Multiple sequence alignment - TraesCS3B01G316700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G316700 chr3B 100.000 5512 0 0 1 5512 508482815 508477304 0.000000e+00 10179.0
1 TraesCS3B01G316700 chr3D 92.269 3544 167 53 611 4120 391265023 391261553 0.000000e+00 4927.0
2 TraesCS3B01G316700 chr3D 94.063 1078 47 10 4122 5188 391257482 391256411 0.000000e+00 1620.0
3 TraesCS3B01G316700 chr3D 91.473 258 6 6 132 388 391265400 391265158 1.900000e-89 340.0
4 TraesCS3B01G316700 chr3D 96.296 162 3 3 405 564 391265174 391265014 4.230000e-66 263.0
5 TraesCS3B01G316700 chr3D 88.811 143 15 1 3676 3818 433547025 433547166 2.040000e-39 174.0
6 TraesCS3B01G316700 chr3D 79.630 108 17 5 441 547 391265382 391265279 7.660000e-09 73.1
7 TraesCS3B01G316700 chr3A 94.378 2668 100 26 1486 4120 511604813 511602163 0.000000e+00 4050.0
8 TraesCS3B01G316700 chr3A 92.091 569 34 7 4682 5240 511600850 511600283 0.000000e+00 791.0
9 TraesCS3B01G316700 chr3A 91.470 551 37 6 4124 4674 511601525 511600985 0.000000e+00 749.0
10 TraesCS3B01G316700 chr3A 90.810 457 34 8 991 1446 511605253 511604804 6.110000e-169 604.0
11 TraesCS3B01G316700 chr3A 79.137 997 77 55 4 939 511606673 511605747 8.010000e-158 568.0
12 TraesCS3B01G316700 chr3A 95.238 42 1 1 506 547 511606436 511606396 1.280000e-06 65.8
13 TraesCS3B01G316700 chr5D 84.577 201 22 5 3717 3913 457674658 457674853 2.030000e-44 191.0
14 TraesCS3B01G316700 chr5B 80.000 205 32 7 3711 3908 291792206 291792004 5.760000e-30 143.0
15 TraesCS3B01G316700 chr5B 87.500 80 10 0 3711 3790 291792369 291792290 5.880000e-15 93.5
16 TraesCS3B01G316700 chr5A 84.397 141 14 6 3727 3861 342236808 342236670 1.250000e-26 132.0
17 TraesCS3B01G316700 chr2D 83.333 126 18 3 5388 5512 216572835 216572712 4.510000e-21 113.0
18 TraesCS3B01G316700 chr7A 84.158 101 13 3 3761 3859 535906429 535906528 1.630000e-15 95.3
19 TraesCS3B01G316700 chr1A 90.000 50 5 0 5302 5351 452748046 452748095 1.280000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G316700 chr3B 508477304 508482815 5511 True 10179.000000 10179 100.000000 1 5512 1 chr3B.!!$R1 5511
1 TraesCS3B01G316700 chr3D 391256411 391257482 1071 True 1620.000000 1620 94.063000 4122 5188 1 chr3D.!!$R1 1066
2 TraesCS3B01G316700 chr3D 391261553 391265400 3847 True 1400.775000 4927 89.917000 132 4120 4 chr3D.!!$R2 3988
3 TraesCS3B01G316700 chr3A 511600283 511606673 6390 True 1137.966667 4050 90.520667 4 5240 6 chr3A.!!$R1 5236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 641 0.033699 ATCCTTTCAGGGAAGCAGGC 60.034 55.000 0.0 0.0 39.02 4.85 F
1427 1925 0.034896 GTGGTGAGTGGATCGGTGTT 59.965 55.000 0.0 0.0 0.00 3.32 F
1476 1974 0.179067 ACGGGCGAAGTGTTTCTGAA 60.179 50.000 0.0 0.0 0.00 3.02 F
2457 3020 0.181587 TCCACTGCCTGTTCGGAAAA 59.818 50.000 0.0 0.0 33.16 2.29 F
2536 3099 0.475828 ACCCTCCTTAGGCTGGTTGT 60.476 55.000 0.0 0.0 42.14 3.32 F
2869 3432 1.209504 TCCAGTGAAATAGGGAAGGCG 59.790 52.381 0.0 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 1978 0.035881 ACCACAGCACCTCAGACATG 59.964 55.000 0.00 0.0 0.00 3.21 R
2436 2999 0.181587 TTCCGAACAGGCAGTGGAAA 59.818 50.000 0.18 0.0 40.77 3.13 R
3073 3640 0.947244 CAACACTGACTGCACCTTCC 59.053 55.000 0.00 0.0 0.00 3.46 R
4263 5476 0.034059 CGGATGACACTATCCTGGCC 59.966 60.000 0.00 0.0 43.64 5.36 R
4264 5477 0.601311 GCGGATGACACTATCCTGGC 60.601 60.000 0.00 0.0 43.64 4.85 R
4614 5836 1.202582 AGCACGTCCATACAGACAGAC 59.797 52.381 0.00 0.0 36.52 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.123547 AGTGGAATTTGGTTGAGTTAAACTTCA 59.876 33.333 0.00 0.00 0.00 3.02
45 46 4.624452 AGTTAAACTTCACGAAGCCGATAC 59.376 41.667 6.71 0.40 41.99 2.24
51 52 5.357257 ACTTCACGAAGCCGATACAATTAT 58.643 37.500 6.71 0.00 41.99 1.28
100 104 7.810759 GTCCATACAAATTACACCGAAAAACAT 59.189 33.333 0.00 0.00 0.00 2.71
182 208 7.557719 CAGGAGGGATGTCATGTAGTTTTAATT 59.442 37.037 0.00 0.00 0.00 1.40
187 213 7.696453 GGGATGTCATGTAGTTTTAATTTCACG 59.304 37.037 0.00 0.00 0.00 4.35
240 267 2.798009 CCCTTGCGCAATAACCCG 59.202 61.111 25.26 10.67 0.00 5.28
309 336 6.648725 GCAAAAAGGCACCAGATTGTTAATTA 59.351 34.615 0.00 0.00 0.00 1.40
310 337 7.360017 GCAAAAAGGCACCAGATTGTTAATTAC 60.360 37.037 0.00 0.00 0.00 1.89
311 338 7.539034 AAAAGGCACCAGATTGTTAATTACT 57.461 32.000 0.00 0.00 0.00 2.24
312 339 8.644374 AAAAGGCACCAGATTGTTAATTACTA 57.356 30.769 0.00 0.00 0.00 1.82
379 410 6.979817 GCTTAATTGCATACAACCATCATCAA 59.020 34.615 0.00 0.00 38.99 2.57
380 411 7.492020 GCTTAATTGCATACAACCATCATCAAA 59.508 33.333 0.00 0.00 38.99 2.69
381 412 8.700722 TTAATTGCATACAACCATCATCAAAC 57.299 30.769 0.00 0.00 38.99 2.93
382 413 4.354071 TGCATACAACCATCATCAAACG 57.646 40.909 0.00 0.00 0.00 3.60
383 414 4.006319 TGCATACAACCATCATCAAACGA 58.994 39.130 0.00 0.00 0.00 3.85
384 415 4.457257 TGCATACAACCATCATCAAACGAA 59.543 37.500 0.00 0.00 0.00 3.85
385 416 5.030295 GCATACAACCATCATCAAACGAAG 58.970 41.667 0.00 0.00 0.00 3.79
386 417 5.572211 CATACAACCATCATCAAACGAAGG 58.428 41.667 0.00 0.00 0.00 3.46
387 418 2.819608 ACAACCATCATCAAACGAAGGG 59.180 45.455 0.00 0.00 0.00 3.95
388 419 2.819608 CAACCATCATCAAACGAAGGGT 59.180 45.455 0.00 0.00 0.00 4.34
389 420 3.154827 ACCATCATCAAACGAAGGGTT 57.845 42.857 0.00 0.00 41.76 4.11
390 421 2.819608 ACCATCATCAAACGAAGGGTTG 59.180 45.455 0.00 0.00 39.30 3.77
391 422 2.415893 CCATCATCAAACGAAGGGTTGC 60.416 50.000 0.00 0.00 39.30 4.17
392 423 1.243902 TCATCAAACGAAGGGTTGCC 58.756 50.000 0.00 0.00 39.30 4.52
393 424 1.202879 TCATCAAACGAAGGGTTGCCT 60.203 47.619 0.00 0.00 39.30 4.75
394 425 1.200020 CATCAAACGAAGGGTTGCCTC 59.800 52.381 0.00 0.00 39.30 4.70
395 426 0.181587 TCAAACGAAGGGTTGCCTCA 59.818 50.000 0.00 0.00 39.30 3.86
396 427 1.028905 CAAACGAAGGGTTGCCTCAA 58.971 50.000 0.00 0.00 39.30 3.02
397 428 1.407258 CAAACGAAGGGTTGCCTCAAA 59.593 47.619 0.00 0.00 39.30 2.69
398 429 1.770294 AACGAAGGGTTGCCTCAAAA 58.230 45.000 0.00 0.00 37.50 2.44
399 430 1.770294 ACGAAGGGTTGCCTCAAAAA 58.230 45.000 0.00 0.00 0.00 1.94
534 566 1.404047 CCCTTGCGCAATAACCCAAAG 60.404 52.381 25.26 8.22 0.00 2.77
541 573 2.735126 CGCAATAACCCAAAGCATCACC 60.735 50.000 0.00 0.00 0.00 4.02
566 598 3.190953 GCAGCAAGAAGAAGAAGAAGCAT 59.809 43.478 0.00 0.00 0.00 3.79
567 599 4.672283 GCAGCAAGAAGAAGAAGAAGCATC 60.672 45.833 0.00 0.00 0.00 3.91
568 600 4.454847 CAGCAAGAAGAAGAAGAAGCATCA 59.545 41.667 0.00 0.00 0.00 3.07
569 601 4.455190 AGCAAGAAGAAGAAGAAGCATCAC 59.545 41.667 0.00 0.00 0.00 3.06
570 602 4.455190 GCAAGAAGAAGAAGAAGCATCACT 59.545 41.667 0.00 0.00 0.00 3.41
571 603 5.048852 GCAAGAAGAAGAAGAAGCATCACTT 60.049 40.000 0.00 0.00 42.98 3.16
572 604 6.514705 GCAAGAAGAAGAAGAAGCATCACTTT 60.515 38.462 0.00 0.00 39.29 2.66
573 605 6.557291 AGAAGAAGAAGAAGCATCACTTTG 57.443 37.500 0.00 0.00 39.29 2.77
574 606 4.762956 AGAAGAAGAAGCATCACTTTGC 57.237 40.909 0.00 0.00 39.29 3.68
575 607 4.139786 AGAAGAAGAAGCATCACTTTGCA 58.860 39.130 0.00 0.00 45.23 4.08
576 608 4.215827 AGAAGAAGAAGCATCACTTTGCAG 59.784 41.667 0.00 0.00 45.23 4.41
577 609 2.228343 AGAAGAAGCATCACTTTGCAGC 59.772 45.455 0.00 0.00 45.23 5.25
578 610 1.612676 AGAAGCATCACTTTGCAGCA 58.387 45.000 0.00 0.00 45.23 4.41
579 611 1.958579 AGAAGCATCACTTTGCAGCAA 59.041 42.857 2.83 2.83 45.23 3.91
580 612 2.030185 AGAAGCATCACTTTGCAGCAAG 60.030 45.455 8.12 5.56 45.23 4.01
581 613 1.612676 AGCATCACTTTGCAGCAAGA 58.387 45.000 8.12 2.84 45.23 3.02
582 614 1.958579 AGCATCACTTTGCAGCAAGAA 59.041 42.857 8.12 0.00 45.23 2.52
583 615 2.030185 AGCATCACTTTGCAGCAAGAAG 60.030 45.455 8.12 6.61 45.23 2.85
584 616 2.030540 GCATCACTTTGCAGCAAGAAGA 60.031 45.455 12.90 10.09 42.31 2.87
585 617 3.551454 GCATCACTTTGCAGCAAGAAGAA 60.551 43.478 12.90 2.47 42.31 2.52
586 618 3.976793 TCACTTTGCAGCAAGAAGAAG 57.023 42.857 12.90 7.86 0.00 2.85
587 619 2.033801 TCACTTTGCAGCAAGAAGAAGC 59.966 45.455 12.90 0.00 0.00 3.86
588 620 2.026641 ACTTTGCAGCAAGAAGAAGCA 58.973 42.857 12.90 0.00 0.00 3.91
589 621 2.223665 ACTTTGCAGCAAGAAGAAGCAC 60.224 45.455 12.90 0.00 34.56 4.40
590 622 1.391577 TTGCAGCAAGAAGAAGCACA 58.608 45.000 2.83 0.00 34.56 4.57
598 630 3.254166 GCAAGAAGAAGCACATCCTTTCA 59.746 43.478 0.00 0.00 0.00 2.69
