Multiple sequence alignment - TraesCS3B01G317900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G317900 chr3B 100.000 2552 0 0 1 2552 512389512 512392063 0.000000e+00 4713.0
1 TraesCS3B01G317900 chr3B 88.421 570 66 0 719 1288 766343357 766343926 0.000000e+00 688.0
2 TraesCS3B01G317900 chr3B 91.798 317 24 2 123 439 766340705 766341019 8.380000e-120 440.0
3 TraesCS3B01G317900 chr3B 77.150 407 54 23 1976 2363 766344746 766345132 1.550000e-47 200.0
4 TraesCS3B01G317900 chr3B 92.045 88 6 1 508 595 766341034 766341120 3.450000e-24 122.0
5 TraesCS3B01G317900 chr3B 74.828 290 43 19 1981 2257 473238298 473238570 1.250000e-18 104.0
6 TraesCS3B01G317900 chr3B 97.674 43 1 0 680 722 766341117 766341159 9.790000e-10 75.0
7 TraesCS3B01G317900 chr7B 93.410 1836 119 2 719 2552 517903931 517905766 0.000000e+00 2719.0
8 TraesCS3B01G317900 chr7B 88.772 570 64 0 719 1288 73169391 73169960 0.000000e+00 699.0
9 TraesCS3B01G317900 chr7B 94.785 326 15 2 115 439 517901327 517901651 8.150000e-140 507.0
10 TraesCS3B01G317900 chr7B 82.688 491 48 16 1966 2441 504404073 504404541 3.950000e-108 401.0
11 TraesCS3B01G317900 chr7B 76.773 409 52 25 1976 2363 73170818 73171204 3.350000e-44 189.0
12 TraesCS3B01G317900 chr7B 91.525 59 4 1 537 595 73167096 73167153 2.100000e-11 80.5
13 TraesCS3B01G317900 chr7B 97.674 43 1 0 680 722 73167150 73167192 9.790000e-10 75.0
14 TraesCS3B01G317900 chr7B 97.297 37 0 1 1803 1839 504234250 504234285 7.620000e-06 62.1
15 TraesCS3B01G317900 chr6B 93.676 506 31 1 115 620 138632343 138632847 0.000000e+00 756.0
16 TraesCS3B01G317900 chr6B 93.281 506 33 1 115 620 138657076 138657580 0.000000e+00 745.0
17 TraesCS3B01G317900 chr6B 86.667 570 76 0 719 1288 676703658 676704227 1.290000e-177 632.0
18 TraesCS3B01G317900 chr6B 91.765 85 6 1 508 592 676682805 676682888 1.600000e-22 117.0
19 TraesCS3B01G317900 chr6B 90.588 85 7 1 508 592 617030895 617030978 7.460000e-21 111.0
20 TraesCS3B01G317900 chr6B 81.560 141 19 6 1349 1487 299595211 299595346 2.680000e-20 110.0
21 TraesCS3B01G317900 chrUn 93.083 506 34 1 115 620 194986214 194985710 0.000000e+00 739.0
22 TraesCS3B01G317900 chrUn 93.857 407 25 0 202 608 477977902 477978308 4.670000e-172 614.0
23 TraesCS3B01G317900 chr2D 89.298 570 61 0 719 1288 238091081 238090512 0.000000e+00 715.0
24 TraesCS3B01G317900 chr2D 79.028 391 51 19 1976 2354 238089632 238089261 3.280000e-59 239.0
25 TraesCS3B01G317900 chr2D 86.667 165 16 3 1794 1952 25204620 25204456 7.260000e-41 178.0
26 TraesCS3B01G317900 chr7D 89.123 570 62 0 719 1288 83760284 83760853 0.000000e+00 710.0
27 TraesCS3B01G317900 chr7D 79.028 391 52 18 1976 2354 83761732 83762104 9.120000e-60 241.0
28 TraesCS3B01G317900 chr2B 87.368 570 72 0 719 1288 419939979 419940548 0.000000e+00 654.0
29 TraesCS3B01G317900 chr2B 86.842 570 73 1 719 1288 528808078 528807511 9.960000e-179 636.0
30 TraesCS3B01G317900 chr2B 92.429 317 22 2 123 439 528810736 528810422 3.870000e-123 451.0
31 TraesCS3B01G317900 chr2B 78.517 391 55 17 1976 2354 419941400 419941773 1.970000e-56 230.0
32 TraesCS3B01G317900 chr1B 88.364 550 44 11 1797 2329 579973084 579973630 0.000000e+00 643.0
33 TraesCS3B01G317900 chr1B 92.114 317 22 3 123 439 344012338 344012651 6.480000e-121 444.0
34 TraesCS3B01G317900 chr1B 89.686 223 20 3 2331 2551 579973713 579973934 5.380000e-72 281.0
35 TraesCS3B01G317900 chr1B 79.003 381 48 21 1987 2354 344043113 344043474 5.490000e-57 231.0
36 TraesCS3B01G317900 chr1B 95.349 43 2 0 680 722 344012749 344012791 4.560000e-08 69.4
37 TraesCS3B01G317900 chr4B 87.018 570 73 1 719 1288 43563952 43563384 2.140000e-180 641.0
38 TraesCS3B01G317900 chr4B 91.167 317 26 2 123 439 43592838 43592524 1.810000e-116 429.0
39 TraesCS3B01G317900 chr4B 78.215 381 50 22 1987 2354 43562584 43562224 1.990000e-51 213.0
40 TraesCS3B01G317900 chr4B 75.986 279 39 15 1981 2248 587100977 587101238 4.460000e-23 119.0
