Multiple sequence alignment - TraesCS3B01G316000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G316000 chr3B 100.000 8447 0 0 1 8447 507490355 507498801 0.000000e+00 15599.0
1 TraesCS3B01G316000 chr3B 97.017 3151 91 3 3318 6466 799718669 799715520 0.000000e+00 5295.0
2 TraesCS3B01G316000 chr3B 95.044 1715 59 4 1629 3326 799741325 799739620 0.000000e+00 2673.0
3 TraesCS3B01G316000 chr3B 100.000 177 0 0 6292 6468 507491984 507492160 2.270000e-85 327.0
4 TraesCS3B01G316000 chr3B 100.000 177 0 0 1630 1806 507496646 507496822 2.270000e-85 327.0
5 TraesCS3B01G316000 chr3B 97.143 175 5 0 1633 1807 799715691 799715517 6.410000e-76 296.0
6 TraesCS3B01G316000 chr3B 95.531 179 6 2 6288 6466 799741327 799741151 1.390000e-72 285.0
7 TraesCS3B01G316000 chr3B 75.645 349 69 10 445 791 497535585 497535251 8.780000e-35 159.0
8 TraesCS3B01G316000 chr1A 99.401 4840 27 2 1630 6468 3462254 3457416 0.000000e+00 8776.0
9 TraesCS3B01G316000 chr1A 100.000 177 0 0 1630 1806 3457592 3457416 2.270000e-85 327.0
10 TraesCS3B01G316000 chr1A 99.435 177 1 0 6292 6468 3462254 3462078 1.060000e-83 322.0
11 TraesCS3B01G316000 chr1A 80.000 90 14 4 6071 6158 539459456 539459543 7.080000e-06 63.9
12 TraesCS3B01G316000 chr7A 99.318 4841 31 2 1630 6469 589323714 589328553 0.000000e+00 8756.0
13 TraesCS3B01G316000 chr7A 100.000 177 0 0 6292 6468 589323714 589323890 2.270000e-85 327.0
14 TraesCS3B01G316000 chr7A 100.000 177 0 0 1630 1806 589328376 589328552 2.270000e-85 327.0
15 TraesCS3B01G316000 chr2B 99.236 4840 33 2 1630 6468 17817385 17822221 0.000000e+00 8730.0
16 TraesCS3B01G316000 chr2B 100.000 177 0 0 6292 6468 17817385 17817561 2.270000e-85 327.0
17 TraesCS3B01G316000 chr2B 98.870 177 2 0 1630 1806 17822045 17822221 4.920000e-82 316.0
18 TraesCS3B01G316000 chr2B 81.731 104 17 2 135 238 602214113 602214012 1.510000e-12 86.1
19 TraesCS3B01G316000 chr2B 85.714 77 9 2 162 238 1546736 1546810 7.030000e-11 80.5
20 TraesCS3B01G316000 chr2B 85.714 77 9 2 162 238 1569498 1569572 7.030000e-11 80.5
21 TraesCS3B01G316000 chr2B 85.714 77 9 2 162 238 1594119 1594193 7.030000e-11 80.5
22 TraesCS3B01G316000 chr2B 85.714 77 9 2 162 238 1617954 1618028 7.030000e-11 80.5
23 TraesCS3B01G316000 chr3A 94.649 1981 83 12 6474 8447 510829101 510831065 0.000000e+00 3049.0
24 TraesCS3B01G316000 chr3A 97.393 652 14 2 976 1627 510828450 510829098 0.000000e+00 1107.0
25 TraesCS3B01G316000 chr3A 87.465 359 35 8 1 354 510827333 510827686 1.020000e-108 405.0
26 TraesCS3B01G316000 chr3A 94.366 142 5 2 848 987 510828292 510828432 1.850000e-51 215.0
27 TraesCS3B01G316000 chr3A 78.761 113 20 4 6048 6158 577040702 577040592 1.180000e-08 73.1
