29.630 0.00 0.00 0.00 1.40
2688 2809 8.691661 ACTTTGTAAGGTCTTGTGTCAATAAT 57.308 30.769 0.00 0.00 0.00 1.28
2689 2810 7.771361 TGACTTTGTAAGGTCTTGTGTCAATAA 59.229 33.333 8.11 0.00 34.01 1.40
2690 2811 7.276658 TGACTTTGTAAGGTCTTGTGTCAATA 58.723 34.615 8.11 0.00 34.01 1.90
2691 2812 6.119536 TGACTTTGTAAGGTCTTGTGTCAAT 58.880 36.000 8.11 0.00 34.01 2.57
2692 2813 5.492895 TGACTTTGTAAGGTCTTGTGTCAA 58.507 37.500 8.11 0.00 34.01 3.18
2693 2814 5.092554 TGACTTTGTAAGGTCTTGTGTCA 57.907 39.130 8.11 0.00 34.01 3.58
2694 2815 6.704493 TGTATGACTTTGTAAGGTCTTGTGTC 59.296 38.462 8.11 0.00 34.01 3.67
2695 2816 6.588204 TGTATGACTTTGTAAGGTCTTGTGT 58.412 36.000 8.11 0.00 34.01 3.72
2696 2817 7.011950 TGTTGTATGACTTTGTAAGGTCTTGTG 59.988 37.037 8.11 0.00 34.01 3.33
2697 2818 7.051623 TGTTGTATGACTTTGTAAGGTCTTGT 58.948 34.615 8.11 0.00 34.01 3.16
2698 2819 7.490962 TGTTGTATGACTTTGTAAGGTCTTG 57.509 36.000 8.11 0.00 34.01 3.02
2699 2820 8.691661 ATTGTTGTATGACTTTGTAAGGTCTT 57.308 30.769 8.11 4.91 34.01 3.01
2700 2821 9.787435 TTATTGTTGTATGACTTTGTAAGGTCT 57.213 29.630 8.11 0.00 34.01 3.85
2702 2823 9.569122 ACTTATTGTTGTATGACTTTGTAAGGT 57.431 29.630 0.00 0.00 0.00 3.50
2706 2827 9.990360 TCAGACTTATTGTTGTATGACTTTGTA 57.010 29.630 0.00 0.00 30.76 2.41
2707 2828 8.902540 TCAGACTTATTGTTGTATGACTTTGT 57.097 30.769 0.00 0.00 30.76 2.83
2708 2829 9.817365 CTTCAGACTTATTGTTGTATGACTTTG 57.183 33.333 0.00 0.00 34.71 2.77
2709 2830 8.507249 GCTTCAGACTTATTGTTGTATGACTTT 58.493 33.333 0.00 0.00 34.71 2.66
2710 2831 7.119846 GGCTTCAGACTTATTGTTGTATGACTT 59.880 37.037 0.00 0.00 34.71 3.01
2711 2832 6.595716 GGCTTCAGACTTATTGTTGTATGACT 59.404 38.462 0.00 0.00 34.71 3.41
2712 2833 6.371548 TGGCTTCAGACTTATTGTTGTATGAC 59.628 38.462 0.00 0.00 34.71 3.06
2713 2834 6.371548 GTGGCTTCAGACTTATTGTTGTATGA 59.628 38.462 0.00 0.00 33.39 2.15
2714 2835 6.403636 GGTGGCTTCAGACTTATTGTTGTATG 60.404 42.308 0.00 0.00 0.00 2.39
2715 2836 5.648092 GGTGGCTTCAGACTTATTGTTGTAT 59.352 40.000 0.00 0.00 0.00 2.29
2716 2837 5.001232 GGTGGCTTCAGACTTATTGTTGTA 58.999 41.667 0.00 0.00 0.00 2.41
2717 2838 3.821033 GGTGGCTTCAGACTTATTGTTGT 59.179 43.478 0.00 0.00 0.00 3.32
2718 2839 3.820467 TGGTGGCTTCAGACTTATTGTTG 59.180 43.478 0.00 0.00 0.00 3.33