41 TraesCS3B01G317900 chr5B 80.172 348 54 8 277 615 13355606 13355947 1.960000e-61 246.0
42 TraesCS3B01G317900 chr4A 92.035 113 8 1 1 112 323595739 323595851 9.450000e-35 158.0
43 TraesCS3B01G317900 chr7A 89.381 113 11 1 1 112 217299874 217299762 9.520000e-30 141.0
44 TraesCS3B01G317900 chr6A 83.562 146 19 4 1349 1494 222695823 222695683 5.730000e-27 132.0
45 TraesCS3B01G317900 chr6D 77.500 160 20 8 1981 2130 16252169 16252322 5.850000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G317900 chr3B 512389512 512392063 2551 False 4713.000 4713 100.0000 1 2552 1 chr3B.!!$F2 2551
1 TraesCS3B01G317900 chr3B 766340705 766345132 4427 False 305.000 688 89.4176 123 2363 5 chr3B.!!$F3 2240
2 TraesCS3B01G317900 chr7B 517901327 517905766 4439 False 1613.000 2719 94.0975 115 2552 2 chr7B.!!$F4 2437
3 TraesCS3B01G317900 chr7B 73167096 73171204 4108 False 260.875 699 88.6860 537 2363 4 chr7B.!!$F3 1826
4 TraesCS3B01G317900 chr6B 138632343 138632847 504 False 756.000 756 93.6760 115 620 1 chr6B.!!$F1 505
5 TraesCS3B01G317900 chr6B 138657076 138657580 504 False 745.000 745 93.2810 115 620 1 chr6B.!!$F2 505
6 TraesCS3B01G317900 chr6B 676703658 676704227 569 False 632.000 632 86.6670 719 1288 1 chr6B.!!$F6 569
7 TraesCS3B01G317900 chrUn 194985710 194986214 504 True 739.000 739 93.0830 115 620 1 chrUn.!!$R1 505
8 TraesCS3B01G317900 chr2D 238089261 238091081 1820 True 477.000 715 84.1630 719 2354 2 chr2D.!!$R2 1635
9 TraesCS3B01G317900 chr7D 83760284 83762104 1820 False 475.500 710 84.0755 719 2354 2 chr7D.!!$F1 1635
10 TraesCS3B01G317900 chr2B 528807511 528810736 3225 True 543.500 636 89.6355 123 1288 2 chr2B.!!$R1 1165
11 TraesCS3B01G317900 chr2B 419939979 419941773 1794 False 442.000 654 82.9425 719 2354 2 chr2B.!!$F1 1635
12 TraesCS3B01G317900 chr1B 579973084 579973934 850 False 462.000 643 89.0250 1797 2551 2 chr1B.!!$F3 754
13 TraesCS3B01G317900 chr4B 43562224 43563952 1728 True 427.000 641 82.6165 719 2354 2 chr4B.!!$R2 1635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 3042 0.106419 AAGCGGTGGGAAACTTGGAA 60.106 50.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 4895 3.805971 TGCTTATGTTCTCATCATCTGCG 59.194 43.478 0.0 0.0 35.7 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.481854 CTTGATCCAGAGAAGATGCCG 58.518 52.381 0.00 0.00 0.00 5.69
21 22 0.755079 TGATCCAGAGAAGATGCCGG 59.245 55.000 0.00 0.00 0.00 6.13
22 23 1.043816 GATCCAGAGAAGATGCCGGA 58.956 55.000 5.05 0.00 0.00 5.14
23 24 1.000731 GATCCAGAGAAGATGCCGGAG 59.999 57.143 5.05 0.00 0.00 4.63
24 25 0.324738 TCCAGAGAAGATGCCGGAGT 60.325 55.000 5.05 0.00 0.00 3.85
25 26 0.539051 CCAGAGAAGATGCCGGAGTT 59.461 55.000 5.05 0.00 0.00 3.01
26 27 1.649664 CAGAGAAGATGCCGGAGTTG 58.350 55.000 5.05 0.00 0.00 3.16
27 28 1.066573 CAGAGAAGATGCCGGAGTTGT 60.067 52.381 5.05 0.00 0.00 3.32
28 29 1.625818 AGAGAAGATGCCGGAGTTGTT 59.374 47.619 5.05 0.00 0.00 2.83
29 30 1.734465 GAGAAGATGCCGGAGTTGTTG 59.266 52.381 5.05 0.00 0.00 3.33
30 31 1.347707 AGAAGATGCCGGAGTTGTTGA 59.652 47.619 5.05 0.00 0.00 3.18
31 32 2.026822 AGAAGATGCCGGAGTTGTTGAT 60.027 45.455 5.05 0.00 0.00 2.57
32 33 2.029838 AGATGCCGGAGTTGTTGATC 57.970 50.000 5.05 0.00 0.00 2.92
33 34 0.652592 GATGCCGGAGTTGTTGATCG 59.347 55.000 5.05 0.00 0.00 3.69
34 35 0.744414 ATGCCGGAGTTGTTGATCGG 60.744 55.000 5.05 0.00 43.13 4.18
35 36 1.079405 GCCGGAGTTGTTGATCGGA 60.079 57.895 5.05 0.00 42.94 4.55
36 37 1.084370 GCCGGAGTTGTTGATCGGAG 61.084 60.000 5.05 0.00 42.94 4.63
37 38 0.530744 CCGGAGTTGTTGATCGGAGA 59.469 55.000 0.00 0.00 42.94 3.71
38 39 1.469940 CCGGAGTTGTTGATCGGAGAG 60.470 57.143 0.00 0.00 43.63 3.20
39 40 1.469940 CGGAGTTGTTGATCGGAGAGG 60.470 57.143 0.00 0.00 43.63 3.69
40 41 1.825474 GGAGTTGTTGATCGGAGAGGA 59.175 52.381 0.00 0.00 43.63 3.71
41 42 2.432510 GGAGTTGTTGATCGGAGAGGAT 59.567 50.000 0.00 0.00 43.63 3.24