28 TraesCS3B01G316000 chr2D 95.086 1913 76 8 4435 6346 22459292 22461187 0.000000e+00 2996.0
29 TraesCS3B01G316000 chr2D 94.922 512 26 0 3928 4439 22457227 22457738 0.000000e+00 802.0
30 TraesCS3B01G316000 chr2D 73.103 1476 369 25 4837 6298 641581019 641582480 1.270000e-137 501.0
31 TraesCS3B01G316000 chr2D 95.154 227 7 3 3672 3897 22457006 22457229 1.040000e-93 355.0
32 TraesCS3B01G316000 chr3D 92.481 1596 60 18 6474 8044 390411605 390413165 0.000000e+00 2228.0
33 TraesCS3B01G316000 chr3D 97.108 657 16 2 971 1627 390410949 390411602 0.000000e+00 1105.0
34 TraesCS3B01G316000 chr3D 86.560 439 28 10 8037 8447 390413546 390413981 1.000000e-123 455.0
35 TraesCS3B01G316000 chr3D 79.545 352 61 4 408 758 459038575 459038916 3.050000e-59 241.0
36 TraesCS3B01G316000 chr3D 77.522 347 61 10 446 791 381973184 381972854 8.650000e-45 193.0
37 TraesCS3B01G316000 chr3D 90.210 143 10 2 848 990 390410800 390410938 5.210000e-42 183.0
38 TraesCS3B01G316000 chr4A 79.884 517 94 8 1965 2478 699038081 699037572 3.720000e-98 370.0
39 TraesCS3B01G316000 chr4A 88.710 62 7 0 413 474 170167368 170167429 9.090000e-10 76.8
40 TraesCS3B01G316000 chr2A 82.234 394 57 10 394 785 38810364 38809982 2.270000e-85 327.0
41 TraesCS3B01G316000 chr2A 71.865 327 74 17 5613 5930 386055762 386056079 2.530000e-10 78.7
42 TraesCS3B01G316000 chr2A 80.208 96 19 0 5613 5708 610228860 610228765 1.180000e-08 73.1
43 TraesCS3B01G316000 chr2A 100.000 28 0 0 2659 2686 605163548 605163521 1.500000e-02 52.8
44 TraesCS3B01G316000 chr5A 81.026 390 57 14 408 793 562505800 562506176 2.310000e-75 294.0
45 TraesCS3B01G316000 chr4B 80.100 402 69 9 408 808 364151319 364151710 1.070000e-73 289.0
46 TraesCS3B01G316000 chr6A 84.043 282 41 4 480 760 499475852 499475574 1.400000e-67 268.0
47 TraesCS3B01G316000 chr6A 78.761 113 20 4 6048 6158 13533844 13533734 1.180000e-08 73.1
48 TraesCS3B01G316000 chr6D 81.703 317 45 9 408 722 450971884 450972189 1.410000e-62 252.0
49 TraesCS3B01G316000 chr7B 75.710 317 60 13 481 790 706350922 706351228 8.840000e-30 143.0
50 TraesCS3B01G316000 chr7B 73.095 420 99 14 1982 2394 11011203 11010791 4.110000e-28 137.0
51 TraesCS3B01G316000 chr5D 81.720 93 13 4 6067 6157 563210943 563211033 3.270000e-09 75.0
52 TraesCS3B01G316000 chr1B 79.570 93 19 0 5613 5705 45987573 45987665 5.470000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G316000 chr3B 507490355 507498801 8446 False 15599.000000 15599 100.00000 1 8447 1 chr3B.!!$F1 8446
1 TraesCS3B01G316000 chr3B 799715517 799718669 3152 True 2795.500000 5295 97.08000 1633 6466 2 chr3B.!!$R2 4833
