Multiple sequence alignment - TraesCS3B01G316400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G316400 chr3B 100.000 2315 0 0 1 2315 508249428 508251742 0.000000e+00 4276.0
1 TraesCS3B01G316400 chr3B 96.667 270 9 0 1 270 545569564 545569295 1.260000e-122 449.0
2 TraesCS3B01G316400 chr3B 86.306 314 40 3 267 579 947067 947378 2.850000e-89 339.0
3 TraesCS3B01G316400 chr3B 86.306 314 40 3 267 579 949011 949322 2.850000e-89 339.0
4 TraesCS3B01G316400 chr3B 100.000 37 0 0 2216 2252 508251607 508251643 4.130000e-08 69.4
5 TraesCS3B01G316400 chr3B 100.000 37 0 0 2180 2216 508251643 508251679 4.130000e-08 69.4
6 TraesCS3B01G316400 chr3D 92.494 906 43 7 836 1720 390663036 390663937 0.000000e+00 1273.0
7 TraesCS3B01G316400 chr3D 88.925 307 32 2 266 571 420987542 420987237 6.040000e-101 377.0
8 TraesCS3B01G316400 chr3D 89.427 227 16 2 1892 2118 390664812 390665030 1.750000e-71 279.0
9 TraesCS3B01G316400 chr3D 81.029 311 48 10 267 572 512956090 512956394 1.070000e-58 237.0
10 TraesCS3B01G316400 chr3D 97.872 94 2 0 2216 2309 390665324 390665417 1.840000e-36 163.0
11 TraesCS3B01G316400 chr3D 93.902 82 5 0 2135 2216 390665279 390665360 8.680000e-25 124.0
12 TraesCS3B01G316400 chr3A 90.560 911 47 16 836 1729 511070749 511071637 0.000000e+00 1170.0
13 TraesCS3B01G316400 chr3A 92.378 328 18 4 1892 2216 511073818 511074141 5.830000e-126 460.0
14 TraesCS3B01G316400 chr3A 92.737 179 11 2 570 747 517937390 517937213 8.210000e-65 257.0
15 TraesCS3B01G316400 chr3A 83.083 266 35 9 570 833 631811449 631811192 1.380000e-57 233.0
16 TraesCS3B01G316400 chr3A 98.630 73 1 0 2216 2288 511074105 511074177 1.870000e-26 130.0
17 TraesCS3B01G316400 chr2D 97.037 270 8 0 1 270 156821999 156821730 2.710000e-124 455.0
18 TraesCS3B01G316400 chr2D 91.758 182 12 3 570 751 156821733 156821555 1.370000e-62 250.0
19 TraesCS3B01G316400 chr1D 97.037 270 8 0 1 270 494863880 494863611 2.710000e-124 455.0
20 TraesCS3B01G316400 chr1D 96.310 271 9 1 1 270 12408834 12408564 5.870000e-121 444.0
21 TraesCS3B01G316400 chr1D 96.310 271 9 1 1 270 430428393 430428663 5.870000e-121 444.0
22 TraesCS3B01G316400 chr1D 90.228 307 27 3 266 571 111848217 111848521 4.630000e-107 398.0
23 TraesCS3B01G316400 chr1D 93.370 181 10 2 570 750 430427163 430426985 1.360000e-67 267.0
24 TraesCS3B01G316400 chr4D 96.667 270 9 0 1 270 333461186 333460917 1.260000e-122 449.0
25 TraesCS3B01G316400 chr2A 96.667 270 9 0 1 270 646864276 646864545 1.260000e-122 449.0
26 TraesCS3B01G316400 chr2B 96.324 272 8 1 1 270 752598562 752598833 1.630000e-121 446.0
27 TraesCS3B01G316400 chr2B 93.923 181 9 2 570 750 594852635 594852457 2.930000e-69 272.0
28 TraesCS3B01G316400 chr2B 80.606 165 27 4 422 586 725604220 725604061 3.120000e-24 122.0
29 TraesCS3B01G316400 chr6D 96.310 271 9 1 1 270 328343255 328342985 5.870000e-121 444.0
30 TraesCS3B01G316400 chr6D 80.745 322 51 10 263 579 470084214 470083899 8.270000e-60 241.0
31 TraesCS3B01G316400 chr5D 92.079 303 23 1 270 571 557954649 557954347 2.130000e-115 425.0
32 TraesCS3B01G316400 chr5D 88.889 315 29 6 259 571 221824267 221824577 1.300000e-102 383.0
33 TraesCS3B01G316400 chr5D 93.923 181 10 1 570 750 433994631 433994452 2.930000e-69 272.0
34 TraesCS3B01G316400 chr5D 93.258 178 11 1 570 747 458265859 458266035 6.340000e-66 261.0
35 TraesCS3B01G316400 chr7D 89.610 308 30 2 266 572 11768518 11768212 7.760000e-105 390.0
36 TraesCS3B01G316400 chr7D 89.286 308 31 2 266 572 11807107 11806801 3.610000e-103 385.0
37 TraesCS3B01G316400 chr7D 92.697 178 11 2 570 747 192143989 192144164 2.950000e-64 255.0
38 TraesCS3B01G316400 chrUn 89.286 308 28 5 266 572 89754324 89754021 4.670000e-102 381.0
39 TraesCS3B01G316400 chrUn 88.746 311 32 3 263 571 103496897 103496588 6.040000e-101 377.0
40 TraesCS3B01G316400 chr4B 88.350 309 34 2 264 571 549200367 549200060 1.010000e-98 370.0
41 TraesCS3B01G316400 chr5B 93.370 181 11 1 570 750 434912277 434912098 1.360000e-67 267.0
42 TraesCS3B01G316400 chr6A 92.697 178 12 1 573 750 49116029 49115853 2.950000e-64 255.0
43 TraesCS3B01G316400 chr7A 79.385 325 51 13 265 581 243651408 243651092 5.010000e-52 215.0
44 TraesCS3B01G316400 chr7A 89.024 82 7 2 750 830 630438935 630439015 1.460000e-17 100.0
45 TraesCS3B01G316400 chr1B 90.625 96 9 0 483 578 619947215 619947120 6.710000e-26 128.0
46 TraesCS3B01G316400 chr5A 89.583 96 10 0 483 578 463267873 463267778 3.120000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G316400 chr3B 508249428 508251742 2314 False 1471.600000 4276 100.00000 1 2315 3 chr3B.!!$F2 2314
1 TraesCS3B01G316400 chr3B 947067 949322 2255 False 339.000000 339 86.30600 267 579 2 chr3B.!!$F1 312
2 TraesCS3B01G316400 chr3D 390663036 390665417 2381 False 459.750000 1273 93.42375 836 2309 4 chr3D.!!$F2 1473
3 TraesCS3B01G316400 chr3A 511070749 511074177 3428 False 586.666667 1170 93.85600 836 2288 3 chr3A.!!$F1 1452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 754 0.035458 ACAGTAGAGCAGGTGTTGGC 59.965 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 5553 0.037975 ATCGTTCGGTTTAGCGTGGT 60.038 50.0 1.03 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.306680 TCGCCAATTAATTACTACTGATAAGC 57.693 34.615 0.00 0.00 0.00 3.09
79 80 7.929245 TCGCCAATTAATTACTACTGATAAGCA 59.071 33.333 0.00 0.00 0.00 3.91
80 81 8.556194 CGCCAATTAATTACTACTGATAAGCAA 58.444 33.333 0.00 0.00 0.00 3.91
91 92 8.621532 ACTACTGATAAGCAAATTCACAAAGA 57.378 30.769 0.00 0.00 0.00 2.52
92 93 9.066892 ACTACTGATAAGCAAATTCACAAAGAA 57.933 29.630 0.00 0.00 41.28 2.52
