Multiple sequence alignment - TraesCS3B01G316900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G316900 chr3B 100.000 9483 0 0 1 9483 508698049 508707531 0.000000e+00 17512.0
1 TraesCS3B01G316900 chr3B 87.922 563 63 5 6238 6799 508704040 508704598 0.000000e+00 658.0
2 TraesCS3B01G316900 chr3B 87.922 563 63 5 5992 6550 508704286 508704847 0.000000e+00 658.0
3 TraesCS3B01G316900 chr3B 93.197 147 10 0 5992 6138 508703893 508704039 5.770000e-52 217.0
4 TraesCS3B01G316900 chr3B 93.197 147 10 0 5845 5991 508704040 508704186 5.770000e-52 217.0
5 TraesCS3B01G316900 chr3A 97.565 6118 117 7 2435 8541 511745302 511751398 0.000000e+00 10443.0
6 TraesCS3B01G316900 chr3A 97.193 1532 35 3 910 2438 511743663 511745189 0.000000e+00 2584.0
7 TraesCS3B01G316900 chr3A 95.117 471 23 0 9013 9483 511751970 511752440 0.000000e+00 743.0
8 TraesCS3B01G316900 chr3A 88.277 563 61 5 6238 6799 511748846 511749404 0.000000e+00 669.0
9 TraesCS3B01G316900 chr3A 87.567 563 65 5 5992 6550 511749092 511749653 0.000000e+00 647.0
10 TraesCS3B01G316900 chr3A 85.239 481 34 9 8542 8994 511751447 511751918 2.410000e-125 460.0
11 TraesCS3B01G316900 chr3A 86.787 333 41 1 5662 5991 511748909 511749241 1.500000e-97 368.0
12 TraesCS3B01G316900 chr3A 89.964 279 26 2 629 906 482445317 482445594 9.050000e-95 359.0
13 TraesCS3B01G316900 chr3A 90.119 253 15 6 394 639 511743412 511743661 4.270000e-83 320.0
14 TraesCS3B01G316900 chr3A 95.238 147 7 0 5845 5991 511748846 511748992 5.730000e-57 233.0
15 TraesCS3B01G316900 chr3A 92.517 147 11 0 5992 6138 511748699 511748845 2.680000e-50 211.0
16 TraesCS3B01G316900 chr3A 93.103 58 3 1 8772 8828 477794536 477794479 6.100000e-12 84.2
17 TraesCS3B01G316900 chr3D 97.293 4803 112 3 3748 8541 391591291 391596084 0.000000e+00 8133.0
18 TraesCS3B01G316900 chr3D 95.836 2858 73 19 910 3745 391588411 391591244 0.000000e+00 4577.0
19 TraesCS3B01G316900 chr3D 95.089 448 21 1 9036 9483 391596652 391597098 0.000000e+00 704.0
20 TraesCS3B01G316900 chr3D 88.277 563 61 5 6238 6799 391593541 391594099 0.000000e+00 669.0
21 TraesCS3B01G316900 chr3D 87.211 563 67 5 5992 6550 391593787 391594348 3.740000e-178 636.0
22 TraesCS3B01G316900 chr3D 86.755 453 30 5 8542 8994 391596133 391596555 2.400000e-130 477.0
23 TraesCS3B01G316900 chr3D 85.752 379 27 12 1 354 391587775 391588151 8.990000e-100 375.0
24 TraesCS3B01G316900 chr3D 91.971 274 10 4 376 639 391588138 391588409 3.230000e-99 374.0
25 TraesCS3B01G316900 chr3D 86.486 333 42 1 5662 5991 391593604 391593936 7.000000e-96 363.0
26 TraesCS3B01G316900 chr3D 95.238 147 7 0 5845 5991 391593541 391593687 5.730000e-57 233.0
27 TraesCS3B01G316900 chr3D 94.558 147 8 0 5992 6138 391593394 391593540 2.660000e-55 228.0
28 TraesCS3B01G316900 chr2B 92.509 267 19 1 644 909 425526063 425525797 1.930000e-101 381.0
29 TraesCS3B01G316900 chr2B 97.778 45 1 0 8772 8816 645479695 645479739 2.840000e-10 78.7
30 TraesCS3B01G316900 chr2A 90.942 276 24 1 639 913 107158959 107159234 4.180000e-98 370.0
31 TraesCS3B01G316900 chr2A 90.580 276 25 1 639 913 215849535 215849260 1.950000e-96 364.0
32 TraesCS3B01G316900 chr2A 90.809 272 23 2 641 911 33041077 33041347 7.000000e-96 363.0
33 TraesCS3B01G316900 chr7A 90.580 276 25 1 639 913 211572619 211572894 1.950000e-96 364.0
34 TraesCS3B01G316900 chr7A 89.493 276 28 1 639 913 432788897 432788622 1.960000e-91 348.0
35 TraesCS3B01G316900 chr4A 90.217 276 26 1 639 913 75613879 75614154 9.050000e-95 359.0
36 TraesCS3B01G316900 chr4A 89.855 276 27 1 639 913 423264913 423264638 4.210000e-93 353.0
37 TraesCS3B01G316900 chr1D 92.857 56 2 2 8772 8827 118887441 118887388 7.890000e-11 80.5
38 TraesCS3B01G316900 chr1A 90.164 61 4 2 8772 8830 129728214 129728274 2.840000e-10 78.7
39 TraesCS3B01G316900 chr5D 90.323 62 1 1 8772 8828 464690722 464690661 1.020000e-09 76.8
40 TraesCS3B01G316900 chr5D 100.000 31 0 0 221 251 238225412 238225382 3.700000e-04 58.4
41 TraesCS3B01G316900 chr6A 93.878 49 3 0 8772 8820 63587127 63587079 3.670000e-09 75.0
42 TraesCS3B01G316900 chr4D 88.889 63 4 2 8772 8831 94596279 94596341 3.670000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G316900 chr3B 508698049 508707531 9482 False 3852.400000 17512 92.447600 1 9483 5 chr3B.!!$F1 9482
1 TraesCS3B01G316900 chr3A 511743412 511752440 9028 False 1667.800000 10443 91.561900 394 9483 10 chr3A.!!$F2 9089
2 TraesCS3B01G316900 chr3D 391587775 391597098 9323 False 1524.454545 8133 91.315091 1 9483 11 chr3D.!!$F1 9482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 947 0.032615 TCACAAACCAAACAGCCCCT 60.033 50.000 0.00 0.00 0.00 4.79 F
1206 1246 2.750637 GAGGCTCCGAGGACGACA 60.751 66.667 2.15 0.00 42.66 4.35 F
2822 2999 0.038599 TGCCGGACTGTCTGGTAGTA 59.961 55.000 30.77 15.81 44.85 1.82 F
3672 3849 0.178935 CACATTCACCCCCAACCCTT 60.179 55.000 0.00 0.00 0.00 3.95 F
4175 4396 0.404426 TCTCTCTTCTCGTGGTGGGA 59.596 55.000 0.00 0.00 0.00 4.37 F
6078 6306 0.604578 AATGCAAGTGTCACCATGGC 59.395 50.000 13.04 0.00 0.00 4.40 F
6343 6571 0.941542 TGGCGAAAACTTGTCTTCCG 59.058 50.000 0.00 0.00 0.00 4.30 F
7236 7464 2.233271 CCAACAACAGAAGCAGGTGAT 58.767 47.619 0.00 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1907 0.974010 TGGACCTATCCTTCGCCGTT 60.974 55.000 0.00 0.0 46.43 4.44 R
3061 3238 0.949397 CACCATGGATTCATCGCCAG 59.051 55.000 21.47 0.0 37.64 4.85 R
4474 4696 0.250513 CAGTAAGTGGTCTGGGAGGC 59.749 60.000 0.00 0.0 0.00 4.70 R
5639 5867 2.082231 CAGACCATCAAACTCAGCAGG 58.918 52.381 0.00 0.0 0.00 4.85 R
6158 6386 1.743772 CGGATGGTTGCTAGGACAAGG 60.744 57.143 0.00 0.0 0.00 3.61 R
7305 7533 1.541588 GTCTCACAAAACCATCTGGGC 59.458 52.381 0.54 0.0 42.05 5.36 R
7772 8003 3.214328 AGTATTGGTTCCGATGAATGCC 58.786 45.455 2.08 0.0 31.98 4.40 R
8886 9193 2.000048 ACAGGAGGCCCCAGAAAATAA 59.000 47.619 12.24 0.0 37.41 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.632700 GCCGTTTAGCGTCACACA 58.367 55.556 0.00 0.00 39.32 3.72
59 60 2.219903 CGTTTAGCGTCACACATGTCAA 59.780 45.455 0.00 0.00 35.54 3.18
72 73 1.378382 TGTCAATGACATGCGGGGG 60.378 57.895 12.63 0.00 37.67 5.40
74 75 3.530260 CAATGACATGCGGGGGCC 61.530 66.667 0.00 0.00 0.00 5.80
75 76 3.743017 AATGACATGCGGGGGCCT 61.743 61.111 0.84 0.00 0.00 5.19
76 77 4.511246 ATGACATGCGGGGGCCTG 62.511 66.667 0.84 0.00 0.00 4.85
148 174 7.518188 AGAGGTTTACAGGAAATGAGAAAAGA 58.482 34.615 0.00 0.00 0.00 2.52
149 175 7.998964 AGAGGTTTACAGGAAATGAGAAAAGAA 59.001 33.333 0.00 0.00 0.00 2.52
154 180 5.836347 ACAGGAAATGAGAAAAGAAGTTGC 58.164 37.500 0.00 0.00 0.00 4.17
158 184 4.861102 AATGAGAAAAGAAGTTGCCTGG 57.139 40.909 0.00 0.00 0.00 4.45
185 211 7.281991 ACTTCACGTAAATTATACGGTCAAC 57.718 36.000 18.04 0.00 44.38 3.18
188 214 4.869297 CACGTAAATTATACGGTCAACCCA 59.131 41.667 18.04 0.00 44.38 4.51
201 227 7.329588 ACGGTCAACCCATAATATCTTTTTC 57.670 36.000 0.00 0.00 0.00 2.29
202 228 6.887545 ACGGTCAACCCATAATATCTTTTTCA 59.112 34.615 0.00 0.00 0.00 2.69
203 229 7.559897 ACGGTCAACCCATAATATCTTTTTCAT 59.440 33.333 0.00 0.00 0.00 2.57
312 339 7.038729 TGCAAGATTGTTATTCCACCCAAATTA 60.039 33.333 0.00 0.00 0.00 1.40
326 353 6.039159 CCACCCAAATTACTGCAATTTTTGTT 59.961 34.615 0.00 0.00 42.93 2.83
340 367 6.515365 GCAATTTTTGTTCATTCCAGCCAAAT 60.515 34.615 0.00 0.00 0.00 2.32
341 368 7.427214 CAATTTTTGTTCATTCCAGCCAAATT 58.573 30.769 0.00 0.00 0.00 1.82
342 369 7.585579 ATTTTTGTTCATTCCAGCCAAATTT 57.414 28.000 0.00 0.00 0.00 1.82
343 370 7.401955 TTTTTGTTCATTCCAGCCAAATTTT 57.598 28.000 0.00 0.00 0.00 1.82
344 371 6.374565 TTTGTTCATTCCAGCCAAATTTTG 57.625 33.333 1.99 1.99 0.00 2.44
345 372 3.814283 TGTTCATTCCAGCCAAATTTTGC 59.186 39.130 6.14 6.14 0.00 3.68
346 373 3.766068 TCATTCCAGCCAAATTTTGCA 57.234 38.095 15.83 0.00 0.00 4.08