603 635 2.376518 AGAAGCACATCCTTTCAGGGAA 59.623 45.455 0.00 0.00 39.02 3.97
607 639 2.089980 CACATCCTTTCAGGGAAGCAG 58.910 52.381 0.00 0.00 39.02 4.24
609 641 0.033699 ATCCTTTCAGGGAAGCAGGC 60.034 55.000 0.00 0.00 39.02 4.85
614 646 0.478072 TTCAGGGAAGCAGGCAAGAA 59.522 50.000 0.00 0.00 0.00 2.52
615 647 0.037303 TCAGGGAAGCAGGCAAGAAG 59.963 55.000 0.00 0.00 0.00 2.85
626 658 3.549997 GCAAGAAGCAAGAAACGCA 57.450 47.368 0.00 0.00 44.79 5.24
630 662 1.668419 AGAAGCAAGAAACGCACACT 58.332 45.000 0.00 0.00 0.00 3.55
636 668 4.177026 AGCAAGAAACGCACACTAGATAG 58.823 43.478 0.00 0.00 0.00 2.08
637 669 3.307242 GCAAGAAACGCACACTAGATAGG 59.693 47.826 0.00 0.00 0.00 2.57
646 678 3.799420 GCACACTAGATAGGCGAAGAAAG 59.201 47.826 0.00 0.00 0.00 2.62
651 684 3.810310 AGATAGGCGAAGAAAGACCAG 57.190 47.619 0.00 0.00 0.00 4.00
653 686 0.973632 TAGGCGAAGAAAGACCAGCA 59.026 50.000 0.00 0.00 0.00 4.41
657 690 2.605580 GGCGAAGAAAGACCAGCAAAAG 60.606 50.000 0.00 0.00 0.00 2.27
659 692 2.878406 CGAAGAAAGACCAGCAAAAGGA 59.122 45.455 0.00 0.00 0.00 3.36
667 700 1.005924 ACCAGCAAAAGGAATCGGGAT 59.994 47.619 0.00 0.00 0.00 3.85
749 797 2.270205 CTGTGGAAGGAGGCGCAT 59.730 61.111 10.83 0.00 0.00 4.73
750 798 2.046023 TGTGGAAGGAGGCGCATG 60.046 61.111 10.83 0.00 0.00 4.06
751 799 2.045926 GTGGAAGGAGGCGCATGT 60.046 61.111 10.83 0.00 0.00 3.21
752 800 2.109126 GTGGAAGGAGGCGCATGTC 61.109 63.158 10.83 1.83 0.00 3.06
760 808 2.434336 AGGAGGCGCATGTCTTTATACA 59.566 45.455 10.83 0.00 0.00 2.29
761 809 2.802816 GGAGGCGCATGTCTTTATACAG 59.197 50.000 10.83 0.00 31.70 2.74
762 810 2.802816 GAGGCGCATGTCTTTATACAGG 59.197 50.000 10.83 0.00 34.37 4.00
763 811 2.434336 AGGCGCATGTCTTTATACAGGA 59.566 45.455 10.83 0.00 33.05 3.86
765 813 3.492656 GGCGCATGTCTTTATACAGGAGA 60.493 47.826 10.83 0.00 33.59 3.71
766 814 3.738282 GCGCATGTCTTTATACAGGAGAG 59.262 47.826 0.30 0.00 33.59 3.20
767 815 4.499865 GCGCATGTCTTTATACAGGAGAGA 60.500 45.833 0.30 0.00 33.59 3.10
768 816 4.979197 CGCATGTCTTTATACAGGAGAGAC 59.021 45.833 0.00 0.00 33.59 3.36
771 819 5.916661 TGTCTTTATACAGGAGAGACACC 57.083 43.478 0.74 0.00 41.09 4.16
773 821 4.710375 GTCTTTATACAGGAGAGACACCCA 59.290 45.833 0.00 0.00 37.33 4.51
774 822 5.187186 GTCTTTATACAGGAGAGACACCCAA 59.813 44.000 0.00 0.00 37.33 4.12
775 823 5.422331 TCTTTATACAGGAGAGACACCCAAG 59.578 44.000 0.00 0.00 0.00 3.61
776 824 1.267121 TACAGGAGAGACACCCAAGC 58.733 55.000 0.00 0.00 0.00 4.01
777 825 1.298014 CAGGAGAGACACCCAAGCC 59.702 63.158 0.00 0.00 0.00 4.35
778 826 1.159664 AGGAGAGACACCCAAGCCT 59.840 57.895 0.00 0.00 0.00 4.58
779 827 1.197430 AGGAGAGACACCCAAGCCTG 61.197 60.000 0.00 0.00 0.00 4.85
780 828 1.194781 GGAGAGACACCCAAGCCTGA 61.195 60.000 0.00 0.00 0.00 3.86
781 829 0.036858 GAGAGACACCCAAGCCTGAC 60.037 60.000 0.00 0.00 0.00 3.51
782 830 0.764369 AGAGACACCCAAGCCTGACA 60.764 55.000 0.00 0.00 0.00 3.58
783 831 0.603975 GAGACACCCAAGCCTGACAC 60.604 60.000 0.00 0.00 0.00 3.67
785 833 0.250901 GACACCCAAGCCTGACACAT 60.251 55.000 0.00 0.00 0.00 3.21
793 841 2.486472 AGCCTGACACATCTGGAAAG 57.514 50.000 4.55 0.00 44.77 2.62
799 847 0.251341 ACACATCTGGAAAGGCACCC 60.251 55.000 0.00 0.00 0.00 4.61
800 848 0.251297 CACATCTGGAAAGGCACCCA 60.251 55.000 0.00 0.00 0.00 4.51
802 850 0.967380 CATCTGGAAAGGCACCCACC 60.967 60.000 0.00 0.00 0.00 4.61
819 867 3.275999 CCACCTTAATCCGTAAACCCAG 58.724 50.000 0.00 0.00 0.00 4.45
820 868 3.054948 CCACCTTAATCCGTAAACCCAGA 60.055 47.826 0.00 0.00 0.00 3.86
821 869 4.566070 CCACCTTAATCCGTAAACCCAGAA 60.566 45.833 0.00 0.00 0.00 3.02
827 875 3.412237 TCCGTAAACCCAGAAAGAAGG 57.588 47.619 0.00 0.00 0.00 3.46
833 881 1.640917 ACCCAGAAAGAAGGCGTCTA 58.359 50.000 2.68 0.00 34.56 2.59
834 882 1.975680 ACCCAGAAAGAAGGCGTCTAA 59.024 47.619 2.68 0.00 34.56 2.10
835 883 2.572104 ACCCAGAAAGAAGGCGTCTAAT 59.428 45.455 2.68 0.00 34.56 1.73
837 885 4.409247 ACCCAGAAAGAAGGCGTCTAATAT 59.591 41.667 2.68 0.00 34.56 1.28
839 887 5.360591 CCAGAAAGAAGGCGTCTAATATGT 58.639 41.667 2.68 0.00 34.56 2.29
840 888 5.817816 CCAGAAAGAAGGCGTCTAATATGTT 59.182 40.000 2.68 0.00 34.56 2.71
841 889 6.238211 CCAGAAAGAAGGCGTCTAATATGTTG 60.238 42.308 2.68 0.00 34.56 3.33
845 893 5.279384 AGAAGGCGTCTAATATGTTGTACG 58.721 41.667 0.00 6.74 33.56 3.67
874 924 1.022451 GCAAAGGCGTATTCCGTGGA 61.022 55.000 0.00 0.00 39.32 4.02
877 927 3.199677 CAAAGGCGTATTCCGTGGAATA 58.800 45.455 15.67 15.67 43.66 1.75
887 937 3.395669 GTGGAATACGTCAGCGCC 58.604 61.111 2.29 0.00 42.83 6.53
888 938 1.153628 GTGGAATACGTCAGCGCCT 60.154 57.895 2.29 0.00 42.83 5.52
889 939 1.153647 TGGAATACGTCAGCGCCTG 60.154 57.895 2.29 1.50 42.83 4.85
890 940 1.883084 GGAATACGTCAGCGCCTGG 60.883 63.158 2.29 0.00 42.83 4.45
891 941 1.141019 GAATACGTCAGCGCCTGGA 59.859 57.895 2.29 0.00 42.83 3.86
892 942 0.872021 GAATACGTCAGCGCCTGGAG 60.872 60.000 2.29 0.00 42.83 3.86
893 943 1.320344 AATACGTCAGCGCCTGGAGA 61.320 55.000 2.29 0.00 42.83 3.71
896 946 2.493973 GTCAGCGCCTGGAGAGAG 59.506 66.667 2.29 0.00 31.51 3.20
897 947 2.757508 TCAGCGCCTGGAGAGAGG 60.758 66.667 2.29 0.00 36.03 3.69
898 948 2.757508 CAGCGCCTGGAGAGAGGA 60.758 66.667 2.29 0.00 34.69 3.71
899 949 2.038007 AGCGCCTGGAGAGAGGAA 59.962 61.111 2.29 0.00 34.69 3.36
900 950 1.610673 AGCGCCTGGAGAGAGGAAA 60.611 57.895 2.29 0.00 34.69 3.13
901 951 1.153469 GCGCCTGGAGAGAGGAAAG 60.153 63.158 0.09 0.00 34.69 2.62
904 954 0.618968 GCCTGGAGAGAGGAAAGGGA 60.619 60.000 0.00 0.00 34.69 4.20
905 955 1.958288 CCTGGAGAGAGGAAAGGGAA 58.042 55.000 0.00 0.00 34.69 3.97
913 963 2.764010 GAGAGGAAAGGGAAGAGGAGTC 59.236 54.545 0.00 0.00 0.00 3.36
914 964 2.385417 AGAGGAAAGGGAAGAGGAGTCT 59.615 50.000 0.00 0.00 32.81 3.24
915 965 2.764010 GAGGAAAGGGAAGAGGAGTCTC 59.236 54.545 0.00 0.00 40.25 3.36
927 983 1.444553 GAGTCTCCGCACGGTTGAG 60.445 63.158 9.23 0.00 36.47 3.02
940 997 0.603569 GGTTGAGAGAGTCGAAGGCA 59.396 55.000 0.00 0.00 0.00 4.75
949 1006 0.250513 AGTCGAAGGCATCCAAGACC 59.749 55.000 0.00 0.00 0.00 3.85
951 1008 0.690192 TCGAAGGCATCCAAGACCAA 59.310 50.000 0.00 0.00 0.00 3.67
952 1009 0.804989 CGAAGGCATCCAAGACCAAC 59.195 55.000 0.00 0.00 0.00 3.77
953 1010 1.177401 GAAGGCATCCAAGACCAACC 58.823 55.000 0.00 0.00 0.00 3.77
954 1011 0.251787 AAGGCATCCAAGACCAACCC 60.252 55.000 0.00 0.00 0.00 4.11
955 1012 1.142688 AGGCATCCAAGACCAACCCT 61.143 55.000 0.00 0.00 0.00 4.34
956 1013 0.967380 GGCATCCAAGACCAACCCTG 60.967 60.000 0.00 0.00 0.00 4.45
966 1023 4.659172 CAACCCTGGCCGGCTCAA 62.659 66.667 28.56 11.71 0.00 3.02
967 1024 3.897122 AACCCTGGCCGGCTCAAA 61.897 61.111 28.56 8.96 0.00 2.69
969 1026 2.600173 CCCTGGCCGGCTCAAAAA 60.600 61.111 28.56 4.37 0.00 1.94
1011 1509 4.474846 CGGAAAATGGCGTGCGGG 62.475 66.667 0.00 0.00 0.00 6.13
1053 1551 3.591835 CTCTCCTCTCCGCCTCGC 61.592 72.222 0.00 0.00 0.00 5.03
1101 1599 3.458163 CTCGCGCCCAGAACCCTA 61.458 66.667 0.00 0.00 0.00 3.53
1109 1607 0.342313 CCCAGAACCCTACCCCTAGT 59.658 60.000 0.00 0.00 0.00 2.57
1111 1609 1.007963 CCAGAACCCTACCCCTAGTCA 59.992 57.143 0.00 0.00 0.00 3.41
1117 1615 1.445716 CCTACCCCTAGTCACTCGCG 61.446 65.000 0.00 0.00 0.00 5.87
1118 1616 2.061182 CTACCCCTAGTCACTCGCGC 62.061 65.000 0.00 0.00 0.00 6.86
1119 1617 2.547640 TACCCCTAGTCACTCGCGCT 62.548 60.000 5.56 0.00 0.00 5.92
1120 1618 2.409651 CCCTAGTCACTCGCGCTC 59.590 66.667 5.56 0.00 0.00 5.03
1382 1880 1.538629 CATTTGGGGCCCAGGGTTT 60.539 57.895 27.05 7.17 33.81 3.27
1407 1905 2.793946 GTCGCCGCCTACTTCGTA 59.206 61.111 0.00 0.00 0.00 3.43
1424 1922 1.183549 GTAGTGGTGAGTGGATCGGT 58.816 55.000 0.00 0.00 0.00 4.69
1425 1923 1.135083 GTAGTGGTGAGTGGATCGGTG 60.135 57.143 0.00 0.00 0.00 4.94
1426 1924 0.832135 AGTGGTGAGTGGATCGGTGT 60.832 55.000 0.00 0.00 0.00 4.16
1427 1925 0.034896 GTGGTGAGTGGATCGGTGTT 59.965 55.000 0.00 0.00 0.00 3.32
1428 1926 1.274167 GTGGTGAGTGGATCGGTGTTA 59.726 52.381 0.00 0.00 0.00 2.41
1429 1927 1.274167 TGGTGAGTGGATCGGTGTTAC 59.726 52.381 0.00 0.00 0.00 2.50
1430 1928 1.625616 GTGAGTGGATCGGTGTTACG 58.374 55.000 0.00 0.00 0.00 3.18
1433 1931 1.990563 GAGTGGATCGGTGTTACGTTG 59.009 52.381 0.00 0.00 34.94 4.10