42 43 3.491792 GGAGTTGTTGATCGGAGAGGATC 60.492 52.174 0.00 0.00 43.63 3.36
43 44 2.432510 AGTTGTTGATCGGAGAGGATCC 59.567 50.000 2.48 2.48 43.63 3.36
57 58 6.773976 GAGAGGATCCATAGATTAGTGGAG 57.226 45.833 15.82 0.00 46.87 3.86
58 59 5.588845 AGAGGATCCATAGATTAGTGGAGG 58.411 45.833 15.82 0.00 46.87 4.30
59 60 5.317262 AGAGGATCCATAGATTAGTGGAGGA 59.683 44.000 15.82 0.00 46.87 3.71
60 61 5.588845 AGGATCCATAGATTAGTGGAGGAG 58.411 45.833 15.82 0.00 46.87 3.69
61 62 4.714308 GGATCCATAGATTAGTGGAGGAGG 59.286 50.000 6.95 0.00 46.87 4.30
62 63 5.519263 GGATCCATAGATTAGTGGAGGAGGA 60.519 48.000 6.95 0.00 46.87 3.71
63 64 5.004361 TCCATAGATTAGTGGAGGAGGAG 57.996 47.826 0.00 0.00 39.51 3.69
64 65 4.093011 CCATAGATTAGTGGAGGAGGAGG 58.907 52.174 0.00 0.00 37.72 4.30
65 66 2.785357 AGATTAGTGGAGGAGGAGGG 57.215 55.000 0.00 0.00 0.00 4.30
66 67 2.227703 AGATTAGTGGAGGAGGAGGGA 58.772 52.381 0.00 0.00 0.00 4.20
67 68 2.178984 AGATTAGTGGAGGAGGAGGGAG 59.821 54.545 0.00 0.00 0.00 4.30
68 69 1.695065 TTAGTGGAGGAGGAGGGAGA 58.305 55.000 0.00 0.00 0.00 3.71
69 70 1.928480 TAGTGGAGGAGGAGGGAGAT 58.072 55.000 0.00 0.00 0.00 2.75
70 71 0.560688 AGTGGAGGAGGAGGGAGATC 59.439 60.000 0.00 0.00 0.00 2.75
71 72 0.825840 GTGGAGGAGGAGGGAGATCG 60.826 65.000 0.00 0.00 0.00 3.69
72 73 1.906333 GGAGGAGGAGGGAGATCGC 60.906 68.421 0.00 0.00 0.00 4.58
73 74 1.152830 GAGGAGGAGGGAGATCGCT 59.847 63.158 0.00 0.00 42.17 4.93
74 75 1.152567 AGGAGGAGGGAGATCGCTG 60.153 63.158 3.90 0.00 39.39 5.18
75 76 2.206536 GGAGGAGGGAGATCGCTGG 61.207 68.421 3.90 0.00 39.39 4.85
76 77 1.152652 GAGGAGGGAGATCGCTGGA 60.153 63.158 3.90 0.00 39.39 3.86
77 78 1.152567 AGGAGGGAGATCGCTGGAG 60.153 63.158 3.90 0.00 39.39 3.86
78 79 1.152652 GGAGGGAGATCGCTGGAGA 60.153 63.158 3.90 0.00 39.39 3.71
79 80 0.541764 GGAGGGAGATCGCTGGAGAT 60.542 60.000 3.90 0.00 39.39 2.75
80 81 0.602562 GAGGGAGATCGCTGGAGATG 59.397 60.000 3.90 0.00 39.39 2.90
81 82 0.831288 AGGGAGATCGCTGGAGATGG 60.831 60.000 0.00 0.00 37.77 3.51
82 83 1.670590 GGAGATCGCTGGAGATGGG 59.329 63.158 0.00 0.00 0.00 4.00
83 84 1.670590 GAGATCGCTGGAGATGGGG 59.329 63.158 0.00 0.00 0.00 4.96
84 85 0.829602 GAGATCGCTGGAGATGGGGA 60.830 60.000 0.00 0.00 0.00 4.81
85 86 1.118356 AGATCGCTGGAGATGGGGAC 61.118 60.000 0.00 0.00 0.00 4.46
167 168 4.716784 TGAGTATAATTGGTGCTCTGTCCT 59.283 41.667 10.48 0.00 30.78 3.85
301 302 3.156293 CCTGTTGTCAATTGGACCATCA 58.844 45.455 5.42 5.24 46.38 3.07
327 328 2.867624 AGCTTTCTGATGTGAAGGCAA 58.132 42.857 12.46 0.00 46.88 4.52
355 356 5.316167 TGATACTTGGAACTTTGCATGACT 58.684 37.500 0.00 0.00 0.00 3.41
363 364 6.711277 TGGAACTTTGCATGACTAGTAGATT 58.289 36.000 3.59 0.00 0.00 2.40
404 405 7.136822 TGCATATCAACTAGATAAGGGTTGT 57.863 36.000 0.00 0.00 42.27 3.32
421 422 4.643334 GGGTTGTCTGTTCCTGTAGTTTTT 59.357 41.667 0.00 0.00 0.00 1.94
445 446 6.409524 TGATATGCAATTTTCCTTGGATCC 57.590 37.500 4.20 4.20 38.09 3.36
476 477 9.802039 AACCTCTACAAAACTATGTTTTCCATA 57.198 29.630 5.57 0.30 34.86 2.74
538 539 9.888878 CAGTTGTATATGAATTAATCAGGCTTG 57.111 33.333 0.00 0.00 42.53 4.01
611 612 7.871973 TGCATGTTAAGCTGATGTAATTTGTTT 59.128 29.630 0.00 0.00 0.00 2.83
620 621 7.394359 AGCTGATGTAATTTGTTTGGTAGACAT 59.606 33.333 0.00 0.00 0.00 3.06
621 622 8.028938 GCTGATGTAATTTGTTTGGTAGACATT 58.971 33.333 0.00 0.00 0.00 2.71
622 623 9.345517 CTGATGTAATTTGTTTGGTAGACATTG 57.654 33.333 0.00 0.00 0.00 2.82
623 624 9.072375 TGATGTAATTTGTTTGGTAGACATTGA 57.928 29.630 0.00 0.00 0.00 2.57
624 625 9.341899 GATGTAATTTGTTTGGTAGACATTGAC 57.658 33.333 0.00 0.00 0.00 3.18
625 626 7.653647 TGTAATTTGTTTGGTAGACATTGACC 58.346 34.615 0.00 0.00 36.17 4.02
626 627 6.723298 AATTTGTTTGGTAGACATTGACCA 57.277 33.333 0.00 0.00 44.08 4.02
627 628 5.766150 TTTGTTTGGTAGACATTGACCAG 57.234 39.130 0.00 0.00 46.23 4.00
628 629 4.698201 TGTTTGGTAGACATTGACCAGA 57.302 40.909 0.00 0.00 46.23 3.86
629 630 4.385825 TGTTTGGTAGACATTGACCAGAC 58.614 43.478 7.57 7.57 46.23 3.51