2 TraesCS3B01G316000 chr3B 799739620 799741327 1707 True 1479.000000 2673 95.28750 1629 6466 2 chr3B.!!$R3 4837
3 TraesCS3B01G316000 chr1A 3457416 3462254 4838 True 8776.000000 8776 99.40100 1630 6468 1 chr1A.!!$R1 4838
4 TraesCS3B01G316000 chr7A 589323714 589328553 4839 False 8756.000000 8756 99.31800 1630 6469 1 chr7A.!!$F1 4839
5 TraesCS3B01G316000 chr2B 17817385 17822221 4836 False 8730.000000 8730 99.23600 1630 6468 1 chr2B.!!$F5 4838
6 TraesCS3B01G316000 chr3A 510827333 510831065 3732 False 1194.000000 3049 93.46825 1 8447 4 chr3A.!!$F1 8446
7 TraesCS3B01G316000 chr2D 22457006 22461187 4181 False 1384.333333 2996 95.05400 3672 6346 3 chr2D.!!$F2 2674
8 TraesCS3B01G316000 chr2D 641581019 641582480 1461 False 501.000000 501 73.10300 4837 6298 1 chr2D.!!$F1 1461
9 TraesCS3B01G316000 chr3D 390410800 390413981 3181 False 992.750000 2228 91.58975 848 8447 4 chr3D.!!$F2 7599
10 TraesCS3B01G316000 chr4A 699037572 699038081 509 True 370.000000 370 79.88400 1965 2478 1 chr4A.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 1306 0.034670 ATGCCTCTCTCAGTTTGGCC 60.035 55.0 0.00 0.0 42.62 5.36 F
1513 2050 0.100861 GTCCGACGTCAAGATCTCCC 59.899 60.0 17.16 0.0 0.00 4.30 F
4211 4767 2.357009 GCCATACATCAGCCTTCACAAG 59.643 50.0 0.00 0.0 0.00 3.16 F
5038 7152 0.458669 ACGATTCGTGCCGTCCTATT 59.541 50.0 11.56 0.0 39.18 1.73 F
6567 8695 0.443869 CAGCAGGTCGGTCAAAATCG 59.556 55.0 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2686 3232 1.658114 GGTGCTGAAAACCGGGAAC 59.342 57.895 6.32 0.0 0.00 3.62 R
3012 3566 4.171103 GGCGAGGCCGGGTATGTT 62.171 66.667 2.18 0.0 39.62 2.71 R
5586 7713 0.178990 GGGTCAGAAACAGGGTTGCT 60.179 55.000 0.00 0.0 0.00 3.91 R
6985 9117 0.315568 TGGGTAAAAACATGCGTGGC 59.684 50.000 11.36 0.0 0.00 5.01 R
8197 10746 0.381801 AAGCTGGTGTCAGTTTTGCG 59.618 50.000 0.00 0.0 40.73 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.790962 ACAGCTGAGGCCATGGCG 62.791 66.667 29.90 17.31 43.06 5.69
23 24 4.100084 CTGAGGCCATGGCGGTGA 62.100 66.667 29.90 13.40 43.06 4.02
38 39 0.681243 GGTGAGATTGGGCCTGAACC 60.681 60.000 4.53 0.19 0.00 3.62
48 49 2.383527 GCCTGAACCTCGCACGAAG 61.384 63.158 0.00 0.00 0.00 3.79
73 74 1.135460 GGTTGCAGCAAGCTTGAGATC 60.135 52.381 30.39 12.04 45.94 2.75
79 80 3.072211 CAGCAAGCTTGAGATCAGTTCA 58.928 45.455 30.39 0.00 0.00 3.18
80 81 3.125487 CAGCAAGCTTGAGATCAGTTCAG 59.875 47.826 30.39 1.93 0.00 3.02
87 88 5.129155 AGCTTGAGATCAGTTCAGATAGCTT 59.871 40.000 0.00 0.00 34.35 3.74
88 89 5.234757 GCTTGAGATCAGTTCAGATAGCTTG 59.765 44.000 0.00 0.00 0.00 4.01
91 92 6.939622 TGAGATCAGTTCAGATAGCTTGAAA 58.060 36.000 0.92 0.00 0.00 2.69
106 107 5.266788 AGCTTGAAAGATGGGAATTCATCA 58.733 37.500 7.93 5.52 44.30 3.07