1434 1932 0.441145 GTGGATCGGTGTTACGTTGC 59.559 55.000 0.00 0.00 34.94 4.17
1435 1933 0.671163 TGGATCGGTGTTACGTTGCC 60.671 55.000 0.00 0.00 34.94 4.52
1436 1934 1.689352 GGATCGGTGTTACGTTGCCG 61.689 60.000 0.00 3.17 44.95 5.69
1437 1935 1.689352 GATCGGTGTTACGTTGCCGG 61.689 60.000 15.85 0.00 43.87 6.13
1438 1936 2.438951 ATCGGTGTTACGTTGCCGGT 62.439 55.000 1.90 9.06 43.87 5.28
1439 1937 2.246042 CGGTGTTACGTTGCCGGTT 61.246 57.895 1.90 0.00 40.45 4.44
1440 1938 1.280444 GGTGTTACGTTGCCGGTTG 59.720 57.895 1.90 0.00 38.78 3.77
1441 1939 1.159098 GGTGTTACGTTGCCGGTTGA 61.159 55.000 1.90 0.00 38.78 3.18
1442 1940 0.869730 GTGTTACGTTGCCGGTTGAT 59.130 50.000 1.90 0.00 38.78 2.57
1443 1941 0.869068 TGTTACGTTGCCGGTTGATG 59.131 50.000 1.90 0.00 38.78 3.07
1444 1942 0.453782 GTTACGTTGCCGGTTGATGC 60.454 55.000 1.90 0.00 38.78 3.91
1445 1943 0.604243 TTACGTTGCCGGTTGATGCT 60.604 50.000 1.90 0.00 38.78 3.79
1446 1944 0.604243 TACGTTGCCGGTTGATGCTT 60.604 50.000 1.90 0.00 38.78 3.91
1447 1945 1.154225 CGTTGCCGGTTGATGCTTC 60.154 57.895 1.90 0.00 0.00 3.86
1448 1946 1.154225 GTTGCCGGTTGATGCTTCG 60.154 57.895 1.90 0.00 0.00 3.79
1449 1947 2.976840 TTGCCGGTTGATGCTTCGC 61.977 57.895 1.90 0.00 0.00 4.70
1450 1948 3.430862 GCCGGTTGATGCTTCGCA 61.431 61.111 1.90 0.00 44.86 5.10
1459 1957 2.874315 TGCTTCGCATCGACGACG 60.874 61.111 0.00 0.00 42.78 5.12
1460 1958 3.607987 GCTTCGCATCGACGACGG 61.608 66.667 7.55 0.00 42.78 4.79
1461 1959 2.949678 CTTCGCATCGACGACGGG 60.950 66.667 7.55 0.00 42.78 5.28
1466 1964 2.949678 CATCGACGACGGGCGAAG 60.950 66.667 11.73 10.30 44.57 3.79
1467 1965 3.437795 ATCGACGACGGGCGAAGT 61.438 61.111 11.73 0.00 44.57 3.01
1468 1966 3.678717 ATCGACGACGGGCGAAGTG 62.679 63.158 11.73 0.00 44.57 3.16
1469 1967 4.695231 CGACGACGGGCGAAGTGT 62.695 66.667 11.73 0.00 44.57 3.55
1470 1968 2.355481 GACGACGGGCGAAGTGTT 60.355 61.111 11.73 0.00 44.57 3.32
1471 1969 1.952635 GACGACGGGCGAAGTGTTT 60.953 57.895 11.73 0.00 44.57 2.83
1472 1970 1.883725 GACGACGGGCGAAGTGTTTC 61.884 60.000 11.73 0.00 44.57 2.78
1473 1971 1.663702 CGACGGGCGAAGTGTTTCT 60.664 57.895 0.00 0.00 44.57 2.52
1474 1972 1.860078 GACGGGCGAAGTGTTTCTG 59.140 57.895 0.00 0.00 0.00 3.02
1475 1973 0.599204 GACGGGCGAAGTGTTTCTGA 60.599 55.000 0.00 0.00 0.00 3.27
1476 1974 0.179067 ACGGGCGAAGTGTTTCTGAA 60.179 50.000 0.00 0.00 0.00 3.02
1477 1975 1.156736 CGGGCGAAGTGTTTCTGAAT 58.843 50.000 0.00 0.00 0.00 2.57
1478 1976 1.535462 CGGGCGAAGTGTTTCTGAATT 59.465 47.619 0.00 0.00 0.00 2.17
1479 1977 2.665519 CGGGCGAAGTGTTTCTGAATTG 60.666 50.000 0.00 0.00 0.00 2.32
1480 1978 2.319472 GGCGAAGTGTTTCTGAATTGC 58.681 47.619 0.00 0.00 0.00 3.56
1481 1979 2.287547 GGCGAAGTGTTTCTGAATTGCA 60.288 45.455 0.00 0.00 0.00 4.08
1484 1982 4.539870 CGAAGTGTTTCTGAATTGCATGT 58.460 39.130 0.00 0.00 0.00 3.21
1498 2043 1.303799 GCATGTCTGAGGTGCTGTGG 61.304 60.000 6.88 0.00 36.02 4.17
1609 2155 6.984474 TCTTAATAGGACATGTTTCATCGGTC 59.016 38.462 0.00 0.00 0.00 4.79
1692 2238 3.732595 ACCTAGCCTTGGTAATGGTACT 58.267 45.455 0.00 0.00 35.80 2.73
1695 2241 1.564348 AGCCTTGGTAATGGTACTGGG 59.436 52.381 0.00 0.00 0.00 4.45
1696 2242 1.409661 GCCTTGGTAATGGTACTGGGG 60.410 57.143 0.00 0.00 0.00 4.96
1717 2263 3.181466 GGAAATTGGTGCTTTCTGGTGTT 60.181 43.478 0.00 0.00 33.93 3.32
1840 2389 7.750229 TCATATTTCTGTCTTGCTCAAGTTT 57.250 32.000 9.20 0.00 39.38 2.66
1852 2401 8.289618 GTCTTGCTCAAGTTTGTACATGAATTA 58.710 33.333 0.00 0.00 39.38 1.40
1863 2412 7.689446 TTGTACATGAATTAACCGGAAATCA 57.311 32.000 9.46 1.55 0.00 2.57
1869 2418 7.975616 ACATGAATTAACCGGAAATCAGAATTG 59.024 33.333 9.46 0.00 0.00 2.32
1885 2434 5.047590 TCAGAATTGCTCTAGTTTCGTACCA 60.048 40.000 0.00 0.00 31.12 3.25
1933 2482 4.281657 AGACAGAACCTTTTCAAAGCCTT 58.718 39.130 0.00 0.00 34.69 4.35
2101 2651 2.364448 GGGGGTCGCTCTTCTCCT 60.364 66.667 0.00 0.00 0.00 3.69
2143 2693 7.872138 TGAAATAGGGATAGTCTTGATTTGGT 58.128 34.615 0.00 0.00 0.00 3.67
2240 2790 6.040247 CCACAAATGAATCATGAATGAGTGG 58.960 40.000 0.00 8.36 40.64 4.00
2291 2842 4.141711 GGTGGAGGTTGTGCATAAGAGATA 60.142 45.833 0.00 0.00 0.00 1.98
2341 2892 6.227298 CTTGCTAAAGGAGGACTGAGATTA 57.773 41.667 0.00 0.00 0.00 1.75
2436 2999 5.990386 TGATAAGCAATGTTTGTTGTGCAAT 59.010 32.000 0.00 0.00 39.50 3.56
2457 3020 0.181587 TCCACTGCCTGTTCGGAAAA 59.818 50.000 0.00 0.00 33.16 2.29
2460 3023 1.002468 CACTGCCTGTTCGGAAAACAG 60.002 52.381 10.27 10.27 45.33 3.16
2536 3099 0.475828 ACCCTCCTTAGGCTGGTTGT 60.476 55.000 0.00 0.00 42.14 3.32
2869 3432 1.209504 TCCAGTGAAATAGGGAAGGCG 59.790 52.381 0.00 0.00 0.00 5.52
2954 3517 6.266558 AGTTGATGGTTTATTTGGTGCTTACA 59.733 34.615 0.00 0.00 0.00 2.41
3073 3640 2.833631 AGGTTGTTCCAAGAGGTACG 57.166 50.000 0.00 0.00 37.97 3.67
3288 3855 9.926158 CTCATGCTCTTATAATCTGATAGTGTT 57.074 33.333 0.00 0.00 0.00 3.32
3600 4174 4.479158 TGAATGGGTGAGCCTAAACTTTT 58.521 39.130 1.06 0.00 34.45 2.27
3706 4282 4.941263 TCGGTTCACCAAATTTCTATGGAG 59.059 41.667 0.82 0.00 39.12 3.86
3790 4367 4.038271 TCCTTTGAGAAGTCCAATGCAT 57.962 40.909 0.00 0.00 0.00 3.96
3861 4439 2.666272 TACCTGTGCACCATCCAAAA 57.334 45.000 15.69 0.00 0.00 2.44
3918 4496 8.783660 TCCTGTAGGAATTCATAGTAGTTGAT 57.216 34.615 7.93 0.00 42.18 2.57
4040 4618 9.869844 CTTGTTGTTGAAAGTTTAGACTCATAG 57.130 33.333 0.00 0.00 34.21 2.23
4117 4696 1.826096 TGGCATTGTGATGGATTGTGG 59.174 47.619 0.00 0.00 33.72 4.17
4120 4699 3.067180 GGCATTGTGATGGATTGTGGTAG 59.933 47.826 0.00 0.00 33.72 3.18
4242 5455 7.458409 TCGGTTAACAGAATTAGTGTAGACT 57.542 36.000 5.94 0.00 36.07 3.24
4244 5457 6.468319 CGGTTAACAGAATTAGTGTAGACTCG 59.532 42.308 8.10 0.00 33.21 4.18
4261 5474 4.806330 GACTCGTGTCTCCTGAACAATAA 58.194 43.478 10.29 0.00 39.94 1.40
4263 5476 5.171476 ACTCGTGTCTCCTGAACAATAATG 58.829 41.667 0.00 0.00 0.00 1.90
4264 5477 4.503910 TCGTGTCTCCTGAACAATAATGG 58.496 43.478 0.00 0.00 0.00 3.16
4288 5501 2.146342 GGATAGTGTCATCCGCATTGG 58.854 52.381 0.00 0.00 35.42 3.16
4377 5590 5.097742 TGTTATATGTTGACACCAGGAGG 57.902 43.478 0.00 0.00 42.21 4.30
4388 5601 1.850549 CCAGGAGGTCCCCACAAAA 59.149 57.895 0.00 0.00 36.42 2.44
4395 5608 4.140782 AGGAGGTCCCCACAAAACTAAAAT 60.141 41.667 0.00 0.00 36.42 1.82
4397 5610 4.552674 AGGTCCCCACAAAACTAAAATGT 58.447 39.130 0.00 0.00 0.00 2.71
4404 5619 9.976776 TCCCCACAAAACTAAAATGTGTATATA 57.023 29.630 4.65 0.00 42.17 0.86
4543 5758 1.532437 TGACTTTTCTGCAGTGCATCG 59.468 47.619 20.10 8.27 38.13 3.84
4550 5765 2.125391 GCAGTGCATCGGCTCTCA 60.125 61.111 11.09 0.00 41.64 3.27
4614 5836 0.521867 CGCAATTGAGTGGATGCACG 60.522 55.000 10.34 0.00 38.69 5.34
4618 5840 1.730501 ATTGAGTGGATGCACGTCTG 58.269 50.000 12.02 0.00 0.00 3.51
4627 5849 2.196749 GATGCACGTCTGTCTGTATGG 58.803 52.381 0.00 0.00 0.00 2.74
4733 6086 3.069300 TCTCTGCCAGAGCTTCATATGTC 59.931 47.826 17.08 0.00 42.04 3.06
4735 6088 2.104451 CTGCCAGAGCTTCATATGTCCT 59.896 50.000 1.90 0.00 40.80 3.85
4746 6099 8.256356 AGCTTCATATGTCCTAGAAATACTGT 57.744 34.615 1.90 0.00 0.00 3.55
4788 6146 5.500234 AGCTACTCCAAACAATGCTCATTA 58.500 37.500 0.00 0.00 0.00 1.90
4826 6184 2.331194 GTGATTGGACAAGTTGCATGC 58.669 47.619 11.82 11.82 0.00 4.06
4904 6262 1.200716 CAAGCATCACATGGCGTCTTT 59.799 47.619 0.00 0.00 34.54 2.52
4932 6290 6.884472 TTGTAGGGAATCCTAACTTGATCA 57.116 37.500 0.00 0.00 46.39 2.92
5113 6475 3.953775 CCGCCTTGGTCTGTGGGT 61.954 66.667 0.00 0.00 0.00 4.51
5148 6510 2.005451 CTAGCAGACCAGCATGTGTTC 58.995 52.381 0.00 0.00 36.85 3.18
5204 6566 6.128418 GGACTCTTACTTTTGCTTCTGCTTAG 60.128 42.308 0.00 0.00 40.48 2.18
5205 6567 5.703130 ACTCTTACTTTTGCTTCTGCTTAGG 59.297 40.000 0.00 0.00 40.48 2.69
5206 6568 5.621193 TCTTACTTTTGCTTCTGCTTAGGT 58.379 37.500 0.00 0.00 40.48 3.08
5207 6569 6.062095 TCTTACTTTTGCTTCTGCTTAGGTT 58.938 36.000 0.00 0.00 40.48 3.50
5208 6570 6.546034 TCTTACTTTTGCTTCTGCTTAGGTTT 59.454 34.615 0.00 0.00 40.48 3.27
5209 6571 4.936891 ACTTTTGCTTCTGCTTAGGTTTG 58.063 39.130 0.00 0.00 40.48 2.93
5214 6576 3.315191 TGCTTCTGCTTAGGTTTGTTGTC 59.685 43.478 0.00 0.00 40.48 3.18
5216 6578 3.188159 TCTGCTTAGGTTTGTTGTCGT 57.812 42.857 0.00 0.00 0.00 4.34
5217 6579 3.128349 TCTGCTTAGGTTTGTTGTCGTC 58.872 45.455 0.00 0.00 0.00 4.20