2719 2840 4.098914 TGGTGGCTTCAGACTTATTGTT 57.901 40.909 0.00 0.00 0.00 2.83
2720 2841 3.788227 TGGTGGCTTCAGACTTATTGT 57.212 42.857 0.00 0.00 0.00 2.71
2721 2842 4.278170 TGTTTGGTGGCTTCAGACTTATTG 59.722 41.667 0.00 0.00 0.00 1.90
2722 2843 4.469657 TGTTTGGTGGCTTCAGACTTATT 58.530 39.130 0.00 0.00 0.00 1.40
2723 2844 4.098914 TGTTTGGTGGCTTCAGACTTAT 57.901 40.909 0.00 0.00 0.00 1.73
2724 2845 3.569194 TGTTTGGTGGCTTCAGACTTA 57.431 42.857 0.00 0.00 0.00 2.24
2725 2846 2.435372 TGTTTGGTGGCTTCAGACTT 57.565 45.000 0.00 0.00 0.00 3.01
2726 2847 2.435372 TTGTTTGGTGGCTTCAGACT 57.565 45.000 0.00 0.00 0.00 3.24
2727 2848 2.799562 GCTTTGTTTGGTGGCTTCAGAC 60.800 50.000 0.00 0.00 0.00 3.51
2728 2849 1.408702 GCTTTGTTTGGTGGCTTCAGA 59.591 47.619 0.00 0.00 0.00 3.27
2729 2850 1.136695 TGCTTTGTTTGGTGGCTTCAG 59.863 47.619 0.00 0.00 0.00 3.02
2730 2851 1.189752 TGCTTTGTTTGGTGGCTTCA 58.810 45.000 0.00 0.00 0.00 3.02
2731 2852 1.933181 GTTGCTTTGTTTGGTGGCTTC 59.067 47.619 0.00 0.00 0.00 3.86
2732 2853 1.277557 TGTTGCTTTGTTTGGTGGCTT 59.722 42.857 0.00 0.00 0.00 4.35
2733 2854 0.901124 TGTTGCTTTGTTTGGTGGCT 59.099 45.000 0.00 0.00 0.00 4.75
2734 2855 1.866601 GATGTTGCTTTGTTTGGTGGC 59.133 47.619 0.00 0.00 0.00 5.01
2735 2856 3.125316 CAGATGTTGCTTTGTTTGGTGG 58.875 45.455 0.00 0.00 0.00 4.61
2736 2857 3.784338 ACAGATGTTGCTTTGTTTGGTG 58.216 40.909 0.00 0.00 0.00 4.17
2737 2858 3.489059 CGACAGATGTTGCTTTGTTTGGT 60.489 43.478 0.00 0.00 0.00 3.67
2738 2859 3.044986 CGACAGATGTTGCTTTGTTTGG 58.955 45.455 0.00 0.00 0.00 3.28
2748 2869 2.386661 AGGGTTAGCGACAGATGTTG 57.613 50.000 0.00 0.00 0.00 3.33
2749 2870 3.069729 GGATAGGGTTAGCGACAGATGTT 59.930 47.826 0.00 0.00 0.00 2.71
2750 2871 2.628657 GGATAGGGTTAGCGACAGATGT 59.371 50.000 0.00 0.00 0.00 3.06
2751 2872 2.628178 TGGATAGGGTTAGCGACAGATG 59.372 50.000 0.00 0.00 0.00 2.90
2752 2873 2.894126 CTGGATAGGGTTAGCGACAGAT 59.106 50.000 0.00 0.00 0.00 2.90
2753 2874 2.307768 CTGGATAGGGTTAGCGACAGA 58.692 52.381 0.00 0.00 0.00 3.41
2754 2875 2.032620 ACTGGATAGGGTTAGCGACAG 58.967 52.381 0.00 0.00 0.00 3.51
2755 2876 2.154567 ACTGGATAGGGTTAGCGACA 57.845 50.000 0.00 0.00 0.00 4.35
2756 2877 2.429610 TCAACTGGATAGGGTTAGCGAC 59.570 50.000 0.00 0.00 0.00 5.19
2757 2878 2.742348 TCAACTGGATAGGGTTAGCGA 58.258 47.619 0.00 0.00 0.00 4.93