107 108 5.897824 AGCTTGAAAGATGGGAATTCATCAT 59.102 36.000 7.93 10.17 44.30 2.45
110 111 4.823442 TGAAAGATGGGAATTCATCATCGG 59.177 41.667 23.39 0.00 44.30 4.18
121 122 4.335400 TTCATCATCGGTAGCTAATGCA 57.665 40.909 0.00 0.00 42.74 3.96
145 146 9.532697 GCAACATTTGACAATTGTTATTTCATC 57.467 29.630 21.74 0.00 0.00 2.92
206 208 9.982651 GTAATAGAGAATGTAATCAAGTAGCCA 57.017 33.333 0.00 0.00 0.00 4.75
223 225 3.563223 AGCCAACGAACTAGCTAGGATA 58.437 45.455 24.35 0.00 32.73 2.59
224 226 4.153411 AGCCAACGAACTAGCTAGGATAT 58.847 43.478 24.35 7.90 32.73 1.63
225 227 5.322754 AGCCAACGAACTAGCTAGGATATA 58.677 41.667 24.35 0.00 32.73 0.86
226 228 5.416326 AGCCAACGAACTAGCTAGGATATAG 59.584 44.000 24.35 11.45 32.73 1.31
269 274 0.401738 ATGGATTCCGGATTCCGCAT 59.598 50.000 30.67 20.96 46.86 4.73
284 289 4.681421 CATCGGATGCGGTGCTAT 57.319 55.556 7.03 0.00 0.00 2.97
297 302 3.807209 GCGGTGCTATCCCATCTTGTAAT 60.807 47.826 0.00 0.00 0.00 1.89
315 321 7.595875 TCTTGTAATGATGCAACAATTCTTGTG 59.404 33.333 0.00 0.00 44.59 3.33
322 328 4.671377 TGCAACAATTCTTGTGAGTGAAC 58.329 39.130 0.00 0.00 44.59 3.18
339 345 4.332819 AGTGAACAAAGGAGAAGTTTGTCG 59.667 41.667 1.92 0.00 45.30 4.35
340 346 3.625764 TGAACAAAGGAGAAGTTTGTCGG 59.374 43.478 1.92 0.00 45.30 4.79
341 347 3.277142 ACAAAGGAGAAGTTTGTCGGT 57.723 42.857 0.00 0.00 43.12 4.69
355 862 3.408288 TGTCGGTAAAAAGTGTGTTGC 57.592 42.857 0.00 0.00 0.00 4.17
357 864 3.181505 TGTCGGTAAAAAGTGTGTTGCTG 60.182 43.478 0.00 0.00 0.00 4.41
378 885 2.399396 AGCATGTGGTTTCGTTTTCG 57.601 45.000 0.00 0.00 45.64 3.46
379 886 1.673920 AGCATGTGGTTTCGTTTTCGT 59.326 42.857 0.00 0.00 44.46 3.85
380 887 2.873472 AGCATGTGGTTTCGTTTTCGTA 59.127 40.909 0.00 0.00 44.46 3.43
381 888 3.059188 AGCATGTGGTTTCGTTTTCGTAG 60.059 43.478 0.00 0.00 44.46 3.51
382 889 3.059461 GCATGTGGTTTCGTTTTCGTAGA 60.059 43.478 0.00 0.00 44.46 2.59
383 890 4.378046 GCATGTGGTTTCGTTTTCGTAGAT 60.378 41.667 0.00 0.00 44.46 1.98
384 891 5.163933 GCATGTGGTTTCGTTTTCGTAGATA 60.164 40.000 0.00 0.00 44.46 1.98
385 892 6.466812 CATGTGGTTTCGTTTTCGTAGATAG 58.533 40.000 0.00 0.00 44.46 2.08
386 893 5.771469 TGTGGTTTCGTTTTCGTAGATAGA 58.229 37.500 0.00 0.00 44.46 1.98
388 895 6.700960 TGTGGTTTCGTTTTCGTAGATAGAAA 59.299 34.615 0.00 0.00 44.46 2.52
389 896 7.224362 TGTGGTTTCGTTTTCGTAGATAGAAAA 59.776 33.333 0.63 0.63 42.96 2.29
390 897 8.063630 GTGGTTTCGTTTTCGTAGATAGAAAAA 58.936 33.333 5.80 0.00 45.49 1.94
391 898 8.063630 TGGTTTCGTTTTCGTAGATAGAAAAAC 58.936 33.333 5.80 2.08 45.49 2.43
392 899 7.531871 GGTTTCGTTTTCGTAGATAGAAAAACC 59.468 37.037 5.80 6.51 45.49 3.27
393 900 6.380111 TCGTTTTCGTAGATAGAAAAACCG 57.620 37.500 5.80 6.82 45.49 4.44