630 631 4.385825 GTTTGGTAGACATTGACCAGACA 58.614 43.478 9.22 0.00 45.62 3.41
631 632 4.908601 TTGGTAGACATTGACCAGACAT 57.091 40.909 0.00 0.00 46.23 3.06
632 633 4.206477 TGGTAGACATTGACCAGACATG 57.794 45.455 0.00 0.00 40.87 3.21
633 634 3.837731 TGGTAGACATTGACCAGACATGA 59.162 43.478 0.00 0.00 40.87 3.07
634 635 4.471025 TGGTAGACATTGACCAGACATGAT 59.529 41.667 0.00 0.00 40.87 2.45
635 636 5.045651 TGGTAGACATTGACCAGACATGATT 60.046 40.000 0.00 0.00 40.87 2.57
636 637 5.525378 GGTAGACATTGACCAGACATGATTC 59.475 44.000 0.00 0.00 35.65 2.52
637 638 5.432680 AGACATTGACCAGACATGATTCT 57.567 39.130 0.00 0.00 0.00 2.40
638 639 5.183969 AGACATTGACCAGACATGATTCTG 58.816 41.667 0.00 2.67 42.46 3.02
639 640 5.046087 AGACATTGACCAGACATGATTCTGA 60.046 40.000 13.48 0.00 45.19 3.27
640 641 5.752650 ACATTGACCAGACATGATTCTGAT 58.247 37.500 13.48 0.00 45.19 2.90
641 642 5.821470 ACATTGACCAGACATGATTCTGATC 59.179 40.000 13.48 7.64 45.19 2.92
642 643 5.425196 TTGACCAGACATGATTCTGATCA 57.575 39.130 13.48 9.98 43.37 2.92
643 644 5.019785 TGACCAGACATGATTCTGATCAG 57.980 43.478 17.07 17.07 40.67 2.90
644 645 4.141779 TGACCAGACATGATTCTGATCAGG 60.142 45.833 22.42 7.80 40.67 3.86
645 646 4.035814 ACCAGACATGATTCTGATCAGGA 58.964 43.478 22.42 15.21 44.66 3.86
646 647 4.659368 ACCAGACATGATTCTGATCAGGAT 59.341 41.667 22.42 19.76 44.66 3.24
647 648 5.842874 ACCAGACATGATTCTGATCAGGATA 59.157 40.000 22.42 8.89 44.66 2.59
648 649 6.328410 ACCAGACATGATTCTGATCAGGATAA 59.672 38.462 22.42 13.35 44.66 1.75
649 650 7.017353 ACCAGACATGATTCTGATCAGGATAAT 59.983 37.037 22.42 15.16 44.66 1.28
650 651 7.549842 CCAGACATGATTCTGATCAGGATAATC 59.450 40.741 22.42 21.44 44.66 1.75
651 652 8.095169 CAGACATGATTCTGATCAGGATAATCA 58.905 37.037 27.40 27.40 44.66 2.57
652 653 8.827758 AGACATGATTCTGATCAGGATAATCAT 58.172 33.333 28.62 28.62 44.66 2.45
653 654 9.100554 GACATGATTCTGATCAGGATAATCATC 57.899 37.037 30.09 22.98 44.66 2.92
654 655 8.827758 ACATGATTCTGATCAGGATAATCATCT 58.172 33.333 30.09 22.78 44.66 2.90
655 656 9.674068 CATGATTCTGATCAGGATAATCATCTT 57.326 33.333 30.09 18.45 44.66 2.40
657 658 9.503399 TGATTCTGATCAGGATAATCATCTTTG 57.497 33.333 24.09 0.00 37.37 2.77
658 659 7.741027 TTCTGATCAGGATAATCATCTTTGC 57.259 36.000 22.42 0.00 32.91 3.68
659 660 6.834107 TCTGATCAGGATAATCATCTTTGCA 58.166 36.000 22.42 0.00 32.91 4.08
660 661 7.459234 TCTGATCAGGATAATCATCTTTGCAT 58.541 34.615 22.42 0.00 32.91 3.96
661 662 7.942894 TCTGATCAGGATAATCATCTTTGCATT 59.057 33.333 22.42 0.00 32.91 3.56
662 663 9.227777 CTGATCAGGATAATCATCTTTGCATTA 57.772 33.333 15.38 0.00 32.91 1.90
663 664 9.577222 TGATCAGGATAATCATCTTTGCATTAA 57.423 29.630 0.00 0.00 0.00 1.40
667 668 9.635520 CAGGATAATCATCTTTGCATTAATTCC 57.364 33.333 0.00 0.00 0.00 3.01
668 669 9.597681 AGGATAATCATCTTTGCATTAATTCCT 57.402 29.630 0.00 0.00 0.00 3.36
669 670 9.852091 GGATAATCATCTTTGCATTAATTCCTC 57.148 33.333 0.00 0.00 0.00 3.71
673 674 9.760077 AATCATCTTTGCATTAATTCCTCAATC 57.240 29.630 0.00 0.00 0.00 2.67
674 675 8.529424 TCATCTTTGCATTAATTCCTCAATCT 57.471 30.769 0.00 0.00 0.00 2.40
675 676 9.631257 TCATCTTTGCATTAATTCCTCAATCTA 57.369 29.630 0.00 0.00 0.00 1.98
676 677 9.674824 CATCTTTGCATTAATTCCTCAATCTAC 57.325 33.333 0.00 0.00 0.00 2.59
677 678 8.806429 TCTTTGCATTAATTCCTCAATCTACA 57.194 30.769 0.00 0.00 0.00 2.74
678 679 9.241919 TCTTTGCATTAATTCCTCAATCTACAA 57.758 29.630 0.00 0.00 0.00 2.41
732 2943 2.024176 ACAGCGGATTGTATGGTGTC 57.976 50.000 0.00 0.00 39.95 3.67
750 2961 7.921786 TGGTGTCTCATTTCCATACTTTAAG 57.078 36.000 0.00 0.00 0.00 1.85
774 2985 0.533531 TGGCTGCGATCTATGGCAAG 60.534 55.000 0.00 0.00 40.95 4.01
789 3000 1.410153 GGCAAGGATATTGCAACAGGG 59.590 52.381 13.94 0.00 46.58 4.45
801 3012 1.242076 CAACAGGGGAAAGTGCTGAG 58.758 55.000 0.00 0.00 0.00 3.35
813 3024 0.250901 GTGCTGAGGGCTTTGGAGAA 60.251 55.000 0.00 0.00 42.39 2.87