2758 2879 3.181465 ACATCAACTGGATAGGGTTAGCG 60.181 47.826 0.00 0.00 33.95 4.26
2759 2880 4.423625 ACATCAACTGGATAGGGTTAGC 57.576 45.455 0.00 0.00 33.95 3.09
2760 2881 5.012148 CCCTACATCAACTGGATAGGGTTAG 59.988 48.000 6.50 0.00 43.10 2.34
2761 2882 4.905456 CCCTACATCAACTGGATAGGGTTA 59.095 45.833 6.50 0.00 43.10 2.85
2762 2883 3.716872 CCCTACATCAACTGGATAGGGTT 59.283 47.826 6.50 0.00 43.10 4.11
2763 2884 3.318313 CCCTACATCAACTGGATAGGGT 58.682 50.000 6.50 0.00 43.10 4.34
2764 2885 2.639839 CCCCTACATCAACTGGATAGGG 59.360 54.545 7.56 7.56 45.83 3.53
2765 2886 2.039084 GCCCCTACATCAACTGGATAGG 59.961 54.545 0.00 0.00 33.95 2.57
2766 2887 2.289072 CGCCCCTACATCAACTGGATAG 60.289 54.545 0.00 0.00 33.95 2.08
2767 2888 1.691976 CGCCCCTACATCAACTGGATA 59.308 52.381 0.00 0.00 33.95 2.59
2768 2889 0.469917 CGCCCCTACATCAACTGGAT 59.530 55.000 0.00 0.00 36.39 3.41
2769 2890 1.904771 CGCCCCTACATCAACTGGA 59.095 57.895 0.00 0.00 0.00 3.86
2770 2891 1.819632 GCGCCCCTACATCAACTGG 60.820 63.158 0.00 0.00 0.00 4.00
2771 2892 1.091771 CAGCGCCCCTACATCAACTG 61.092 60.000 2.29 0.00 0.00 3.16
2772 2893 1.221840 CAGCGCCCCTACATCAACT 59.778 57.895 2.29 0.00 0.00 3.16
2773 2894 0.392461 TTCAGCGCCCCTACATCAAC 60.392 55.000 2.29 0.00 0.00 3.18
2774 2895 0.326595 TTTCAGCGCCCCTACATCAA 59.673 50.000 2.29 0.00 0.00 2.57
2775 2896 0.107703 CTTTCAGCGCCCCTACATCA 60.108 55.000 2.29 0.00 0.00 3.07
2776 2897 0.107654 ACTTTCAGCGCCCCTACATC 60.108 55.000 2.29 0.00 0.00 3.06
2777 2898 0.107654 GACTTTCAGCGCCCCTACAT 60.108 55.000 2.29 0.00 0.00 2.29
2778 2899 1.192146 AGACTTTCAGCGCCCCTACA 61.192 55.000 2.29 0.00 0.00 2.74
2779 2900 0.741221 CAGACTTTCAGCGCCCCTAC 60.741 60.000 2.29 0.00 0.00 3.18
2780 2901 1.596934 CAGACTTTCAGCGCCCCTA 59.403 57.895 2.29 0.00 0.00 3.53
2781 2902 2.348998 CAGACTTTCAGCGCCCCT 59.651 61.111 2.29 0.00 0.00 4.79
2782 2903 2.747855 CCAGACTTTCAGCGCCCC 60.748 66.667 2.29 0.00 0.00 5.80
2783 2904 2.747855 CCCAGACTTTCAGCGCCC 60.748 66.667 2.29 0.00 0.00 6.13
2784 2905 3.435186 GCCCAGACTTTCAGCGCC 61.435 66.667 2.29 0.00 0.00 6.53
2785 2906 2.521958 TAGGCCCAGACTTTCAGCGC 62.522 60.000 0.00 0.00 0.00 5.92
2786 2907 0.036388 TTAGGCCCAGACTTTCAGCG 60.036 55.000 0.00 0.00 0.00 5.18
2787 2908 2.426842 ATTAGGCCCAGACTTTCAGC 57.573 50.000 0.00 0.00 0.00 4.26