93 94 9.334693 CTACTGATAAGCAAATTCACAAAGAAC 57.665 33.333 0.00 0.00 39.49 3.01
94 95 7.147976 ACTGATAAGCAAATTCACAAAGAACC 58.852 34.615 0.00 0.00 39.49 3.62
95 96 7.048629 TGATAAGCAAATTCACAAAGAACCA 57.951 32.000 0.00 0.00 39.49 3.67
96 97 7.147312 TGATAAGCAAATTCACAAAGAACCAG 58.853 34.615 0.00 0.00 39.49 4.00
97 98 5.343307 AAGCAAATTCACAAAGAACCAGT 57.657 34.783 0.00 0.00 39.49 4.00
98 99 6.463995 AAGCAAATTCACAAAGAACCAGTA 57.536 33.333 0.00 0.00 39.49 2.74
99 100 6.076981 AGCAAATTCACAAAGAACCAGTAG 57.923 37.500 0.00 0.00 39.49 2.57
100 101 4.681483 GCAAATTCACAAAGAACCAGTAGC 59.319 41.667 0.00 0.00 39.49 3.58
101 102 5.735922 GCAAATTCACAAAGAACCAGTAGCA 60.736 40.000 0.00 0.00 39.49 3.49
102 103 6.272318 CAAATTCACAAAGAACCAGTAGCAA 58.728 36.000 0.00 0.00 39.49 3.91
103 104 6.463995 AATTCACAAAGAACCAGTAGCAAA 57.536 33.333 0.00 0.00 39.49 3.68
104 105 5.906113 TTCACAAAGAACCAGTAGCAAAA 57.094 34.783 0.00 0.00 0.00 2.44
105 106 5.906113 TCACAAAGAACCAGTAGCAAAAA 57.094 34.783 0.00 0.00 0.00 1.94
106 107 5.890334 TCACAAAGAACCAGTAGCAAAAAG 58.110 37.500 0.00 0.00 0.00 2.27
107 108 5.650266 TCACAAAGAACCAGTAGCAAAAAGA 59.350 36.000 0.00 0.00 0.00 2.52
108 109 6.151985 TCACAAAGAACCAGTAGCAAAAAGAA 59.848 34.615 0.00 0.00 0.00 2.52
109 110 6.980397 CACAAAGAACCAGTAGCAAAAAGAAT 59.020 34.615 0.00 0.00 0.00 2.40
110 111 7.168135 CACAAAGAACCAGTAGCAAAAAGAATC 59.832 37.037 0.00 0.00 0.00 2.52
111 112 6.959639 AAGAACCAGTAGCAAAAAGAATCA 57.040 33.333 0.00 0.00 0.00 2.57
112 113 7.530426 AAGAACCAGTAGCAAAAAGAATCAT 57.470 32.000 0.00 0.00 0.00 2.45
113 114 7.150783 AGAACCAGTAGCAAAAAGAATCATC 57.849 36.000 0.00 0.00 0.00 2.92
114 115 6.944862 AGAACCAGTAGCAAAAAGAATCATCT 59.055 34.615 0.00 0.00 37.57 2.90
115 116 6.506500 ACCAGTAGCAAAAAGAATCATCTG 57.493 37.500 0.00 0.00 35.59 2.90
116 117 6.240894 ACCAGTAGCAAAAAGAATCATCTGA 58.759 36.000 0.00 0.00 35.59 3.27
117 118 6.716628 ACCAGTAGCAAAAAGAATCATCTGAA 59.283 34.615 0.00 0.00 35.59 3.02
118 119 7.231317 ACCAGTAGCAAAAAGAATCATCTGAAA 59.769 33.333 0.00 0.00 35.59 2.69
119 120 8.084073 CCAGTAGCAAAAAGAATCATCTGAAAA 58.916 33.333 0.00 0.00 35.59 2.29
120 121 9.467258 CAGTAGCAAAAAGAATCATCTGAAAAA 57.533 29.630 0.00 0.00 35.59 1.94
144 145 9.508642 AAAATACTCCTAGCTCAAATTATAGGC 57.491 33.333 0.00 0.00 35.71 3.93
145 146 7.798710 ATACTCCTAGCTCAAATTATAGGCA 57.201 36.000 0.00 0.00 35.71 4.75
146 147 6.500589 ACTCCTAGCTCAAATTATAGGCAA 57.499 37.500 0.00 0.00 35.71 4.52
147 148 7.084268 ACTCCTAGCTCAAATTATAGGCAAT 57.916 36.000 0.00 0.00 35.71 3.56
148 149 7.164803 ACTCCTAGCTCAAATTATAGGCAATC 58.835 38.462 0.00 0.00 35.71 2.67
149 150 7.017056 ACTCCTAGCTCAAATTATAGGCAATCT 59.983 37.037 0.00 0.00 35.71 2.40
150 151 8.435931 TCCTAGCTCAAATTATAGGCAATCTA 57.564 34.615 0.00 0.00 35.71 1.98
151 152 8.535335 TCCTAGCTCAAATTATAGGCAATCTAG 58.465 37.037 0.00 0.00 35.71 2.43
152 153 8.317679 CCTAGCTCAAATTATAGGCAATCTAGT 58.682 37.037 0.00 0.00 0.00 2.57
153 154 7.976135 AGCTCAAATTATAGGCAATCTAGTG 57.024 36.000 0.00 0.00 0.00 2.74
154 155 7.739825 AGCTCAAATTATAGGCAATCTAGTGA 58.260 34.615 0.00 0.00 0.00 3.41
155 156 8.381636 AGCTCAAATTATAGGCAATCTAGTGAT 58.618 33.333 0.00 0.00 33.70 3.06
156 157 9.007901 GCTCAAATTATAGGCAATCTAGTGATT 57.992 33.333 0.00 0.00 43.10 2.57
161 162 7.969536 TTATAGGCAATCTAGTGATTTGAGC 57.030 36.000 0.00 0.00 40.61 4.26
162 163 4.226427 AGGCAATCTAGTGATTTGAGCA 57.774 40.909 0.00 0.00 40.61 4.26
163 164 4.592942 AGGCAATCTAGTGATTTGAGCAA 58.407 39.130 0.00 0.00 40.61 3.91
164 165 5.012239 AGGCAATCTAGTGATTTGAGCAAA 58.988 37.500 0.00 0.00 40.61 3.68
165 166 5.655532 AGGCAATCTAGTGATTTGAGCAAAT 59.344 36.000 8.09 8.09 40.61 2.32
166 167 6.154021 AGGCAATCTAGTGATTTGAGCAAATT 59.846 34.615 9.57 0.00 40.61 1.82
167 168 6.474751 GGCAATCTAGTGATTTGAGCAAATTC 59.525 38.462 9.57 6.85 40.61 2.17
168 169 7.031372 GCAATCTAGTGATTTGAGCAAATTCA 58.969 34.615 9.57 6.86 40.61 2.57
169 170 7.705325 GCAATCTAGTGATTTGAGCAAATTCAT 59.295 33.333 9.57 2.58 40.61 2.57
170 171 9.020813 CAATCTAGTGATTTGAGCAAATTCATG 57.979 33.333 9.57 0.00 40.61 3.07
171 172 7.926674 TCTAGTGATTTGAGCAAATTCATGA 57.073 32.000 9.57 0.00 40.77 3.07
172 173 8.339344 TCTAGTGATTTGAGCAAATTCATGAA 57.661 30.769 11.26 11.26 40.77 2.57
173 174 8.795513 TCTAGTGATTTGAGCAAATTCATGAAA 58.204 29.630 13.09 0.00 40.77 2.69
174 175 9.414295 CTAGTGATTTGAGCAAATTCATGAAAA 57.586 29.630 13.09 0.00 40.77 2.29
175 176 8.842358 AGTGATTTGAGCAAATTCATGAAAAT 57.158 26.923 13.09 4.87 40.77 1.82
176 177 9.280174 AGTGATTTGAGCAAATTCATGAAAATT 57.720 25.926 13.09 8.07 40.77 1.82
177 178 9.537848 GTGATTTGAGCAAATTCATGAAAATTC 57.462 29.630 13.09 6.92 40.77 2.17
178 179 9.274206 TGATTTGAGCAAATTCATGAAAATTCA 57.726 25.926 13.09 9.20 40.77 2.57
256 257 8.911247 ATTTCTAATCTAATGCAAAACGAACC 57.089 30.769 0.00 0.00 0.00 3.62
257 258 7.441890 TTCTAATCTAATGCAAAACGAACCA 57.558 32.000 0.00 0.00 0.00 3.67
258 259 7.441890 TCTAATCTAATGCAAAACGAACCAA 57.558 32.000 0.00 0.00 0.00 3.67
259 260 7.877003 TCTAATCTAATGCAAAACGAACCAAA 58.123 30.769 0.00 0.00 0.00 3.28
260 261 8.519526 TCTAATCTAATGCAAAACGAACCAAAT 58.480 29.630 0.00 0.00 0.00 2.32
261 262 7.961325 AATCTAATGCAAAACGAACCAAATT 57.039 28.000 0.00 0.00 0.00 1.82
263 264 9.482627 AATCTAATGCAAAACGAACCAAATTAA 57.517 25.926 0.00 0.00 0.00 1.40
264 265 8.873215 TCTAATGCAAAACGAACCAAATTAAA 57.127 26.923 0.00 0.00 0.00 1.52
265 266 9.314321 TCTAATGCAAAACGAACCAAATTAAAA 57.686 25.926 0.00 0.00 0.00 1.52
268 269 9.871299 AATGCAAAACGAACCAAATTAAAATAC 57.129 25.926 0.00 0.00 0.00 1.89