5218 6580 3.131396 CTGCTTAGGTTTGTTGTCGTCT 58.869 45.455 0.00 0.00 0.00 4.18
5228 6594 4.974368 TTGTTGTCGTCTTTGGAAACAT 57.026 36.364 0.00 0.00 42.32 2.71
5233 6599 3.559655 TGTCGTCTTTGGAAACATGAGTG 59.440 43.478 0.00 0.00 42.32 3.51
5244 6610 3.498774 AACATGAGTGTTGAGCTTCCT 57.501 42.857 0.00 0.00 46.43 3.36
5245 6611 3.051081 ACATGAGTGTTGAGCTTCCTC 57.949 47.619 0.00 0.00 34.01 3.71
5246 6612 2.369860 ACATGAGTGTTGAGCTTCCTCA 59.630 45.455 0.00 0.00 46.03 3.86
5256 6622 2.768527 TGAGCTTCCTCAATGAGTAGGG 59.231 50.000 9.63 0.00 44.79 3.53
5257 6623 1.488393 AGCTTCCTCAATGAGTAGGGC 59.512 52.381 9.63 7.85 33.40 5.19
5258 6624 1.210478 GCTTCCTCAATGAGTAGGGCA 59.790 52.381 9.63 0.00 33.40 5.36
5259 6625 2.158696 GCTTCCTCAATGAGTAGGGCAT 60.159 50.000 9.63 0.00 33.40 4.40
5260 6626 3.686691 GCTTCCTCAATGAGTAGGGCATT 60.687 47.826 9.63 0.00 36.45 3.56
5261 6627 4.530875 CTTCCTCAATGAGTAGGGCATTT 58.469 43.478 9.63 0.00 33.93 2.32
5262 6628 4.591321 TCCTCAATGAGTAGGGCATTTT 57.409 40.909 9.63 0.00 33.93 1.82
5263 6629 4.272489 TCCTCAATGAGTAGGGCATTTTG 58.728 43.478 9.63 0.00 33.93 2.44
5264 6630 3.382546 CCTCAATGAGTAGGGCATTTTGG 59.617 47.826 9.63 0.00 33.93 3.28
5265 6631 4.272489 CTCAATGAGTAGGGCATTTTGGA 58.728 43.478 1.31 0.00 33.93 3.53
5266 6632 4.870636 TCAATGAGTAGGGCATTTTGGAT 58.129 39.130 0.00 0.00 33.93 3.41
5267 6633 6.012337 TCAATGAGTAGGGCATTTTGGATA 57.988 37.500 0.00 0.00 33.93 2.59
5268 6634 5.827797 TCAATGAGTAGGGCATTTTGGATAC 59.172 40.000 0.00 0.00 33.93 2.24
5269 6635 5.653255 ATGAGTAGGGCATTTTGGATACT 57.347 39.130 0.00 0.00 37.61 2.12
5270 6636 4.780815 TGAGTAGGGCATTTTGGATACTG 58.219 43.478 0.00 0.00 37.61 2.74
5271 6637 4.473196 TGAGTAGGGCATTTTGGATACTGA 59.527 41.667 0.00 0.00 37.61 3.41
5272 6638 5.041191 AGTAGGGCATTTTGGATACTGAG 57.959 43.478 0.00 0.00 37.61 3.35
5273 6639 2.659428 AGGGCATTTTGGATACTGAGC 58.341 47.619 0.00 0.00 37.61 4.26
5274 6640 2.243221 AGGGCATTTTGGATACTGAGCT 59.757 45.455 0.00 0.00 37.61 4.09
5275 6641 2.620585 GGGCATTTTGGATACTGAGCTC 59.379 50.000 6.82 6.82 37.61 4.09
5276 6642 2.620585 GGCATTTTGGATACTGAGCTCC 59.379 50.000 12.15 0.00 37.61 4.70
5277 6643 3.549794 GCATTTTGGATACTGAGCTCCT 58.450 45.455 12.15 0.00 37.61 3.69
5278 6644 3.950395 GCATTTTGGATACTGAGCTCCTT 59.050 43.478 12.15 0.00 37.61 3.36
5279 6645 4.201990 GCATTTTGGATACTGAGCTCCTTG 60.202 45.833 12.15 4.07 37.61 3.61
5280 6646 4.908601 TTTTGGATACTGAGCTCCTTGA 57.091 40.909 12.15 0.00 37.61 3.02
5281 6647 4.908601 TTTGGATACTGAGCTCCTTGAA 57.091 40.909 12.15 0.00 37.61 2.69
5282 6648 4.908601 TTGGATACTGAGCTCCTTGAAA 57.091 40.909 12.15 0.00 37.61 2.69
5283 6649 5.441718 TTGGATACTGAGCTCCTTGAAAT 57.558 39.130 12.15 0.00 37.61 2.17
5284 6650 6.560003 TTGGATACTGAGCTCCTTGAAATA 57.440 37.500 12.15 0.00 37.61 1.40
5285 6651 6.753913 TGGATACTGAGCTCCTTGAAATAT 57.246 37.500 12.15 0.00 37.61 1.28
5286 6652 7.141758 TGGATACTGAGCTCCTTGAAATATT 57.858 36.000 12.15 0.00 37.61 1.28
5287 6653 7.220030 TGGATACTGAGCTCCTTGAAATATTC 58.780 38.462 12.15 0.00 37.61 1.75
5288 6654 7.147497 TGGATACTGAGCTCCTTGAAATATTCA 60.147 37.037 12.15 0.00 35.88 2.57
5289 6655 7.716998 GGATACTGAGCTCCTTGAAATATTCAA 59.283 37.037 12.15 5.50 46.68 2.69
5348 6714 9.578576 AAAAGATACACATATATGCAAGGATGT 57.421 29.630 12.79 10.45 32.78 3.06
5351 6717 9.881649 AGATACACATATATGCAAGGATGTAAG 57.118 33.333 12.79 3.39 31.41 2.34
5352 6718 9.875691 GATACACATATATGCAAGGATGTAAGA 57.124 33.333 12.79 0.00 31.41 2.10
5353 6719 9.881649 ATACACATATATGCAAGGATGTAAGAG 57.118 33.333 12.79 2.57 31.41 2.85
5354 6720 6.652481 ACACATATATGCAAGGATGTAAGAGC 59.348 38.462 12.79 0.00 31.41 4.09
5355 6721 6.877855 CACATATATGCAAGGATGTAAGAGCT 59.122 38.462 12.79 0.00 31.41 4.09
5356 6722 8.037166 CACATATATGCAAGGATGTAAGAGCTA 58.963 37.037 12.79 0.00 31.41 3.32
5357 6723 8.597167 ACATATATGCAAGGATGTAAGAGCTAA 58.403 33.333 12.79 0.00 30.83 3.09
5358 6724 8.877779 CATATATGCAAGGATGTAAGAGCTAAC 58.122 37.037 0.00 0.00 0.00 2.34
5359 6725 4.551702 TGCAAGGATGTAAGAGCTAACA 57.448 40.909 0.00 0.00 0.00 2.41
5360 6726 4.253685 TGCAAGGATGTAAGAGCTAACAC 58.746 43.478 0.00 0.00 0.00 3.32
5361 6727 4.020218 TGCAAGGATGTAAGAGCTAACACT 60.020 41.667 0.00 0.00 0.00 3.55
5362 6728 4.568760 GCAAGGATGTAAGAGCTAACACTC 59.431 45.833 0.00 0.00 36.91 3.51
5363 6729 4.640789 AGGATGTAAGAGCTAACACTCG 57.359 45.455 0.00 0.00 41.77 4.18
5364 6730 3.381908 AGGATGTAAGAGCTAACACTCGG 59.618 47.826 0.00 0.00 41.77 4.63
5365 6731 3.380637 GGATGTAAGAGCTAACACTCGGA 59.619 47.826 0.00 0.00 41.77 4.55
5366 6732 3.844577 TGTAAGAGCTAACACTCGGAC 57.155 47.619 0.00 0.00 41.77 4.79
5367 6733 2.161012 TGTAAGAGCTAACACTCGGACG 59.839 50.000 0.00 0.00 41.77 4.79
5368 6734 0.526662 AAGAGCTAACACTCGGACGG 59.473 55.000 0.00 0.00 41.77 4.79
5369 6735 1.139095 GAGCTAACACTCGGACGGG 59.861 63.158 0.00 0.00 0.00 5.28
5370 6736 1.593296 GAGCTAACACTCGGACGGGT 61.593 60.000 0.00 0.00 0.00 5.28
5375 6741 4.065281 CACTCGGACGGGTGGACC 62.065 72.222 16.48 0.00 42.54 4.46
5376 6742 4.608774 ACTCGGACGGGTGGACCA 62.609 66.667 0.00 0.00 40.22 4.02
5377 6743 3.760035 CTCGGACGGGTGGACCAG 61.760 72.222 0.00 0.00 40.22 4.00
5379 6745 2.677524 CGGACGGGTGGACCAGTA 60.678 66.667 1.24 0.00 44.40 2.74
5380 6746 2.707849 CGGACGGGTGGACCAGTAG 61.708 68.421 1.24 0.00 44.40 2.57
5381 6747 2.577593 GACGGGTGGACCAGTAGC 59.422 66.667 1.24 0.00 44.40 3.58
5382 6748 1.982938 GACGGGTGGACCAGTAGCT 60.983 63.158 1.24 0.00 44.40 3.32
5383 6749 2.227089 GACGGGTGGACCAGTAGCTG 62.227 65.000 1.24 0.00 44.40 4.24
5384 6750 1.982395 CGGGTGGACCAGTAGCTGA 60.982 63.158 0.00 0.00 40.22 4.26
5385 6751 1.597461 GGGTGGACCAGTAGCTGAC 59.403 63.158 0.00 0.00 39.85 3.51
5386 6752 1.597461 GGTGGACCAGTAGCTGACC 59.403 63.158 0.00 2.31 32.44 4.02
5387 6753 1.192146 GGTGGACCAGTAGCTGACCA 61.192 60.000 0.00 9.52 36.25 4.02
5388 6754 0.247736 GTGGACCAGTAGCTGACCAG 59.752 60.000 0.00 0.00 37.95 4.00
5389 6755 0.178932 TGGACCAGTAGCTGACCAGT 60.179 55.000 0.00 0.00 34.79 4.00
5390 6756 0.533032 GGACCAGTAGCTGACCAGTC 59.467 60.000 0.00 0.00 32.44 3.51
5391 6757 1.257743 GACCAGTAGCTGACCAGTCA 58.742 55.000 0.00 0.00 38.06 3.41
5392 6758 1.618837 GACCAGTAGCTGACCAGTCAA 59.381 52.381 0.00 0.00 39.39 3.18
5393 6759 2.037251 GACCAGTAGCTGACCAGTCAAA 59.963 50.000 0.00 0.00 39.39 2.69
5394 6760 2.438021 ACCAGTAGCTGACCAGTCAAAA 59.562 45.455 0.00 0.00 39.39 2.44
5395 6761 3.118038 ACCAGTAGCTGACCAGTCAAAAA 60.118 43.478 0.00 0.00 39.39 1.94
5414 6780 1.094785 AAAAATGATCCACTCGGGCG 58.905 50.000 0.00 0.00 36.21 6.13
5415 6781 1.376609 AAAATGATCCACTCGGGCGC 61.377 55.000 0.00 0.00 36.21 6.53
5416 6782 3.757248 AATGATCCACTCGGGCGCC 62.757 63.158 21.18 21.18 36.21 6.53
5418 6784 4.162690 GATCCACTCGGGCGCCTT 62.163 66.667 28.56 5.39 36.21 4.35
5419 6785 2.762459 ATCCACTCGGGCGCCTTA 60.762 61.111 28.56 13.92 36.21 2.69
5420 6786 2.306255 GATCCACTCGGGCGCCTTAA 62.306 60.000 28.56 11.14 36.21 1.85
5421 6787 1.906105 ATCCACTCGGGCGCCTTAAA 61.906 55.000 28.56 8.41 36.21 1.52
5422 6788 2.396157 CCACTCGGGCGCCTTAAAC 61.396 63.158 28.56 8.15 0.00 2.01
5423 6789 1.375523 CACTCGGGCGCCTTAAACT 60.376 57.895 28.56 0.77 0.00 2.66
5424 6790 1.375523 ACTCGGGCGCCTTAAACTG 60.376 57.895 28.56 11.94 0.00 3.16
5425 6791 1.079405 CTCGGGCGCCTTAAACTGA 60.079 57.895 28.56 8.48 0.00 3.41
5426 6792 1.359459 CTCGGGCGCCTTAAACTGAC 61.359 60.000 28.56 4.75 0.00 3.51
5427 6793 2.396157 CGGGCGCCTTAAACTGACC 61.396 63.158 28.56 3.90 0.00 4.02
5428 6794 1.002502 GGGCGCCTTAAACTGACCT 60.003 57.895 28.56 0.00 0.00 3.85
5429 6795 0.608308 GGGCGCCTTAAACTGACCTT 60.608 55.000 28.56 0.00 0.00 3.50
5430 6796 1.339342 GGGCGCCTTAAACTGACCTTA 60.339 52.381 28.56 0.00 0.00 2.69
5431 6797 2.429478 GGCGCCTTAAACTGACCTTAA 58.571 47.619 22.15 0.00 0.00 1.85
5432 6798 2.815503 GGCGCCTTAAACTGACCTTAAA 59.184 45.455 22.15 0.00 0.00 1.52
5433 6799 3.365666 GGCGCCTTAAACTGACCTTAAAC 60.366 47.826 22.15 0.00 0.00 2.01
5434 6800 3.666111 GCGCCTTAAACTGACCTTAAACG 60.666 47.826 0.00 0.00 0.00 3.60
5435 6801 3.495753 CGCCTTAAACTGACCTTAAACGT 59.504 43.478 0.00 0.00 0.00 3.99
5436 6802 4.376717 CGCCTTAAACTGACCTTAAACGTC 60.377 45.833 0.00 0.00 0.00 4.34