2788 2909 3.199946 TGGTATTAGGCCCAGACTTTCAG 59.800 47.826 0.00 0.00 0.00 3.02
2789 2910 3.186283 TGGTATTAGGCCCAGACTTTCA 58.814 45.455 0.00 0.00 0.00 2.69
2790 2911 3.926058 TGGTATTAGGCCCAGACTTTC 57.074 47.619 0.00 0.00 0.00 2.62
2791 2912 4.202631 TGTTTGGTATTAGGCCCAGACTTT 60.203 41.667 0.00 0.00 36.91 2.66
2792 2913 3.332485 TGTTTGGTATTAGGCCCAGACTT 59.668 43.478 0.00 0.00 36.91 3.01
2793 2914 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
2794 2915 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
2795 2916 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
2796 2917 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
2797 2918 2.025699 GGTCTGTTTGGTATTAGGCCCA 60.026 50.000 0.00 0.00 0.00 5.36
2798 2919 2.025699 TGGTCTGTTTGGTATTAGGCCC 60.026 50.000 0.00 0.00 34.04 5.80
2799 2920 3.014623 GTGGTCTGTTTGGTATTAGGCC 58.985 50.000 0.00 0.00 35.52 5.19
2800 2921 2.676342 CGTGGTCTGTTTGGTATTAGGC 59.324 50.000 0.00 0.00 0.00 3.93
2801 2922 2.676342 GCGTGGTCTGTTTGGTATTAGG 59.324 50.000 0.00 0.00 0.00 2.69
2802 2923 3.331150 TGCGTGGTCTGTTTGGTATTAG 58.669 45.455 0.00 0.00 0.00 1.73
2803 2924 3.331150 CTGCGTGGTCTGTTTGGTATTA 58.669 45.455 0.00 0.00 0.00 0.98
2804 2925 2.151202 CTGCGTGGTCTGTTTGGTATT 58.849 47.619 0.00 0.00 0.00 1.89
2805 2926 1.808411 CTGCGTGGTCTGTTTGGTAT 58.192 50.000 0.00 0.00 0.00 2.73
2806 2927 0.882927 GCTGCGTGGTCTGTTTGGTA 60.883 55.000 0.00 0.00 0.00 3.25
2807 2928 2.186826 GCTGCGTGGTCTGTTTGGT 61.187 57.895 0.00 0.00 0.00 3.67
2808 2929 2.639286 GCTGCGTGGTCTGTTTGG 59.361 61.111 0.00 0.00 0.00 3.28
2809 2930 1.723608 TTGGCTGCGTGGTCTGTTTG 61.724 55.000 0.00 0.00 0.00 2.93
2810 2931 1.034838 TTTGGCTGCGTGGTCTGTTT 61.035 50.000 0.00 0.00 0.00 2.83
2811 2932 1.453015 TTTGGCTGCGTGGTCTGTT 60.453 52.632 0.00 0.00 0.00 3.16
2812 2933 2.186826 GTTTGGCTGCGTGGTCTGT 61.187 57.895 0.00 0.00 0.00 3.41
2813 2934 2.639286 GTTTGGCTGCGTGGTCTG 59.361 61.111 0.00 0.00 0.00 3.51
2814 2935 1.764571 TAGGTTTGGCTGCGTGGTCT 61.765 55.000 0.00 0.00 0.00 3.85
2815 2936 0.887387 TTAGGTTTGGCTGCGTGGTC 60.887 55.000 0.00 0.00 0.00 4.02
2816 2937 1.149627 TTAGGTTTGGCTGCGTGGT 59.850 52.632 0.00 0.00 0.00 4.16
2817 2938 1.169661 TGTTAGGTTTGGCTGCGTGG 61.170 55.000 0.00 0.00 0.00 4.94