276 277 6.376018 CGAACCAAATTAAAATACTCCCTCCA 59.624 38.462 0.00 0.00 0.00 3.86
303 304 7.624360 TTTATATACAAGGCCACAAACTCAG 57.376 36.000 5.01 0.00 0.00 3.35
310 311 4.098914 AGGCCACAAACTCAGATTACAA 57.901 40.909 5.01 0.00 0.00 2.41
319 320 7.441157 CACAAACTCAGATTACAAGTACCAAGA 59.559 37.037 0.00 0.00 0.00 3.02
349 350 9.573133 AATTTAATGTCTTGCTTTCTAAATCCG 57.427 29.630 0.00 0.00 0.00 4.18
355 356 5.920840 GTCTTGCTTTCTAAATCCGCTTTTT 59.079 36.000 0.00 0.00 0.00 1.94
389 391 7.138736 AGTGAAATTATTAATACACCGCATGC 58.861 34.615 7.91 7.91 32.53 4.06
418 420 5.965033 AGAAGGGATAGAAAGCTGATTGA 57.035 39.130 0.00 0.00 0.00 2.57
420 422 6.118852 AGAAGGGATAGAAAGCTGATTGAAC 58.881 40.000 0.00 0.00 0.00 3.18
463 465 8.637099 TGCATGCAAATATTAAATAGGTTGCTA 58.363 29.630 20.30 0.00 39.02 3.49
464 466 9.643693 GCATGCAAATATTAAATAGGTTGCTAT 57.356 29.630 14.21 7.21 39.02 2.97
510 512 4.280436 TGTCTCGATTATTGTTGGTGGT 57.720 40.909 0.00 0.00 0.00 4.16
549 551 6.212888 AGTGTATTTTTCATGATGGCCTTC 57.787 37.500 11.69 11.69 0.00 3.46
565 567 6.187727 TGGCCTTCTATAAGTAAATGGAGG 57.812 41.667 3.32 0.00 0.00 4.30
568 570 6.468543 GCCTTCTATAAGTAAATGGAGGGAG 58.531 44.000 3.10 0.00 36.16 4.30
571 573 8.586744 CCTTCTATAAGTAAATGGAGGGAGTAC 58.413 40.741 0.00 0.00 36.16 2.73
572 574 9.369672 CTTCTATAAGTAAATGGAGGGAGTACT 57.630 37.037 0.00 0.00 0.00 2.73
584 648 8.582891 ATGGAGGGAGTACTAAAAATCCTAAT 57.417 34.615 0.00 0.00 32.18 1.73
586 650 8.272173 TGGAGGGAGTACTAAAAATCCTAATTG 58.728 37.037 0.00 0.00 32.18 2.32
612 676 9.928236 GATATGAATTTTCTGAAACAGTAGAGC 57.072 33.333 1.58 0.00 32.61 4.09
613 677 7.750229 ATGAATTTTCTGAAACAGTAGAGCA 57.250 32.000 1.58 0.00 32.61 4.26
615 679 6.205464 TGAATTTTCTGAAACAGTAGAGCAGG 59.795 38.462 1.58 0.00 32.61 4.85
617 681 3.667497 TCTGAAACAGTAGAGCAGGTG 57.333 47.619 0.00 0.00 32.61 4.00
621 753 2.550830 AACAGTAGAGCAGGTGTTGG 57.449 50.000 0.00 0.00 31.94 3.77
622 754 0.035458 ACAGTAGAGCAGGTGTTGGC 59.965 55.000 0.00 0.00 0.00 4.52
624 756 1.741770 GTAGAGCAGGTGTTGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
626 758 1.476845 TAGAGCAGGTGTTGGCCGAA 61.477 55.000 0.00 0.00 0.00 4.30
648 780 2.062070 GGACTCTCTGGCCAACTGT 58.938 57.895 7.01 3.20 45.54 3.55
650 782 1.517242 GACTCTCTGGCCAACTGTTG 58.483 55.000 7.01 13.50 0.00 3.33
659 791 3.568093 CCAACTGTTGGCCGAAAAG 57.432 52.632 25.21 0.00 45.17 2.27
660 792 0.744281 CCAACTGTTGGCCGAAAAGT 59.256 50.000 25.21 0.00 45.17 2.66
661 793 1.269051 CCAACTGTTGGCCGAAAAGTC 60.269 52.381 25.21 0.00 45.17 3.01
662 794 1.029681 AACTGTTGGCCGAAAAGTCC 58.970 50.000 9.54 0.00 0.00 3.85
663 795 0.822121 ACTGTTGGCCGAAAAGTCCC 60.822 55.000 0.00 0.00 0.00 4.46
664 796 0.537371 CTGTTGGCCGAAAAGTCCCT 60.537 55.000 0.00 0.00 0.00 4.20
665 797 0.536460 TGTTGGCCGAAAAGTCCCTC 60.536 55.000 0.00 0.00 0.00 4.30
666 798 0.250770 GTTGGCCGAAAAGTCCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
669 801 1.019805 GGCCGAAAAGTCCCTCTTCG 61.020 60.000 0.00 0.00 41.18 3.79
671 803 2.457080 CGAAAAGTCCCTCTTCGGC 58.543 57.895 0.00 0.00 38.57 5.54
672 804 1.019805 CGAAAAGTCCCTCTTCGGCC 61.020 60.000 0.00 0.00 38.57 6.13
673 805 0.036306 GAAAAGTCCCTCTTCGGCCA 59.964 55.000 2.24 0.00 35.02 5.36
675 807 0.250770 AAAGTCCCTCTTCGGCCAAC 60.251 55.000 2.24 0.00 35.02 3.77
676 808 2.434359 GTCCCTCTTCGGCCAACG 60.434 66.667 2.24 0.00 46.11 4.10
677 809 3.702048 TCCCTCTTCGGCCAACGG 61.702 66.667 2.24 0.00 44.45 4.44
678 810 4.016706 CCCTCTTCGGCCAACGGT 62.017 66.667 2.24 0.00 44.45 4.83
679 811 2.652095 CCCTCTTCGGCCAACGGTA 61.652 63.158 2.24 0.00 44.45 4.02
680 812 1.153628 CCTCTTCGGCCAACGGTAG 60.154 63.158 2.24 0.00 44.45 3.18
681 813 1.153628 CTCTTCGGCCAACGGTAGG 60.154 63.158 2.24 0.00 44.45 3.18
694 826 1.988817 GGTAGGCCGAAAAGTCCCT 59.011 57.895 0.00 0.00 0.00 4.20
695 827 0.107800 GGTAGGCCGAAAAGTCCCTC 60.108 60.000 0.00 0.00 0.00 4.30
696 828 0.107800 GTAGGCCGAAAAGTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
698 830 1.078356 GGCCGAAAAGTCCCTCCTC 60.078 63.158 0.00 0.00 0.00 3.71
699 831 1.448013 GCCGAAAAGTCCCTCCTCG 60.448 63.158 0.00 0.00 0.00 4.63
701 833 1.448013 CGAAAAGTCCCTCCTCGGC 60.448 63.158 0.00 0.00 0.00 5.54
702 834 1.078356 GAAAAGTCCCTCCTCGGCC 60.078 63.158 0.00 0.00 0.00 6.13
703 835 1.838073 GAAAAGTCCCTCCTCGGCCA 61.838 60.000 2.24 0.00 0.00 5.36
706 838 3.319198 GTCCCTCCTCGGCCAACA 61.319 66.667 2.24 0.00 0.00 3.33
708 840 4.101448 CCCTCCTCGGCCAACAGG 62.101 72.222 2.24 4.59 0.00 4.00
709 841 3.003173 CCTCCTCGGCCAACAGGA 61.003 66.667 13.29 13.29 37.27 3.86
711 843 3.003173 TCCTCGGCCAACAGGAGG 61.003 66.667 15.53 15.53 46.99 4.30
718 850 2.046892 CCAACAGGAGGCCGACAG 60.047 66.667 0.00 0.00 0.00 3.51
719 851 2.046892 CAACAGGAGGCCGACAGG 60.047 66.667 0.00 0.00 41.62 4.00
720 852 2.203788 AACAGGAGGCCGACAGGA 60.204 61.111 0.00 0.00 41.02 3.86
721 853 1.613630 AACAGGAGGCCGACAGGAT 60.614 57.895 0.00 0.00 41.02 3.24
724 856 1.074926 AGGAGGCCGACAGGATGAT 60.075 57.895 0.00 0.00 39.69 2.45
725 857 0.188587 AGGAGGCCGACAGGATGATA 59.811 55.000 0.00 0.00 39.69 2.15
726 858 0.318762 GGAGGCCGACAGGATGATAC 59.681 60.000 0.00 0.00 39.69 2.24
729 908 2.103263 GAGGCCGACAGGATGATACTTT 59.897 50.000 0.00 0.00 39.69 2.66
732 911 3.531538 GCCGACAGGATGATACTTTTGA 58.468 45.455 0.00 0.00 39.69 2.69
736 915 6.404734 GCCGACAGGATGATACTTTTGATTTT 60.405 38.462 0.00 0.00 39.69 1.82
761 940 6.882610 TTTGCATTATGGACAGGATGATAC 57.117 37.500 0.00 0.00 39.69 2.24
762 941 5.830799 TGCATTATGGACAGGATGATACT 57.169 39.130 0.00 0.00 39.69 2.12