5437 6803 4.753610 GCCTTAAACTGACCTTAAACGTCT 59.246 41.667 0.00 0.00 0.00 4.18
5438 6804 5.333875 GCCTTAAACTGACCTTAAACGTCTG 60.334 44.000 0.00 7.36 35.84 3.51
5439 6805 5.178809 CCTTAAACTGACCTTAAACGTCTGG 59.821 44.000 11.52 0.00 34.51 3.86
5440 6806 2.165319 ACTGACCTTAAACGTCTGGC 57.835 50.000 11.52 0.00 34.51 4.85
5441 6807 1.414919 ACTGACCTTAAACGTCTGGCA 59.585 47.619 11.52 0.00 34.51 4.92
5442 6808 2.069273 CTGACCTTAAACGTCTGGCAG 58.931 52.381 8.58 8.58 0.00 4.85
5443 6809 1.414919 TGACCTTAAACGTCTGGCAGT 59.585 47.619 15.27 0.00 0.00 4.40
5444 6810 2.067013 GACCTTAAACGTCTGGCAGTC 58.933 52.381 15.27 8.16 0.00 3.51
5445 6811 1.270678 ACCTTAAACGTCTGGCAGTCC 60.271 52.381 15.27 5.65 0.00 3.85
5446 6812 1.068474 CTTAAACGTCTGGCAGTCCG 58.932 55.000 21.49 21.49 34.14 4.79
5447 6813 0.320073 TTAAACGTCTGGCAGTCCGG 60.320 55.000 24.83 0.00 40.23 5.14
5448 6814 1.466025 TAAACGTCTGGCAGTCCGGT 61.466 55.000 24.83 19.44 39.81 5.28
5449 6815 2.989055 AAACGTCTGGCAGTCCGGTG 62.989 60.000 24.83 8.10 39.81 4.94
5450 6816 3.991051 CGTCTGGCAGTCCGGTGT 61.991 66.667 15.27 0.00 39.81 4.16
5451 6817 2.048127 GTCTGGCAGTCCGGTGTC 60.048 66.667 15.27 0.00 39.81 3.67
5452 6818 2.203640 TCTGGCAGTCCGGTGTCT 60.204 61.111 15.27 0.00 39.81 3.41
5453 6819 2.262915 CTGGCAGTCCGGTGTCTC 59.737 66.667 6.28 0.00 33.91 3.36
5454 6820 2.203640 TGGCAGTCCGGTGTCTCT 60.204 61.111 0.00 0.00 34.14 3.10
5455 6821 2.219325 CTGGCAGTCCGGTGTCTCTC 62.219 65.000 6.28 0.00 33.91 3.20
5456 6822 2.276116 GGCAGTCCGGTGTCTCTCA 61.276 63.158 0.00 0.00 0.00 3.27
5457 6823 1.608717 GGCAGTCCGGTGTCTCTCAT 61.609 60.000 0.00 0.00 0.00 2.90
5458 6824 1.103803 GCAGTCCGGTGTCTCTCATA 58.896 55.000 0.00 0.00 0.00 2.15
5459 6825 1.683917 GCAGTCCGGTGTCTCTCATAT 59.316 52.381 0.00 0.00 0.00 1.78
5460 6826 2.287909 GCAGTCCGGTGTCTCTCATATC 60.288 54.545 0.00 0.00 0.00 1.63
5461 6827 2.294791 CAGTCCGGTGTCTCTCATATCC 59.705 54.545 0.00 0.00 0.00 2.59
5462 6828 2.091830 AGTCCGGTGTCTCTCATATCCA 60.092 50.000 0.00 0.00 0.00 3.41
5463 6829 2.294791 GTCCGGTGTCTCTCATATCCAG 59.705 54.545 0.00 0.00 0.00 3.86
5464 6830 2.174854 TCCGGTGTCTCTCATATCCAGA 59.825 50.000 0.00 0.00 0.00 3.86
5465 6831 2.294791 CCGGTGTCTCTCATATCCAGAC 59.705 54.545 0.00 0.00 37.63 3.51
5466 6832 2.294791 CGGTGTCTCTCATATCCAGACC 59.705 54.545 0.00 0.00 36.49 3.85
5467 6833 3.300388 GGTGTCTCTCATATCCAGACCA 58.700 50.000 0.00 0.00 36.49 4.02
5468 6834 3.706594 GGTGTCTCTCATATCCAGACCAA 59.293 47.826 0.00 0.00 36.49 3.67
5469 6835 4.162320 GGTGTCTCTCATATCCAGACCAAA 59.838 45.833 0.00 0.00 36.49 3.28
5470 6836 5.163258 GGTGTCTCTCATATCCAGACCAAAT 60.163 44.000 0.00 0.00 36.49 2.32
5471 6837 5.757320 GTGTCTCTCATATCCAGACCAAATG 59.243 44.000 0.00 0.00 36.49 2.32
5472 6838 5.163269 TGTCTCTCATATCCAGACCAAATGG 60.163 44.000 0.00 0.00 36.49 3.16
5485 6851 2.318908 CCAAATGGTGGGTGGATATGG 58.681 52.381 0.00 0.00 44.64 2.74
5486 6852 2.318908 CAAATGGTGGGTGGATATGGG 58.681 52.381 0.00 0.00 0.00 4.00
5487 6853 0.859760 AATGGTGGGTGGATATGGGG 59.140 55.000 0.00 0.00 0.00 4.96
5488 6854 0.329434 ATGGTGGGTGGATATGGGGT 60.329 55.000 0.00 0.00 0.00 4.95
5489 6855 1.285573 TGGTGGGTGGATATGGGGTG 61.286 60.000 0.00 0.00 0.00 4.61
5490 6856 1.536676 GTGGGTGGATATGGGGTGG 59.463 63.158 0.00 0.00 0.00 4.61
5491 6857 2.391130 TGGGTGGATATGGGGTGGC 61.391 63.158 0.00 0.00 0.00 5.01
5492 6858 2.520968 GGTGGATATGGGGTGGCC 59.479 66.667 0.00 0.00 0.00 5.36
5493 6859 2.520968 GTGGATATGGGGTGGCCC 59.479 66.667 0.00 0.00 44.51 5.80
5494 6860 3.174987 TGGATATGGGGTGGCCCG 61.175 66.667 0.00 0.00 46.66 6.13
5495 6861 3.966543 GGATATGGGGTGGCCCGG 61.967 72.222 0.00 0.00 46.66 5.73
5496 6862 3.966543 GATATGGGGTGGCCCGGG 61.967 72.222 19.09 19.09 46.66 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.072131 TCAACCAAATTCCACTGCTACTC 58.928 43.478 0.00 0.00 0.00 2.59
33 34 5.597806 TCAGAATAATTGTATCGGCTTCGT 58.402 37.500 0.00 0.00 35.06 3.85
69 70 8.795842 TTCGGTGTAATTTGTATGGACTTATT 57.204 30.769 0.00 0.00 0.00 1.40
100 104 9.542462 GATATTACAACCATAAGCACTAGACAA 57.458 33.333 0.00 0.00 0.00 3.18
182 208 2.621055 ACTTTTGTGCTAATGCCGTGAA 59.379 40.909 0.00 0.00 38.71 3.18
240 267 1.234821 TCCGTTGCCAAGTGATGTTC 58.765 50.000 0.00 0.00 0.00 3.18
379 410 1.770294 TTTTGAGGCAACCCTTCGTT 58.230 45.000 0.00 0.00 43.12 3.85
380 411 1.770294 TTTTTGAGGCAACCCTTCGT 58.230 45.000 0.00 0.00 43.12 3.85
400 431 5.076873 TCTCCCCTTCGTTTGATGATTTTT 58.923 37.500 0.00 0.00 0.00 1.94
401 432 4.662278 TCTCCCCTTCGTTTGATGATTTT 58.338 39.130 0.00 0.00 0.00 1.82
402 433 4.019321 TCTCTCCCCTTCGTTTGATGATTT 60.019 41.667 0.00 0.00 0.00 2.17
403 434 3.519510 TCTCTCCCCTTCGTTTGATGATT 59.480 43.478 0.00 0.00 0.00 2.57
465 496 2.262211 CTGACGCGATGAGATCACAAA 58.738 47.619 15.93 0.00 0.00 2.83
534 566 1.246056 TTCTTGCTGCCAGGTGATGC 61.246 55.000 0.50 0.00 0.00 3.91
541 573 2.775890 TCTTCTTCTTCTTGCTGCCAG 58.224 47.619 0.00 0.00 0.00 4.85
566 598 2.033801 GCTTCTTCTTGCTGCAAAGTGA 59.966 45.455 16.74 7.59 0.00 3.41
567 599 2.223641 TGCTTCTTCTTGCTGCAAAGTG 60.224 45.455 16.74 5.17 0.00 3.16
568 600 2.026641 TGCTTCTTCTTGCTGCAAAGT 58.973 42.857 16.74 0.00 0.00 2.66
569 601 2.223641 TGTGCTTCTTCTTGCTGCAAAG 60.224 45.455 16.74 11.77 35.34 2.77
570 602 1.750206 TGTGCTTCTTCTTGCTGCAAA 59.250 42.857 16.74 1.34 35.34 3.68
571 603 1.391577 TGTGCTTCTTCTTGCTGCAA 58.608 45.000 15.16 15.16 35.34 4.08
572 604 1.538512 GATGTGCTTCTTCTTGCTGCA 59.461 47.619 0.00 0.00 0.00 4.41
573 605 1.135460 GGATGTGCTTCTTCTTGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
574 606 2.434428 AGGATGTGCTTCTTCTTGCTG 58.566 47.619 0.00 0.00 0.00 4.41
575 607 2.875094 AGGATGTGCTTCTTCTTGCT 57.125 45.000 0.00 0.00 0.00 3.91
576 608 3.254166 TGAAAGGATGTGCTTCTTCTTGC 59.746 43.478 0.00 0.00 0.00 4.01
577 609 5.044428 CTGAAAGGATGTGCTTCTTCTTG 57.956 43.478 0.00 0.00 0.00 3.02
598 630 1.303970 GCTTCTTGCCTGCTTCCCT 60.304 57.895 0.00 0.00 35.15 4.20
603 635 1.339291 GTTTCTTGCTTCTTGCCTGCT 59.661 47.619 0.00 0.00 42.00 4.24
607 639 0.030638 TGCGTTTCTTGCTTCTTGCC 59.969 50.000 0.00 0.00 42.00 4.52
609 641 2.111756 GTGTGCGTTTCTTGCTTCTTG 58.888 47.619 0.00 0.00 0.00 3.02
614 646 2.526304 TCTAGTGTGCGTTTCTTGCT 57.474 45.000 0.00 0.00 0.00 3.91
615 647 3.307242 CCTATCTAGTGTGCGTTTCTTGC 59.693 47.826 0.00 0.00 0.00 4.01
626 658 4.098196 GGTCTTTCTTCGCCTATCTAGTGT 59.902 45.833 0.00 0.00 0.00 3.55
630 662 3.068307 GCTGGTCTTTCTTCGCCTATCTA 59.932 47.826 0.00 0.00 0.00 1.98
636 668 0.951558 TTTGCTGGTCTTTCTTCGCC 59.048 50.000 0.00 0.00 0.00 5.54
637 669 2.605580 CCTTTTGCTGGTCTTTCTTCGC 60.606 50.000 0.00 0.00 0.00 4.70
646 678 0.811281 CCCGATTCCTTTTGCTGGTC 59.189 55.000 0.00 0.00 0.00 4.02
651 684 2.356069 GTCTCATCCCGATTCCTTTTGC 59.644 50.000 0.00 0.00 0.00 3.68
653 686 2.906354 CGTCTCATCCCGATTCCTTTT 58.094 47.619 0.00 0.00 0.00 2.27
657 690 0.598680 CTGCGTCTCATCCCGATTCC 60.599 60.000 0.00 0.00 0.00 3.01
659 692 1.000283 GATCTGCGTCTCATCCCGATT 60.000 52.381 0.00 0.00 0.00 3.34
667 700 1.066422 GATGGCGATCTGCGTCTCA 59.934 57.895 0.81 0.00 46.81 3.27
725 769 1.674057 CTCCTTCCACAGGCGACTT 59.326 57.895 0.00 0.00 43.55 3.01
726 770 2.286523 CCTCCTTCCACAGGCGACT 61.287 63.158 0.00 0.00 43.55 4.18
733 777 2.046023 CATGCGCCTCCTTCCACA 60.046 61.111 4.18 0.00 0.00 4.17
734 778 2.045926 ACATGCGCCTCCTTCCAC 60.046 61.111 4.18 0.00 0.00 4.02
742 790 2.434336 TCCTGTATAAAGACATGCGCCT 59.566 45.455 4.18 0.00 0.00 5.52
748 796 5.364157 GGGTGTCTCTCCTGTATAAAGACAT 59.636 44.000 6.77 0.00 45.63 3.06
749 797 4.710375 GGGTGTCTCTCCTGTATAAAGACA 59.290 45.833 0.00 0.00 42.88 3.41
750 798 4.710375 TGGGTGTCTCTCCTGTATAAAGAC 59.290 45.833 0.00 0.00 37.47 3.01
751 799 4.942944 TGGGTGTCTCTCCTGTATAAAGA 58.057 43.478 0.00 0.00 0.00 2.52
752 800 5.665459 CTTGGGTGTCTCTCCTGTATAAAG 58.335 45.833 0.00 0.00 0.00 1.85
760 808 1.159664 AGGCTTGGGTGTCTCTCCT 59.840 57.895 0.00 0.00 0.00 3.69
761 809 1.194781 TCAGGCTTGGGTGTCTCTCC 61.195 60.000 0.00 0.00 0.00 3.71
762 810 0.036858 GTCAGGCTTGGGTGTCTCTC 60.037 60.000 0.00 0.00 0.00 3.20
763 811 0.764369 TGTCAGGCTTGGGTGTCTCT 60.764 55.000 0.00 0.00 0.00 3.10