2818 2939 0.881118 ATGTTAGGTTTGGCTGCGTG 59.119 50.000 0.00 0.00 0.00 5.34
2819 2940 1.165270 GATGTTAGGTTTGGCTGCGT 58.835 50.000 0.00 0.00 0.00 5.24
2820 2941 1.453155 AGATGTTAGGTTTGGCTGCG 58.547 50.000 0.00 0.00 0.00 5.18
2821 2942 4.095036 GTCTTAGATGTTAGGTTTGGCTGC 59.905 45.833 0.00 0.00 0.00 5.25
2822 2943 5.491982 AGTCTTAGATGTTAGGTTTGGCTG 58.508 41.667 0.00 0.00 0.00 4.85
2823 2944 5.763876 AGTCTTAGATGTTAGGTTTGGCT 57.236 39.130 0.00 0.00 0.00 4.75
2824 2945 5.938125 TCAAGTCTTAGATGTTAGGTTTGGC 59.062 40.000 0.00 0.00 0.00 4.52
2825 2946 6.595716 CCTCAAGTCTTAGATGTTAGGTTTGG 59.404 42.308 0.00 0.00 0.00 3.28
2826 2947 7.162082 ACCTCAAGTCTTAGATGTTAGGTTTG 58.838 38.462 4.26 0.00 30.79 2.93
2827 2948 7.317722 ACCTCAAGTCTTAGATGTTAGGTTT 57.682 36.000 4.26 0.00 30.79 3.27
2828 2949 6.070710 GGACCTCAAGTCTTAGATGTTAGGTT 60.071 42.308 9.53 0.00 45.54 3.50
2829 2950 5.422650 GGACCTCAAGTCTTAGATGTTAGGT 59.577 44.000 8.38 8.38 45.54 3.08
2830 2951 5.163395 GGGACCTCAAGTCTTAGATGTTAGG 60.163 48.000 0.00 0.00 45.54 2.69
2831 2952 5.422331 TGGGACCTCAAGTCTTAGATGTTAG 59.578 44.000 0.00 0.00 45.54 2.34
2832 2953 5.338632 TGGGACCTCAAGTCTTAGATGTTA 58.661 41.667 0.00 0.00 45.54 2.41
2833 2954 4.168101 TGGGACCTCAAGTCTTAGATGTT 58.832 43.478 0.00 0.00 45.54 2.71
2834 2955 3.791320 TGGGACCTCAAGTCTTAGATGT 58.209 45.455 0.00 0.00 45.54 3.06
2835 2956 4.508662 GTTGGGACCTCAAGTCTTAGATG 58.491 47.826 0.00 0.00 45.54 2.90
2836 2957 3.519913 GGTTGGGACCTCAAGTCTTAGAT 59.480 47.826 0.00 0.00 45.54 1.98
2837 2958 2.904434 GGTTGGGACCTCAAGTCTTAGA 59.096 50.000 0.00 0.00 45.54 2.10
2838 2959 2.637872 TGGTTGGGACCTCAAGTCTTAG 59.362 50.000 0.00 0.00 46.66 2.18
2839 2960 2.637872 CTGGTTGGGACCTCAAGTCTTA 59.362 50.000 0.00 0.00 46.66 2.10
2840 2961 1.421646 CTGGTTGGGACCTCAAGTCTT 59.578 52.381 0.00 0.00 46.66 3.01
2841 2962 1.059913 CTGGTTGGGACCTCAAGTCT 58.940 55.000 0.00 0.00 46.66 3.24
2842 2963 0.036875 CCTGGTTGGGACCTCAAGTC 59.963 60.000 0.00 0.00 46.66 3.01
2843 2964 0.401395 TCCTGGTTGGGACCTCAAGT 60.401 55.000 0.00 0.00 46.66 3.16
2844 2965 2.463441 TCCTGGTTGGGACCTCAAG 58.537 57.895 0.00 0.00 46.66 3.02
2845 2966 4.761163 TCCTGGTTGGGACCTCAA 57.239 55.556 0.00 0.00 46.66 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.