764 943 6.604171 TGCATTATGGACAGGATGATACTTT 58.396 36.000 0.00 0.00 39.69 2.66
765 944 7.062322 TGCATTATGGACAGGATGATACTTTT 58.938 34.615 0.00 0.00 39.69 2.27
766 945 7.013559 TGCATTATGGACAGGATGATACTTTTG 59.986 37.037 0.00 0.00 39.69 2.44
767 946 7.229306 GCATTATGGACAGGATGATACTTTTGA 59.771 37.037 0.00 0.00 39.69 2.69
768 947 9.293404 CATTATGGACAGGATGATACTTTTGAT 57.707 33.333 0.00 0.00 39.69 2.57
769 948 9.872684 ATTATGGACAGGATGATACTTTTGATT 57.127 29.630 0.00 0.00 39.69 2.57
771 950 8.599624 ATGGACAGGATGATACTTTTGATTTT 57.400 30.769 0.00 0.00 39.69 1.82
796 975 6.612247 TTGCATTATGGTGTATAGTTTCCG 57.388 37.500 0.00 0.00 0.00 4.30
800 979 7.500892 TGCATTATGGTGTATAGTTTCCGAAAT 59.499 33.333 0.00 0.00 0.00 2.17
802 981 9.663904 CATTATGGTGTATAGTTTCCGAAATTG 57.336 33.333 0.00 0.00 0.00 2.32
803 982 5.554822 TGGTGTATAGTTTCCGAAATTGC 57.445 39.130 0.00 0.00 0.00 3.56
805 984 6.408035 TGGTGTATAGTTTCCGAAATTGCTA 58.592 36.000 0.00 0.00 0.00 3.49
806 985 7.051623 TGGTGTATAGTTTCCGAAATTGCTAT 58.948 34.615 0.00 2.94 0.00 2.97
807 986 8.205512 TGGTGTATAGTTTCCGAAATTGCTATA 58.794 33.333 0.00 2.07 0.00 1.31
808 987 9.048446 GGTGTATAGTTTCCGAAATTGCTATAA 57.952 33.333 9.58 2.44 0.00 0.98
886 1351 2.153366 AAGGCGCCAACTTCATTTTG 57.847 45.000 31.54 0.00 0.00 2.44
989 1470 2.574399 GTCCCAGACCGTCTCTGC 59.426 66.667 0.00 0.00 44.80 4.26
1011 1492 0.835276 CTCACCTCATGGCCAGATCA 59.165 55.000 13.05 0.00 36.63 2.92
1012 1493 0.543277 TCACCTCATGGCCAGATCAC 59.457 55.000 13.05 0.00 36.63 3.06
1556 2418 4.776532 CACTCGTTTCGATCGAATGTTTTC 59.223 41.667 29.53 14.75 36.89 2.29
1585 2447 2.552315 TCCATTTTCTTGCGTTGAGGTC 59.448 45.455 0.00 0.00 0.00 3.85
1591 2453 2.755650 TCTTGCGTTGAGGTCTCTTTC 58.244 47.619 0.00 0.00 0.00 2.62
1610 2472 2.743752 CCGAATCAGCACAGCACCG 61.744 63.158 0.00 0.00 0.00 4.94
1613 2475 1.639298 GAATCAGCACAGCACCGTCC 61.639 60.000 0.00 0.00 0.00 4.79
1617 2480 2.904866 GCACAGCACCGTCCCAAA 60.905 61.111 0.00 0.00 0.00 3.28
1625 2488 1.272212 GCACCGTCCCAAATGACATTT 59.728 47.619 7.62 7.62 34.88 2.32
1646 2509 1.610379 AGCCAATGCAAAGGACCCC 60.610 57.895 11.63 0.00 41.13 4.95
1647 2510 1.912763 GCCAATGCAAAGGACCCCA 60.913 57.895 11.63 0.00 37.47 4.96
1648 2511 1.479368 GCCAATGCAAAGGACCCCAA 61.479 55.000 11.63 0.00 37.47 4.12
1690 2553 4.638421 CCGTATGGCAATTTCTCTGGTAAA 59.362 41.667 0.00 0.00 0.00 2.01
1691 2554 5.124776 CCGTATGGCAATTTCTCTGGTAAAA 59.875 40.000 0.00 0.00 0.00 1.52
1697 2560 8.825667 TGGCAATTTCTCTGGTAAAATTTTAC 57.174 30.769 26.22 26.22 41.68 2.01
1709 2572 7.598278 TGGTAAAATTTTACACTACATGGCAG 58.402 34.615 31.79 0.00 43.64 4.85
1729 2621 8.563289 TGGCAGTTTTTACTTTAAAACATACG 57.437 30.769 12.73 0.00 45.81 3.06
1730 2622 7.648510 TGGCAGTTTTTACTTTAAAACATACGG 59.351 33.333 12.73 1.57 45.81 4.02
1766 2658 6.759827 ACAAGCATGGCAATTTCATCTATTTC 59.240 34.615 0.00 0.00 0.00 2.17
1774 2666 6.154445 GCAATTTCATCTATTTCCGCATGAT 58.846 36.000 0.00 0.00 0.00 2.45
1777 2669 9.681692 CAATTTCATCTATTTCCGCATGATAAA 57.318 29.630 0.00 0.00 0.00 1.40
1788 2680 3.249320 CCGCATGATAAATCTGGTCACTG 59.751 47.826 0.00 0.00 0.00 3.66
1814 2706 9.673454 GGATTTTTAGTGTTCAAAATCTAACGT 57.327 29.630 14.05 0.00 44.03 3.99
1823 2715 4.965062 TCAAAATCTAACGTCGGATTTGC 58.035 39.130 21.23 0.00 40.58 3.68
1838 2730 4.150451 CGGATTTGCAACATTTCCTGAAAC 59.850 41.667 0.00 0.00 32.51 2.78
1851 2743 1.877443 CCTGAAACCAACAGTAACGGG 59.123 52.381 0.00 0.00 34.04 5.28
1884 2776 5.200483 TGCAGGGGATATTTACAAAAGGAG 58.800 41.667 0.00 0.00 0.00 3.69
1890 4167 9.035890 AGGGGATATTTACAAAAGGAGAAAAAG 57.964 33.333 0.00 0.00 0.00 2.27
1892 4169 9.856488 GGGATATTTACAAAAGGAGAAAAAGAC 57.144 33.333 0.00 0.00 0.00 3.01
1950 4973 4.736896 GACCGGTGCGTGGACTCC 62.737 72.222 14.63 0.00 0.00 3.85
2010 5087 4.092968 GCGTTTTCTCCTACTACCAACATG 59.907 45.833 0.00 0.00 0.00 3.21
2051 5129 1.450312 GAAGTGCCCTCCCATCGTG 60.450 63.158 0.00 0.00 0.00 4.35
2052 5130 2.876368 GAAGTGCCCTCCCATCGTGG 62.876 65.000 0.00 0.00 37.25 4.94
2053 5131 3.717294 GTGCCCTCCCATCGTGGT 61.717 66.667 3.82 0.00 35.17 4.16
2073 5151 0.108585 GGTGGTGTCCAAAGCTGAGA 59.891 55.000 0.00 0.00 34.18 3.27
2136 5446 0.541863 GGAAGGCAGCTTACTAGGCA 59.458 55.000 0.00 0.00 0.00 4.75
2140 5450 1.087501 GGCAGCTTACTAGGCAACAC 58.912 55.000 0.00 0.00 41.41 3.32
2187 5499 1.469703 CGCATTGTTCTCAGCCAATGA 59.530 47.619 16.75 0.00 46.93 2.57
2212 5524 1.673033 GCTGTACTGATTGACCACGCT 60.673 52.381 3.61 0.00 0.00 5.07
2213 5525 2.416836 GCTGTACTGATTGACCACGCTA 60.417 50.000 3.61 0.00 0.00 4.26
2214 5526 3.845178 CTGTACTGATTGACCACGCTAA 58.155 45.455 0.00 0.00 0.00 3.09
2215 5527 4.242475 CTGTACTGATTGACCACGCTAAA 58.758 43.478 0.00 0.00 0.00 1.85
2216 5528 4.242475 TGTACTGATTGACCACGCTAAAG 58.758 43.478 0.00 0.00 0.00 1.85
2217 5529 2.076863 ACTGATTGACCACGCTAAAGC 58.923 47.619 0.00 0.00 37.78 3.51
2218 5530 1.398390 CTGATTGACCACGCTAAAGCC 59.602 52.381 0.00 0.00 37.91 4.35
2219 5531 1.271108 TGATTGACCACGCTAAAGCCA 60.271 47.619 0.00 0.00 37.91 4.75
2220 5532 1.810151 GATTGACCACGCTAAAGCCAA 59.190 47.619 0.00 0.00 37.91 4.52
2221 5533 1.904287 TTGACCACGCTAAAGCCAAT 58.096 45.000 0.00 0.00 37.91 3.16
2222 5534 1.164411 TGACCACGCTAAAGCCAATG 58.836 50.000 0.00 0.00 37.91 2.82
2223 5535 1.271108 TGACCACGCTAAAGCCAATGA 60.271 47.619 0.00 0.00 37.91 2.57
2224 5536 1.130561 GACCACGCTAAAGCCAATGAC 59.869 52.381 0.00 0.00 37.91 3.06
2225 5537 1.164411 CCACGCTAAAGCCAATGACA 58.836 50.000 0.00 0.00 37.91 3.58
2226 5538 1.135689 CCACGCTAAAGCCAATGACAC 60.136 52.381 0.00 0.00 37.91 3.67