765 813 1.344953 TGTGTCAGGCTTGGGTGTCT 61.345 55.000 0.00 0.00 0.00 3.41
766 814 0.250901 ATGTGTCAGGCTTGGGTGTC 60.251 55.000 0.00 0.00 0.00 3.67
767 815 0.250901 GATGTGTCAGGCTTGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
768 816 0.037303 AGATGTGTCAGGCTTGGGTG 59.963 55.000 0.00 0.00 0.00 4.61
771 819 0.325933 TCCAGATGTGTCAGGCTTGG 59.674 55.000 0.00 0.00 31.43 3.61
773 821 2.553904 CCTTTCCAGATGTGTCAGGCTT 60.554 50.000 0.00 0.00 31.43 4.35
774 822 1.004044 CCTTTCCAGATGTGTCAGGCT 59.996 52.381 0.00 0.00 31.43 4.58
775 823 1.457346 CCTTTCCAGATGTGTCAGGC 58.543 55.000 0.00 0.00 31.43 4.85
776 824 1.271543 TGCCTTTCCAGATGTGTCAGG 60.272 52.381 0.00 0.00 32.56 3.86
777 825 1.808945 GTGCCTTTCCAGATGTGTCAG 59.191 52.381 0.00 0.00 0.00 3.51
778 826 1.545428 GGTGCCTTTCCAGATGTGTCA 60.545 52.381 0.00 0.00 0.00 3.58
779 827 1.168714 GGTGCCTTTCCAGATGTGTC 58.831 55.000 0.00 0.00 0.00 3.67
780 828 0.251341 GGGTGCCTTTCCAGATGTGT 60.251 55.000 0.00 0.00 0.00 3.72
781 829 0.251297 TGGGTGCCTTTCCAGATGTG 60.251 55.000 0.00 0.00 0.00 3.21
782 830 0.251341 GTGGGTGCCTTTCCAGATGT 60.251 55.000 0.00 0.00 33.13 3.06
783 831 0.967380 GGTGGGTGCCTTTCCAGATG 60.967 60.000 0.00 0.00 33.13 2.90
785 833 1.360393 AAGGTGGGTGCCTTTCCAGA 61.360 55.000 0.00 0.00 45.91 3.86
793 841 0.542805 TACGGATTAAGGTGGGTGCC 59.457 55.000 0.00 0.00 0.00 5.01
799 847 4.210724 TCTGGGTTTACGGATTAAGGTG 57.789 45.455 0.00 0.00 0.00 4.00
800 848 4.914177 TTCTGGGTTTACGGATTAAGGT 57.086 40.909 0.00 0.00 0.00 3.50
802 850 6.093633 CCTTCTTTCTGGGTTTACGGATTAAG 59.906 42.308 0.00 0.00 0.00 1.85
806 854 3.872630 GCCTTCTTTCTGGGTTTACGGAT 60.873 47.826 0.00 0.00 0.00 4.18
819 867 6.663944 ACAACATATTAGACGCCTTCTTTC 57.336 37.500 0.00 0.00 35.55 2.62
820 868 6.255020 CGTACAACATATTAGACGCCTTCTTT 59.745 38.462 0.00 0.00 35.55 2.52
821 869 5.747197 CGTACAACATATTAGACGCCTTCTT 59.253 40.000 0.00 0.00 35.55 2.52
827 875 5.937165 TTGTCGTACAACATATTAGACGC 57.063 39.130 0.00 0.00 32.34 5.19
833 881 4.377635 GCGTGGTTTGTCGTACAACATATT 60.378 41.667 0.00 0.00 37.90 1.28
834 882 3.123959 GCGTGGTTTGTCGTACAACATAT 59.876 43.478 0.00 0.00 37.90 1.78
835 883 2.475864 GCGTGGTTTGTCGTACAACATA 59.524 45.455 0.00 0.00 37.90 2.29
837 885 0.651551 GCGTGGTTTGTCGTACAACA 59.348 50.000 0.00 0.00 37.90 3.33
839 887 1.366679 TTGCGTGGTTTGTCGTACAA 58.633 45.000 0.00 0.00 36.11 2.41
840 888 1.328069 CTTTGCGTGGTTTGTCGTACA 59.672 47.619 0.00 0.00 0.00 2.90
841 889 1.333435 CCTTTGCGTGGTTTGTCGTAC 60.333 52.381 0.00 0.00 0.00 3.67
845 893 4.319249 GCCTTTGCGTGGTTTGTC 57.681 55.556 0.00 0.00 0.00 3.18
874 924 1.141881 CTCCAGGCGCTGACGTATT 59.858 57.895 7.64 0.00 42.83 1.89
877 927 3.753434 CTCTCCAGGCGCTGACGT 61.753 66.667 7.64 0.00 42.83 4.34
885 935 0.618968 TCCCTTTCCTCTCTCCAGGC 60.619 60.000 0.00 0.00 32.91 4.85
887 937 2.765699 CTCTTCCCTTTCCTCTCTCCAG 59.234 54.545 0.00 0.00 0.00 3.86
888 938 2.560841 CCTCTTCCCTTTCCTCTCTCCA 60.561 54.545 0.00 0.00 0.00 3.86
889 939 2.115427 CCTCTTCCCTTTCCTCTCTCC 58.885 57.143 0.00 0.00 0.00 3.71
890 940 3.031013 CTCCTCTTCCCTTTCCTCTCTC 58.969 54.545 0.00 0.00 0.00 3.20
891 941 2.385417 ACTCCTCTTCCCTTTCCTCTCT 59.615 50.000 0.00 0.00 0.00 3.10
892 942 2.764010 GACTCCTCTTCCCTTTCCTCTC 59.236 54.545 0.00 0.00 0.00 3.20
893 943 2.385417 AGACTCCTCTTCCCTTTCCTCT 59.615 50.000 0.00 0.00 0.00 3.69
896 946 1.834896 GGAGACTCCTCTTCCCTTTCC 59.165 57.143 14.72 0.00 39.38 3.13
897 947 1.478916 CGGAGACTCCTCTTCCCTTTC 59.521 57.143 19.39 0.00 39.38 2.62
898 948 1.562783 CGGAGACTCCTCTTCCCTTT 58.437 55.000 19.39 0.00 39.38 3.11
899 949 0.973496 GCGGAGACTCCTCTTCCCTT 60.973 60.000 19.39 0.00 39.38 3.95
900 950 1.380650 GCGGAGACTCCTCTTCCCT 60.381 63.158 19.39 0.00 39.38 4.20
901 951 1.682684 TGCGGAGACTCCTCTTCCC 60.683 63.158 19.39 1.84 39.38 3.97
904 954 2.344203 CCGTGCGGAGACTCCTCTT 61.344 63.158 19.39 0.00 39.38 2.85
905 955 2.752238 CCGTGCGGAGACTCCTCT 60.752 66.667 19.39 0.00 39.38 3.69
913 963 1.153939 CTCTCTCAACCGTGCGGAG 60.154 63.158 18.16 9.29 38.96 4.63
914 964 1.863662 GACTCTCTCAACCGTGCGGA 61.864 60.000 18.16 0.00 38.96 5.54
915 965 1.444553 GACTCTCTCAACCGTGCGG 60.445 63.158 9.29 9.29 42.03 5.69
927 983 1.478510 TCTTGGATGCCTTCGACTCTC 59.521 52.381 0.00 0.00 0.00 3.20
940 997 1.384191 GCCAGGGTTGGTCTTGGAT 59.616 57.895 0.00 0.00 46.80 3.41
952 1009 2.600173 TTTTTGAGCCGGCCAGGG 60.600 61.111 26.15 4.07 41.48 4.45
1031 1529 2.520741 GCGGAGAGGAGAGGAGGG 60.521 72.222 0.00 0.00 0.00 4.30
1034 1532 2.598467 GAGGCGGAGAGGAGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
1095 1593 1.341778 CGAGTGACTAGGGGTAGGGTT 60.342 57.143 0.00 0.00 0.00 4.11
1101 1599 3.450115 GCGCGAGTGACTAGGGGT 61.450 66.667 12.10 0.00 0.00 4.95
1376 1874 2.647158 GCGACGAGGAGGAAACCCT 61.647 63.158 0.00 0.00 36.57 4.34
1407 1905 0.832135 ACACCGATCCACTCACCACT 60.832 55.000 0.00 0.00 0.00 4.00
1430 1928 1.154225 CGAAGCATCAACCGGCAAC 60.154 57.895 0.00 0.00 0.00 4.17
1444 1942 2.949678 CCCGTCGTCGATGCGAAG 60.950 66.667 18.67 12.18 42.82 3.79
1449 1947 2.949678 CTTCGCCCGTCGTCGATG 60.950 66.667 7.51 7.51 39.71 3.84
1450 1948 3.437795 ACTTCGCCCGTCGTCGAT 61.438 61.111 2.98 0.00 39.71 3.59
1451 1949 4.394078 CACTTCGCCCGTCGTCGA 62.394 66.667 2.98 0.00 39.71 4.20
1452 1950 4.695231 ACACTTCGCCCGTCGTCG 62.695 66.667 0.00 0.00 39.67 5.12
1453 1951 1.883725 GAAACACTTCGCCCGTCGTC 61.884 60.000 0.00 0.00 39.67 4.20
1454 1952 1.952635 GAAACACTTCGCCCGTCGT 60.953 57.895 0.00 0.00 39.67 4.34
1455 1953 1.663702 AGAAACACTTCGCCCGTCG 60.664 57.895 0.00 0.00 36.61 5.12
1456 1954 0.599204 TCAGAAACACTTCGCCCGTC 60.599 55.000 0.00 0.00 36.61 4.79
1457 1955 0.179067 TTCAGAAACACTTCGCCCGT 60.179 50.000 0.00 0.00 36.61 5.28
1458 1956 1.156736 ATTCAGAAACACTTCGCCCG 58.843 50.000 0.00 0.00 36.61 6.13
1459 1957 2.922335 GCAATTCAGAAACACTTCGCCC 60.922 50.000 0.00 0.00 36.61 6.13
1460 1958 2.287547 TGCAATTCAGAAACACTTCGCC 60.288 45.455 0.00 0.00 36.61 5.54
1461 1959 2.998772 TGCAATTCAGAAACACTTCGC 58.001 42.857 0.00 0.00 36.61 4.70
1462 1960 4.539870 ACATGCAATTCAGAAACACTTCG 58.460 39.130 0.00 0.00 36.61 3.79
1463 1961 5.628193 CAGACATGCAATTCAGAAACACTTC 59.372 40.000 0.00 0.00 0.00 3.01
1464 1962 5.300034 TCAGACATGCAATTCAGAAACACTT 59.700 36.000 0.00 0.00 0.00 3.16
1465 1963 4.823442 TCAGACATGCAATTCAGAAACACT 59.177 37.500 0.00 0.00 0.00 3.55
1466 1964 5.112220 TCAGACATGCAATTCAGAAACAC 57.888 39.130 0.00 0.00 0.00 3.32
1467 1965 4.216902 CCTCAGACATGCAATTCAGAAACA 59.783 41.667 0.00 0.00 0.00 2.83
1468 1966 4.217118 ACCTCAGACATGCAATTCAGAAAC 59.783 41.667 0.00 0.00 0.00 2.78
1469 1967 4.216902 CACCTCAGACATGCAATTCAGAAA 59.783 41.667 0.00 0.00 0.00 2.52
1470 1968 3.754850 CACCTCAGACATGCAATTCAGAA 59.245 43.478 0.00 0.00 0.00 3.02
1471 1969 3.340928 CACCTCAGACATGCAATTCAGA 58.659 45.455 0.00 0.00 0.00 3.27
1472 1970 2.159421 GCACCTCAGACATGCAATTCAG 60.159 50.000 0.00 0.00 39.23 3.02
1473 1971 1.814394 GCACCTCAGACATGCAATTCA 59.186 47.619 0.00 0.00 39.23 2.57
1474 1972 2.089980 AGCACCTCAGACATGCAATTC 58.910 47.619 0.00 0.00 41.97 2.17
1475 1973 1.816835 CAGCACCTCAGACATGCAATT 59.183 47.619 0.00 0.00 41.97 2.32
1476 1974 1.271762 ACAGCACCTCAGACATGCAAT 60.272 47.619 0.00 0.00 41.97 3.56
1477 1975 0.109153 ACAGCACCTCAGACATGCAA 59.891 50.000 0.00 0.00 41.97 4.08
1478 1976 0.604511 CACAGCACCTCAGACATGCA 60.605 55.000 0.00 0.00 41.97 3.96
1479 1977 1.303799 CCACAGCACCTCAGACATGC 61.304 60.000 0.00 0.00 39.74 4.06
1480 1978 0.035881 ACCACAGCACCTCAGACATG 59.964 55.000 0.00 0.00 0.00 3.21
1481 1979 1.644509 TACCACAGCACCTCAGACAT 58.355 50.000 0.00 0.00 0.00 3.06
1484 1982 2.906389 AGATTTACCACAGCACCTCAGA 59.094 45.455 0.00 0.00 0.00 3.27
1609 2155 1.342474 TGGGCAGGGAGTAGAGAGAAG 60.342 57.143 0.00 0.00 0.00 2.85
1692 2238 1.969923 CAGAAAGCACCAATTTCCCCA 59.030 47.619 0.00 0.00 37.37 4.96
1695 2241 2.365293 ACACCAGAAAGCACCAATTTCC 59.635 45.455 0.00 0.00 37.37 3.13
1696 2242 3.733443 ACACCAGAAAGCACCAATTTC 57.267 42.857 0.00 0.00 37.00 2.17
1746 2293 2.136298 TTGACAAACTTGGCTGTGGA 57.864 45.000 0.00 0.00 37.03 4.02
1813 2361 7.814642 ACTTGAGCAAGACAGAAATATGAAAG 58.185 34.615 16.47 0.00 40.79 2.62