394 901 5.011370 CGTTTTCGTAGATAGAAAAACCGC 58.989 41.667 5.80 0.00 45.49 5.68
395 902 4.828291 TTTCGTAGATAGAAAAACCGCG 57.172 40.909 0.00 0.00 35.00 6.46
396 903 2.801063 TCGTAGATAGAAAAACCGCGG 58.199 47.619 26.86 26.86 0.00 6.46
397 904 2.423185 TCGTAGATAGAAAAACCGCGGA 59.577 45.455 35.90 7.74 0.00 5.54
398 905 3.119531 TCGTAGATAGAAAAACCGCGGAA 60.120 43.478 35.90 7.93 0.00 4.30
400 907 4.269363 CGTAGATAGAAAAACCGCGGAAAT 59.731 41.667 35.90 15.08 0.00 2.17
401 908 5.220529 CGTAGATAGAAAAACCGCGGAAATT 60.221 40.000 35.90 22.20 0.00 1.82
402 909 5.231265 AGATAGAAAAACCGCGGAAATTC 57.769 39.130 35.90 28.25 0.00 2.17
404 911 3.934457 AGAAAAACCGCGGAAATTCAT 57.066 38.095 35.90 16.97 0.00 2.57
406 913 4.627058 AGAAAAACCGCGGAAATTCATTT 58.373 34.783 35.90 17.29 0.00 2.32
407 914 5.053811 AGAAAAACCGCGGAAATTCATTTT 58.946 33.333 35.90 22.28 0.00 1.82
423 930 2.725811 TTTTTCGCACATGGGAGCA 58.274 47.368 0.00 0.00 38.26 4.26
424 931 1.255882 TTTTTCGCACATGGGAGCAT 58.744 45.000 0.00 0.00 38.26 3.79
425 932 2.121291 TTTTCGCACATGGGAGCATA 57.879 45.000 0.00 0.00 38.26 3.14
426 933 2.346766 TTTCGCACATGGGAGCATAT 57.653 45.000 0.00 0.00 38.26 1.78
427 934 1.596603 TTCGCACATGGGAGCATATG 58.403 50.000 0.00 0.00 38.26 1.78
428 935 0.886043 TCGCACATGGGAGCATATGC 60.886 55.000 20.36 20.36 42.49 3.14
438 945 3.755434 GCATATGCTCCTGCCACC 58.245 61.111 20.64 0.00 38.71 4.61
439 946 2.256591 GCATATGCTCCTGCCACCG 61.257 63.158 20.64 0.00 38.71 4.94
440 947 1.598962 CATATGCTCCTGCCACCGG 60.599 63.158 0.00 0.00 38.71 5.28
441 948 2.072487 ATATGCTCCTGCCACCGGT 61.072 57.895 0.00 0.00 38.71 5.28
442 949 0.762842 ATATGCTCCTGCCACCGGTA 60.763 55.000 6.87 0.00 38.71 4.02
443 950 0.762842 TATGCTCCTGCCACCGGTAT 60.763 55.000 6.87 0.00 38.71 2.73
444 951 2.203070 GCTCCTGCCACCGGTATG 60.203 66.667 6.87 2.08 0.00 2.39
445 952 2.731571 GCTCCTGCCACCGGTATGA 61.732 63.158 6.87 0.00 0.00 2.15
446 953 1.904771 CTCCTGCCACCGGTATGAA 59.095 57.895 6.87 0.00 0.00 2.57
447 954 0.251916 CTCCTGCCACCGGTATGAAA 59.748 55.000 6.87 0.00 0.00 2.69
448 955 0.693622 TCCTGCCACCGGTATGAAAA 59.306 50.000 6.87 0.00 0.00 2.29
449 956 1.074084 TCCTGCCACCGGTATGAAAAA 59.926 47.619 6.87 0.00 0.00 1.94
450 957 2.099405 CCTGCCACCGGTATGAAAAAT 58.901 47.619 6.87 0.00 0.00 1.82
451 958 3.054287 TCCTGCCACCGGTATGAAAAATA 60.054 43.478 6.87 0.00 0.00 1.40
452 959 3.697045 CCTGCCACCGGTATGAAAAATAA 59.303 43.478 6.87 0.00 0.00 1.40
453 960 4.340950 CCTGCCACCGGTATGAAAAATAAT 59.659 41.667 6.87 0.00 0.00 1.28
454 961 5.163457 CCTGCCACCGGTATGAAAAATAATT 60.163 40.000 6.87 0.00 0.00 1.40
455 962 5.897050 TGCCACCGGTATGAAAAATAATTC 58.103 37.500 6.87 0.00 0.00 2.17