2227 5539 1.535028 CACGCTAAAGCCAATGACACA 59.465 47.619 0.00 0.00 37.91 3.72
2228 5540 1.806542 ACGCTAAAGCCAATGACACAG 59.193 47.619 0.00 0.00 37.91 3.66
2229 5541 1.466360 CGCTAAAGCCAATGACACAGC 60.466 52.381 0.00 0.00 37.91 4.40
2230 5542 1.815003 GCTAAAGCCAATGACACAGCT 59.185 47.619 0.00 0.00 37.10 4.24
2231 5543 2.415090 GCTAAAGCCAATGACACAGCTG 60.415 50.000 13.48 13.48 35.30 4.24
2232 5544 1.696063 AAAGCCAATGACACAGCTGT 58.304 45.000 15.25 15.25 35.30 4.40
2233 5545 2.566833 AAGCCAATGACACAGCTGTA 57.433 45.000 21.20 4.30 35.30 2.74
2234 5546 1.813513 AGCCAATGACACAGCTGTAC 58.186 50.000 21.20 16.78 33.41 2.90
2235 5547 1.349026 AGCCAATGACACAGCTGTACT 59.651 47.619 21.20 7.57 33.41 2.73
2246 5558 2.370281 AGCTGTACTGATTGACCACG 57.630 50.000 3.61 0.00 0.00 4.94
2247 5559 0.721718 GCTGTACTGATTGACCACGC 59.278 55.000 3.61 0.00 0.00 5.34
2288 5600 2.609737 GGAAGATTCTCAACGGACGTGT 60.610 50.000 0.00 0.00 0.00 4.49
2309 5621 3.062099 GTCATGCTGCTTTGCAATCAATG 59.938 43.478 0.00 4.08 46.61 2.82
2310 5622 2.087501 TGCTGCTTTGCAATCAATGG 57.912 45.000 0.00 0.00 40.29 3.16
2311 5623 1.619332 TGCTGCTTTGCAATCAATGGA 59.381 42.857 0.00 0.00 40.29 3.41
2312 5624 1.997606 GCTGCTTTGCAATCAATGGAC 59.002 47.619 0.00 0.00 38.41 4.02
2313 5625 2.256174 CTGCTTTGCAATCAATGGACG 58.744 47.619 0.00 0.00 38.41 4.79
2314 5626 0.994263 GCTTTGCAATCAATGGACGC 59.006 50.000 0.00 0.00 31.33 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.770828 GCTTATCAGTAGTAATTAATTGGCGAA 58.229 33.333 11.05 0.00 0.00 4.70
53 54 7.929245 TGCTTATCAGTAGTAATTAATTGGCGA 59.071 33.333 11.05 0.00 0.00 5.54
54 55 8.083462 TGCTTATCAGTAGTAATTAATTGGCG 57.917 34.615 11.05 0.00 0.00 5.69
65 66 9.719355 TCTTTGTGAATTTGCTTATCAGTAGTA 57.281 29.630 0.00 0.00 0.00 1.82
66 67 8.621532 TCTTTGTGAATTTGCTTATCAGTAGT 57.378 30.769 0.00 0.00 0.00 2.73
67 68 9.334693 GTTCTTTGTGAATTTGCTTATCAGTAG 57.665 33.333 0.00 0.00 36.99 2.57
68 69 8.296713 GGTTCTTTGTGAATTTGCTTATCAGTA 58.703 33.333 0.00 0.00 36.99 2.74
69 70 7.147976 GGTTCTTTGTGAATTTGCTTATCAGT 58.852 34.615 0.00 0.00 36.99 3.41
70 71 7.147312 TGGTTCTTTGTGAATTTGCTTATCAG 58.853 34.615 0.00 0.00 36.99 2.90
71 72 7.048629 TGGTTCTTTGTGAATTTGCTTATCA 57.951 32.000 0.00 0.00 36.99 2.15
72 73 7.147976 ACTGGTTCTTTGTGAATTTGCTTATC 58.852 34.615 0.00 0.00 36.99 1.75
73 74 7.054491 ACTGGTTCTTTGTGAATTTGCTTAT 57.946 32.000 0.00 0.00 36.99 1.73
74 75 6.463995 ACTGGTTCTTTGTGAATTTGCTTA 57.536 33.333 0.00 0.00 36.99 3.09
75 76 5.343307 ACTGGTTCTTTGTGAATTTGCTT 57.657 34.783 0.00 0.00 36.99 3.91
76 77 5.507985 GCTACTGGTTCTTTGTGAATTTGCT 60.508 40.000 0.00 0.00 36.99 3.91
77 78 4.681483 GCTACTGGTTCTTTGTGAATTTGC 59.319 41.667 0.00 0.00 36.99 3.68
78 79 5.830912 TGCTACTGGTTCTTTGTGAATTTG 58.169 37.500 0.00 0.00 36.99 2.32
79 80 6.463995 TTGCTACTGGTTCTTTGTGAATTT 57.536 33.333 0.00 0.00 36.99 1.82
80 81 6.463995 TTTGCTACTGGTTCTTTGTGAATT 57.536 33.333 0.00 0.00 36.99 2.17
81 82 6.463995 TTTTGCTACTGGTTCTTTGTGAAT 57.536 33.333 0.00 0.00 36.99 2.57
82 83 5.906113 TTTTGCTACTGGTTCTTTGTGAA 57.094 34.783 0.00 0.00 0.00 3.18
83 84 5.650266 TCTTTTTGCTACTGGTTCTTTGTGA 59.350 36.000 0.00 0.00 0.00 3.58
84 85 5.890334 TCTTTTTGCTACTGGTTCTTTGTG 58.110 37.500 0.00 0.00 0.00 3.33
85 86 6.524101 TTCTTTTTGCTACTGGTTCTTTGT 57.476 33.333 0.00 0.00 0.00 2.83
86 87 7.202526 TGATTCTTTTTGCTACTGGTTCTTTG 58.797 34.615 0.00 0.00 0.00 2.77
87 88 7.346751 TGATTCTTTTTGCTACTGGTTCTTT 57.653 32.000 0.00 0.00 0.00 2.52
88 89 6.959639 TGATTCTTTTTGCTACTGGTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
89 90 6.944862 AGATGATTCTTTTTGCTACTGGTTCT 59.055 34.615 0.00 0.00 0.00 3.01
90 91 7.025963 CAGATGATTCTTTTTGCTACTGGTTC 58.974 38.462 0.00 0.00 0.00 3.62
91 92 6.716628 TCAGATGATTCTTTTTGCTACTGGTT 59.283 34.615 0.00 0.00 0.00 3.67
92 93 6.240894 TCAGATGATTCTTTTTGCTACTGGT 58.759 36.000 0.00 0.00 0.00 4.00
93 94 6.748333 TCAGATGATTCTTTTTGCTACTGG 57.252 37.500 0.00 0.00 0.00 4.00
94 95 9.467258 TTTTTCAGATGATTCTTTTTGCTACTG 57.533 29.630 0.00 0.00 0.00 2.74
118 119 9.508642 GCCTATAATTTGAGCTAGGAGTATTTT 57.491 33.333 0.00 0.00 33.93 1.82
119 120 8.660435 TGCCTATAATTTGAGCTAGGAGTATTT 58.340 33.333 0.00 0.00 33.93 1.40
120 121 8.207350 TGCCTATAATTTGAGCTAGGAGTATT 57.793 34.615 0.00 0.00 33.93 1.89
121 122 7.798710 TGCCTATAATTTGAGCTAGGAGTAT 57.201 36.000 0.00 0.00 33.93 2.12
122 123 7.612065 TTGCCTATAATTTGAGCTAGGAGTA 57.388 36.000 0.00 0.00 33.93 2.59
123 124 6.500589 TTGCCTATAATTTGAGCTAGGAGT 57.499 37.500 0.00 0.00 33.93 3.85
124 125 7.393216 AGATTGCCTATAATTTGAGCTAGGAG 58.607 38.462 0.00 0.00 33.93 3.69
125 126 7.321717 AGATTGCCTATAATTTGAGCTAGGA 57.678 36.000 0.00 0.00 33.93 2.94
126 127 8.317679 ACTAGATTGCCTATAATTTGAGCTAGG 58.682 37.037 0.00 0.00 34.97 3.02
127 128 9.149225 CACTAGATTGCCTATAATTTGAGCTAG 57.851 37.037 0.00 0.00 0.00 3.42
128 129 8.870116 TCACTAGATTGCCTATAATTTGAGCTA 58.130 33.333 0.00 0.00 0.00 3.32
129 130 7.739825 TCACTAGATTGCCTATAATTTGAGCT 58.260 34.615 0.00 0.00 0.00 4.09
130 131 7.969536 TCACTAGATTGCCTATAATTTGAGC 57.030 36.000 0.00 0.00 0.00 4.26
135 136 9.007901 GCTCAAATCACTAGATTGCCTATAATT 57.992 33.333 0.00 0.00 43.52 1.40
136 137 8.159447 TGCTCAAATCACTAGATTGCCTATAAT 58.841 33.333 0.00 0.00 43.52 1.28
137 138 7.508687 TGCTCAAATCACTAGATTGCCTATAA 58.491 34.615 0.00 0.00 43.52 0.98
138 139 7.066307 TGCTCAAATCACTAGATTGCCTATA 57.934 36.000 0.00 0.00 43.52 1.31
139 140 5.933617 TGCTCAAATCACTAGATTGCCTAT 58.066 37.500 0.00 0.00 43.52 2.57