347 374 4.289238 TCATTCCAGCCAAATTTTGCAT 57.711 36.364 15.83 0.00 0.00 3.96
348 375 5.417754 TCATTCCAGCCAAATTTTGCATA 57.582 34.783 15.83 0.00 0.00 3.14
349 376 5.421277 TCATTCCAGCCAAATTTTGCATAG 58.579 37.500 15.83 5.87 0.00 2.23
350 377 3.891422 TCCAGCCAAATTTTGCATAGG 57.109 42.857 15.83 13.48 0.00 2.57
351 378 2.500910 TCCAGCCAAATTTTGCATAGGG 59.499 45.455 15.83 11.10 0.00 3.53
352 379 2.236893 CCAGCCAAATTTTGCATAGGGT 59.763 45.455 15.83 3.21 0.00 4.34
353 380 3.524541 CAGCCAAATTTTGCATAGGGTC 58.475 45.455 15.83 0.00 0.00 4.46
354 381 3.196254 CAGCCAAATTTTGCATAGGGTCT 59.804 43.478 15.83 0.00 0.00 3.85
355 382 3.448660 AGCCAAATTTTGCATAGGGTCTC 59.551 43.478 15.83 0.00 0.00 3.36
356 383 3.195396 GCCAAATTTTGCATAGGGTCTCA 59.805 43.478 9.26 0.00 0.00 3.27
357 384 4.747810 CCAAATTTTGCATAGGGTCTCAC 58.252 43.478 3.50 0.00 0.00 3.51
358 385 4.381932 CCAAATTTTGCATAGGGTCTCACC 60.382 45.833 3.50 0.00 37.60 4.02
369 396 2.812358 GGTCTCACCCGCAAAATTTT 57.188 45.000 0.00 0.00 30.04 1.82
370 397 3.106242 GGTCTCACCCGCAAAATTTTT 57.894 42.857 0.00 0.00 30.04 1.94
406 433 2.758327 AGAGTCATACGGCCGGCA 60.758 61.111 31.76 17.80 0.00 5.69
493 529 3.669686 ACGAGAGTACAGCGCACT 58.330 55.556 11.47 3.83 46.88 4.40
506 542 1.069765 CGCACTATGCCGGGAAGAT 59.930 57.895 0.00 0.00 41.12 2.40
539 578 3.934391 CTCCCGACGCAACTGGGAC 62.934 68.421 0.18 0.00 46.96 4.46
549 588 5.622770 ACGCAACTGGGACTTAATAAAAG 57.377 39.130 0.18 0.00 0.00 2.27
618 657 2.286523 CGTCACTCCCTCCCAAGCT 61.287 63.158 0.00 0.00 0.00 3.74
639 678 3.821033 CTCCCCGACTTCTTTTTGTCAAT 59.179 43.478 0.00 0.00 33.18 2.57
640 679 4.211920 TCCCCGACTTCTTTTTGTCAATT 58.788 39.130 0.00 0.00 33.18 2.32
641 680 4.647399 TCCCCGACTTCTTTTTGTCAATTT 59.353 37.500 0.00 0.00 33.18 1.82
642 681 5.128008 TCCCCGACTTCTTTTTGTCAATTTT 59.872 36.000 0.00 0.00 33.18 1.82
643 682 5.234116 CCCCGACTTCTTTTTGTCAATTTTG 59.766 40.000 0.00 0.00 33.18 2.44
644 683 5.234116 CCCGACTTCTTTTTGTCAATTTTGG 59.766 40.000 0.00 0.00 33.18 3.28
645 684 5.234116 CCGACTTCTTTTTGTCAATTTTGGG 59.766 40.000 0.00 0.00 33.18 4.12
646 685 5.234116 CGACTTCTTTTTGTCAATTTTGGGG 59.766 40.000 0.00 0.00 33.18 4.96
647 686 4.881273 ACTTCTTTTTGTCAATTTTGGGGC 59.119 37.500 0.00 0.00 0.00 5.80
648 687 4.769345 TCTTTTTGTCAATTTTGGGGCT 57.231 36.364 0.00 0.00 0.00 5.19
649 688 4.450053 TCTTTTTGTCAATTTTGGGGCTG 58.550 39.130 0.00 0.00 0.00 4.85
650 689 3.922171 TTTTGTCAATTTTGGGGCTGT 57.078 38.095 0.00 0.00 0.00 4.40
651 690 3.922171 TTTGTCAATTTTGGGGCTGTT 57.078 38.095 0.00 0.00 0.00 3.16
652 691 3.922171 TTGTCAATTTTGGGGCTGTTT 57.078 38.095 0.00 0.00 0.00 2.83
653 692 3.191078 TGTCAATTTTGGGGCTGTTTG 57.809 42.857 0.00 0.00 0.00 2.93
654 693 2.158842 TGTCAATTTTGGGGCTGTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
655 694 2.122768 TCAATTTTGGGGCTGTTTGGT 58.877 42.857 0.00 0.00 0.00 3.67
656 695 2.507471 TCAATTTTGGGGCTGTTTGGTT 59.493 40.909 0.00 0.00 0.00 3.67
657 696 3.054065 TCAATTTTGGGGCTGTTTGGTTT 60.054 39.130 0.00 0.00 0.00 3.27
658 697 4.164221 TCAATTTTGGGGCTGTTTGGTTTA 59.836 37.500 0.00 0.00 0.00 2.01
659 698 3.828875 TTTTGGGGCTGTTTGGTTTAG 57.171 42.857 0.00 0.00 0.00 1.85
660 699 1.044611 TTGGGGCTGTTTGGTTTAGC 58.955 50.000 0.00 0.00 36.74 3.09
661 700 0.105964 TGGGGCTGTTTGGTTTAGCA 60.106 50.000 0.00 0.00 39.15 3.49
662 701 1.266178 GGGGCTGTTTGGTTTAGCAT 58.734 50.000 0.00 0.00 39.15 3.79
663 702 1.623311 GGGGCTGTTTGGTTTAGCATT 59.377 47.619 0.00 0.00 39.15 3.56
664 703 2.829120 GGGGCTGTTTGGTTTAGCATTA 59.171 45.455 0.00 0.00 39.15 1.90
665 704 3.119137 GGGGCTGTTTGGTTTAGCATTAG 60.119 47.826 0.00 0.00 39.15 1.73
666 705 3.511699 GGCTGTTTGGTTTAGCATTAGC 58.488 45.455 0.00 0.00 39.15 3.09
667 706 3.056891 GGCTGTTTGGTTTAGCATTAGCA 60.057 43.478 0.00 0.00 45.49 3.49
668 707 4.381932 GGCTGTTTGGTTTAGCATTAGCAT 60.382 41.667 0.00 0.00 45.49 3.79
669 708 5.170748 GCTGTTTGGTTTAGCATTAGCATT 58.829 37.500 0.00 0.00 45.49 3.56
670 709 5.062558 GCTGTTTGGTTTAGCATTAGCATTG 59.937 40.000 0.00 0.00 45.49 2.82
671 710 6.095432 TGTTTGGTTTAGCATTAGCATTGT 57.905 33.333 0.00 0.00 45.49 2.71
672 711 6.155827 TGTTTGGTTTAGCATTAGCATTGTC 58.844 36.000 0.00 0.00 45.49 3.18
673 712 5.973899 TTGGTTTAGCATTAGCATTGTCA 57.026 34.783 0.00 0.00 45.49 3.58
674 713 6.528537 TTGGTTTAGCATTAGCATTGTCAT 57.471 33.333 0.00 0.00 45.49 3.06
675 714 7.637631 TTGGTTTAGCATTAGCATTGTCATA 57.362 32.000 0.00 0.00 45.49 2.15
676 715 7.026631 TGGTTTAGCATTAGCATTGTCATAC 57.973 36.000 0.00 0.00 45.49 2.39
677 716 6.828273 TGGTTTAGCATTAGCATTGTCATACT 59.172 34.615 0.00 0.00 45.49 2.12
678 717 7.339212 TGGTTTAGCATTAGCATTGTCATACTT 59.661 33.333 0.00 0.00 45.49 2.24
679 718 8.190784 GGTTTAGCATTAGCATTGTCATACTTT 58.809 33.333 0.00 0.00 45.49 2.66
680 719 9.013490 GTTTAGCATTAGCATTGTCATACTTTG 57.987 33.333 0.00 0.00 45.49 2.77
681 720 5.585390 AGCATTAGCATTGTCATACTTTGC 58.415 37.500 0.00 0.00 45.49 3.68
682 721 4.741676 GCATTAGCATTGTCATACTTTGCC 59.258 41.667 0.00 0.00 41.58 4.52
683 722 5.679382 GCATTAGCATTGTCATACTTTGCCA 60.679 40.000 0.00 0.00 41.58 4.92
684 723 3.855689 AGCATTGTCATACTTTGCCAC 57.144 42.857 0.00 0.00 33.85 5.01
685 724 3.156293 AGCATTGTCATACTTTGCCACA 58.844 40.909 0.00 0.00 33.85 4.17
686 725 3.765511 AGCATTGTCATACTTTGCCACAT 59.234 39.130 0.00 0.00 33.85 3.21
687 726 4.949238 AGCATTGTCATACTTTGCCACATA 59.051 37.500 0.00 0.00 33.85 2.29
688 727 5.595542 AGCATTGTCATACTTTGCCACATAT 59.404 36.000 0.00 0.00 33.85 1.78
689 728 6.097270 AGCATTGTCATACTTTGCCACATATT 59.903 34.615 0.00 0.00 33.85 1.28
690 729 6.757947 GCATTGTCATACTTTGCCACATATTT 59.242 34.615 0.00 0.00 0.00 1.40
691 730 7.278424 GCATTGTCATACTTTGCCACATATTTT 59.722 33.333 0.00 0.00 0.00 1.82
692 731 9.153721 CATTGTCATACTTTGCCACATATTTTT 57.846 29.630 0.00 0.00 0.00 1.94
693 732 8.531622 TTGTCATACTTTGCCACATATTTTTG 57.468 30.769 0.00 0.00 0.00 2.44
694 733 7.665690 TGTCATACTTTGCCACATATTTTTGT 58.334 30.769 0.00 0.00 0.00 2.83
695 734 7.812191 TGTCATACTTTGCCACATATTTTTGTC 59.188 33.333 0.00 0.00 0.00 3.18
696 735 7.812191 GTCATACTTTGCCACATATTTTTGTCA 59.188 33.333 0.00 0.00 0.00 3.58
697 736 8.363390 TCATACTTTGCCACATATTTTTGTCAA 58.637 29.630 0.00 0.00 0.00 3.18
698 737 8.986847 CATACTTTGCCACATATTTTTGTCAAA 58.013 29.630 0.00 0.00 0.00 2.69
699 738 7.245419 ACTTTGCCACATATTTTTGTCAAAC 57.755 32.000 0.00 0.00 0.00 2.93
700 739 7.047271 ACTTTGCCACATATTTTTGTCAAACT 58.953 30.769 0.00 0.00 0.00 2.66
701 740 7.552330 ACTTTGCCACATATTTTTGTCAAACTT 59.448 29.630 0.00 0.00 0.00 2.66
702 741 6.841443 TGCCACATATTTTTGTCAAACTTG 57.159 33.333 0.00 0.00 0.00 3.16
703 742 5.236047 TGCCACATATTTTTGTCAAACTTGC 59.764 36.000 0.00 0.00 0.00 4.01
704 743 5.334028 GCCACATATTTTTGTCAAACTTGCC 60.334 40.000 0.00 0.00 0.00 4.52
705 744 5.990996 CCACATATTTTTGTCAAACTTGCCT 59.009 36.000 0.00 0.00 0.00 4.75
706 745 7.151308 CCACATATTTTTGTCAAACTTGCCTA 58.849 34.615 0.00 0.00 0.00 3.93
707 746 7.655328 CCACATATTTTTGTCAAACTTGCCTAA 59.345 33.333 0.00 0.00 0.00 2.69
708 747 8.702438 CACATATTTTTGTCAAACTTGCCTAAG 58.298 33.333 0.00 0.00 39.86 2.18
709 748 7.872483 ACATATTTTTGTCAAACTTGCCTAAGG 59.128 33.333 0.00 0.00 38.26 2.69
710 749 5.669164 TTTTTGTCAAACTTGCCTAAGGT 57.331 34.783 0.00 0.00 38.26 3.50
711 750 5.669164 TTTTGTCAAACTTGCCTAAGGTT 57.331 34.783 0.00 0.00 44.49 3.50
712 751 6.777213 TTTTGTCAAACTTGCCTAAGGTTA 57.223 33.333 0.00 0.00 41.80 2.85
713 752 6.385649 TTTGTCAAACTTGCCTAAGGTTAG 57.614 37.500 0.00 0.00 41.80 2.34
714 753 5.043737 TGTCAAACTTGCCTAAGGTTAGT 57.956 39.130 0.00 0.00 41.80 2.24
715 754 5.442391 TGTCAAACTTGCCTAAGGTTAGTT 58.558 37.500 0.00 0.00 41.80 2.24
716 755 5.889289 TGTCAAACTTGCCTAAGGTTAGTTT 59.111 36.000 1.99 1.99 41.80 2.66
717 756 7.055378 TGTCAAACTTGCCTAAGGTTAGTTTA 58.945 34.615 11.01 0.00 41.80 2.01