456 963 5.419155 TGCCACCGGTATGAAAAATAATTCA 59.581 36.000 6.87 0.00 43.03 2.57
457 964 6.071334 TGCCACCGGTATGAAAAATAATTCAA 60.071 34.615 6.87 0.00 42.22 2.69
458 965 6.814146 GCCACCGGTATGAAAAATAATTCAAA 59.186 34.615 6.87 0.00 42.22 2.69
459 966 7.332182 GCCACCGGTATGAAAAATAATTCAAAA 59.668 33.333 6.87 0.00 42.22 2.44
460 967 9.377312 CCACCGGTATGAAAAATAATTCAAAAT 57.623 29.630 6.87 0.00 42.22 1.82
462 969 9.936759 ACCGGTATGAAAAATAATTCAAAATGT 57.063 25.926 4.49 0.00 42.22 2.71
475 982 9.757227 ATAATTCAAAATGTCAAAAAGTTCCGA 57.243 25.926 0.00 0.00 0.00 4.55
476 983 8.485976 AATTCAAAATGTCAAAAAGTTCCGAA 57.514 26.923 0.00 0.00 0.00 4.30
477 984 6.879188 TCAAAATGTCAAAAAGTTCCGAAC 57.121 33.333 2.81 2.81 0.00 3.95
478 985 6.390721 TCAAAATGTCAAAAAGTTCCGAACA 58.609 32.000 13.69 0.00 0.00 3.18
479 986 6.868864 TCAAAATGTCAAAAAGTTCCGAACAA 59.131 30.769 13.69 0.00 0.00 2.83
480 987 7.385205 TCAAAATGTCAAAAAGTTCCGAACAAA 59.615 29.630 13.69 0.00 0.00 2.83
481 988 7.659652 AAATGTCAAAAAGTTCCGAACAAAA 57.340 28.000 13.69 0.00 0.00 2.44
482 989 7.659652 AATGTCAAAAAGTTCCGAACAAAAA 57.340 28.000 13.69 0.00 0.00 1.94
483 990 7.841915 ATGTCAAAAAGTTCCGAACAAAAAT 57.158 28.000 13.69 0.00 0.00 1.82
484 991 7.659652 TGTCAAAAAGTTCCGAACAAAAATT 57.340 28.000 13.69 0.00 0.00 1.82
485 992 8.089115 TGTCAAAAAGTTCCGAACAAAAATTT 57.911 26.923 13.69 2.34 0.00 1.82
486 993 8.012241 TGTCAAAAAGTTCCGAACAAAAATTTG 58.988 29.630 13.69 14.20 43.62 2.32
487 994 7.480229 GTCAAAAAGTTCCGAACAAAAATTTGG 59.520 33.333 13.69 4.85 42.34 3.28
488 995 5.478233 AAAGTTCCGAACAAAAATTTGGC 57.522 34.783 13.69 1.83 42.34 4.52
489 996 3.120041 AGTTCCGAACAAAAATTTGGCG 58.880 40.909 13.69 11.94 42.34 5.69
490 997 1.492720 TCCGAACAAAAATTTGGCGC 58.507 45.000 0.00 0.00 42.34 6.53
491 998 0.510790 CCGAACAAAAATTTGGCGCC 59.489 50.000 22.73 22.73 42.34 6.53
492 999 1.496934 CGAACAAAAATTTGGCGCCT 58.503 45.000 29.70 3.84 42.34 5.52
493 1000 2.608261 CCGAACAAAAATTTGGCGCCTA 60.608 45.455 29.70 19.10 42.34 3.93
494 1001 2.407026 CGAACAAAAATTTGGCGCCTAC 59.593 45.455 29.70 0.50 42.34 3.18
495 1002 3.385577 GAACAAAAATTTGGCGCCTACA 58.614 40.909 29.70 11.91 42.34 2.74
496 1003 3.676291 ACAAAAATTTGGCGCCTACAT 57.324 38.095 29.70 13.86 42.34 2.29
497 1004 3.324993 ACAAAAATTTGGCGCCTACATG 58.675 40.909 29.70 18.35 42.34 3.21
498 1005 3.244044 ACAAAAATTTGGCGCCTACATGT 60.244 39.130 29.70 18.98 42.34 3.21
499 1006 3.676291 AAAATTTGGCGCCTACATGTT 57.324 38.095 29.70 14.68 0.00 2.71
500 1007 2.652941 AATTTGGCGCCTACATGTTG 57.347 45.000 29.70 0.84 0.00 3.33
501 1008 1.832883 ATTTGGCGCCTACATGTTGA 58.167 45.000 29.70 2.86 0.00 3.18
502 1009 0.878416 TTTGGCGCCTACATGTTGAC 59.122 50.000 29.70 0.00 0.00 3.18