816 3027 1.003355 TGAGGGCTTTGGAGAAGCG 60.003 57.895 4.85 0.00 43.89 4.68
831 3042 0.106419 AAGCGGTGGGAAACTTGGAA 60.106 50.000 0.00 0.00 0.00 3.53
864 3075 6.484288 TGCTATGGAGGAAGAAGAAAATGAA 58.516 36.000 0.00 0.00 0.00 2.57
876 3087 9.442047 GAAGAAGAAAATGAAGAAGAGGACATA 57.558 33.333 0.00 0.00 0.00 2.29
888 3099 7.072263 AGAAGAGGACATAATATCAACAGGG 57.928 40.000 0.00 0.00 0.00 4.45
895 3106 6.239600 GGACATAATATCAACAGGGACAGCTA 60.240 42.308 0.00 0.00 0.00 3.32
900 3111 2.820178 TCAACAGGGACAGCTAGATGA 58.180 47.619 16.32 0.00 0.00 2.92
912 3123 4.063689 CAGCTAGATGATCCATTGACACC 58.936 47.826 0.40 0.00 0.00 4.16
913 3124 3.072184 AGCTAGATGATCCATTGACACCC 59.928 47.826 0.00 0.00 0.00 4.61
914 3125 3.181451 GCTAGATGATCCATTGACACCCA 60.181 47.826 0.00 0.00 0.00 4.51
920 3131 3.197766 TGATCCATTGACACCCACTCTAC 59.802 47.826 0.00 0.00 0.00 2.59
924 3135 3.007940 CCATTGACACCCACTCTACTGAA 59.992 47.826 0.00 0.00 0.00 3.02
936 3147 5.927115 CCACTCTACTGAAACAACTAGTTCC 59.073 44.000 4.77 0.00 40.26 3.62
948 3159 3.971245 ACTAGTTCCAAGAGGCAGAAG 57.029 47.619 0.00 0.00 33.74 2.85
954 3165 2.338809 TCCAAGAGGCAGAAGAAGGAA 58.661 47.619 0.00 0.00 33.74 3.36
969 3180 1.149101 AGGAACCAAGGCCAAAGAGA 58.851 50.000 5.01 0.00 0.00 3.10
990 3201 2.683933 ACGGGACCAAGCGATCCT 60.684 61.111 0.00 0.00 35.15 3.24
998 3210 1.167851 CCAAGCGATCCTTTTGCAGA 58.832 50.000 0.00 0.00 37.17 4.26
1057 3269 0.457035 GCAGCATGTGGGTACAATGG 59.543 55.000 0.00 0.00 40.84 3.16
1062 3274 2.170166 CATGTGGGTACAATGGCAACT 58.830 47.619 0.00 0.00 40.84 3.16
1078 3290 2.658285 CAACTTCATTCACAGCAGCAC 58.342 47.619 0.00 0.00 0.00 4.40
1131 3343 5.010012 TCAACAGAAATCAAGAGAAAAGGCC 59.990 40.000 0.00 0.00 0.00 5.19
1135 3347 5.867716 CAGAAATCAAGAGAAAAGGCCATTG 59.132 40.000 5.01 0.00 0.00 2.82
1144 3356 3.903090 AGAAAAGGCCATTGGTGAATTGA 59.097 39.130 5.01 0.00 0.00 2.57
1145 3357 3.967332 AAAGGCCATTGGTGAATTGAG 57.033 42.857 5.01 0.00 0.00 3.02
1153 3365 4.463891 CCATTGGTGAATTGAGTAGGCTTT 59.536 41.667 0.00 0.00 0.00 3.51
1155 3367 3.686016 TGGTGAATTGAGTAGGCTTTCC 58.314 45.455 0.00 0.00 0.00 3.13
1158 3370 4.396478 GGTGAATTGAGTAGGCTTTCCTTC 59.604 45.833 0.00 0.00 40.66 3.46
1161 3373 2.743636 TGAGTAGGCTTTCCTTCACG 57.256 50.000 0.00 0.00 40.66 4.35
1179 3391 0.807667 CGGGGAGCGAGATTGTTGAG 60.808 60.000 0.00 0.00 0.00 3.02
1188 3400 1.200948 GAGATTGTTGAGGCTGCAACC 59.799 52.381 19.85 0.00 45.75 3.77
1194 3406 3.164268 TGTTGAGGCTGCAACCATATTT 58.836 40.909 19.85 0.00 45.75 1.40
1233 3445 4.011698 ACATGAACATGATGCTTGTGCTA 58.988 39.130 19.56 0.00 41.20 3.49
1239 3451 2.857186 TGATGCTTGTGCTACCAGAA 57.143 45.000 0.00 0.00 40.48 3.02
1240 3452 2.703416 TGATGCTTGTGCTACCAGAAG 58.297 47.619 0.00 0.00 43.23 2.85
1631 4473 5.421056 CCCCTCCTTTTCCTTATTGTTAACC 59.579 44.000 2.48 0.00 0.00 2.85
1757 4601 4.857871 TCGGTTCATTTGAATAAGCTCG 57.142 40.909 0.00 0.00 36.33 5.03
1781 4625 7.378461 TCGTCTAATGCAATGAACAAAAGAAAC 59.622 33.333 0.00 0.00 0.00 2.78
1918 4772 5.102953 TCTACCAGCAAATGTGAGCTATT 57.897 39.130 0.00 0.00 39.50 1.73
1926 4780 4.734695 GCAAATGTGAGCTATTTGTAGGCC 60.735 45.833 17.55 0.00 43.80 5.19
2238 5121 7.556844 TCTGAGTTTGTATCCAGAGGTTAATC 58.443 38.462 0.00 0.00 32.51 1.75
2304 5187 9.528489 AATTCTGGTTAAAAGGTATCTTTGCTA 57.472 29.630 0.68 0.00 41.92 3.49
2445 5411 3.244078 TGTGCTCTGTACGTGGAATTCTT 60.244 43.478 5.23 0.00 0.00 2.52
2446 5412 3.123621 GTGCTCTGTACGTGGAATTCTTG 59.876 47.826 5.23 0.00 0.00 3.02
2480 5446 6.597280 TGCTGATGTATTTGTATTACTGTGCA 59.403 34.615 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.481854 CGGCATCTTCTCTGGATCAAG 58.518 52.381 0.00 0.00 0.00 3.02
1 2 1.139654 CCGGCATCTTCTCTGGATCAA 59.860 52.381 0.00 0.00 0.00 2.57
2 3 0.755079 CCGGCATCTTCTCTGGATCA 59.245 55.000 0.00 0.00 0.00 2.92
6 7 0.539051 AACTCCGGCATCTTCTCTGG 59.461 55.000 0.00 0.00 0.00 3.86
7 8 1.066573 ACAACTCCGGCATCTTCTCTG 60.067 52.381 0.00 0.00 0.00 3.35