718 757 7.722285 TGTCAAACTTGCCTAAGGTTAGTTTAT 59.278 33.333 11.01 0.00 41.80 1.40
719 758 8.235226 GTCAAACTTGCCTAAGGTTAGTTTATC 58.765 37.037 11.01 6.00 41.80 1.75
720 759 7.940137 TCAAACTTGCCTAAGGTTAGTTTATCA 59.060 33.333 11.01 0.38 41.80 2.15
721 760 8.573035 CAAACTTGCCTAAGGTTAGTTTATCAA 58.427 33.333 11.01 0.00 41.80 2.57
722 761 8.700439 AACTTGCCTAAGGTTAGTTTATCAAA 57.300 30.769 0.00 0.00 38.26 2.69
723 762 8.700439 ACTTGCCTAAGGTTAGTTTATCAAAA 57.300 30.769 0.00 0.00 38.26 2.44
724 763 9.309224 ACTTGCCTAAGGTTAGTTTATCAAAAT 57.691 29.630 0.00 0.00 38.26 1.82
725 764 9.573133 CTTGCCTAAGGTTAGTTTATCAAAATG 57.427 33.333 0.00 0.00 0.00 2.32
726 765 8.871629 TGCCTAAGGTTAGTTTATCAAAATGA 57.128 30.769 0.00 0.00 0.00 2.57
727 766 8.956426 TGCCTAAGGTTAGTTTATCAAAATGAG 58.044 33.333 0.00 0.00 0.00 2.90
728 767 9.174166 GCCTAAGGTTAGTTTATCAAAATGAGA 57.826 33.333 0.00 0.00 0.00 3.27
731 770 7.631717 AGGTTAGTTTATCAAAATGAGAGCC 57.368 36.000 0.00 0.00 0.00 4.70
732 771 7.175104 AGGTTAGTTTATCAAAATGAGAGCCA 58.825 34.615 0.00 0.00 0.00 4.75
733 772 7.121315 AGGTTAGTTTATCAAAATGAGAGCCAC 59.879 37.037 0.00 0.00 0.00 5.01
734 773 7.094377 GGTTAGTTTATCAAAATGAGAGCCACA 60.094 37.037 0.00 0.00 0.00 4.17
735 774 6.899393 AGTTTATCAAAATGAGAGCCACAA 57.101 33.333 0.00 0.00 0.00 3.33
736 775 6.917533 AGTTTATCAAAATGAGAGCCACAAG 58.082 36.000 0.00 0.00 0.00 3.16
737 776 6.491403 AGTTTATCAAAATGAGAGCCACAAGT 59.509 34.615 0.00 0.00 0.00 3.16
738 777 6.899393 TTATCAAAATGAGAGCCACAAGTT 57.101 33.333 0.00 0.00 0.00 2.66
739 778 4.572985 TCAAAATGAGAGCCACAAGTTG 57.427 40.909 0.00 0.00 0.00 3.16
747 786 2.203538 CCACAAGTTGGCAGGCCT 60.204 61.111 12.19 0.00 39.07 5.19
748 787 1.074775 CCACAAGTTGGCAGGCCTA 59.925 57.895 3.98 0.26 39.07 3.93
749 788 0.539438 CCACAAGTTGGCAGGCCTAA 60.539 55.000 3.98 0.00 39.07 2.69
750 789 0.883833 CACAAGTTGGCAGGCCTAAG 59.116 55.000 3.98 0.00 36.94 2.18
751 790 0.251341 ACAAGTTGGCAGGCCTAAGG 60.251 55.000 3.98 0.00 36.94 2.69
752 791 0.038166 CAAGTTGGCAGGCCTAAGGA 59.962 55.000 3.98 0.00 36.94 3.36
753 792 0.777446 AAGTTGGCAGGCCTAAGGAA 59.223 50.000 3.98 0.00 36.94 3.36
754 793 0.777446 AGTTGGCAGGCCTAAGGAAA 59.223 50.000 3.98 0.00 36.94 3.13
755 794 1.359130 AGTTGGCAGGCCTAAGGAAAT 59.641 47.619 3.98 0.00 36.94 2.17
756 795 2.179427 GTTGGCAGGCCTAAGGAAATT 58.821 47.619 3.98 0.00 36.94 1.82
757 796 2.567169 GTTGGCAGGCCTAAGGAAATTT 59.433 45.455 3.98 0.00 36.94 1.82
758 797 2.901291 TGGCAGGCCTAAGGAAATTTT 58.099 42.857 3.98 0.00 36.94 1.82
759 798 2.566724 TGGCAGGCCTAAGGAAATTTTG 59.433 45.455 3.98 0.00 36.94 2.44
760 799 2.621338 GCAGGCCTAAGGAAATTTTGC 58.379 47.619 3.98 0.00 0.00 3.68
761 800 2.677902 GCAGGCCTAAGGAAATTTTGCC 60.678 50.000 3.98 0.00 36.88 4.52
762 801 2.566724 CAGGCCTAAGGAAATTTTGCCA 59.433 45.455 3.98 0.00 38.29 4.92
763 802 2.567169 AGGCCTAAGGAAATTTTGCCAC 59.433 45.455 1.29 0.00 38.29 5.01
764 803 2.301583 GGCCTAAGGAAATTTTGCCACA 59.698 45.455 0.00 0.00 36.71 4.17
765 804 3.055167 GGCCTAAGGAAATTTTGCCACAT 60.055 43.478 0.00 0.00 36.71 3.21
766 805 4.565444 GGCCTAAGGAAATTTTGCCACATT 60.565 41.667 0.00 0.00 36.71 2.71
767 806 5.003160 GCCTAAGGAAATTTTGCCACATTT 58.997 37.500 0.00 0.00 0.00 2.32
768 807 5.473162 GCCTAAGGAAATTTTGCCACATTTT 59.527 36.000 0.00 0.00 0.00 1.82
769 808 6.016360 GCCTAAGGAAATTTTGCCACATTTTT 60.016 34.615 0.00 0.00 0.00 1.94
791 830 6.671614 TTTTTATGTATGTCGTGTGGGATC 57.328 37.500 0.00 0.00 0.00 3.36
792 831 2.910688 ATGTATGTCGTGTGGGATCC 57.089 50.000 1.92 1.92 0.00 3.36
793 832 1.562783 TGTATGTCGTGTGGGATCCA 58.437 50.000 15.23 0.00 0.00 3.41
794 833 1.903183 TGTATGTCGTGTGGGATCCAA 59.097 47.619 15.23 0.00 34.18 3.53
795 834 2.303311 TGTATGTCGTGTGGGATCCAAA 59.697 45.455 15.23 0.00 34.18 3.28
796 835 2.806945 ATGTCGTGTGGGATCCAAAT 57.193 45.000 15.23 0.00 34.18 2.32
797 836 1.819928 TGTCGTGTGGGATCCAAATG 58.180 50.000 15.23 3.79 34.18 2.32
798 837 1.073125 TGTCGTGTGGGATCCAAATGT 59.927 47.619 15.23 0.00 34.18 2.71
799 838 1.468520 GTCGTGTGGGATCCAAATGTG 59.531 52.381 15.23 0.00 34.18 3.21
801 840 0.532115 GTGTGGGATCCAAATGTGGC 59.468 55.000 15.23 0.00 45.54 5.01
802 841 0.409092 TGTGGGATCCAAATGTGGCT 59.591 50.000 15.23 0.00 45.54 4.75
803 842 1.203162 TGTGGGATCCAAATGTGGCTT 60.203 47.619 15.23 0.00 45.54 4.35
804 843 1.205417 GTGGGATCCAAATGTGGCTTG 59.795 52.381 15.23 0.00 45.54 4.01
805 844 0.176449 GGGATCCAAATGTGGCTTGC 59.824 55.000 15.23 0.00 45.54 4.01
806 845 0.176449 GGATCCAAATGTGGCTTGCC 59.824 55.000 6.95 4.43 45.54 4.52
807 846 1.188863 GATCCAAATGTGGCTTGCCT 58.811 50.000 13.18 0.00 45.54 4.75
808 847 2.378038 GATCCAAATGTGGCTTGCCTA 58.622 47.619 13.18 2.62 45.54 3.93
809 848 2.300956 TCCAAATGTGGCTTGCCTAA 57.699 45.000 13.18 1.42 45.54 2.69
810 849 2.170166 TCCAAATGTGGCTTGCCTAAG 58.830 47.619 13.18 0.00 45.54 2.18
811 850 1.205417 CCAAATGTGGCTTGCCTAAGG 59.795 52.381 13.18 3.06 38.35 2.69
812 851 1.895131 CAAATGTGGCTTGCCTAAGGT 59.105 47.619 13.18 0.00 34.40 3.50
813 852 1.549203 AATGTGGCTTGCCTAAGGTG 58.451 50.000 13.18 0.00 34.40 4.00
814 853 0.405585 ATGTGGCTTGCCTAAGGTGT 59.594 50.000 13.18 0.00 34.40 4.16
815 854 0.537143 TGTGGCTTGCCTAAGGTGTG 60.537 55.000 13.18 0.00 34.40 3.82
816 855 1.074775 TGGCTTGCCTAAGGTGTGG 59.925 57.895 13.18 0.00 34.40 4.17
822 861 3.339547 GCCTAAGGTGTGGCTTGAA 57.660 52.632 0.00 0.00 45.26 2.69
823 862 0.881796 GCCTAAGGTGTGGCTTGAAC 59.118 55.000 0.00 0.00 45.26 3.18
824 863 1.534729 CCTAAGGTGTGGCTTGAACC 58.465 55.000 0.00 0.00 0.00 3.62
825 864 1.202879 CCTAAGGTGTGGCTTGAACCA 60.203 52.381 0.00 0.00 36.37 3.67
826 865 2.582052 CTAAGGTGTGGCTTGAACCAA 58.418 47.619 0.00 0.00 42.70 3.67
827 866 1.859302 AAGGTGTGGCTTGAACCAAA 58.141 45.000 0.00 0.00 42.70 3.28
828 867 1.111277 AGGTGTGGCTTGAACCAAAC 58.889 50.000 0.00 0.00 45.86 2.93
830 869 1.921243 GTGTGGCTTGAACCAAACAC 58.079 50.000 0.00 0.00 45.87 3.32
831 870 1.476488 GTGTGGCTTGAACCAAACACT 59.524 47.619 0.00 0.00 45.87 3.55
832 871 2.094234 GTGTGGCTTGAACCAAACACTT 60.094 45.455 0.00 0.00 45.87 3.16
833 872 3.129638 GTGTGGCTTGAACCAAACACTTA 59.870 43.478 0.00 0.00 45.87 2.24
834 873 3.129638 TGTGGCTTGAACCAAACACTTAC 59.870 43.478 12.25 0.00 42.70 2.34
835 874 3.380320 GTGGCTTGAACCAAACACTTACT 59.620 43.478 0.00 0.00 42.70 2.24
836 875 4.020543 TGGCTTGAACCAAACACTTACTT 58.979 39.130 0.00 0.00 36.55 2.24
837 876 5.066764 GTGGCTTGAACCAAACACTTACTTA 59.933 40.000 0.00 0.00 42.70 2.24
838 877 5.652891 TGGCTTGAACCAAACACTTACTTAA 59.347 36.000 0.00 0.00 36.55 1.85
839 878 6.183360 TGGCTTGAACCAAACACTTACTTAAG 60.183 38.462 0.00 0.00 36.55 1.85
840 879 6.183360 GGCTTGAACCAAACACTTACTTAAGT 60.183 38.462 13.68 13.68 46.76 2.24
841 880 7.255569 GCTTGAACCAAACACTTACTTAAGTT 58.744 34.615 14.49 0.00 43.57 2.66
842 881 7.220108 GCTTGAACCAAACACTTACTTAAGTTG 59.780 37.037 14.49 8.81 43.57 3.16
843 882 7.090953 TGAACCAAACACTTACTTAAGTTGG 57.909 36.000 14.49 15.14 43.57 3.77
845 884 6.688637 ACCAAACACTTACTTAAGTTGGTC 57.311 37.500 14.49 0.00 45.06 4.02
846 885 6.181908 ACCAAACACTTACTTAAGTTGGTCA 58.818 36.000 14.49 0.00 45.06 4.02
847 886 6.660094 ACCAAACACTTACTTAAGTTGGTCAA 59.340 34.615 14.49 0.30 45.06 3.18
848 887 7.177041 ACCAAACACTTACTTAAGTTGGTCAAA 59.823 33.333 14.49 0.00 45.06 2.69
849 888 7.700656 CCAAACACTTACTTAAGTTGGTCAAAG 59.299 37.037 14.49 12.13 43.57 2.77
850 889 7.933215 AACACTTACTTAAGTTGGTCAAAGT 57.067 32.000 14.49 12.77 43.57 2.66
851 890 7.933215 ACACTTACTTAAGTTGGTCAAAGTT 57.067 32.000 14.49 4.93 43.57 2.66
852 891 7.758495 ACACTTACTTAAGTTGGTCAAAGTTG 58.242 34.615 14.49 12.06 43.57 3.16
853 892 6.691388 CACTTACTTAAGTTGGTCAAAGTTGC 59.309 38.462 14.49 0.00 43.57 4.17
854 893 4.649088 ACTTAAGTTGGTCAAAGTTGCC 57.351 40.909 1.12 0.00 33.37 4.52