140 141 5.357742 TGCTCAAATCACTAGATTGCCTA 57.642 39.130 0.00 0.00 43.52 3.93
141 142 4.226427 TGCTCAAATCACTAGATTGCCT 57.774 40.909 0.00 0.00 43.52 4.75
142 143 4.970662 TTGCTCAAATCACTAGATTGCC 57.029 40.909 0.00 0.00 43.52 4.52
143 144 7.031372 TGAATTTGCTCAAATCACTAGATTGC 58.969 34.615 8.14 0.00 43.52 3.56
144 145 9.020813 CATGAATTTGCTCAAATCACTAGATTG 57.979 33.333 8.14 0.00 43.52 2.67
145 146 8.963725 TCATGAATTTGCTCAAATCACTAGATT 58.036 29.630 8.14 0.00 46.20 2.40
146 147 8.515695 TCATGAATTTGCTCAAATCACTAGAT 57.484 30.769 8.14 0.00 39.88 1.98
147 148 7.926674 TCATGAATTTGCTCAAATCACTAGA 57.073 32.000 8.14 2.25 39.88 2.43
148 149 8.975410 TTTCATGAATTTGCTCAAATCACTAG 57.025 30.769 9.40 0.00 39.88 2.57
149 150 9.932207 ATTTTCATGAATTTGCTCAAATCACTA 57.068 25.926 9.40 0.00 39.88 2.74
150 151 8.842358 ATTTTCATGAATTTGCTCAAATCACT 57.158 26.923 9.40 0.00 39.88 3.41
151 152 9.537848 GAATTTTCATGAATTTGCTCAAATCAC 57.462 29.630 9.40 6.84 39.88 3.06
152 153 9.274206 TGAATTTTCATGAATTTGCTCAAATCA 57.726 25.926 9.40 4.87 34.69 2.57
230 231 9.353999 GGTTCGTTTTGCATTAGATTAGAAATT 57.646 29.630 0.00 0.00 0.00 1.82
231 232 8.519526 TGGTTCGTTTTGCATTAGATTAGAAAT 58.480 29.630 0.00 0.00 0.00 2.17
232 233 7.877003 TGGTTCGTTTTGCATTAGATTAGAAA 58.123 30.769 0.00 0.00 0.00 2.52
233 234 7.441890 TGGTTCGTTTTGCATTAGATTAGAA 57.558 32.000 0.00 0.00 0.00 2.10
234 235 7.441890 TTGGTTCGTTTTGCATTAGATTAGA 57.558 32.000 0.00 0.00 0.00 2.10
235 236 8.687824 ATTTGGTTCGTTTTGCATTAGATTAG 57.312 30.769 0.00 0.00 0.00 1.73
237 238 7.961325 AATTTGGTTCGTTTTGCATTAGATT 57.039 28.000 0.00 0.00 0.00 2.40
238 239 9.482627 TTTAATTTGGTTCGTTTTGCATTAGAT 57.517 25.926 0.00 0.00 0.00 1.98
239 240 8.873215 TTTAATTTGGTTCGTTTTGCATTAGA 57.127 26.923 0.00 0.00 0.00 2.10
242 243 9.871299 GTATTTTAATTTGGTTCGTTTTGCATT 57.129 25.926 0.00 0.00 0.00 3.56
243 244 9.267084 AGTATTTTAATTTGGTTCGTTTTGCAT 57.733 25.926 0.00 0.00 0.00 3.96
244 245 8.649973 AGTATTTTAATTTGGTTCGTTTTGCA 57.350 26.923 0.00 0.00 0.00 4.08
245 246 8.218441 GGAGTATTTTAATTTGGTTCGTTTTGC 58.782 33.333 0.00 0.00 0.00 3.68
246 247 8.705134 GGGAGTATTTTAATTTGGTTCGTTTTG 58.295 33.333 0.00 0.00 0.00 2.44
247 248 8.644216 AGGGAGTATTTTAATTTGGTTCGTTTT 58.356 29.630 0.00 0.00 0.00 2.43
248 249 8.185506 AGGGAGTATTTTAATTTGGTTCGTTT 57.814 30.769 0.00 0.00 0.00 3.60
249 250 7.094075 GGAGGGAGTATTTTAATTTGGTTCGTT 60.094 37.037 0.00 0.00 0.00 3.85
250 251 6.376299 GGAGGGAGTATTTTAATTTGGTTCGT 59.624 38.462 0.00 0.00 0.00 3.85
251 252 6.376018 TGGAGGGAGTATTTTAATTTGGTTCG 59.624 38.462 0.00 0.00 0.00 3.95
252 253 7.712204 TGGAGGGAGTATTTTAATTTGGTTC 57.288 36.000 0.00 0.00 0.00 3.62
253 254 8.679344 AATGGAGGGAGTATTTTAATTTGGTT 57.321 30.769 0.00 0.00 0.00 3.67
254 255 8.679344 AAATGGAGGGAGTATTTTAATTTGGT 57.321 30.769 0.00 0.00 0.00 3.67
255 256 9.958180 AAAAATGGAGGGAGTATTTTAATTTGG 57.042 29.630 0.00 0.00 34.07 3.28
268 269 6.434340 GGCCTTGTATATAAAAATGGAGGGAG 59.566 42.308 0.00 0.00 0.00 4.30
276 277 9.030452 TGAGTTTGTGGCCTTGTATATAAAAAT 57.970 29.630 3.32 0.00 0.00 1.82
331 332 4.686839 AAGCGGATTTAGAAAGCAAGAC 57.313 40.909 0.00 0.00 0.00 3.01
368 370 6.365789 GCATGCATGCGGTGTATTAATAATTT 59.634 34.615 33.99 0.00 44.67 1.82
369 371 5.863397 GCATGCATGCGGTGTATTAATAATT 59.137 36.000 33.99 0.00 44.67 1.40
372 374 4.418013 GCATGCATGCGGTGTATTAATA 57.582 40.909 33.99 0.00 44.67 0.98
389 391 4.643784 AGCTTTCTATCCCTTCTTTGCATG 59.356 41.667 0.00 0.00 0.00 4.06
396 398 5.965033 TCAATCAGCTTTCTATCCCTTCT 57.035 39.130 0.00 0.00 0.00 2.85
404 406 8.886719 CATAATGACAGTTCAATCAGCTTTCTA 58.113 33.333 0.00 0.00 34.61 2.10
495 497 8.958119 TCTATACAAGACCACCAACAATAATC 57.042 34.615 0.00 0.00 0.00 1.75
500 502 4.941263 GCATCTATACAAGACCACCAACAA 59.059 41.667 0.00 0.00 36.93 2.83
504 506 4.835284 TTGCATCTATACAAGACCACCA 57.165 40.909 0.00 0.00 36.93 4.17
540 542 6.881602 CCTCCATTTACTTATAGAAGGCCATC 59.118 42.308 5.01 1.19 36.95 3.51
541 543 6.240292 CCCTCCATTTACTTATAGAAGGCCAT 60.240 42.308 5.01 0.00 36.95 4.40
586 650 9.928236 GCTCTACTGTTTCAGAAAATTCATATC 57.072 33.333 0.00 0.00 35.18 1.63
590 654 6.205464 CCTGCTCTACTGTTTCAGAAAATTCA 59.795 38.462 0.00 0.00 35.18 2.57
593 657 5.471456 CACCTGCTCTACTGTTTCAGAAAAT 59.529 40.000 0.00 0.00 35.18 1.82
594 658 4.816385 CACCTGCTCTACTGTTTCAGAAAA 59.184 41.667 0.00 0.00 35.18 2.29
598 662 3.393089 ACACCTGCTCTACTGTTTCAG 57.607 47.619 0.00 0.00 37.52 3.02
599 663 3.466836 CAACACCTGCTCTACTGTTTCA 58.533 45.455 0.00 0.00 0.00 2.69
600 664 2.808543 CCAACACCTGCTCTACTGTTTC 59.191 50.000 0.00 0.00 0.00 2.78
601 665 2.851195 CCAACACCTGCTCTACTGTTT 58.149 47.619 0.00 0.00 0.00 2.83
603 667 0.035458 GCCAACACCTGCTCTACTGT 59.965 55.000 0.00 0.00 0.00 3.55
604 668 0.674895 GGCCAACACCTGCTCTACTG 60.675 60.000 0.00 0.00 0.00 2.74
605 669 1.679898 GGCCAACACCTGCTCTACT 59.320 57.895 0.00 0.00 0.00 2.57
606 670 1.741770 CGGCCAACACCTGCTCTAC 60.742 63.158 2.24 0.00 0.00 2.59
607 671 1.476845 TTCGGCCAACACCTGCTCTA 61.477 55.000 2.24 0.00 0.00 2.43
608 672 2.738213 CTTCGGCCAACACCTGCTCT 62.738 60.000 2.24 0.00 0.00 4.09
609 673 2.281484 TTCGGCCAACACCTGCTC 60.281 61.111 2.24 0.00 0.00 4.26
610 674 2.281761 CTTCGGCCAACACCTGCT 60.282 61.111 2.24 0.00 0.00 4.24
611 675 2.281484 TCTTCGGCCAACACCTGC 60.281 61.111 2.24 0.00 0.00 4.85
612 676 1.672356 CCTCTTCGGCCAACACCTG 60.672 63.158 2.24 0.00 0.00 4.00
613 677 2.750350 CCTCTTCGGCCAACACCT 59.250 61.111 2.24 0.00 0.00 4.00
615 679 1.671379 GTCCCTCTTCGGCCAACAC 60.671 63.158 2.24 0.00 0.00 3.32
617 681 1.079057 GAGTCCCTCTTCGGCCAAC 60.079 63.158 2.24 0.00 0.00 3.77