8 9 1.270907 ACAACTCCGGCATCTTCTCT 58.729 50.000 0.00 0.00 0.00 3.10
9 10 1.734465 CAACAACTCCGGCATCTTCTC 59.266 52.381 0.00 0.00 0.00 2.87
10 11 1.347707 TCAACAACTCCGGCATCTTCT 59.652 47.619 0.00 0.00 0.00 2.85
11 12 1.808411 TCAACAACTCCGGCATCTTC 58.192 50.000 0.00 0.00 0.00 2.87
12 13 2.359900 GATCAACAACTCCGGCATCTT 58.640 47.619 0.00 0.00 0.00 2.40
13 14 1.740380 CGATCAACAACTCCGGCATCT 60.740 52.381 0.00 0.00 0.00 2.90
14 15 0.652592 CGATCAACAACTCCGGCATC 59.347 55.000 0.00 0.00 0.00 3.91
15 16 0.744414 CCGATCAACAACTCCGGCAT 60.744 55.000 0.00 0.00 33.47 4.40
16 17 1.375396 CCGATCAACAACTCCGGCA 60.375 57.895 0.00 0.00 33.47 5.69
17 18 1.079405 TCCGATCAACAACTCCGGC 60.079 57.895 0.00 0.00 39.96 6.13
18 19 0.530744 TCTCCGATCAACAACTCCGG 59.469 55.000 0.00 0.00 41.36 5.14
19 20 1.469940 CCTCTCCGATCAACAACTCCG 60.470 57.143 0.00 0.00 0.00 4.63
20 21 1.825474 TCCTCTCCGATCAACAACTCC 59.175 52.381 0.00 0.00 0.00 3.85
21 22 3.491792 GGATCCTCTCCGATCAACAACTC 60.492 52.174 3.84 0.00 40.45 3.01
22 23 2.432510 GGATCCTCTCCGATCAACAACT 59.567 50.000 3.84 0.00 40.45 3.16
23 24 2.827652 GGATCCTCTCCGATCAACAAC 58.172 52.381 3.84 0.00 40.45 3.32
33 34 5.584913 TCCACTAATCTATGGATCCTCTCC 58.415 45.833 14.23 0.00 40.17 3.71
34 35 5.656416 CCTCCACTAATCTATGGATCCTCTC 59.344 48.000 14.23 0.00 44.06 3.20
35 36 5.317262 TCCTCCACTAATCTATGGATCCTCT 59.683 44.000 14.23 2.82 44.06 3.69
36 37 5.584913 TCCTCCACTAATCTATGGATCCTC 58.415 45.833 14.23 0.00 44.06 3.71
37 38 5.519982 CCTCCTCCACTAATCTATGGATCCT 60.520 48.000 14.23 0.89 44.06 3.24
38 39 4.714308 CCTCCTCCACTAATCTATGGATCC 59.286 50.000 4.20 4.20 44.06 3.36
39 40 5.584913 TCCTCCTCCACTAATCTATGGATC 58.415 45.833 0.00 0.00 44.06 3.36
40 41 5.519982 CCTCCTCCTCCACTAATCTATGGAT 60.520 48.000 0.00 0.00 44.06 3.41
41 42 4.202727 CCTCCTCCTCCACTAATCTATGGA 60.203 50.000 0.00 0.00 42.88 3.41
42 43 4.093011 CCTCCTCCTCCACTAATCTATGG 58.907 52.174 0.00 0.00 37.32 2.74
43 44 4.093011 CCCTCCTCCTCCACTAATCTATG 58.907 52.174 0.00 0.00 0.00 2.23
44 45 3.997856 TCCCTCCTCCTCCACTAATCTAT 59.002 47.826 0.00 0.00 0.00 1.98
45 46 3.399644 CTCCCTCCTCCTCCACTAATCTA 59.600 52.174 0.00 0.00 0.00 1.98
46 47 2.178984 CTCCCTCCTCCTCCACTAATCT 59.821 54.545 0.00 0.00 0.00 2.40
47 48 2.178106 TCTCCCTCCTCCTCCACTAATC 59.822 54.545 0.00 0.00 0.00 1.75
48 49 2.227703 TCTCCCTCCTCCTCCACTAAT 58.772 52.381 0.00 0.00 0.00 1.73
49 50 1.695065 TCTCCCTCCTCCTCCACTAA 58.305 55.000 0.00 0.00 0.00 2.24
50 51 1.783979 GATCTCCCTCCTCCTCCACTA 59.216 57.143 0.00 0.00 0.00 2.74
51 52 0.560688 GATCTCCCTCCTCCTCCACT 59.439 60.000 0.00 0.00 0.00 4.00
52 53 0.825840 CGATCTCCCTCCTCCTCCAC 60.826 65.000 0.00 0.00 0.00 4.02
53 54 1.539165 CGATCTCCCTCCTCCTCCA 59.461 63.158 0.00 0.00 0.00 3.86
54 55 1.906333 GCGATCTCCCTCCTCCTCC 60.906 68.421 0.00 0.00 0.00 4.30
55 56 1.152830 AGCGATCTCCCTCCTCCTC 59.847 63.158 0.00 0.00 0.00 3.71
56 57 1.152567 CAGCGATCTCCCTCCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
57 58 2.206536 CCAGCGATCTCCCTCCTCC 61.207 68.421 0.00 0.00 0.00 4.30
58 59 1.152652 TCCAGCGATCTCCCTCCTC 60.153 63.158 0.00 0.00 0.00 3.71
59 60 1.152567 CTCCAGCGATCTCCCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
60 61 0.541764 ATCTCCAGCGATCTCCCTCC 60.542 60.000 0.00 0.00 0.00 4.30
61 62 0.602562 CATCTCCAGCGATCTCCCTC 59.397 60.000 0.00 0.00 0.00 4.30
62 63 0.831288 CCATCTCCAGCGATCTCCCT 60.831 60.000 0.00 0.00 0.00 4.20
63 64 1.670590 CCATCTCCAGCGATCTCCC 59.329 63.158 0.00 0.00 0.00 4.30
64 65 1.670590 CCCATCTCCAGCGATCTCC 59.329 63.158 0.00 0.00 0.00 3.71
65 66 0.829602 TCCCCATCTCCAGCGATCTC 60.830 60.000 0.00 0.00 0.00 2.75
66 67 1.118356 GTCCCCATCTCCAGCGATCT 61.118 60.000 0.00 0.00 0.00 2.75
67 68 1.369321 GTCCCCATCTCCAGCGATC 59.631 63.158 0.00 0.00 0.00 3.69
68 69 1.383109 TGTCCCCATCTCCAGCGAT 60.383 57.895 0.00 0.00 0.00 4.58
69 70 2.038813 TGTCCCCATCTCCAGCGA 59.961 61.111 0.00 0.00 0.00 4.93