855 894 4.278310 ACTTAAGTTGGTCAAAGTTGCCT 58.722 39.130 1.12 0.00 33.37 4.75
856 895 5.442391 ACTTAAGTTGGTCAAAGTTGCCTA 58.558 37.500 1.12 0.00 33.37 3.93
857 896 5.889289 ACTTAAGTTGGTCAAAGTTGCCTAA 59.111 36.000 1.12 0.00 33.37 2.69
858 897 4.918810 AAGTTGGTCAAAGTTGCCTAAG 57.081 40.909 6.22 0.00 29.89 2.18
859 898 2.623416 AGTTGGTCAAAGTTGCCTAAGC 59.377 45.455 6.22 0.00 40.48 3.09
860 899 2.623416 GTTGGTCAAAGTTGCCTAAGCT 59.377 45.455 6.22 0.00 40.80 3.74
861 900 2.944129 TGGTCAAAGTTGCCTAAGCTT 58.056 42.857 3.48 3.48 40.80 3.74
862 901 4.093472 TGGTCAAAGTTGCCTAAGCTTA 57.907 40.909 5.94 5.94 40.80 3.09
863 902 4.072131 TGGTCAAAGTTGCCTAAGCTTAG 58.928 43.478 24.11 24.11 40.80 2.18
870 909 4.126524 CCTAAGCTTAGGCGTGGC 57.873 61.111 33.96 0.00 43.43 5.01
871 910 1.220749 CCTAAGCTTAGGCGTGGCA 59.779 57.895 33.96 0.00 43.43 4.92
872 911 0.392461 CCTAAGCTTAGGCGTGGCAA 60.392 55.000 33.96 0.00 43.43 4.52
873 912 1.668419 CTAAGCTTAGGCGTGGCAAT 58.332 50.000 23.48 0.00 44.37 3.56
874 913 1.599542 CTAAGCTTAGGCGTGGCAATC 59.400 52.381 23.48 0.00 44.37 2.67
875 914 0.035056 AAGCTTAGGCGTGGCAATCT 60.035 50.000 0.00 0.00 44.37 2.40
876 915 0.035056 AGCTTAGGCGTGGCAATCTT 60.035 50.000 0.00 0.00 44.37 2.40
877 916 0.811281 GCTTAGGCGTGGCAATCTTT 59.189 50.000 0.00 0.00 0.00 2.52
878 917 1.468054 GCTTAGGCGTGGCAATCTTTG 60.468 52.381 0.00 0.00 0.00 2.77
879 918 2.083774 CTTAGGCGTGGCAATCTTTGA 58.916 47.619 0.00 0.00 0.00 2.69
880 919 1.448985 TAGGCGTGGCAATCTTTGAC 58.551 50.000 0.00 0.00 39.85 3.18
891 930 6.072112 GGCAATCTTTGACAAAGTTAGTCA 57.928 37.500 23.78 7.39 43.72 3.41
892 931 5.915196 GGCAATCTTTGACAAAGTTAGTCAC 59.085 40.000 23.78 10.61 44.95 3.67
893 932 6.459573 GGCAATCTTTGACAAAGTTAGTCACA 60.460 38.462 23.78 6.08 44.95 3.58
894 933 6.972328 GCAATCTTTGACAAAGTTAGTCACAA 59.028 34.615 23.78 5.43 44.95 3.33
895 934 7.487829 GCAATCTTTGACAAAGTTAGTCACAAA 59.512 33.333 23.78 4.77 44.95 2.83
896 935 8.798153 CAATCTTTGACAAAGTTAGTCACAAAC 58.202 33.333 23.78 0.00 44.95 2.93
897 936 6.848451 TCTTTGACAAAGTTAGTCACAAACC 58.152 36.000 23.78 0.00 44.95 3.27
898 937 6.431543 TCTTTGACAAAGTTAGTCACAAACCA 59.568 34.615 23.78 0.78 44.95 3.67
899 938 6.576662 TTGACAAAGTTAGTCACAAACCAA 57.423 33.333 0.00 0.00 44.95 3.67
900 939 6.576662 TGACAAAGTTAGTCACAAACCAAA 57.423 33.333 0.00 0.00 40.80 3.28
901 940 6.383415 TGACAAAGTTAGTCACAAACCAAAC 58.617 36.000 0.00 0.00 40.80 2.93
902 941 6.016192 TGACAAAGTTAGTCACAAACCAAACA 60.016 34.615 0.00 0.00 40.80 2.83
903 942 6.386654 ACAAAGTTAGTCACAAACCAAACAG 58.613 36.000 0.00 0.00 30.35 3.16
904 943 4.632538 AGTTAGTCACAAACCAAACAGC 57.367 40.909 0.00 0.00 30.35 4.40
905 944 3.380320 AGTTAGTCACAAACCAAACAGCC 59.620 43.478 0.00 0.00 30.35 4.85
906 945 1.111277 AGTCACAAACCAAACAGCCC 58.889 50.000 0.00 0.00 0.00 5.19
907 946 0.104120 GTCACAAACCAAACAGCCCC 59.896 55.000 0.00 0.00 0.00 5.80
908 947 0.032615 TCACAAACCAAACAGCCCCT 60.033 50.000 0.00 0.00 0.00 4.79
1065 1105 3.461085 TCTCCATACGGTACCCTACTCTT 59.539 47.826 6.25 0.00 0.00 2.85
1205 1245 3.519930 GGAGGCTCCGAGGACGAC 61.520 72.222 19.53 0.00 42.66 4.34
1206 1246 2.750637 GAGGCTCCGAGGACGACA 60.751 66.667 2.15 0.00 42.66 4.35
1459 1499 4.545823 TCTTTTTGAAGCACAAGGTACG 57.454 40.909 0.00 0.00 39.77 3.67
1619 1662 3.415212 TGCTTGCTCTATGTTTCTGCTT 58.585 40.909 0.00 0.00 0.00 3.91
1631 1674 9.371136 TCTATGTTTCTGCTTGTAGACATAAAG 57.629 33.333 0.00 0.00 0.00 1.85
1700 1743 5.861251 CGGTTAAAATTTCTGCTGCAATGTA 59.139 36.000 3.02 0.00 0.00 2.29
1856 1907 4.577677 TTGTTCTGGCCCGCAGCA 62.578 61.111 0.00 0.00 46.50 4.41
1982 2033 4.988716 TCAGGACCTGTCGCCGGT 62.989 66.667 21.06 0.00 37.50 5.28
2382 2442 1.069204 TCTGCATAGGACGCCTTGATC 59.931 52.381 3.71 0.00 34.61 2.92
2383 2443 0.829990 TGCATAGGACGCCTTGATCA 59.170 50.000 3.71 0.00 34.61 2.92
2384 2444 1.417517 TGCATAGGACGCCTTGATCAT 59.582 47.619 0.00 0.00 34.61 2.45
2648 2824 2.971452 GGACCAGACAGTCCGGAC 59.029 66.667 27.67 27.67 46.57 4.79
2752 2929 2.039418 CCGGTGATTCCCAGACTATCA 58.961 52.381 0.00 0.00 0.00 2.15
2822 2999 0.038599 TGCCGGACTGTCTGGTAGTA 59.961 55.000 30.77 15.81 44.85 1.82
3055 3232 3.406764 GAGCTCTTGTCATTGGTCAACT 58.593 45.455 6.43 0.00 0.00 3.16
3061 3238 0.603065 GTCATTGGTCAACTTGGCCC 59.397 55.000 10.00 1.21 42.76 5.80
3269 3446 2.995480 CCAATGTTGGCCTGGGATT 58.005 52.632 3.32 0.00 42.21 3.01
3280 3457 1.002857 CCTGGGATTCCTGGGACTTT 58.997 55.000 8.15 0.00 45.34 2.66
3672 3849 0.178935 CACATTCACCCCCAACCCTT 60.179 55.000 0.00 0.00 0.00 3.95
3817 4038 2.338620 CGGTGACACTCGCCTTGA 59.661 61.111 5.39 0.00 44.63 3.02
3932 4153 2.256158 CCGTGTCGTGGCGTCTTA 59.744 61.111 0.00 0.00 0.00 2.10
4033 4254 2.609459 GGTGATGTAGCATTCAAGACGG 59.391 50.000 0.00 0.00 0.00 4.79
4048 4269 1.483424 GACGGCAGCAGCGATTCTAC 61.483 60.000 0.00 0.00 43.41 2.59
4076 4297 1.006571 ACCGTTGTAGTGTGAGGCG 60.007 57.895 0.00 0.00 0.00 5.52
4175 4396 0.404426 TCTCTCTTCTCGTGGTGGGA 59.596 55.000 0.00 0.00 0.00 4.37
4181 4402 1.191489 TTCTCGTGGTGGGAGATGCA 61.191 55.000 0.00 0.00 40.05 3.96
4232 4453 1.138069 CCAGGGTTTGTTTTGTGGTCC 59.862 52.381 0.00 0.00 0.00 4.46
4334 4555 9.106070 GTTGTAACCATATTCTTTCTATCCGTT 57.894 33.333 0.00 0.00 0.00 4.44
4437 4659 4.761739 GCCAATGGTGCATATAGTGTGTAT 59.238 41.667 0.00 0.00 0.00 2.29
4448 4670 9.976511 TGCATATAGTGTGTATTTACCTACTTC 57.023 33.333 0.00 0.00 0.00 3.01
4472 4694 7.624549 TCATGAACTGTAGAAAGGAATAAGCT 58.375 34.615 0.00 0.00 0.00 3.74
4474 4696 9.039870 CATGAACTGTAGAAAGGAATAAGCTAG 57.960 37.037 0.00 0.00 0.00 3.42
4590 4818 2.746472 GCCAGAGTGAGGACAAAGTTGT 60.746 50.000 0.00 0.00 45.65 3.32
4618 4846 6.824704 TCAAGGAGGGTGTTATTTATTTACCG 59.175 38.462 0.00 0.00 32.22 4.02
4687 4915 3.878778 ACTGACATGGCAGAATTACCTC 58.121 45.455 35.25 0.00 39.20 3.85
4688 4916 3.264193 ACTGACATGGCAGAATTACCTCA 59.736 43.478 35.25 4.80 39.20 3.86
4740 4968 4.141251 TGCTTTTCTAAGTTCAAGGGGTCT 60.141 41.667 0.00 0.00 33.74 3.85
4755 4983 5.180810 AGGGGTCTAATCTCTGGTTTTTC 57.819 43.478 0.00 0.00 0.00 2.29
4824 5052 5.130145 AGAGAATCATGGTTTCTAGGACTGG 59.870 44.000 10.58 0.00 37.82 4.00
4911 5139 3.857093 GCGTTGCTCTTTCTTTGAAAACA 59.143 39.130 0.00 0.00 0.00 2.83
5126 5354 1.726791 CTCGCTTACTTCAACGCATGT 59.273 47.619 0.00 0.00 0.00 3.21
5186 5414 9.393512 GTACTATTCCTACACTAAGAGAACTCA 57.606 37.037 4.64 0.00 0.00 3.41
5723 5951 4.334552 TGAAATGCAGCTGAAATCTACCA 58.665 39.130 20.43 3.02 0.00 3.25
5798 6026 0.813610 CTGTGCACAGGGTCGTTTCA 60.814 55.000 34.65 1.90 40.20 2.69
5952 6180 4.695928 GGCGAAAACTAGTCTTCCTGAAAT 59.304 41.667 3.35 0.00 0.00 2.17
5986 6214 5.178797 TCTACTCATGTTCCTGCTTTAAGC 58.821 41.667 10.38 10.38 42.82 3.09
6078 6306 0.604578 AATGCAAGTGTCACCATGGC 59.395 50.000 13.04 0.00 0.00 4.40
6087 6315 2.550606 GTGTCACCATGGCGAAAACTAA 59.449 45.455 13.04 0.00 0.00 2.24
6100 6328 5.048991 GGCGAAAACTAATCTTCCTGAAACA 60.049 40.000 0.00 0.00 0.00 2.83
6107 6335 3.777106 ATCTTCCTGAAACACAGCTGA 57.223 42.857 23.35 0.00 44.52 4.26
6127 6355 5.164620 TGAAATCTACTCATGTTCCTGCA 57.835 39.130 0.00 0.00 0.00 4.41
6158 6386 6.837992 TCTTATTGTAACGATGGAGCAAAAC 58.162 36.000 0.00 0.00 0.00 2.43
6185 6413 0.978667 TAGCAACCATCCGCAGGGTA 60.979 55.000 0.00 0.00 43.50 3.69
6195 6423 4.223032 CCATCCGCAGGGTAGTTTCTATAT 59.777 45.833 0.00 0.00 43.50 0.86
6343 6571 0.941542 TGGCGAAAACTTGTCTTCCG 59.058 50.000 0.00 0.00 0.00 4.30
6386 6614 5.531287 ACACATGTTCCTGGTTTAAGTTCTC 59.469 40.000 0.00 0.00 0.00 2.87
6560 6788 3.053693 AGCTGGCCATGGTCTAAACAATA 60.054 43.478 19.09 0.00 0.00 1.90
6743 6971 2.305927 AGACCTGGTACCAGTTCAATGG 59.694 50.000 33.40 23.00 46.47 3.16
6744 6972 2.304761 GACCTGGTACCAGTTCAATGGA 59.695 50.000 34.49 1.10 43.57 3.41
6910 7138 5.738909 CAGAGGACTGTCAATGTAGGAATT 58.261 41.667 10.38 0.00 39.11 2.17