503 1010 0.250510 TTGGCGCCTACATGTTGACA 60.251 50.000 29.70 0.00 0.00 3.58
504 1011 0.035534 TGGCGCCTACATGTTGACAT 60.036 50.000 29.70 0.00 36.96 3.06
505 1012 1.094785 GGCGCCTACATGTTGACATT 58.905 50.000 22.15 0.00 33.61 2.71
506 1013 1.064060 GGCGCCTACATGTTGACATTC 59.936 52.381 22.15 0.00 33.61 2.67
507 1014 2.009774 GCGCCTACATGTTGACATTCT 58.990 47.619 2.30 0.00 33.61 2.40
508 1015 3.194861 GCGCCTACATGTTGACATTCTA 58.805 45.455 2.30 0.00 33.61 2.10
509 1016 3.809832 GCGCCTACATGTTGACATTCTAT 59.190 43.478 2.30 0.00 33.61 1.98
510 1017 4.319046 GCGCCTACATGTTGACATTCTATG 60.319 45.833 2.30 0.00 33.61 2.23
512 1019 5.277011 CGCCTACATGTTGACATTCTATGTG 60.277 44.000 2.30 0.00 45.03 3.21
513 1020 5.504665 GCCTACATGTTGACATTCTATGTGC 60.505 44.000 2.30 0.00 45.03 4.57
514 1021 4.604843 ACATGTTGACATTCTATGTGCG 57.395 40.909 0.00 0.00 45.03 5.34
515 1022 3.181507 ACATGTTGACATTCTATGTGCGC 60.182 43.478 0.00 0.00 45.03 6.09
516 1023 2.421619 TGTTGACATTCTATGTGCGCA 58.578 42.857 5.66 5.66 45.03 6.09
517 1024 2.159430 TGTTGACATTCTATGTGCGCAC 59.841 45.455 33.11 33.11 45.03 5.34
518 1025 0.998669 TGACATTCTATGTGCGCACG 59.001 50.000 33.22 20.49 45.03 5.34
519 1026 0.315382 GACATTCTATGTGCGCACGC 60.315 55.000 33.22 13.71 45.03 5.34
520 1027 1.010797 CATTCTATGTGCGCACGCC 60.011 57.895 33.22 12.92 41.09 5.68
521 1028 1.449423 ATTCTATGTGCGCACGCCA 60.449 52.632 33.22 18.56 41.09 5.69
522 1029 1.024046 ATTCTATGTGCGCACGCCAA 61.024 50.000 33.22 22.76 41.09 4.52
523 1030 1.231296 TTCTATGTGCGCACGCCAAA 61.231 50.000 33.22 21.91 41.09 3.28
524 1031 1.024046 TCTATGTGCGCACGCCAAAT 61.024 50.000 33.22 23.05 41.09 2.32
525 1032 0.179166 CTATGTGCGCACGCCAAATT 60.179 50.000 33.22 14.89 41.09 1.82
526 1033 0.242286 TATGTGCGCACGCCAAATTT 59.758 45.000 33.22 13.60 41.09 1.82
527 1034 1.283613 ATGTGCGCACGCCAAATTTG 61.284 50.000 33.22 11.40 41.09 2.32
539 1046 1.999024 CCAAATTTGGCGGAAAATCGG 59.001 47.619 23.81 0.00 42.21 4.18
548 1055 1.393196 GCGGAAAATCGGCAATTTTGG 59.607 47.619 12.24 6.74 45.47 3.28
552 1059 1.807139 AAATCGGCAATTTTGGTGGC 58.193 45.000 0.00 0.00 33.69 5.01
555 1062 0.037512 TCGGCAATTTTGGTGGCATG 60.038 50.000 0.00 0.00 41.43 4.06
558 1065 1.002315 GGCAATTTTGGTGGCATGTCT 59.998 47.619 0.00 0.00 41.05 3.41
590 1097 8.423353 GACATAAAAATGTCTCGTGAAAAGTC 57.577 34.615 10.51 0.00 45.48 3.01
591 1098 7.360361 ACATAAAAATGTCTCGTGAAAAGTCC 58.640 34.615 0.00 0.00 0.00 3.85
592 1099 7.228706 ACATAAAAATGTCTCGTGAAAAGTCCT 59.771 33.333 0.00 0.00 0.00 3.85
593 1100 6.451064 AAAAATGTCTCGTGAAAAGTCCTT 57.549 33.333 0.00 0.00 0.00 3.36
594 1101 6.451064 AAAATGTCTCGTGAAAAGTCCTTT 57.549 33.333 0.00 0.00 0.00 3.11