1840 2389 7.106890 TCTGATTTCCGGTTAATTCATGTACA 58.893 34.615 0.00 0.00 0.00 2.90
1852 2401 3.690460 AGAGCAATTCTGATTTCCGGTT 58.310 40.909 0.00 0.00 33.93 4.44
1863 2412 5.401531 TGGTACGAAACTAGAGCAATTCT 57.598 39.130 0.00 0.00 40.06 2.40
1869 2418 3.259064 TGCATTGGTACGAAACTAGAGC 58.741 45.455 0.00 0.00 0.00 4.09
1933 2482 1.781025 CTTCGTCTTGCGGTTTGCCA 61.781 55.000 0.00 0.00 45.60 4.92
2101 2651 7.994911 CCCTATTTCAATATATAGGCAGCATGA 59.005 37.037 0.00 0.00 41.29 3.07
2143 2693 6.069673 TCTGGATTTCCTAACTGGCAAGATTA 60.070 38.462 0.00 0.00 36.82 1.75
2221 2771 6.017357 CGATGACCACTCATTCATGATTCATT 60.017 38.462 0.00 0.00 37.24 2.57
2240 2790 7.795431 TTTGAAGATTAAAACATGCGATGAC 57.205 32.000 0.00 0.00 0.00 3.06
2291 2842 7.147976 GCAAATCATAAACTGGAGAAAAGTGT 58.852 34.615 0.00 0.00 0.00 3.55
2396 2951 9.888878 ATTGCTTATCAATGAACAGAATAATCG 57.111 29.630 0.00 0.00 43.40 3.34
2428 2991 1.068895 CAGGCAGTGGAAATTGCACAA 59.931 47.619 19.30 0.00 41.46 3.33
2436 2999 0.181587 TTCCGAACAGGCAGTGGAAA 59.818 50.000 0.18 0.00 40.77 3.13
2457 3020 6.891908 ACATCCATAAATTTAGAACTGCCTGT 59.108 34.615 3.94 1.60 0.00 4.00
2460 3023 8.850156 ACATACATCCATAAATTTAGAACTGCC 58.150 33.333 3.94 0.00 0.00 4.85
2536 3099 5.811796 TTAGTTGCCTTTGTCAGGTAGTA 57.188 39.130 0.00 0.00 46.07 1.82
2869 3432 4.628766 GGACCTTACGTTGTTCTTCCATAC 59.371 45.833 0.00 0.00 0.00 2.39
3073 3640 0.947244 CAACACTGACTGCACCTTCC 59.053 55.000 0.00 0.00 0.00 3.46
3288 3855 7.962441 TGCTCTAATATGTGTTCTAGCCAATA 58.038 34.615 0.00 0.00 0.00 1.90
3290 3857 6.233905 TGCTCTAATATGTGTTCTAGCCAA 57.766 37.500 0.00 0.00 0.00 4.52
3430 3997 9.066892 TCAATAACCATATTCCTGATTTACAGC 57.933 33.333 0.00 0.00 36.20 4.40
3706 4282 5.071788 TGGAATGGAGTGTATAGGAATGGAC 59.928 44.000 0.00 0.00 0.00 4.02
3790 4367 5.130311 AGAGAGTAGAGAGATAGAGTGCACA 59.870 44.000 21.04 0.00 0.00 4.57
3927 4505 5.134339 TGCAGGGATAGGGAAAATGTAAGAT 59.866 40.000 0.00 0.00 0.00 2.40
3939 4517 2.175499 TCTTTGGATTGCAGGGATAGGG 59.825 50.000 0.00 0.00 0.00 3.53
4033 4611 4.292186 ACTTGGTGATGCAACTATGAGT 57.708 40.909 0.00 0.00 0.00 3.41
4040 4618 0.319813 GGCCAACTTGGTGATGCAAC 60.320 55.000 9.63 0.00 40.46 4.17
4117 4696 7.721399 ACATCAATGATTCTGGGGTTAATCTAC 59.279 37.037 0.00 0.00 34.00 2.59
4120 4699 6.774656 AGACATCAATGATTCTGGGGTTAATC 59.225 38.462 0.00 0.00 33.57 1.75
4220 5433 7.272948 CACGAGTCTACACTAATTCTGTTAACC 59.727 40.741 2.48 0.00 30.63 2.85
4242 5455 4.503910 CCATTATTGTTCAGGAGACACGA 58.496 43.478 0.00 0.00 0.00 4.35
4244 5457 3.378427 GGCCATTATTGTTCAGGAGACAC 59.622 47.826 0.00 0.00 0.00 3.67
4252 5465 5.132502 CACTATCCTGGCCATTATTGTTCA 58.867 41.667 5.51 0.00 0.00 3.18
4261 5474 1.701847 GGATGACACTATCCTGGCCAT 59.298 52.381 5.51 0.00 42.73 4.40
4263 5476 0.034059 CGGATGACACTATCCTGGCC 59.966 60.000 0.00 0.00 43.64 5.36
4264 5477 0.601311 GCGGATGACACTATCCTGGC 60.601 60.000 0.00 0.00 43.64 4.85
4288 5501 7.493367 AGAACAGCTTGAATAGGAGTATACAC 58.507 38.462 5.50 0.00 0.00 2.90
4377 5590 5.270893 ACACATTTTAGTTTTGTGGGGAC 57.729 39.130 7.15 0.00 43.88 4.46
4395 5608 9.428097 CAGCTGCATTAGAGAAATATATACACA 57.572 33.333 0.00 0.00 0.00 3.72
4404 5619 6.376299 TCATTGTTCAGCTGCATTAGAGAAAT 59.624 34.615 9.47 0.00 0.00 2.17
4406 5621 5.247862 TCATTGTTCAGCTGCATTAGAGAA 58.752 37.500 9.47 0.00 0.00 2.87
4410 5625 5.244785 ACATCATTGTTCAGCTGCATTAG 57.755 39.130 9.47 0.00 29.55 1.73
4411 5626 5.047872 ACAACATCATTGTTCAGCTGCATTA 60.048 36.000 9.47 0.00 44.24 1.90
4412 5627 4.242475 CAACATCATTGTTCAGCTGCATT 58.758 39.130 9.47 0.00 44.24 3.56
4472 5687 3.891786 CAACTGCTGCATTAGAGCG 57.108 52.632 1.31 0.00 39.47 5.03
4543 5758 4.833390 ACCACTAACAAACTATGAGAGCC 58.167 43.478 0.00 0.00 0.00 4.70
4550 5765 5.488341 CAGCCTGTACCACTAACAAACTAT 58.512 41.667 0.00 0.00 0.00 2.12
4614 5836 1.202582 AGCACGTCCATACAGACAGAC 59.797 52.381 0.00 0.00 36.52 3.51
4618 5840 2.531206 GAGAAGCACGTCCATACAGAC 58.469 52.381 0.00 0.00 0.00 3.51
4627 5849 1.527311 GTCACAAAGGAGAAGCACGTC 59.473 52.381 0.00 0.00 0.00 4.34
4691 6043 7.172361 GCAGAGAGAGTTTTACTTGACAAATCT 59.828 37.037 0.00 0.00 0.00 2.40
4733 6086 3.201290 CAGCCAGCACAGTATTTCTAGG 58.799 50.000 0.00 0.00 0.00 3.02
4735 6088 2.680805 GCCAGCCAGCACAGTATTTCTA 60.681 50.000 0.00 0.00 0.00 2.10
4904 6262 5.514500 AGTTAGGATTCCCTACAAAAGCA 57.486 39.130 0.00 0.00 44.42 3.91
4932 6290 3.470709 CGTATGGCAGGTTGAGATGATT 58.529 45.455 0.00 0.00 0.00 2.57
5113 6475 7.508687 TGGTCTGCTAGAAATGCATTATCTAA 58.491 34.615 13.39 7.38 39.86 2.10
5204 6566 3.768468 TTCCAAAGACGACAACAAACC 57.232 42.857 0.00 0.00 0.00 3.27
5205 6567 4.477780 TGTTTCCAAAGACGACAACAAAC 58.522 39.130 0.00 0.00 0.00 2.93
5206 6568 4.768130 TGTTTCCAAAGACGACAACAAA 57.232 36.364 0.00 0.00 0.00 2.83
5207 6569 4.396478 TCATGTTTCCAAAGACGACAACAA 59.604 37.500 0.00 0.00 0.00 2.83
5208 6570 3.942115 TCATGTTTCCAAAGACGACAACA 59.058 39.130 0.00 0.00 0.00 3.33
5209 6571 4.035208 ACTCATGTTTCCAAAGACGACAAC 59.965 41.667 0.00 0.00 0.00 3.32
5228 6594 3.071457 TCATTGAGGAAGCTCAACACTCA 59.929 43.478 0.00 0.00 44.79 3.41
5233 6599 4.187694 CCTACTCATTGAGGAAGCTCAAC 58.812 47.826 17.66 0.00 44.79 3.18
5240 6606 4.591321 AAATGCCCTACTCATTGAGGAA 57.409 40.909 17.66 4.92 34.67 3.36
5241 6607 4.272489 CAAAATGCCCTACTCATTGAGGA 58.728 43.478 17.66 8.56 34.67 3.71
5242 6608 3.382546 CCAAAATGCCCTACTCATTGAGG 59.617 47.826 17.66 2.14 34.67 3.86
5243 6609 4.272489 TCCAAAATGCCCTACTCATTGAG 58.728 43.478 12.17 12.17 34.67 3.02
5244 6610 4.314522 TCCAAAATGCCCTACTCATTGA 57.685 40.909 0.00 0.00 34.67 2.57
5245 6611 5.829924 AGTATCCAAAATGCCCTACTCATTG 59.170 40.000 0.00 0.00 34.67 2.82
5246 6612 5.829924 CAGTATCCAAAATGCCCTACTCATT 59.170 40.000 0.00 0.00 35.83 2.57
5247 6613 5.132648 TCAGTATCCAAAATGCCCTACTCAT 59.867 40.000 0.00 0.00 0.00 2.90
5248 6614 4.473196 TCAGTATCCAAAATGCCCTACTCA 59.527 41.667 0.00 0.00 0.00 3.41
5249 6615 5.036117 TCAGTATCCAAAATGCCCTACTC 57.964 43.478 0.00 0.00 0.00 2.59
5250 6616 4.687219 GCTCAGTATCCAAAATGCCCTACT 60.687 45.833 0.00 0.00 0.00 2.57
5251 6617 3.565902 GCTCAGTATCCAAAATGCCCTAC 59.434 47.826 0.00 0.00 0.00 3.18
5252 6618 3.459598 AGCTCAGTATCCAAAATGCCCTA 59.540 43.478 0.00 0.00 0.00 3.53
5253 6619 2.243221 AGCTCAGTATCCAAAATGCCCT 59.757 45.455 0.00 0.00 0.00 5.19
5254 6620 2.620585 GAGCTCAGTATCCAAAATGCCC 59.379 50.000 9.40 0.00 0.00 5.36
5255 6621 2.620585 GGAGCTCAGTATCCAAAATGCC 59.379 50.000 17.19 0.00 35.54 4.40
5256 6622 3.549794 AGGAGCTCAGTATCCAAAATGC 58.450 45.455 17.19 0.00 38.12 3.56
5257 6623 5.188434 TCAAGGAGCTCAGTATCCAAAATG 58.812 41.667 17.19 0.00 38.12 2.32
5258 6624 5.441718 TCAAGGAGCTCAGTATCCAAAAT 57.558 39.130 17.19 0.00 38.12 1.82
5259 6625 4.908601 TCAAGGAGCTCAGTATCCAAAA 57.091 40.909 17.19 0.00 38.12 2.44
5260 6626 4.908601 TTCAAGGAGCTCAGTATCCAAA 57.091 40.909 17.19 0.00 38.12 3.28
5261 6627 4.908601 TTTCAAGGAGCTCAGTATCCAA 57.091 40.909 17.19 0.00 38.12 3.53
5262 6628 6.753913 ATATTTCAAGGAGCTCAGTATCCA 57.246 37.500 17.19 0.00 38.12 3.41
5263 6629 7.220030 TGAATATTTCAAGGAGCTCAGTATCC 58.780 38.462 17.19 0.00 36.59 2.59
5264 6630 8.668510 TTGAATATTTCAAGGAGCTCAGTATC 57.331 34.615 17.19 0.00 44.21 2.24
5322 6688 9.578576 ACATCCTTGCATATATGTGTATCTTTT 57.421 29.630 14.14 0.00 31.56 2.27
5325 6691 9.881649 CTTACATCCTTGCATATATGTGTATCT 57.118 33.333 14.14 0.00 34.54 1.98
5326 6692 9.875691 TCTTACATCCTTGCATATATGTGTATC 57.124 33.333 14.14 0.00 34.54 2.24
5327 6693 9.881649 CTCTTACATCCTTGCATATATGTGTAT 57.118 33.333 14.14 0.00 34.54 2.29
5328 6694 7.819415 GCTCTTACATCCTTGCATATATGTGTA 59.181 37.037 14.14 10.23 34.54 2.90
5329 6695 6.652481 GCTCTTACATCCTTGCATATATGTGT 59.348 38.462 14.14 11.12 34.54 3.72
5330 6696 6.877855 AGCTCTTACATCCTTGCATATATGTG 59.122 38.462 14.14 5.98 34.54 3.21
5331 6697 7.013823 AGCTCTTACATCCTTGCATATATGT 57.986 36.000 14.14 11.57 36.56 2.29
5332 6698 8.877779 GTTAGCTCTTACATCCTTGCATATATG 58.122 37.037 8.45 8.45 0.00 1.78
5333 6699 8.597167 TGTTAGCTCTTACATCCTTGCATATAT 58.403 33.333 0.00 0.00 0.00 0.86
5334 6700 7.872993 GTGTTAGCTCTTACATCCTTGCATATA 59.127 37.037 0.00 0.00 0.00 0.86
5335 6701 6.708054 GTGTTAGCTCTTACATCCTTGCATAT 59.292 38.462 0.00 0.00 0.00 1.78