7025 7253 6.875726 TCATGAAAGTAGAAAGTCTGTGGATG 59.124 38.462 0.00 0.00 0.00 3.51
7236 7464 2.233271 CCAACAACAGAAGCAGGTGAT 58.767 47.619 0.00 0.00 0.00 3.06
7276 7504 5.902613 TGCAAAGTCAGAATAAGATTGGG 57.097 39.130 0.00 0.00 0.00 4.12
7305 7533 2.292828 TCTCAAGCTGGGAAAAAGGG 57.707 50.000 0.00 0.00 0.00 3.95
7772 8003 0.824109 TCAGCCACCCGAGTTGATAG 59.176 55.000 0.00 0.00 0.00 2.08
8122 8353 4.442706 CGGCAAGTAAGTTCCATGACTAT 58.557 43.478 0.00 0.00 0.00 2.12
8456 8687 6.206634 TGACTTCAGTAACAAAAATAGCAGGG 59.793 38.462 0.00 0.00 0.00 4.45
8576 8855 9.927668 ATTCCACTAAATTTTCAGTTGGTAATG 57.072 29.630 0.00 0.00 0.00 1.90
8577 8856 7.891561 TCCACTAAATTTTCAGTTGGTAATGG 58.108 34.615 0.00 0.00 0.00 3.16
8578 8857 7.507616 TCCACTAAATTTTCAGTTGGTAATGGT 59.492 33.333 0.00 0.00 0.00 3.55
8579 8858 8.147704 CCACTAAATTTTCAGTTGGTAATGGTT 58.852 33.333 0.00 0.00 0.00 3.67
8580 8859 9.541143 CACTAAATTTTCAGTTGGTAATGGTTT 57.459 29.630 0.00 0.00 0.00 3.27
8581 8860 9.758651 ACTAAATTTTCAGTTGGTAATGGTTTC 57.241 29.630 0.00 0.00 0.00 2.78
8582 8861 9.981114 CTAAATTTTCAGTTGGTAATGGTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
8765 9045 7.951530 AATGTGCAAGAATGTTTTTCTTAGG 57.048 32.000 0.00 0.00 36.69 2.69
8768 9048 7.147312 TGTGCAAGAATGTTTTTCTTAGGATG 58.853 34.615 0.00 0.00 36.69 3.51
8769 9049 7.014134 TGTGCAAGAATGTTTTTCTTAGGATGA 59.986 33.333 0.00 0.00 36.69 2.92
8770 9050 7.327032 GTGCAAGAATGTTTTTCTTAGGATGAC 59.673 37.037 0.00 0.00 36.69 3.06
8779 9059 4.338795 TTCTTAGGATGACACTCCCTCT 57.661 45.455 0.00 0.00 35.79 3.69
8816 9096 7.936950 AAGACGTTTTAGGTCACTAGTTTAC 57.063 36.000 0.00 0.00 35.60 2.01
8817 9097 7.042797 AGACGTTTTAGGTCACTAGTTTACA 57.957 36.000 0.00 0.00 35.60 2.41
8818 9098 7.144000 AGACGTTTTAGGTCACTAGTTTACAG 58.856 38.462 0.00 0.00 35.60 2.74
8819 9099 7.013655 AGACGTTTTAGGTCACTAGTTTACAGA 59.986 37.037 0.00 0.00 35.60 3.41
8820 9100 7.144000 ACGTTTTAGGTCACTAGTTTACAGAG 58.856 38.462 0.00 0.00 0.00 3.35
8821 9101 7.013655 ACGTTTTAGGTCACTAGTTTACAGAGA 59.986 37.037 0.00 0.00 0.00 3.10
8822 9102 7.537991 CGTTTTAGGTCACTAGTTTACAGAGAG 59.462 40.741 0.00 0.00 0.00 3.20
8846 9153 5.798132 AGTACATACCATGGCATATCACAG 58.202 41.667 13.04 0.00 33.60 3.66
8886 9193 2.746904 TGCCAAATGTTGTCGATTCGAT 59.253 40.909 12.54 0.00 38.42 3.59
8911 9218 3.612247 CTGGGGCCTCCTGTTCGTG 62.612 68.421 0.00 0.00 36.20 4.35
8953 9260 4.630069 CCTTAACACATACTCCTTCCGTTG 59.370 45.833 0.00 0.00 0.00 4.10
8965 9272 3.886505 TCCTTCCGTTGCAAAATAAGTGT 59.113 39.130 0.00 0.00 0.00 3.55
8967 9274 4.444056 CCTTCCGTTGCAAAATAAGTGTTG 59.556 41.667 0.00 0.00 0.00 3.33
8973 9280 5.061560 CGTTGCAAAATAAGTGTTGTGTTGT 59.938 36.000 0.00 0.00 0.00 3.32
8985 9292 3.242349 TGTTGTGTTGTACTAAAACCGCG 60.242 43.478 0.00 0.00 0.00 6.46
8994 9301 4.858692 TGTACTAAAACCGCGACACTTATC 59.141 41.667 8.23 0.00 0.00 1.75
8995 9302 3.916761 ACTAAAACCGCGACACTTATCA 58.083 40.909 8.23 0.00 0.00 2.15
8996 9303 3.924686 ACTAAAACCGCGACACTTATCAG 59.075 43.478 8.23 0.00 0.00 2.90
8997 9304 1.076332 AAACCGCGACACTTATCAGC 58.924 50.000 8.23 0.00 0.00 4.26
8999 9306 0.175760 ACCGCGACACTTATCAGCAT 59.824 50.000 8.23 0.00 0.00 3.79
9001 9308 1.787155 CCGCGACACTTATCAGCATAC 59.213 52.381 8.23 0.00 0.00 2.39
9002 9309 2.543861 CCGCGACACTTATCAGCATACT 60.544 50.000 8.23 0.00 0.00 2.12
9003 9310 2.721603 CGCGACACTTATCAGCATACTC 59.278 50.000 0.00 0.00 0.00 2.59
9004 9311 3.549019 CGCGACACTTATCAGCATACTCT 60.549 47.826 0.00 0.00 0.00 3.24
9005 9312 4.363999 GCGACACTTATCAGCATACTCTT 58.636 43.478 0.00 0.00 0.00 2.85
9006 9313 4.442733 GCGACACTTATCAGCATACTCTTC 59.557 45.833 0.00 0.00 0.00 2.87
9007 9314 4.672862 CGACACTTATCAGCATACTCTTCG 59.327 45.833 0.00 0.00 0.00 3.79
9011 9353 5.812642 CACTTATCAGCATACTCTTCGGTTT 59.187 40.000 0.00 0.00 0.00 3.27
9087 9449 3.084786 GCAACAAGCTAGGGAAGACAAT 58.915 45.455 0.00 0.00 41.15 2.71
9120 9482 2.297315 GGAAAGCAGGGTTTCTTTCAGG 59.703 50.000 19.61 0.00 45.98 3.86
9155 9517 5.006165 CACTGACTCTGAACTGAACTGAAAC 59.994 44.000 0.00 0.00 0.00 2.78
9157 9519 3.809905 ACTCTGAACTGAACTGAAACCC 58.190 45.455 0.00 0.00 0.00 4.11
9361 9723 3.132111 AGTTTTAAACTGCCCCAACACAG 59.868 43.478 9.77 0.00 41.01 3.66
9417 9779 1.317431 CCGTCCCATACCGACAGACA 61.317 60.000 0.00 0.00 0.00 3.41
9439 9801 0.101399 CCGACCGAGGACATCAAGAG 59.899 60.000 0.00 0.00 0.00 2.85
9440 9802 0.101399 CGACCGAGGACATCAAGAGG 59.899 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.106519 GTATGGGGAGGCAGTGCAAT 60.107 55.000 18.61 4.34 0.00 3.56
9 10 1.302949 GTATGGGGAGGCAGTGCAA 59.697 57.895 18.61 0.00 0.00 4.08
59 60 4.511246 CAGGCCCCCGCATGTCAT 62.511 66.667 0.00 0.00 41.84 3.06
114 140 7.850935 TTTCCTGTAAACCTCTTCTCTCTAA 57.149 36.000 0.00 0.00 0.00 2.10
115 141 7.674348 TCATTTCCTGTAAACCTCTTCTCTCTA 59.326 37.037 0.00 0.00 0.00 2.43
116 142 6.498651 TCATTTCCTGTAAACCTCTTCTCTCT 59.501 38.462 0.00 0.00 0.00 3.10
117 143 6.702329 TCATTTCCTGTAAACCTCTTCTCTC 58.298 40.000 0.00 0.00 0.00 3.20
121 147 7.745620 TTTCTCATTTCCTGTAAACCTCTTC 57.254 36.000 0.00 0.00 0.00 2.87
154 180 3.915437 AATTTACGTGAAGTTGCCAGG 57.085 42.857 0.00 0.00 0.00 4.45
158 184 6.098367 ACCGTATAATTTACGTGAAGTTGC 57.902 37.500 0.00 0.00 39.09 4.17
166 192 5.083533 TGGGTTGACCGTATAATTTACGT 57.916 39.130 14.64 0.00 44.64 3.57
195 221 7.448469 TCCTCTAAAAGTCTTCCCATGAAAAAG 59.552 37.037 0.00 0.00 0.00 2.27
201 227 4.080638 AGCTCCTCTAAAAGTCTTCCCATG 60.081 45.833 0.00 0.00 0.00 3.66
202 228 4.107820 AGCTCCTCTAAAAGTCTTCCCAT 58.892 43.478 0.00 0.00 0.00 4.00
203 229 3.521727 AGCTCCTCTAAAAGTCTTCCCA 58.478 45.455 0.00 0.00 0.00 4.37
206 232 6.879400 TCCAATAGCTCCTCTAAAAGTCTTC 58.121 40.000 0.00 0.00 0.00 2.87
208 234 5.961421 ACTCCAATAGCTCCTCTAAAAGTCT 59.039 40.000 0.00 0.00 0.00 3.24
209 235 6.228616 ACTCCAATAGCTCCTCTAAAAGTC 57.771 41.667 0.00 0.00 0.00 3.01
210 236 6.410540 CAACTCCAATAGCTCCTCTAAAAGT 58.589 40.000 0.00 0.00 0.00 2.66
211 237 5.295540 GCAACTCCAATAGCTCCTCTAAAAG 59.704 44.000 0.00 0.00 0.00 2.27
281 308 5.357878 GGTGGAATAACAATCTTGCATCTCA 59.642 40.000 0.00 0.00 0.00 3.27
285 312 4.352009 TGGGTGGAATAACAATCTTGCAT 58.648 39.130 0.00 0.00 0.00 3.96
295 322 5.652994 TGCAGTAATTTGGGTGGAATAAC 57.347 39.130 0.00 0.00 0.00 1.89
326 353 3.766068 TGCAAAATTTGGCTGGAATGA 57.234 38.095 18.26 0.00 0.00 2.57
350 377 2.812358 AAAATTTTGCGGGTGAGACC 57.188 45.000 1.75 0.00 37.60 3.85
374 401 4.365514 TGACTCTGACCCTATGCAAAAA 57.634 40.909 0.00 0.00 0.00 1.94
383 410 1.043673 GGCCGTATGACTCTGACCCT 61.044 60.000 0.00 0.00 0.00 4.34
493 529 0.758734 CTGGTCATCTTCCCGGCATA 59.241 55.000 0.00 0.00 0.00 3.14
534 573 5.253330 CAGACTGCCTTTTATTAAGTCCCA 58.747 41.667 0.00 0.00 38.40 4.37
539 578 5.355350 CCTGACCAGACTGCCTTTTATTAAG 59.645 44.000 0.00 0.00 0.00 1.85
549 588 2.217038 TGGACCTGACCAGACTGCC 61.217 63.158 0.00 0.00 34.77 4.85
618 657 3.284793 TTGACAAAAAGAAGTCGGGGA 57.715 42.857 0.00 0.00 37.58 4.81
639 678 2.158885 GCTAAACCAAACAGCCCCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
640 679 1.414550 GCTAAACCAAACAGCCCCAAA 59.585 47.619 0.00 0.00 0.00 3.28
641 680 1.044611 GCTAAACCAAACAGCCCCAA 58.955 50.000 0.00 0.00 0.00 4.12
642 681 0.105964 TGCTAAACCAAACAGCCCCA 60.106 50.000 0.00 0.00 34.31 4.96
643 682 1.266178 ATGCTAAACCAAACAGCCCC 58.734 50.000 0.00 0.00 34.31 5.80
644 683 3.676049 GCTAATGCTAAACCAAACAGCCC 60.676 47.826 0.00 0.00 34.31 5.19
645 684 3.056891 TGCTAATGCTAAACCAAACAGCC 60.057 43.478 0.00 0.00 40.48 4.85
646 685 4.173036 TGCTAATGCTAAACCAAACAGC 57.827 40.909 0.00 0.00 40.48 4.40
647 686 6.158598 ACAATGCTAATGCTAAACCAAACAG 58.841 36.000 0.00 0.00 40.48 3.16
648 687 6.095432 ACAATGCTAATGCTAAACCAAACA 57.905 33.333 0.00 0.00 40.48 2.83
649 688 6.155827 TGACAATGCTAATGCTAAACCAAAC 58.844 36.000 0.00 0.00 40.48 2.93