642 774 1.269051 GGACTTTTCGGCCAACAGTTG 60.269 52.381 2.24 6.28 0.00 3.16
643 775 1.029681 GGACTTTTCGGCCAACAGTT 58.970 50.000 2.24 0.00 0.00 3.16
644 776 0.822121 GGGACTTTTCGGCCAACAGT 60.822 55.000 2.24 4.99 0.00 3.55
645 777 0.537371 AGGGACTTTTCGGCCAACAG 60.537 55.000 2.24 1.51 27.25 3.16
646 778 0.536460 GAGGGACTTTTCGGCCAACA 60.536 55.000 2.24 0.00 41.55 3.33
647 779 0.250770 AGAGGGACTTTTCGGCCAAC 60.251 55.000 2.24 0.00 41.55 3.77
648 780 0.476771 AAGAGGGACTTTTCGGCCAA 59.523 50.000 2.24 0.00 41.55 4.52
650 782 2.855887 GAAGAGGGACTTTTCGGCC 58.144 57.895 0.00 0.00 39.71 6.13
654 786 0.036306 TGGCCGAAGAGGGACTTTTC 59.964 55.000 0.00 0.00 44.82 2.29
655 787 0.476771 TTGGCCGAAGAGGGACTTTT 59.523 50.000 0.00 0.00 41.55 2.27
656 788 0.250770 GTTGGCCGAAGAGGGACTTT 60.251 55.000 0.00 0.00 41.55 2.66
657 789 1.375326 GTTGGCCGAAGAGGGACTT 59.625 57.895 0.00 0.00 41.55 3.01
658 790 2.943978 CGTTGGCCGAAGAGGGACT 61.944 63.158 0.00 0.00 40.27 3.85
659 791 2.434359 CGTTGGCCGAAGAGGGAC 60.434 66.667 0.00 0.00 41.48 4.46
660 792 3.702048 CCGTTGGCCGAAGAGGGA 61.702 66.667 7.61 0.00 41.48 4.20
661 793 2.573609 CTACCGTTGGCCGAAGAGGG 62.574 65.000 7.61 6.47 41.48 4.30
662 794 1.153628 CTACCGTTGGCCGAAGAGG 60.154 63.158 7.61 8.10 44.97 3.69
663 795 1.153628 CCTACCGTTGGCCGAAGAG 60.154 63.158 7.61 0.35 39.56 2.85
664 796 2.975536 CCTACCGTTGGCCGAAGA 59.024 61.111 7.61 0.00 39.56 2.87
665 797 2.818274 GCCTACCGTTGGCCGAAG 60.818 66.667 12.50 0.00 44.32 3.79
676 808 0.107800 GAGGGACTTTTCGGCCTACC 60.108 60.000 0.00 0.00 41.55 3.18
677 809 0.107800 GGAGGGACTTTTCGGCCTAC 60.108 60.000 0.00 0.00 41.55 3.18
678 810 0.252558 AGGAGGGACTTTTCGGCCTA 60.253 55.000 0.00 0.00 41.55 3.93
679 811 1.539124 AGGAGGGACTTTTCGGCCT 60.539 57.895 0.00 0.00 41.55 5.19
680 812 1.078356 GAGGAGGGACTTTTCGGCC 60.078 63.158 0.00 0.00 41.55 6.13
681 813 1.448013 CGAGGAGGGACTTTTCGGC 60.448 63.158 0.00 0.00 41.55 5.54
682 814 4.913126 CGAGGAGGGACTTTTCGG 57.087 61.111 0.00 0.00 41.55 4.30
684 816 1.078356 GGCCGAGGAGGGACTTTTC 60.078 63.158 0.00 0.00 41.55 2.29
686 818 1.846124 TTGGCCGAGGAGGGACTTT 60.846 57.895 0.00 0.00 41.55 2.66
687 819 2.203938 TTGGCCGAGGAGGGACTT 60.204 61.111 0.00 0.00 41.55 3.01
690 822 3.003173 CTGTTGGCCGAGGAGGGA 61.003 66.667 0.00 0.00 41.48 4.20
691 823 4.101448 CCTGTTGGCCGAGGAGGG 62.101 72.222 9.25 0.00 41.48 4.30
692 824 3.003173 TCCTGTTGGCCGAGGAGG 61.003 66.667 12.82 11.80 44.97 4.30
694 826 3.003173 CCTCCTGTTGGCCGAGGA 61.003 66.667 16.43 15.86 45.15 3.71
695 827 4.785453 GCCTCCTGTTGGCCGAGG 62.785 72.222 16.95 16.95 45.12 4.63
701 833 2.046892 CTGTCGGCCTCCTGTTGG 60.047 66.667 0.00 0.00 0.00 3.77
702 834 1.903877 ATCCTGTCGGCCTCCTGTTG 61.904 60.000 0.00 0.00 0.00 3.33
703 835 1.613630 ATCCTGTCGGCCTCCTGTT 60.614 57.895 0.00 0.00 0.00 3.16
706 838 0.188587 TATCATCCTGTCGGCCTCCT 59.811 55.000 0.00 0.00 0.00 3.69
708 840 1.333177 AGTATCATCCTGTCGGCCTC 58.667 55.000 0.00 0.00 0.00 4.70
709 841 1.794714 AAGTATCATCCTGTCGGCCT 58.205 50.000 0.00 0.00 0.00 5.19
710 842 2.614057 CAAAAGTATCATCCTGTCGGCC 59.386 50.000 0.00 0.00 0.00 6.13
711 843 3.531538 TCAAAAGTATCATCCTGTCGGC 58.468 45.455 0.00 0.00 0.00 5.54
712 844 6.683974 AAATCAAAAGTATCATCCTGTCGG 57.316 37.500 0.00 0.00 0.00 4.79
736 915 6.795144 ATCATCCTGTCCATAATGCAAAAA 57.205 33.333 0.00 0.00 0.00 1.94
738 917 6.604171 AGTATCATCCTGTCCATAATGCAAA 58.396 36.000 0.00 0.00 0.00 3.68
741 920 7.229306 TCAAAAGTATCATCCTGTCCATAATGC 59.771 37.037 0.00 0.00 0.00 3.56
747 926 8.421249 AAAAATCAAAAGTATCATCCTGTCCA 57.579 30.769 0.00 0.00 0.00 4.02
771 950 7.337184 TCGGAAACTATACACCATAATGCAAAA 59.663 33.333 0.00 0.00 0.00 2.44
774 953 5.919755 TCGGAAACTATACACCATAATGCA 58.080 37.500 0.00 0.00 0.00 3.96
775 954 6.854496 TTCGGAAACTATACACCATAATGC 57.146 37.500 0.00 0.00 0.00 3.56
776 955 9.663904 CAATTTCGGAAACTATACACCATAATG 57.336 33.333 5.12 0.00 0.00 1.90
777 956 8.349983 GCAATTTCGGAAACTATACACCATAAT 58.650 33.333 5.12 0.00 0.00 1.28
778 957 7.554835 AGCAATTTCGGAAACTATACACCATAA 59.445 33.333 5.12 0.00 0.00 1.90
779 958 7.051623 AGCAATTTCGGAAACTATACACCATA 58.948 34.615 5.12 0.00 0.00 2.74
780 959 5.885912 AGCAATTTCGGAAACTATACACCAT 59.114 36.000 5.12 0.00 0.00 3.55
781 960 5.250200 AGCAATTTCGGAAACTATACACCA 58.750 37.500 5.12 0.00 0.00 4.17
828 1293 1.671166 GTTGGGCCGGCAGATTTTT 59.329 52.632 30.85 0.00 0.00 1.94
850 1315 2.933056 GCCTTTTCTCTTCCAGACTCCG 60.933 54.545 0.00 0.00 0.00 4.63
852 1317 2.342179 CGCCTTTTCTCTTCCAGACTC 58.658 52.381 0.00 0.00 0.00 3.36
886 1351 2.342179 CTCTCCTTTCTCTTTGACGGC 58.658 52.381 0.00 0.00 0.00 5.68
989 1470 0.907486 TCTGGCCATGAGGTGAGAAG 59.093 55.000 5.51 0.00 37.19 2.85
1080 1564 0.731417 CCTTGCTCTTGATTCTGCCG 59.269 55.000 0.00 0.00 0.00 5.69
1328 2179 2.606155 GAAGGCGTCGAGAGCAGAGG 62.606 65.000 13.82 0.00 36.08 3.69
1360 2211 4.144902 CAGCGAGTAGAATACAACGATTCG 59.855 45.833 4.14 4.14 46.26 3.34
1362 2213 4.097437 TCCAGCGAGTAGAATACAACGATT 59.903 41.667 0.00 0.00 46.26 3.34
1413 2267 0.872881 ACACGACAGTACAACGCACC 60.873 55.000 0.00 0.00 0.00 5.01
1490 2352 4.382685 CCCGAGAACAAATGGAAGCTAGTA 60.383 45.833 0.00 0.00 0.00 1.82
1491 2353 3.600388 CCGAGAACAAATGGAAGCTAGT 58.400 45.455 0.00 0.00 0.00 2.57
1492 2354 2.939103 CCCGAGAACAAATGGAAGCTAG 59.061 50.000 0.00 0.00 0.00 3.42
1556 2418 2.223112 CGCAAGAAAATGGATGGTCTCG 60.223 50.000 0.00 0.00 43.02 4.04
1561 2423 3.504863 CTCAACGCAAGAAAATGGATGG 58.495 45.455 0.00 0.00 43.62 3.51
1585 2447 2.005451 CTGTGCTGATTCGGGAAAGAG 58.995 52.381 0.00 0.00 0.00 2.85