5336 6702 6.049149 GTGTTAGCTCTTACATCCTTGCATA 58.951 40.000 0.00 0.00 0.00 3.14
5337 6703 4.878397 GTGTTAGCTCTTACATCCTTGCAT 59.122 41.667 0.00 0.00 0.00 3.96
5338 6704 4.020218 AGTGTTAGCTCTTACATCCTTGCA 60.020 41.667 0.00 0.00 0.00 4.08
5339 6705 4.508662 AGTGTTAGCTCTTACATCCTTGC 58.491 43.478 0.00 0.00 0.00 4.01
5340 6706 4.800993 CGAGTGTTAGCTCTTACATCCTTG 59.199 45.833 0.00 0.00 33.55 3.61
5341 6707 4.142138 CCGAGTGTTAGCTCTTACATCCTT 60.142 45.833 0.00 0.00 33.55 3.36
5342 6708 3.381908 CCGAGTGTTAGCTCTTACATCCT 59.618 47.826 0.00 0.00 33.55 3.24
5343 6709 3.380637 TCCGAGTGTTAGCTCTTACATCC 59.619 47.826 0.00 0.00 33.55 3.51
5344 6710 4.352887 GTCCGAGTGTTAGCTCTTACATC 58.647 47.826 0.00 0.00 33.55 3.06
5345 6711 3.181499 CGTCCGAGTGTTAGCTCTTACAT 60.181 47.826 0.00 0.00 33.55 2.29
5346 6712 2.161012 CGTCCGAGTGTTAGCTCTTACA 59.839 50.000 0.00 0.00 33.55 2.41
5347 6713 2.477525 CCGTCCGAGTGTTAGCTCTTAC 60.478 54.545 0.00 0.00 33.55 2.34
5348 6714 1.741706 CCGTCCGAGTGTTAGCTCTTA 59.258 52.381 0.00 0.00 33.55 2.10
5349 6715 0.526662 CCGTCCGAGTGTTAGCTCTT 59.473 55.000 0.00 0.00 33.55 2.85
5350 6716 1.313812 CCCGTCCGAGTGTTAGCTCT 61.314 60.000 0.00 0.00 33.55 4.09
5351 6717 1.139095 CCCGTCCGAGTGTTAGCTC 59.861 63.158 0.00 0.00 0.00 4.09
5352 6718 1.605738 ACCCGTCCGAGTGTTAGCT 60.606 57.895 0.00 0.00 0.00 3.32
5353 6719 1.445582 CACCCGTCCGAGTGTTAGC 60.446 63.158 0.00 0.00 0.00 3.09
5354 6720 1.214589 CCACCCGTCCGAGTGTTAG 59.785 63.158 0.79 0.00 31.88 2.34
5355 6721 1.228521 TCCACCCGTCCGAGTGTTA 60.229 57.895 0.79 0.00 31.88 2.41
5356 6722 2.522436 TCCACCCGTCCGAGTGTT 60.522 61.111 0.79 0.00 31.88 3.32
5357 6723 3.300765 GTCCACCCGTCCGAGTGT 61.301 66.667 0.79 0.00 31.88 3.55
5358 6724 4.065281 GGTCCACCCGTCCGAGTG 62.065 72.222 0.00 0.00 0.00 3.51
5359 6725 4.608774 TGGTCCACCCGTCCGAGT 62.609 66.667 0.00 0.00 35.15 4.18
5360 6726 3.760035 CTGGTCCACCCGTCCGAG 61.760 72.222 0.00 0.00 35.15 4.63
5361 6727 3.208623 TACTGGTCCACCCGTCCGA 62.209 63.158 0.00 0.00 35.10 4.55
5362 6728 2.677524 TACTGGTCCACCCGTCCG 60.678 66.667 0.00 0.00 35.10 4.79
5363 6729 3.015312 GCTACTGGTCCACCCGTCC 62.015 68.421 0.00 0.00 35.10 4.79
5364 6730 1.982938 AGCTACTGGTCCACCCGTC 60.983 63.158 0.00 0.00 35.10 4.79
5365 6731 2.119832 AGCTACTGGTCCACCCGT 59.880 61.111 0.00 0.00 37.27 5.28
5366 6732 1.982395 TCAGCTACTGGTCCACCCG 60.982 63.158 0.00 0.00 35.15 5.28
5367 6733 1.597461 GTCAGCTACTGGTCCACCC 59.403 63.158 0.00 0.00 34.29 4.61
5368 6734 1.192146 TGGTCAGCTACTGGTCCACC 61.192 60.000 7.83 3.30 33.76 4.61
5369 6735 0.247736 CTGGTCAGCTACTGGTCCAC 59.752 60.000 7.83 0.00 34.47 4.02
5370 6736 0.178932 ACTGGTCAGCTACTGGTCCA 60.179 55.000 10.32 10.32 35.80 4.02
5371 6737 0.533032 GACTGGTCAGCTACTGGTCC 59.467 60.000 0.00 0.00 31.51 4.46
5372 6738 1.257743 TGACTGGTCAGCTACTGGTC 58.742 55.000 0.00 0.00 34.14 4.02
5373 6739 1.717032 TTGACTGGTCAGCTACTGGT 58.283 50.000 3.62 0.00 41.13 4.00
5374 6740 2.839486 TTTGACTGGTCAGCTACTGG 57.161 50.000 3.62 0.00 41.13 4.00
5395 6761 1.094785 CGCCCGAGTGGATCATTTTT 58.905 50.000 0.00 0.00 37.49 1.94
5396 6762 1.376609 GCGCCCGAGTGGATCATTTT 61.377 55.000 0.00 0.00 37.49 1.82
5397 6763 1.819632 GCGCCCGAGTGGATCATTT 60.820 57.895 0.00 0.00 37.49 2.32
5398 6764 2.203070 GCGCCCGAGTGGATCATT 60.203 61.111 0.00 0.00 37.49 2.57
5399 6765 4.241555 GGCGCCCGAGTGGATCAT 62.242 66.667 18.11 0.00 37.49 2.45
5401 6767 2.306255 TTAAGGCGCCCGAGTGGATC 62.306 60.000 26.15 0.00 37.49 3.36
5402 6768 1.906105 TTTAAGGCGCCCGAGTGGAT 61.906 55.000 26.15 0.00 37.49 3.41
5403 6769 2.585341 TTTAAGGCGCCCGAGTGGA 61.585 57.895 26.15 0.00 37.49 4.02
5404 6770 2.046700 TTTAAGGCGCCCGAGTGG 60.047 61.111 26.15 0.00 37.09 4.00
5405 6771 1.375523 AGTTTAAGGCGCCCGAGTG 60.376 57.895 26.15 0.00 0.00 3.51
5406 6772 1.375523 CAGTTTAAGGCGCCCGAGT 60.376 57.895 26.15 8.97 0.00 4.18
5407 6773 1.079405 TCAGTTTAAGGCGCCCGAG 60.079 57.895 26.15 6.55 0.00 4.63
5408 6774 1.375013 GTCAGTTTAAGGCGCCCGA 60.375 57.895 26.15 8.66 0.00 5.14
5409 6775 2.396157 GGTCAGTTTAAGGCGCCCG 61.396 63.158 26.15 2.92 0.00 6.13
5410 6776 0.608308 AAGGTCAGTTTAAGGCGCCC 60.608 55.000 26.15 7.28 0.00 6.13
5411 6777 2.103537 TAAGGTCAGTTTAAGGCGCC 57.896 50.000 21.89 21.89 0.00 6.53
5412 6778 3.666111 CGTTTAAGGTCAGTTTAAGGCGC 60.666 47.826 0.00 0.00 0.00 6.53
5413 6779 3.495753 ACGTTTAAGGTCAGTTTAAGGCG 59.504 43.478 0.00 0.00 0.00 5.52
5414 6780 4.753610 AGACGTTTAAGGTCAGTTTAAGGC 59.246 41.667 18.09 0.00 35.60 4.35
5415 6781 5.178809 CCAGACGTTTAAGGTCAGTTTAAGG 59.821 44.000 18.09 6.08 35.60 2.69
5416 6782 5.333875 GCCAGACGTTTAAGGTCAGTTTAAG 60.334 44.000 18.09 1.16 35.60 1.85
5417 6783 4.512571 GCCAGACGTTTAAGGTCAGTTTAA 59.487 41.667 18.09 0.00 35.60 1.52
5418 6784 4.060205 GCCAGACGTTTAAGGTCAGTTTA 58.940 43.478 18.09 0.00 35.60 2.01
5419 6785 2.876550 GCCAGACGTTTAAGGTCAGTTT 59.123 45.455 18.09 0.00 35.60 2.66
5420 6786 2.158871 TGCCAGACGTTTAAGGTCAGTT 60.159 45.455 18.09 0.00 35.60 3.16
5421 6787 1.414919 TGCCAGACGTTTAAGGTCAGT 59.585 47.619 18.09 0.00 35.60 3.41
5422 6788 2.069273 CTGCCAGACGTTTAAGGTCAG 58.931 52.381 18.09 11.03 35.60 3.51
5423 6789 1.414919 ACTGCCAGACGTTTAAGGTCA 59.585 47.619 18.09 0.00 35.60 4.02
5424 6790 2.067013 GACTGCCAGACGTTTAAGGTC 58.933 52.381 9.47 9.47 33.51 3.85
5425 6791 1.270678 GGACTGCCAGACGTTTAAGGT 60.271 52.381 0.00 0.00 0.00 3.50
5426 6792 1.439679 GGACTGCCAGACGTTTAAGG 58.560 55.000 0.00 0.00 0.00 2.69
5427 6793 1.068474 CGGACTGCCAGACGTTTAAG 58.932 55.000 0.00 0.00 0.00 1.85
5428 6794 0.320073 CCGGACTGCCAGACGTTTAA 60.320 55.000 0.00 0.00 0.00 1.52
5429 6795 1.290955 CCGGACTGCCAGACGTTTA 59.709 57.895 0.00 0.00 0.00 2.01
5430 6796 2.030562 CCGGACTGCCAGACGTTT 59.969 61.111 0.00 0.00 0.00 3.60
5431 6797 3.231736 ACCGGACTGCCAGACGTT 61.232 61.111 9.46 0.00 0.00 3.99
5432 6798 3.991051 CACCGGACTGCCAGACGT 61.991 66.667 9.46 0.00 0.00 4.34
5433 6799 3.916392 GACACCGGACTGCCAGACG 62.916 68.421 9.46 2.40 0.00 4.18
5434 6800 2.048127 GACACCGGACTGCCAGAC 60.048 66.667 9.46 0.00 0.00 3.51
5435 6801 2.203640 AGACACCGGACTGCCAGA 60.204 61.111 9.46 0.00 0.00 3.86
5436 6802 2.219325 GAGAGACACCGGACTGCCAG 62.219 65.000 9.46 0.00 0.00 4.85
5437 6803 2.203640 AGAGACACCGGACTGCCA 60.204 61.111 9.46 0.00 0.00 4.92
5438 6804 1.608717 ATGAGAGACACCGGACTGCC 61.609 60.000 9.46 0.00 0.00 4.85
5439 6805 1.103803 TATGAGAGACACCGGACTGC 58.896 55.000 9.46 0.00 0.00 4.40
5440 6806 2.294791 GGATATGAGAGACACCGGACTG 59.705 54.545 9.46 0.00 0.00 3.51
5441 6807 2.091830 TGGATATGAGAGACACCGGACT 60.092 50.000 9.46 4.06 0.00 3.85
5442 6808 2.294791 CTGGATATGAGAGACACCGGAC 59.705 54.545 9.46 0.00 0.00 4.79
5443 6809 2.174854 TCTGGATATGAGAGACACCGGA 59.825 50.000 9.46 0.00 0.00 5.14
5444 6810 2.294791 GTCTGGATATGAGAGACACCGG 59.705 54.545 0.00 0.00 36.83 5.28
5445 6811 2.294791 GGTCTGGATATGAGAGACACCG 59.705 54.545 0.00 0.00 38.30 4.94
5446 6812 3.300388 TGGTCTGGATATGAGAGACACC 58.700 50.000 0.00 0.00 38.30 4.16
5447 6813 5.344743 TTTGGTCTGGATATGAGAGACAC 57.655 43.478 0.00 0.00 38.30 3.67
5448 6814 5.163269 CCATTTGGTCTGGATATGAGAGACA 60.163 44.000 0.00 0.00 38.30 3.41
5449 6815 5.303971 CCATTTGGTCTGGATATGAGAGAC 58.696 45.833 0.00 0.00 35.70 3.36
5450 6816 5.557576 CCATTTGGTCTGGATATGAGAGA 57.442 43.478 0.00 0.00 35.70 3.10
5465 6831 2.318908 CCATATCCACCCACCATTTGG 58.681 52.381 0.00 0.00 46.47 3.28
5466 6832 2.318908 CCCATATCCACCCACCATTTG 58.681 52.381 0.00 0.00 0.00 2.32
5467 6833 1.220236 CCCCATATCCACCCACCATTT 59.780 52.381 0.00 0.00 0.00 2.32
5468 6834 0.859760 CCCCATATCCACCCACCATT 59.140 55.000 0.00 0.00 0.00 3.16
5469 6835 0.329434 ACCCCATATCCACCCACCAT 60.329 55.000 0.00 0.00 0.00 3.55
5470 6836 1.085796 ACCCCATATCCACCCACCA 59.914 57.895 0.00 0.00 0.00 4.17
5471 6837 1.536676 CACCCCATATCCACCCACC 59.463 63.158 0.00 0.00 0.00 4.61
5472 6838 1.536676 CCACCCCATATCCACCCAC 59.463 63.158 0.00 0.00 0.00 4.61
5473 6839 2.391130 GCCACCCCATATCCACCCA 61.391 63.158 0.00 0.00 0.00 4.51
5474 6840 2.520968 GCCACCCCATATCCACCC 59.479 66.667 0.00 0.00 0.00 4.61
5475 6841 2.520968 GGCCACCCCATATCCACC 59.479 66.667 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.