650 689 6.338214 TGACAATGCTAATGCTAAACCAAA 57.662 33.333 0.00 0.00 40.48 3.28
651 690 5.973899 TGACAATGCTAATGCTAAACCAA 57.026 34.783 0.00 0.00 40.48 3.67
652 691 6.828273 AGTATGACAATGCTAATGCTAAACCA 59.172 34.615 0.00 0.00 40.48 3.67
653 692 7.264373 AGTATGACAATGCTAATGCTAAACC 57.736 36.000 0.00 0.00 40.48 3.27
654 693 9.013490 CAAAGTATGACAATGCTAATGCTAAAC 57.987 33.333 0.00 0.00 40.48 2.01
655 694 7.701924 GCAAAGTATGACAATGCTAATGCTAAA 59.298 33.333 7.03 0.00 37.92 1.85
656 695 7.195646 GCAAAGTATGACAATGCTAATGCTAA 58.804 34.615 7.03 0.00 37.92 3.09
657 696 6.238731 GGCAAAGTATGACAATGCTAATGCTA 60.239 38.462 11.42 0.00 39.40 3.49
658 697 5.450965 GGCAAAGTATGACAATGCTAATGCT 60.451 40.000 11.42 0.00 39.40 3.79
659 698 4.741676 GGCAAAGTATGACAATGCTAATGC 59.258 41.667 0.00 6.18 39.06 3.56
660 699 5.893687 TGGCAAAGTATGACAATGCTAATG 58.106 37.500 0.00 0.00 46.71 1.90
670 709 7.812191 TGACAAAAATATGTGGCAAAGTATGAC 59.188 33.333 0.00 0.00 37.68 3.06
671 710 7.890515 TGACAAAAATATGTGGCAAAGTATGA 58.109 30.769 0.00 0.00 32.57 2.15
672 711 8.531622 TTGACAAAAATATGTGGCAAAGTATG 57.468 30.769 0.00 0.00 39.81 2.39
678 717 6.238320 GCAAGTTTGACAAAAATATGTGGCAA 60.238 34.615 1.27 0.00 41.02 4.52
679 718 5.236047 GCAAGTTTGACAAAAATATGTGGCA 59.764 36.000 1.27 0.00 32.57 4.92
680 719 5.334028 GGCAAGTTTGACAAAAATATGTGGC 60.334 40.000 1.27 3.90 35.83 5.01
681 720 5.990996 AGGCAAGTTTGACAAAAATATGTGG 59.009 36.000 1.27 0.00 39.18 4.17
682 721 8.586570 TTAGGCAAGTTTGACAAAAATATGTG 57.413 30.769 1.27 0.00 39.18 3.21
683 722 7.872483 CCTTAGGCAAGTTTGACAAAAATATGT 59.128 33.333 1.27 0.00 39.18 2.29
684 723 7.872483 ACCTTAGGCAAGTTTGACAAAAATATG 59.128 33.333 1.27 1.30 39.18 1.78
685 724 7.962441 ACCTTAGGCAAGTTTGACAAAAATAT 58.038 30.769 1.27 0.00 39.18 1.28
686 725 7.354751 ACCTTAGGCAAGTTTGACAAAAATA 57.645 32.000 1.27 0.00 39.18 1.40
687 726 6.233905 ACCTTAGGCAAGTTTGACAAAAAT 57.766 33.333 1.27 0.00 39.18 1.82
688 727 5.669164 ACCTTAGGCAAGTTTGACAAAAA 57.331 34.783 1.27 0.00 39.18 1.94
689 728 5.669164 AACCTTAGGCAAGTTTGACAAAA 57.331 34.783 1.27 0.00 39.18 2.44
690 729 5.889289 ACTAACCTTAGGCAAGTTTGACAAA 59.111 36.000 0.00 0.00 39.18 2.83
691 730 5.442391 ACTAACCTTAGGCAAGTTTGACAA 58.558 37.500 0.00 0.00 39.18 3.18
692 731 5.043737 ACTAACCTTAGGCAAGTTTGACA 57.956 39.130 0.00 0.00 39.18 3.58
693 732 6.387041 AAACTAACCTTAGGCAAGTTTGAC 57.613 37.500 22.65 0.00 38.59 3.18
694 733 7.940137 TGATAAACTAACCTTAGGCAAGTTTGA 59.060 33.333 27.62 17.80 39.57 2.69
695 734 8.106247 TGATAAACTAACCTTAGGCAAGTTTG 57.894 34.615 27.62 9.46 39.57 2.93
696 735 8.700439 TTGATAAACTAACCTTAGGCAAGTTT 57.300 30.769 24.96 24.96 41.05 2.66
697 736 8.700439 TTTGATAAACTAACCTTAGGCAAGTT 57.300 30.769 11.61 11.61 34.03 2.66
698 737 8.700439 TTTTGATAAACTAACCTTAGGCAAGT 57.300 30.769 0.00 0.00 35.08 3.16
699 738 9.573133 CATTTTGATAAACTAACCTTAGGCAAG 57.427 33.333 0.00 0.00 35.08 4.01
700 739 9.303116 TCATTTTGATAAACTAACCTTAGGCAA 57.697 29.630 0.00 0.00 35.08 4.52
701 740 8.871629 TCATTTTGATAAACTAACCTTAGGCA 57.128 30.769 0.00 0.00 35.08 4.75
702 741 9.174166 TCTCATTTTGATAAACTAACCTTAGGC 57.826 33.333 0.00 0.00 35.08 3.93
705 744 9.174166 GGCTCTCATTTTGATAAACTAACCTTA 57.826 33.333 0.00 0.00 0.00 2.69
706 745 7.669722 TGGCTCTCATTTTGATAAACTAACCTT 59.330 33.333 0.00 0.00 0.00 3.50
707 746 7.121315 GTGGCTCTCATTTTGATAAACTAACCT 59.879 37.037 0.00 0.00 0.00 3.50
708 747 7.094377 TGTGGCTCTCATTTTGATAAACTAACC 60.094 37.037 0.00 0.00 0.00 2.85
709 748 7.816640 TGTGGCTCTCATTTTGATAAACTAAC 58.183 34.615 0.00 0.00 0.00 2.34
710 749 7.994425 TGTGGCTCTCATTTTGATAAACTAA 57.006 32.000 0.00 0.00 0.00 2.24
711 750 7.665559 ACTTGTGGCTCTCATTTTGATAAACTA 59.334 33.333 0.00 0.00 0.00 2.24
712 751 6.491403 ACTTGTGGCTCTCATTTTGATAAACT 59.509 34.615 0.00 0.00 0.00 2.66
713 752 6.681777 ACTTGTGGCTCTCATTTTGATAAAC 58.318 36.000 0.00 0.00 0.00 2.01
714 753 6.899393 ACTTGTGGCTCTCATTTTGATAAA 57.101 33.333 0.00 0.00 0.00 1.40
715 754 6.294675 CCAACTTGTGGCTCTCATTTTGATAA 60.295 38.462 0.00 0.00 41.72 1.75
716 755 5.183713 CCAACTTGTGGCTCTCATTTTGATA 59.816 40.000 0.00 0.00 41.72 2.15
717 756 4.021719 CCAACTTGTGGCTCTCATTTTGAT 60.022 41.667 0.00 0.00 41.72 2.57
718 757 3.318839 CCAACTTGTGGCTCTCATTTTGA 59.681 43.478 0.00 0.00 41.72 2.69
719 758 3.645884 CCAACTTGTGGCTCTCATTTTG 58.354 45.455 0.00 0.00 41.72 2.44
731 770 0.883833 CTTAGGCCTGCCAACTTGTG 59.116 55.000 17.99 0.00 38.92 3.33
732 771 0.251341 CCTTAGGCCTGCCAACTTGT 60.251 55.000 17.99 0.00 38.92 3.16
733 772 0.038166 TCCTTAGGCCTGCCAACTTG 59.962 55.000 17.99 0.00 38.92 3.16
734 773 0.777446 TTCCTTAGGCCTGCCAACTT 59.223 50.000 17.99 0.00 38.92 2.66
735 774 0.777446 TTTCCTTAGGCCTGCCAACT 59.223 50.000 17.99 0.00 38.92 3.16
736 775 1.852633 ATTTCCTTAGGCCTGCCAAC 58.147 50.000 17.99 0.00 38.92 3.77
737 776 2.621556 AATTTCCTTAGGCCTGCCAA 57.378 45.000 17.99 0.00 38.92 4.52
738 777 2.566724 CAAAATTTCCTTAGGCCTGCCA 59.433 45.455 17.99 0.00 38.92 4.92
739 778 2.677902 GCAAAATTTCCTTAGGCCTGCC 60.678 50.000 17.99 0.00 0.00 4.85
740 779 2.621338 GCAAAATTTCCTTAGGCCTGC 58.379 47.619 17.99 1.81 0.00 4.85
741 780 2.566724 TGGCAAAATTTCCTTAGGCCTG 59.433 45.455 17.99 0.00 37.19 4.85
742 781 2.567169 GTGGCAAAATTTCCTTAGGCCT 59.433 45.455 11.78 11.78 37.19 5.19
743 782 2.301583 TGTGGCAAAATTTCCTTAGGCC 59.698 45.455 0.00 0.00 36.94 5.19
744 783 3.676291 TGTGGCAAAATTTCCTTAGGC 57.324 42.857 0.00 0.00 0.00 3.93
745 784 7.509141 AAAAATGTGGCAAAATTTCCTTAGG 57.491 32.000 9.18 0.00 0.00 2.69
768 807 5.587043 GGATCCCACACGACATACATAAAAA 59.413 40.000 0.00 0.00 0.00 1.94
769 808 5.120399 GGATCCCACACGACATACATAAAA 58.880 41.667 0.00 0.00 0.00 1.52
770 809 4.162509 TGGATCCCACACGACATACATAAA 59.837 41.667 9.90 0.00 0.00 1.40
771 810 3.707102 TGGATCCCACACGACATACATAA 59.293 43.478 9.90 0.00 0.00 1.90
772 811 3.301274 TGGATCCCACACGACATACATA 58.699 45.455 9.90 0.00 0.00 2.29
773 812 2.115427 TGGATCCCACACGACATACAT 58.885 47.619 9.90 0.00 0.00 2.29
774 813 1.562783 TGGATCCCACACGACATACA 58.437 50.000 9.90 0.00 0.00 2.29
775 814 2.684001 TTGGATCCCACACGACATAC 57.316 50.000 9.90 0.00 30.78 2.39
776 815 3.054728 ACATTTGGATCCCACACGACATA 60.055 43.478 9.90 0.00 30.78 2.29
777 816 2.290896 ACATTTGGATCCCACACGACAT 60.291 45.455 9.90 0.00 30.78 3.06
778 817 1.073125 ACATTTGGATCCCACACGACA 59.927 47.619 9.90 0.00 30.78 4.35
779 818 1.468520 CACATTTGGATCCCACACGAC 59.531 52.381 9.90 0.00 30.78 4.34
780 819 1.819928 CACATTTGGATCCCACACGA 58.180 50.000 9.90 0.00 30.78 4.35
782 821 3.409577 AAGCCACATTTGGATCCCACAC 61.410 50.000 9.90 0.00 42.27 3.82
783 822 1.203162 AAGCCACATTTGGATCCCACA 60.203 47.619 9.90 0.00 42.27 4.17
784 823 1.205417 CAAGCCACATTTGGATCCCAC 59.795 52.381 9.90 0.00 42.27 4.61
785 824 1.559368 CAAGCCACATTTGGATCCCA 58.441 50.000 9.90 0.00 42.27 4.37
786 825 0.176449 GCAAGCCACATTTGGATCCC 59.824 55.000 9.90 0.00 42.27 3.85
787 826 0.176449 GGCAAGCCACATTTGGATCC 59.824 55.000 4.20 4.20 42.27 3.36
788 827 1.188863 AGGCAAGCCACATTTGGATC 58.811 50.000 14.40 0.00 42.27 3.36
789 828 2.530460 TAGGCAAGCCACATTTGGAT 57.470 45.000 14.40 0.00 46.39 3.41
792 831 1.895131 ACCTTAGGCAAGCCACATTTG 59.105 47.619 14.40 0.00 38.92 2.32
793 832 1.895131 CACCTTAGGCAAGCCACATTT 59.105 47.619 14.40 0.00 38.92 2.32
794 833 1.203050 ACACCTTAGGCAAGCCACATT 60.203 47.619 14.40 0.00 38.92 2.71
795 834 0.405585 ACACCTTAGGCAAGCCACAT 59.594 50.000 14.40 0.00 38.92 3.21
796 835 0.537143 CACACCTTAGGCAAGCCACA 60.537 55.000 14.40 0.00 38.92 4.17
797 836 1.244019 CCACACCTTAGGCAAGCCAC 61.244 60.000 14.40 0.00 38.92 5.01
798 837 1.074775 CCACACCTTAGGCAAGCCA 59.925 57.895 14.40 0.00 38.92 4.75
799 838 4.002797 CCACACCTTAGGCAAGCC 57.997 61.111 2.02 2.02 0.00 4.35