70 71 2.362369 ACTGTCCCCATCTCCAGCG 61.362 63.158 0.00 0.00 0.00 5.18
71 72 1.222936 CACTGTCCCCATCTCCAGC 59.777 63.158 0.00 0.00 0.00 4.85
72 73 1.222936 GCACTGTCCCCATCTCCAG 59.777 63.158 0.00 0.00 0.00 3.86
73 74 2.300967 GGCACTGTCCCCATCTCCA 61.301 63.158 0.00 0.00 0.00 3.86
74 75 2.592308 GGCACTGTCCCCATCTCC 59.408 66.667 0.00 0.00 0.00 3.71
75 76 2.187946 CGGCACTGTCCCCATCTC 59.812 66.667 0.00 0.00 0.00 2.75
76 77 2.607750 ACGGCACTGTCCCCATCT 60.608 61.111 0.00 0.00 0.00 2.90
77 78 2.436646 CACGGCACTGTCCCCATC 60.437 66.667 0.00 0.00 0.00 3.51
78 79 4.033776 CCACGGCACTGTCCCCAT 62.034 66.667 0.00 0.00 0.00 4.00
104 105 3.880846 CAATCGGCAAGGCGCTCC 61.881 66.667 7.64 2.76 41.91 4.70
105 106 4.543084 GCAATCGGCAAGGCGCTC 62.543 66.667 7.64 0.00 43.97 5.03
144 145 4.716784 AGGACAGAGCACCAATTATACTCA 59.283 41.667 0.00 0.00 0.00 3.41
231 232 3.565307 TCCTTTTTGTGATCAGCCAACT 58.435 40.909 0.00 0.00 0.00 3.16
301 302 5.356470 GCCTTCACATCAGAAAGCTAAAGAT 59.644 40.000 0.00 0.00 33.30 2.40
327 328 5.324409 TGCAAAGTTCCAAGTATCAGGATT 58.676 37.500 0.00 0.00 33.10 3.01
355 356 6.066032 TGTGGATATCACCGTCAATCTACTA 58.934 40.000 4.83 0.00 45.48 1.82
363 364 1.484240 TGCATGTGGATATCACCGTCA 59.516 47.619 4.83 0.00 45.48 4.35
397 398 2.690840 ACTACAGGAACAGACAACCCT 58.309 47.619 0.00 0.00 0.00 4.34
421 422 6.383436 TGGATCCAAGGAAAATTGCATATCAA 59.617 34.615 13.46 0.00 39.32 2.57
472 473 4.201940 TGCAAGTTCGCATCAGAAATATGG 60.202 41.667 0.00 0.00 36.86 2.74
476 477 2.413239 CGTGCAAGTTCGCATCAGAAAT 60.413 45.455 0.00 0.00 45.26 2.17
525 526 4.018490 TGCACATCACAAGCCTGATTAAT 58.982 39.130 0.00 0.00 0.00 1.40
531 532 0.956633 ACTTGCACATCACAAGCCTG 59.043 50.000 3.52 0.00 46.81 4.85
538 539 5.807011 GGATCCAAATAAACTTGCACATCAC 59.193 40.000 6.95 0.00 0.00 3.06
611 612 3.837731 TCATGTCTGGTCAATGTCTACCA 59.162 43.478 0.00 0.00 43.47 3.25
623 624 4.035814 TCCTGATCAGAATCATGTCTGGT 58.964 43.478 24.62 6.20 44.40 4.00
624 625 4.684484 TCCTGATCAGAATCATGTCTGG 57.316 45.455 24.62 3.55 44.40 3.86
625 626 8.095169 TGATTATCCTGATCAGAATCATGTCTG 58.905 37.037 24.09 6.94 45.44 3.51
626 627 8.203681 TGATTATCCTGATCAGAATCATGTCT 57.796 34.615 24.09 4.69 41.05 3.41
627 628 9.100554 GATGATTATCCTGATCAGAATCATGTC 57.899 37.037 33.93 24.96 43.72 3.06
628 629 8.827758 AGATGATTATCCTGATCAGAATCATGT 58.172 33.333 33.93 30.14 43.72 3.21
629 630 9.674068 AAGATGATTATCCTGATCAGAATCATG 57.326 33.333 33.93 17.43 43.72 3.07
631 632 9.503399 CAAAGATGATTATCCTGATCAGAATCA 57.497 33.333 27.40 27.40 39.95 2.57
632 633 8.452534 GCAAAGATGATTATCCTGATCAGAATC 58.547 37.037 24.62 22.27 36.99 2.52
633 634 7.942894 TGCAAAGATGATTATCCTGATCAGAAT 59.057 33.333 24.62 12.49 36.99 2.40
634 635 7.284820 TGCAAAGATGATTATCCTGATCAGAA 58.715 34.615 24.62 3.49 36.99 3.02
635 636 6.834107 TGCAAAGATGATTATCCTGATCAGA 58.166 36.000 24.62 10.55 36.99 3.27
636 637 7.689446 ATGCAAAGATGATTATCCTGATCAG 57.311 36.000 16.24 16.24 36.99 2.90
637 638 9.577222 TTAATGCAAAGATGATTATCCTGATCA 57.423 29.630 0.00 0.00 37.86 2.92
641 642 9.635520 GGAATTAATGCAAAGATGATTATCCTG 57.364 33.333 0.00 0.00 33.64 3.86
642 643 9.597681 AGGAATTAATGCAAAGATGATTATCCT 57.402 29.630 0.00 0.00 33.64 3.24
643 644 9.852091 GAGGAATTAATGCAAAGATGATTATCC 57.148 33.333 0.00 0.00 33.64 2.59
647 648 9.760077 GATTGAGGAATTAATGCAAAGATGATT 57.240 29.630 0.00 0.00 0.00 2.57
648 649 9.144298 AGATTGAGGAATTAATGCAAAGATGAT 57.856 29.630 0.00 0.00 0.00 2.45
649 650 8.529424 AGATTGAGGAATTAATGCAAAGATGA 57.471 30.769 0.00 0.00 0.00 2.92
650 651 9.674824 GTAGATTGAGGAATTAATGCAAAGATG 57.325 33.333 0.00 0.00 0.00 2.90
651 652 9.412460 TGTAGATTGAGGAATTAATGCAAAGAT 57.588 29.630 0.00 0.00 0.00 2.40
652 653 8.806429 TGTAGATTGAGGAATTAATGCAAAGA 57.194 30.769 0.00 0.00 0.00 2.52
732 2943 7.223387 GCCAATTGCTTAAAGTATGGAAATGAG 59.777 37.037 0.00 0.00 36.87 2.90
750 2961 1.068748 CCATAGATCGCAGCCAATTGC 60.069 52.381 0.00 0.00 40.67 3.56