1591 2453 2.401766 GGTGCTGTGCTGATTCGGG 61.402 63.158 0.00 0.00 0.00 5.14
1610 2472 3.006752 TGGCTGAAAATGTCATTTGGGAC 59.993 43.478 11.54 7.69 35.07 4.46
1613 2475 4.142773 GCATTGGCTGAAAATGTCATTTGG 60.143 41.667 11.54 6.68 37.35 3.28
1617 2480 3.965379 TGCATTGGCTGAAAATGTCAT 57.035 38.095 0.00 0.00 41.91 3.06
1625 2488 0.968405 GGTCCTTTGCATTGGCTGAA 59.032 50.000 0.00 0.00 41.91 3.02
1690 2553 9.471084 GTAAAAACTGCCATGTAGTGTAAAATT 57.529 29.630 1.12 0.00 0.00 1.82
1691 2554 8.856103 AGTAAAAACTGCCATGTAGTGTAAAAT 58.144 29.630 1.12 0.00 0.00 1.82
1696 2559 6.709018 AAAGTAAAAACTGCCATGTAGTGT 57.291 33.333 1.12 0.00 0.00 3.55
1697 2560 9.522804 TTTTAAAGTAAAAACTGCCATGTAGTG 57.477 29.630 1.12 0.00 34.94 2.74
1751 2643 9.681692 TTTATCATGCGGAAATAGATGAAATTG 57.318 29.630 0.00 0.00 0.00 2.32
1766 2658 3.249320 CAGTGACCAGATTTATCATGCGG 59.751 47.826 0.00 0.00 0.00 5.69
1774 2666 7.942341 ACACTAAAAATCCAGTGACCAGATTTA 59.058 33.333 8.61 0.00 43.99 1.40
1777 2669 5.880901 ACACTAAAAATCCAGTGACCAGAT 58.119 37.500 8.61 0.00 43.99 2.90
1788 2680 9.673454 ACGTTAGATTTTGAACACTAAAAATCC 57.327 29.630 14.17 2.96 46.70 3.01
1811 2703 2.351350 GGAAATGTTGCAAATCCGACGT 60.351 45.455 0.00 0.00 0.00 4.34
1812 2704 2.095263 AGGAAATGTTGCAAATCCGACG 60.095 45.455 0.00 0.00 35.31 5.12
1814 2706 3.153130 TCAGGAAATGTTGCAAATCCGA 58.847 40.909 0.00 6.51 35.31 4.55
1823 2715 5.009854 ACTGTTGGTTTCAGGAAATGTTG 57.990 39.130 0.00 0.00 37.25 3.33
1838 2730 1.847890 CGTTGCCCCGTTACTGTTGG 61.848 60.000 0.00 0.00 0.00 3.77
1859 2751 5.833131 TCCTTTTGTAAATATCCCCTGCATC 59.167 40.000 0.00 0.00 0.00 3.91
1864 2756 8.966155 TTTTTCTCCTTTTGTAAATATCCCCT 57.034 30.769 0.00 0.00 0.00 4.79
1884 2776 8.328146 GGCTTGTTAATTTGAACTGTCTTTTTC 58.672 33.333 0.00 0.00 0.00 2.29
1890 4167 8.865590 TTAAAGGCTTGTTAATTTGAACTGTC 57.134 30.769 0.00 0.00 0.00 3.51
1893 4170 9.639601 GCTATTAAAGGCTTGTTAATTTGAACT 57.360 29.630 0.00 0.00 34.02 3.01
1922 4945 1.026182 GCACCGGTCATCATCAAGCA 61.026 55.000 2.59 0.00 0.00 3.91
1950 4973 2.030893 TCCATTCGCTTGTTCTTGCTTG 60.031 45.455 0.00 0.00 0.00 4.01
2051 5129 1.152756 AGCTTTGGACACCACCACC 60.153 57.895 0.00 0.00 39.85 4.61
2052 5130 0.465460 TCAGCTTTGGACACCACCAC 60.465 55.000 0.00 0.00 39.85 4.16
2053 5131 0.179020 CTCAGCTTTGGACACCACCA 60.179 55.000 0.00 0.00 38.24 4.17
2136 5446 0.329596 GGAAGGAGGCATGGAGTGTT 59.670 55.000 0.00 0.00 0.00 3.32
2140 5450 0.178998 CCATGGAAGGAGGCATGGAG 60.179 60.000 5.56 0.00 45.40 3.86
2187 5499 2.368548 TGGTCAATCAGTACAGCTGTGT 59.631 45.455 29.57 13.63 45.23 3.72
2212 5524 2.862541 ACAGCTGTGTCATTGGCTTTA 58.137 42.857 20.97 0.00 32.30 1.85
2213 5525 1.696063 ACAGCTGTGTCATTGGCTTT 58.304 45.000 20.97 0.00 32.30 3.51
2214 5526 2.154462 GTACAGCTGTGTCATTGGCTT 58.846 47.619 29.57 0.00 38.19 4.35
2215 5527 1.349026 AGTACAGCTGTGTCATTGGCT 59.651 47.619 29.57 10.59 38.19 4.75
2216 5528 1.466167 CAGTACAGCTGTGTCATTGGC 59.534 52.381 29.57 8.63 40.27 4.52
2217 5529 3.044235 TCAGTACAGCTGTGTCATTGG 57.956 47.619 29.57 11.20 45.23 3.16
2218 5530 4.692155 TCAATCAGTACAGCTGTGTCATTG 59.308 41.667 29.57 25.67 45.23 2.82
2219 5531 4.692625 GTCAATCAGTACAGCTGTGTCATT 59.307 41.667 29.57 17.26 45.23 2.57
2220 5532 4.248859 GTCAATCAGTACAGCTGTGTCAT 58.751 43.478 29.57 12.45 45.23 3.06
2221 5533 3.554960 GGTCAATCAGTACAGCTGTGTCA 60.555 47.826 29.57 6.67 45.23 3.58
2222 5534 2.996621 GGTCAATCAGTACAGCTGTGTC 59.003 50.000 29.57 20.49 45.23 3.67
2223 5535 2.368548 TGGTCAATCAGTACAGCTGTGT 59.631 45.455 29.57 13.63 45.23 3.72
2224 5536 2.738846 GTGGTCAATCAGTACAGCTGTG 59.261 50.000 29.57 13.08 45.23 3.66
2225 5537 2.610479 CGTGGTCAATCAGTACAGCTGT 60.610 50.000 25.12 25.12 45.23 4.40
2226 5538 1.995484 CGTGGTCAATCAGTACAGCTG 59.005 52.381 13.48 13.48 46.34 4.24
2227 5539 1.673033 GCGTGGTCAATCAGTACAGCT 60.673 52.381 0.00 0.00 0.00 4.24
2228 5540 0.721718 GCGTGGTCAATCAGTACAGC 59.278 55.000 0.00 0.00 0.00 4.40
2229 5541 2.370281 AGCGTGGTCAATCAGTACAG 57.630 50.000 0.00 0.00 0.00 2.74
2230 5542 3.945981 TTAGCGTGGTCAATCAGTACA 57.054 42.857 0.00 0.00 0.00 2.90
2231 5543 3.370061 GGTTTAGCGTGGTCAATCAGTAC 59.630 47.826 0.00 0.00 0.00 2.73
2232 5544 3.592059 GGTTTAGCGTGGTCAATCAGTA 58.408 45.455 0.00 0.00 0.00 2.74
2233 5545 2.423577 GGTTTAGCGTGGTCAATCAGT 58.576 47.619 0.00 0.00 0.00 3.41
2234 5546 1.393539 CGGTTTAGCGTGGTCAATCAG 59.606 52.381 0.00 0.00 0.00 2.90
2235 5547 1.001068 TCGGTTTAGCGTGGTCAATCA 59.999 47.619 1.03 0.00 0.00 2.57
2236 5548 1.717194 TCGGTTTAGCGTGGTCAATC 58.283 50.000 1.03 0.00 0.00 2.67
2237 5549 1.802365 GTTCGGTTTAGCGTGGTCAAT 59.198 47.619 1.03 0.00 0.00 2.57
2238 5550 1.219646 GTTCGGTTTAGCGTGGTCAA 58.780 50.000 1.03 0.00 0.00 3.18
2239 5551 0.940519 CGTTCGGTTTAGCGTGGTCA 60.941 55.000 1.03 0.00 0.00 4.02
2240 5552 0.664166 TCGTTCGGTTTAGCGTGGTC 60.664 55.000 1.03 0.00 0.00 4.02
2241 5553 0.037975 ATCGTTCGGTTTAGCGTGGT 60.038 50.000 1.03 0.00 0.00 4.16
2242 5554 1.073177 AATCGTTCGGTTTAGCGTGG 58.927 50.000 1.03 0.00 0.00 4.94
2243 5555 4.509915 AATAATCGTTCGGTTTAGCGTG 57.490 40.909 0.00 0.00 0.00 5.34
2244 5556 5.176223 CCATAATAATCGTTCGGTTTAGCGT 59.824 40.000 0.00 0.00 0.00 5.07
2245 5557 5.403166 TCCATAATAATCGTTCGGTTTAGCG 59.597 40.000 0.00 0.00 0.00 4.26
2246 5558 6.774354 TCCATAATAATCGTTCGGTTTAGC 57.226 37.500 0.00 0.00 0.00 3.09
2247 5559 8.583810 TCTTCCATAATAATCGTTCGGTTTAG 57.416 34.615 0.00 0.00 0.00 1.85
2288 5600 3.258228 CATTGATTGCAAAGCAGCATGA 58.742 40.909 1.71 0.00 46.13 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.