805 844 1.202879 TGGTTCAAGCCACACCTTAGG 60.203 52.381 0.00 0.00 32.81 2.69
806 845 2.270352 TGGTTCAAGCCACACCTTAG 57.730 50.000 0.00 0.00 32.81 2.18
807 846 2.691011 GTTTGGTTCAAGCCACACCTTA 59.309 45.455 0.00 0.00 38.42 2.69
808 847 1.480545 GTTTGGTTCAAGCCACACCTT 59.519 47.619 0.00 0.00 38.42 3.50
809 848 1.111277 GTTTGGTTCAAGCCACACCT 58.889 50.000 0.00 0.00 38.42 4.00
810 849 0.820871 TGTTTGGTTCAAGCCACACC 59.179 50.000 0.54 0.00 38.17 4.16
811 850 1.476488 AGTGTTTGGTTCAAGCCACAC 59.524 47.619 10.00 10.00 39.10 3.82
812 851 1.846007 AGTGTTTGGTTCAAGCCACA 58.154 45.000 11.95 0.00 38.42 4.17
813 852 2.959507 AAGTGTTTGGTTCAAGCCAC 57.040 45.000 0.00 0.00 38.42 5.01
814 853 3.626930 AGTAAGTGTTTGGTTCAAGCCA 58.373 40.909 0.00 0.00 36.62 4.75
815 854 4.649088 AAGTAAGTGTTTGGTTCAAGCC 57.351 40.909 0.00 0.00 0.00 4.35
816 855 6.792326 ACTTAAGTAAGTGTTTGGTTCAAGC 58.208 36.000 6.26 0.00 44.30 4.01
817 856 7.700656 CCAACTTAAGTAAGTGTTTGGTTCAAG 59.299 37.037 8.92 0.00 45.17 3.02
818 857 7.177041 ACCAACTTAAGTAAGTGTTTGGTTCAA 59.823 33.333 16.63 0.00 45.55 2.69
819 858 6.660094 ACCAACTTAAGTAAGTGTTTGGTTCA 59.340 34.615 16.63 0.00 45.55 3.18
820 859 7.092137 ACCAACTTAAGTAAGTGTTTGGTTC 57.908 36.000 16.63 0.00 45.55 3.62
821 860 6.660094 TGACCAACTTAAGTAAGTGTTTGGTT 59.340 34.615 21.15 9.78 46.71 3.67
823 862 6.687081 TGACCAACTTAAGTAAGTGTTTGG 57.313 37.500 8.92 13.02 45.17 3.28
824 863 8.241367 ACTTTGACCAACTTAAGTAAGTGTTTG 58.759 33.333 15.20 6.38 45.17 2.93
825 864 8.344446 ACTTTGACCAACTTAAGTAAGTGTTT 57.656 30.769 15.20 0.00 45.17 2.83
826 865 7.933215 ACTTTGACCAACTTAAGTAAGTGTT 57.067 32.000 15.20 0.00 45.17 3.32
827 866 7.627726 GCAACTTTGACCAACTTAAGTAAGTGT 60.628 37.037 16.21 8.76 45.17 3.55
828 867 6.691388 GCAACTTTGACCAACTTAAGTAAGTG 59.309 38.462 16.21 8.82 45.17 3.16
830 869 6.206498 GGCAACTTTGACCAACTTAAGTAAG 58.794 40.000 8.92 9.97 39.18 2.34
831 870 6.139048 GGCAACTTTGACCAACTTAAGTAA 57.861 37.500 8.92 0.00 31.06 2.24
832 871 5.761165 GGCAACTTTGACCAACTTAAGTA 57.239 39.130 8.92 0.00 31.06 2.24
833 872 4.649088 GGCAACTTTGACCAACTTAAGT 57.351 40.909 1.12 1.12 32.52 2.24
854 893 1.599542 GATTGCCACGCCTAAGCTTAG 59.400 52.381 24.11 24.11 36.60 2.18
855 894 1.209504 AGATTGCCACGCCTAAGCTTA 59.790 47.619 5.94 5.94 36.60 3.09
856 895 0.035056 AGATTGCCACGCCTAAGCTT 60.035 50.000 3.48 3.48 36.60 3.74
857 896 0.035056 AAGATTGCCACGCCTAAGCT 60.035 50.000 0.00 0.00 36.60 3.74
858 897 0.811281 AAAGATTGCCACGCCTAAGC 59.189 50.000 0.00 0.00 0.00 3.09
859 898 2.083774 TCAAAGATTGCCACGCCTAAG 58.916 47.619 0.00 0.00 0.00 2.18
860 899 1.810151 GTCAAAGATTGCCACGCCTAA 59.190 47.619 0.00 0.00 0.00 2.69
861 900 1.271108 TGTCAAAGATTGCCACGCCTA 60.271 47.619 0.00 0.00 0.00 3.93
862 901 0.537143 TGTCAAAGATTGCCACGCCT 60.537 50.000 0.00 0.00 0.00 5.52
863 902 0.313672 TTGTCAAAGATTGCCACGCC 59.686 50.000 0.00 0.00 0.00 5.68
864 903 2.053627 CTTTGTCAAAGATTGCCACGC 58.946 47.619 18.82 0.00 41.02 5.34
865 904 3.354089 ACTTTGTCAAAGATTGCCACG 57.646 42.857 28.07 3.47 41.02 4.94
866 905 5.831997 ACTAACTTTGTCAAAGATTGCCAC 58.168 37.500 28.07 0.00 41.02 5.01
867 906 5.592282 TGACTAACTTTGTCAAAGATTGCCA 59.408 36.000 28.07 15.02 40.89 4.92
868 907 5.915196 GTGACTAACTTTGTCAAAGATTGCC 59.085 40.000 28.07 12.86 44.63 4.52
869 908 6.494842 TGTGACTAACTTTGTCAAAGATTGC 58.505 36.000 28.07 14.80 44.63 3.56
870 909 8.798153 GTTTGTGACTAACTTTGTCAAAGATTG 58.202 33.333 28.07 19.96 44.63 2.67
871 910 7.973944 GGTTTGTGACTAACTTTGTCAAAGATT 59.026 33.333 28.07 19.86 44.63 2.40
872 911 7.122055 TGGTTTGTGACTAACTTTGTCAAAGAT 59.878 33.333 28.07 20.10 44.63 2.40
873 912 6.431543 TGGTTTGTGACTAACTTTGTCAAAGA 59.568 34.615 28.07 9.07 44.63 2.52
874 913 6.616947 TGGTTTGTGACTAACTTTGTCAAAG 58.383 36.000 21.34 21.34 44.63 2.77
875 914 6.576662 TGGTTTGTGACTAACTTTGTCAAA 57.423 33.333 9.55 0.45 44.63 2.69
876 915 6.576662 TTGGTTTGTGACTAACTTTGTCAA 57.423 33.333 9.55 2.93 44.63 3.18
877 916 6.016192 TGTTTGGTTTGTGACTAACTTTGTCA 60.016 34.615 9.55 2.35 41.48 3.58
878 917 6.383415 TGTTTGGTTTGTGACTAACTTTGTC 58.617 36.000 9.55 0.00 35.21 3.18
879 918 6.334102 TGTTTGGTTTGTGACTAACTTTGT 57.666 33.333 9.55 0.00 0.00 2.83
880 919 5.288472 GCTGTTTGGTTTGTGACTAACTTTG 59.712 40.000 9.55 0.00 0.00 2.77
881 920 5.407502 GCTGTTTGGTTTGTGACTAACTTT 58.592 37.500 9.55 0.00 0.00 2.66
882 921 4.142249 GGCTGTTTGGTTTGTGACTAACTT 60.142 41.667 9.55 0.00 0.00 2.66
883 922 3.380320 GGCTGTTTGGTTTGTGACTAACT 59.620 43.478 9.55 0.00 0.00 2.24
884 923 3.490249 GGGCTGTTTGGTTTGTGACTAAC 60.490 47.826 1.25 1.25 0.00 2.34
885 924 2.691011 GGGCTGTTTGGTTTGTGACTAA 59.309 45.455 0.00 0.00 0.00 2.24
886 925 2.303175 GGGCTGTTTGGTTTGTGACTA 58.697 47.619 0.00 0.00 0.00 2.59
887 926 1.111277 GGGCTGTTTGGTTTGTGACT 58.889 50.000 0.00 0.00 0.00 3.41
888 927 0.104120 GGGGCTGTTTGGTTTGTGAC 59.896 55.000 0.00 0.00 0.00 3.67
889 928 0.032615 AGGGGCTGTTTGGTTTGTGA 60.033 50.000 0.00 0.00 0.00 3.58
890 929 0.829990 AAGGGGCTGTTTGGTTTGTG 59.170 50.000 0.00 0.00 0.00 3.33
891 930 1.209261 CAAAGGGGCTGTTTGGTTTGT 59.791 47.619 4.73 0.00 32.26 2.83
892 931 1.209261 ACAAAGGGGCTGTTTGGTTTG 59.791 47.619 13.97 0.00 38.90 2.93
893 932 1.578897 ACAAAGGGGCTGTTTGGTTT 58.421 45.000 13.97 0.00 38.90 3.27
894 933 1.484653 GAACAAAGGGGCTGTTTGGTT 59.515 47.619 13.97 3.70 34.92 3.67
895 934 1.119684 GAACAAAGGGGCTGTTTGGT 58.880 50.000 13.97 9.04 37.53 3.67
896 935 0.392706 GGAACAAAGGGGCTGTTTGG 59.607 55.000 13.97 0.00 38.90 3.28
897 936 0.031994 CGGAACAAAGGGGCTGTTTG 59.968 55.000 9.59 9.59 37.14 2.93
898 937 1.744320 GCGGAACAAAGGGGCTGTTT 61.744 55.000 0.00 0.00 37.14 2.83
899 938 2.200337 GCGGAACAAAGGGGCTGTT 61.200 57.895 0.00 0.00 39.69 3.16
900 939 2.597510 GCGGAACAAAGGGGCTGT 60.598 61.111 0.00 0.00 0.00 4.40
901 940 3.373565 GGCGGAACAAAGGGGCTG 61.374 66.667 0.00 0.00 0.00 4.85
904 943 3.053896 GACGGCGGAACAAAGGGG 61.054 66.667 13.24 0.00 0.00 4.79
905 944 2.032071 AGACGGCGGAACAAAGGG 59.968 61.111 13.24 0.00 0.00 3.95
906 945 1.004918 AGAGACGGCGGAACAAAGG 60.005 57.895 13.24 0.00 0.00 3.11
907 946 1.014564 GGAGAGACGGCGGAACAAAG 61.015 60.000 13.24 0.00 0.00 2.77
908 947 1.005394 GGAGAGACGGCGGAACAAA 60.005 57.895 13.24 0.00 0.00 2.83
919 958 1.711060 CGAGCGAGACTGGGAGAGAC 61.711 65.000 0.00 0.00 0.00 3.36
953 992 4.280019 GAGGGTTGTTGGCCGGGT 62.280 66.667 2.18 0.00 0.00 5.28
1065 1105 0.465460 AAACAAGCGGAGGCAAGACA 60.465 50.000 0.00 0.00 43.41 3.41
1101 1141 0.376152 GAACAGGTCAGCATGCATCG 59.624 55.000 21.98 8.00 34.76 3.84
1619 1662 7.095229 GCATTGTGTTCACTCTTTATGTCTACA 60.095 37.037 4.59 0.00 0.00 2.74
1631 1674 1.225855 TGGACGCATTGTGTTCACTC 58.774 50.000 7.25 0.00 0.00 3.51
1700 1743 4.039124 CACCTTCAAATGGCTAAAACAGGT 59.961 41.667 0.00 0.00 32.09 4.00
1856 1907 0.974010 TGGACCTATCCTTCGCCGTT 60.974 55.000 0.00 0.00 46.43 4.44
1961 2012 1.296715 GGCGACAGGTCCTGATGTT 59.703 57.895 26.18 2.17 35.18 2.71
1982 2033 2.290832 TGCCTTCATTGCCATACAGACA 60.291 45.455 0.00 0.00 0.00 3.41
2093 2147 5.846714 CCTCTTAATCCTCCCTTATTCCTCA 59.153 44.000 0.00 0.00 0.00 3.86
2334 2394 1.156736 CAACCGGCTTACAAGACCTG 58.843 55.000 0.00 0.00 0.00 4.00
2648 2824 1.282248 CGTGCAACTACACCTCCACG 61.282 60.000 0.00 0.00 39.75 4.94
2752 2929 4.162690 GCCCGGACGAATCCAGCT 62.163 66.667 0.73 0.00 46.67 4.24
3055 3232 1.453745 GATTCATCGCCAGGGCCAA 60.454 57.895 6.18 0.00 37.98 4.52
3061 3238 0.949397 CACCATGGATTCATCGCCAG 59.051 55.000 21.47 0.00 37.64 4.85
3269 3446 0.112412 GGAAAGCCAAAGTCCCAGGA 59.888 55.000 0.00 0.00 0.00 3.86
3280 3457 1.228245 GCACCACTCTGGAAAGCCA 60.228 57.895 0.00 0.00 40.96 4.75
3293 3470 4.269523 GACCACCTGCAGGCACCA 62.270 66.667 33.06 0.00 39.32 4.17
3375 3552 0.252558 ACACCATCGACTACCCCCTT 60.253 55.000 0.00 0.00 0.00 3.95
3724 3901 0.462581 AATGTCATCTGCGCCACGAT 60.463 50.000 4.18 0.93 0.00 3.73