762 2973 5.474532 TGTTGCAATATCCTTGCCATAGATC 59.525 40.000 0.59 0.00 44.32 2.75
774 2985 3.131046 CACTTTCCCCTGTTGCAATATCC 59.869 47.826 0.59 0.00 0.00 2.59
801 3012 2.034221 ACCGCTTCTCCAAAGCCC 59.966 61.111 4.33 0.00 40.02 5.19
813 3024 0.106419 TTTCCAAGTTTCCCACCGCT 60.106 50.000 0.00 0.00 0.00 5.52
816 3027 2.673258 TCCTTTTCCAAGTTTCCCACC 58.327 47.619 0.00 0.00 0.00 4.61
831 3042 5.831103 TCTTCCTCCATAGCAATTTCCTTT 58.169 37.500 0.00 0.00 0.00 3.11
864 3075 6.846505 TCCCTGTTGATATTATGTCCTCTTCT 59.153 38.462 0.00 0.00 0.00 2.85
876 3087 5.604231 TCATCTAGCTGTCCCTGTTGATATT 59.396 40.000 0.00 0.00 0.00 1.28
879 3090 3.378512 TCATCTAGCTGTCCCTGTTGAT 58.621 45.455 0.00 0.00 0.00 2.57
888 3099 4.749099 GTGTCAATGGATCATCTAGCTGTC 59.251 45.833 0.00 0.00 0.00 3.51
895 3106 2.848694 AGTGGGTGTCAATGGATCATCT 59.151 45.455 0.00 0.00 0.00 2.90
900 3111 3.198635 CAGTAGAGTGGGTGTCAATGGAT 59.801 47.826 0.00 0.00 0.00 3.41
912 3123 5.927115 GGAACTAGTTGTTTCAGTAGAGTGG 59.073 44.000 14.14 0.00 39.30 4.00
913 3124 6.513180 TGGAACTAGTTGTTTCAGTAGAGTG 58.487 40.000 14.14 0.00 39.12 3.51
914 3125 6.726490 TGGAACTAGTTGTTTCAGTAGAGT 57.274 37.500 14.14 0.00 39.12 3.24
920 3131 4.214332 GCCTCTTGGAACTAGTTGTTTCAG 59.786 45.833 14.14 3.39 44.25 3.02
924 3135 3.391296 TCTGCCTCTTGGAACTAGTTGTT 59.609 43.478 14.14 0.00 42.38 2.83
936 3147 2.224621 TGGTTCCTTCTTCTGCCTCTTG 60.225 50.000 0.00 0.00 0.00 3.02
948 3159 1.889170 CTCTTTGGCCTTGGTTCCTTC 59.111 52.381 3.32 0.00 0.00 3.46
954 3165 1.302832 CGCTCTCTTTGGCCTTGGT 60.303 57.895 3.32 0.00 0.00 3.67
998 3210 4.337555 GGCTATTGACATCTTGAAGCATGT 59.662 41.667 9.09 9.09 35.88 3.21
1038 3250 0.457035 CCATTGTACCCACATGCTGC 59.543 55.000 0.00 0.00 33.76 5.25
1041 3253 0.894141 TTGCCATTGTACCCACATGC 59.106 50.000 0.00 0.00 33.76 4.06
1051 3263 3.553508 GCTGTGAATGAAGTTGCCATTGT 60.554 43.478 0.00 0.00 34.67 2.71
1057 3269 1.001048 TGCTGCTGTGAATGAAGTTGC 60.001 47.619 0.00 0.00 0.00 4.17
1062 3274 1.241165 CCAGTGCTGCTGTGAATGAA 58.759 50.000 0.00 0.00 43.55 2.57
1078 3290 2.357881 TGCTGCTTCTCGCACCAG 60.358 61.111 0.00 0.00 45.47 4.00
1101 3313 4.006319 CTCTTGATTTCTGTTGAGGGTCC 58.994 47.826 0.00 0.00 0.00 4.46
1131 3343 5.393461 GGAAAGCCTACTCAATTCACCAATG 60.393 44.000 0.00 0.00 0.00 2.82
1135 3347 3.956744 AGGAAAGCCTACTCAATTCACC 58.043 45.455 0.00 0.00 44.74 4.02
1144 3356 0.613777 CCCGTGAAGGAAAGCCTACT 59.386 55.000 0.00 0.00 46.28 2.57
1145 3357 0.392595 CCCCGTGAAGGAAAGCCTAC 60.393 60.000 0.00 0.00 46.28 3.18
1153 3365 2.856039 ATCTCGCTCCCCGTGAAGGA 62.856 60.000 0.00 0.00 45.00 3.36
1155 3367 0.807667 CAATCTCGCTCCCCGTGAAG 60.808 60.000 0.00 0.00 41.98 3.02
1158 3370 1.079127 AACAATCTCGCTCCCCGTG 60.079 57.895 0.00 0.00 38.35 4.94
1161 3373 0.462759 CCTCAACAATCTCGCTCCCC 60.463 60.000 0.00 0.00 0.00 4.81
1233 3445 1.150135 TCCCTCCTCAGAACTTCTGGT 59.850 52.381 17.12 0.00 44.39 4.00
1239 3451 2.704190 TGAAGTCCCTCCTCAGAACT 57.296 50.000 0.00 0.00 0.00 3.01
1240 3452 2.169561 GGATGAAGTCCCTCCTCAGAAC 59.830 54.545 0.00 0.00 41.50 3.01
1579 4262 1.074775 ACACCAATCATGTGGCCGT 59.925 52.632 0.00 0.00 43.00 5.68
1631 4473 5.927689 ACCATGCATTCAACACATTTACAAG 59.072 36.000 0.00 0.00 0.00 3.16
1639 4482 4.284829 TCTCTACCATGCATTCAACACA 57.715 40.909 0.00 0.00 0.00 3.72
1757 4601 8.579682 AGTTTCTTTTGTTCATTGCATTAGAC 57.420 30.769 0.00 0.00 0.00 2.59
1918 4772 4.650972 AATTACTTGACCAGGCCTACAA 57.349 40.909 3.98 11.78 0.00 2.41
1926 4780 7.224362 TGTTCAATTGCAAAATTACTTGACCAG 59.776 33.333 1.71 0.00 0.00 4.00
2033 4895 3.805971 TGCTTATGTTCTCATCATCTGCG 59.194 43.478 0.00 0.00 35.70 5.18
2293 5176 4.216902 TGCATGCATCCATAGCAAAGATAC 59.783 41.667 18.46 0.00 46.27 2.24
2480 5446 7.287696 ACAGATCCCTTAACAATGTTTGTCTTT 59.712 33.333 3.17 0.00 44.59 2.52
2515 5481 5.634859 CCACATTTTGTTTGGTTCAGCTATC 59.365 40.000 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.