3817 4038 5.381757 CACCTAGATTCTACCAGCTAGAGT 58.618 45.833 0.00 0.00 32.75 3.24
3932 4153 2.036256 GTGTGGCCCCATGCTTCT 59.964 61.111 0.00 0.00 40.92 2.85
4033 4254 2.875786 GCCGTAGAATCGCTGCTGC 61.876 63.158 5.34 5.34 33.03 5.25
4133 4354 1.065126 CCAACTTAGCAGAGAAGGGGG 60.065 57.143 0.00 0.00 0.00 5.40
4146 4367 5.105716 CCACGAGAAGAGAGAATCCAACTTA 60.106 44.000 0.00 0.00 33.66 2.24
4181 4402 4.957954 ACCATCCATAAAAGTGCACATGAT 59.042 37.500 21.04 2.96 0.00 2.45
4232 4453 1.898902 TGGACCAACATTACAACCGG 58.101 50.000 0.00 0.00 0.00 5.28
4256 4477 0.814010 GCCACTCAACACAAGACCGT 60.814 55.000 0.00 0.00 0.00 4.83
4334 4555 1.259609 CAAAGCTTGCCCCTCAATGA 58.740 50.000 0.00 0.00 33.57 2.57
4437 4659 9.706691 CTTTCTACAGTTCATGAAGTAGGTAAA 57.293 33.333 24.03 18.86 35.75 2.01
4448 4670 7.856145 AGCTTATTCCTTTCTACAGTTCATG 57.144 36.000 0.00 0.00 0.00 3.07
4472 4694 1.361543 AGTAAGTGGTCTGGGAGGCTA 59.638 52.381 0.00 0.00 0.00 3.93
4474 4696 0.250513 CAGTAAGTGGTCTGGGAGGC 59.749 60.000 0.00 0.00 0.00 4.70
4590 4818 9.016438 GTAAATAAATAACACCCTCCTTGAACA 57.984 33.333 0.00 0.00 0.00 3.18
4687 4915 3.132925 CCACAGGGCAGTCAAAATTTTG 58.867 45.455 22.40 22.40 39.48 2.44
4688 4916 2.771372 ACCACAGGGCAGTCAAAATTTT 59.229 40.909 0.00 0.00 37.90 1.82
4740 4968 8.463930 ACACTTTGATGAAAAACCAGAGATTA 57.536 30.769 0.00 0.00 0.00 1.75
4911 5139 7.264221 TGCACTTTCAATGTTTCTTTGTACAT 58.736 30.769 0.00 0.00 36.58 2.29
5126 5354 6.460399 CGTTTTCTCAACAAACCCTTATGGAA 60.460 38.462 0.00 0.00 38.00 3.53
5186 5414 6.459298 CGCTCTTGCAATTTCTTCCTCATAAT 60.459 38.462 0.00 0.00 39.64 1.28
5639 5867 2.082231 CAGACCATCAAACTCAGCAGG 58.918 52.381 0.00 0.00 0.00 4.85
5723 5951 8.860088 ACAATAAGAACTTAAAGCAGGAACATT 58.140 29.630 0.00 0.00 0.00 2.71
5798 6026 3.505680 TGAAAGCAGTCTGTGTTTGTGTT 59.494 39.130 0.93 0.00 28.55 3.32
5952 6180 2.502947 ACATGAGTAGATTCCAGCTGCA 59.497 45.455 8.66 0.00 0.00 4.41
6002 6230 1.980765 TGCCTCAGTTCTGGTTCTCAT 59.019 47.619 0.00 0.00 0.00 2.90
6078 6306 6.954944 TGTGTTTCAGGAAGATTAGTTTTCG 58.045 36.000 0.00 0.00 0.00 3.46
6087 6315 3.777106 TCAGCTGTGTTTCAGGAAGAT 57.223 42.857 14.67 0.00 43.78 2.40
6100 6328 5.046014 AGGAACATGAGTAGATTTCAGCTGT 60.046 40.000 14.67 0.00 0.00 4.40
6107 6335 7.831193 ACTTAATGCAGGAACATGAGTAGATTT 59.169 33.333 0.00 0.00 30.08 2.17
6127 6355 8.827677 GCTCCATCGTTACAATAAGAACTTAAT 58.172 33.333 0.00 0.00 0.00 1.40
6158 6386 1.743772 CGGATGGTTGCTAGGACAAGG 60.744 57.143 0.00 0.00 0.00 3.61
6195 6423 5.906113 TTCCTGAAAGCAGTTTGTGTTTA 57.094 34.783 0.00 0.00 40.63 2.01
6343 6571 4.156556 TGTGTAGATTTCAGCTGCATTTCC 59.843 41.667 9.47 0.00 30.87 3.13
6386 6614 3.529634 TTTTGCTCCGTCGTTACAATG 57.470 42.857 0.00 0.00 0.00 2.82
6743 6971 3.434984 GCTTCAGTTCTGGTTCTCACATC 59.565 47.826 0.00 0.00 0.00 3.06
6744 6972 3.181451 TGCTTCAGTTCTGGTTCTCACAT 60.181 43.478 0.00 0.00 0.00 3.21
7025 7253 5.128992 TCCATTGATAATGATGTGCATGC 57.871 39.130 11.82 11.82 41.46 4.06
7086 7314 4.504858 CAAACTAATACTTGCCGGAGAGT 58.495 43.478 5.05 10.80 0.00 3.24
7305 7533 1.541588 GTCTCACAAAACCATCTGGGC 59.458 52.381 0.54 0.00 42.05 5.36
7701 7932 8.462016 AGTTGCCTATGACATATTCTTTGTTTC 58.538 33.333 0.00 0.00 0.00 2.78
7772 8003 3.214328 AGTATTGGTTCCGATGAATGCC 58.786 45.455 2.08 0.00 31.98 4.40
8456 8687 5.859521 TTTTTGATATTTGTGTGGCATGC 57.140 34.783 9.90 9.90 0.00 4.06
8509 8740 3.351740 TCTTGCTTCAACAACTGGAACA 58.648 40.909 0.00 0.00 0.00 3.18
8576 8855 8.041323 TCTTTCTGACATTCCACTATAGAAACC 58.959 37.037 6.78 0.00 31.64 3.27
8577 8856 9.436957 TTCTTTCTGACATTCCACTATAGAAAC 57.563 33.333 6.78 0.00 31.64 2.78
8579 8858 9.436957 GTTTCTTTCTGACATTCCACTATAGAA 57.563 33.333 6.78 0.00 0.00 2.10
8580 8859 8.593679 TGTTTCTTTCTGACATTCCACTATAGA 58.406 33.333 6.78 0.00 0.00 1.98
8581 8860 8.777865 TGTTTCTTTCTGACATTCCACTATAG 57.222 34.615 0.00 0.00 0.00 1.31
8582 8861 8.375506 ACTGTTTCTTTCTGACATTCCACTATA 58.624 33.333 0.00 0.00 0.00 1.31
8583 8862 7.173907 CACTGTTTCTTTCTGACATTCCACTAT 59.826 37.037 0.00 0.00 0.00 2.12
8584 8863 6.483307 CACTGTTTCTTTCTGACATTCCACTA 59.517 38.462 0.00 0.00 0.00 2.74
8682 8961 8.846943 TGCTAAACTAACATCTTGAGAAATGA 57.153 30.769 0.00 0.00 0.00 2.57
8754 9034 5.561679 AGGGAGTGTCATCCTAAGAAAAAC 58.438 41.667 0.00 0.00 39.50 2.43
8765 9045 4.810191 AGTTTACAGAGGGAGTGTCATC 57.190 45.455 0.00 0.00 0.00 2.92
8768 9048 9.152595 CTTATAAAAGTTTACAGAGGGAGTGTC 57.847 37.037 0.00 0.00 0.00 3.67
8769 9049 8.877195 TCTTATAAAAGTTTACAGAGGGAGTGT 58.123 33.333 0.00 0.00 34.13 3.55
8770 9050 9.152595 GTCTTATAAAAGTTTACAGAGGGAGTG 57.847 37.037 0.00 0.00 34.13 3.51
8811 9091 7.203910 CCATGGTATGTACTCTCTCTGTAAAC 58.796 42.308 2.57 0.00 0.00 2.01
8812 9092 6.183360 GCCATGGTATGTACTCTCTCTGTAAA 60.183 42.308 14.67 0.00 0.00 2.01
8813 9093 5.302059 GCCATGGTATGTACTCTCTCTGTAA 59.698 44.000 14.67 0.00 0.00 2.41
8814 9094 4.827835 GCCATGGTATGTACTCTCTCTGTA 59.172 45.833 14.67 0.00 0.00 2.74
8815 9095 3.639094 GCCATGGTATGTACTCTCTCTGT 59.361 47.826 14.67 0.00 0.00 3.41
8816 9096 3.638627 TGCCATGGTATGTACTCTCTCTG 59.361 47.826 14.67 0.00 0.00 3.35
8817 9097 3.916035 TGCCATGGTATGTACTCTCTCT 58.084 45.455 14.67 0.00 0.00 3.10
8818 9098 4.881019 ATGCCATGGTATGTACTCTCTC 57.119 45.455 15.28 0.00 0.00 3.20
8819 9099 6.019108 TGATATGCCATGGTATGTACTCTCT 58.981 40.000 24.13 0.00 0.00 3.10
8820 9100 6.102663 GTGATATGCCATGGTATGTACTCTC 58.897 44.000 24.13 12.21 0.00 3.20
8821 9101 5.543790 TGTGATATGCCATGGTATGTACTCT 59.456 40.000 24.13 0.16 0.00 3.24
8822 9102 5.793817 TGTGATATGCCATGGTATGTACTC 58.206 41.667 24.13 14.99 0.00 2.59
8846 9153 2.887337 CAATTTAAATGTCCCCGTGCC 58.113 47.619 0.39 0.00 0.00 5.01
8886 9193 2.000048 ACAGGAGGCCCCAGAAAATAA 59.000 47.619 12.24 0.00 37.41 1.40
8953 9260 8.844441 TTAGTACAACACAACACTTATTTTGC 57.156 30.769 0.00 0.00 0.00 3.68
8965 9272 3.001127 GTCGCGGTTTTAGTACAACACAA 59.999 43.478 6.13 0.00 0.00 3.33
8967 9274 2.539274 TGTCGCGGTTTTAGTACAACAC 59.461 45.455 6.13 0.00 0.00 3.32
8973 9280 5.058149 TGATAAGTGTCGCGGTTTTAGTA 57.942 39.130 6.13 0.00 0.00 1.82
8985 9292 4.979197 CCGAAGAGTATGCTGATAAGTGTC 59.021 45.833 0.00 0.00 0.00 3.67
8994 9301 2.673368 GACCAAACCGAAGAGTATGCTG 59.327 50.000 0.00 0.00 0.00 4.41
8995 9302 2.354805 GGACCAAACCGAAGAGTATGCT 60.355 50.000 0.00 0.00 0.00 3.79
8996 9303 2.007608 GGACCAAACCGAAGAGTATGC 58.992 52.381 0.00 0.00 0.00 3.14
8997 9304 3.056107 TCTGGACCAAACCGAAGAGTATG 60.056 47.826 0.00 0.00 0.00 2.39
8999 9306 2.600790 TCTGGACCAAACCGAAGAGTA 58.399 47.619 0.00 0.00 0.00 2.59
9001 9308 2.543777 TTCTGGACCAAACCGAAGAG 57.456 50.000 0.00 0.00 0.00 2.85
9002 9309 2.171870 ACTTTCTGGACCAAACCGAAGA 59.828 45.455 0.00 0.00 0.00 2.87
9003 9310 2.572290 ACTTTCTGGACCAAACCGAAG 58.428 47.619 0.00 0.00 0.00 3.79
9004 9311 2.721425 ACTTTCTGGACCAAACCGAA 57.279 45.000 0.00 0.00 0.00 4.30
9005 9312 3.842007 TTACTTTCTGGACCAAACCGA 57.158 42.857 0.00 0.00 0.00 4.69
9006 9313 3.304458 GCTTTACTTTCTGGACCAAACCG 60.304 47.826 0.00 0.00 0.00 4.44
9007 9314 3.005472 GGCTTTACTTTCTGGACCAAACC 59.995 47.826 0.00 0.00 0.00 3.27
9011 9353 3.073798 TGATGGCTTTACTTTCTGGACCA 59.926 43.478 0.00 0.00 0.00 4.02
9087 9449 2.334946 GCTTTCCATGCGCCTGTCA 61.335 57.895 11.83 0.00 0.00 3.58
9166 9528 2.717639 ACCTTAGGTGACATGCATCC 57.282 50.000 1.74 0.00 32.98 3.51
9220 9582 2.570581 CGATTGCACGTTTCGCCG 60.571 61.111 0.00 0.00 0.00 6.46
9361 9723 4.638865 GGACACACCTGATGGTTTTATACC 59.361 45.833 0.00 0.00 46.05 2.73
9417 9779 0.611062 TTGATGTCCTCGGTCGGTCT 60.611 55.000 0.00 0.00 0.00 3.85
9439 9801 0.035915 AGAAAGCTTTCTCCGAGGCC 60.036 55.000 31.56 8.13 43.72 5.19
9440 9802 3.542046 AGAAAGCTTTCTCCGAGGC 57.458 52.632 31.56 8.83 43.72 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.