595 1102 6.451064 AAATGTCTCGTGAAAAGTCCTTTT 57.549 33.333 4.75 4.75 44.59 2.27
596 1103 7.562454 AAATGTCTCGTGAAAAGTCCTTTTA 57.438 32.000 5.06 0.00 42.26 1.52
597 1104 7.562454 AATGTCTCGTGAAAAGTCCTTTTAA 57.438 32.000 5.06 0.00 42.26 1.52
598 1105 6.354039 TGTCTCGTGAAAAGTCCTTTTAAC 57.646 37.500 9.18 9.18 42.26 2.01
599 1106 5.875910 TGTCTCGTGAAAAGTCCTTTTAACA 59.124 36.000 16.52 5.63 41.72 2.41
600 1107 6.183360 TGTCTCGTGAAAAGTCCTTTTAACAC 60.183 38.462 16.52 13.86 41.72 3.32
601 1108 6.036844 GTCTCGTGAAAAGTCCTTTTAACACT 59.963 38.462 16.52 0.00 41.72 3.55
602 1109 6.036735 TCTCGTGAAAAGTCCTTTTAACACTG 59.963 38.462 16.52 11.82 41.72 3.66
603 1110 5.875910 TCGTGAAAAGTCCTTTTAACACTGA 59.124 36.000 16.52 13.20 41.72 3.41
604 1111 6.036735 TCGTGAAAAGTCCTTTTAACACTGAG 59.963 38.462 16.52 4.16 41.72 3.35
605 1112 6.183360 CGTGAAAAGTCCTTTTAACACTGAGT 60.183 38.462 16.52 0.00 41.72 3.41
606 1113 7.535997 GTGAAAAGTCCTTTTAACACTGAGTT 58.464 34.615 13.00 0.00 41.43 3.01
607 1114 8.027189 GTGAAAAGTCCTTTTAACACTGAGTTT 58.973 33.333 13.00 0.00 41.43 2.66
608 1115 8.581578 TGAAAAGTCCTTTTAACACTGAGTTTT 58.418 29.630 5.06 0.00 42.26 2.43
612 1119 9.628500 AAGTCCTTTTAACACTGAGTTTTATCT 57.372 29.630 0.00 0.00 41.64 1.98
613 1120 9.628500 AGTCCTTTTAACACTGAGTTTTATCTT 57.372 29.630 0.00 0.00 41.64 2.40
622 1129 9.520204 AACACTGAGTTTTATCTTTTTCACATG 57.480 29.630 0.00 0.00 37.03 3.21
623 1130 7.649306 ACACTGAGTTTTATCTTTTTCACATGC 59.351 33.333 0.00 0.00 0.00 4.06
624 1131 6.857964 ACTGAGTTTTATCTTTTTCACATGCG 59.142 34.615 0.00 0.00 0.00 4.73
625 1132 6.964908 TGAGTTTTATCTTTTTCACATGCGA 58.035 32.000 0.00 0.00 0.00 5.10
626 1133 6.855914 TGAGTTTTATCTTTTTCACATGCGAC 59.144 34.615 0.00 0.00 0.00 5.19
627 1134 6.734137 AGTTTTATCTTTTTCACATGCGACA 58.266 32.000 0.00 0.00 0.00 4.35
628 1135 6.636850 AGTTTTATCTTTTTCACATGCGACAC 59.363 34.615 0.00 0.00 0.00 3.67
629 1136 5.681337 TTATCTTTTTCACATGCGACACA 57.319 34.783 0.00 0.00 0.00 3.72
630 1137 4.566545 ATCTTTTTCACATGCGACACAA 57.433 36.364 0.00 0.00 0.00 3.33
631 1138 4.362932 TCTTTTTCACATGCGACACAAA 57.637 36.364 0.00 0.00 0.00 2.83
632 1139 4.738124 TCTTTTTCACATGCGACACAAAA 58.262 34.783 0.00 0.00 0.00 2.44
633 1140 4.797868 TCTTTTTCACATGCGACACAAAAG 59.202 37.500 10.74 10.74 33.12 2.27
634 1141 3.773860 TTTCACATGCGACACAAAAGT 57.226 38.095 0.00 0.00 0.00 2.66
635 1142 3.773860 TTCACATGCGACACAAAAGTT 57.226 38.095 0.00 0.00 0.00 2.66
636 1143 3.063670 TCACATGCGACACAAAAGTTG 57.936 42.857 0.00 0.00 0.00 3.16
637 1144 2.421775 TCACATGCGACACAAAAGTTGT 59.578 40.909 0.00 0.00 46.75 3.32
638 1145 2.783284 CACATGCGACACAAAAGTTGTC 59.217 45.455 0.00 0.00 43.23 3.18
647 1154 6.862944 GACACAAAAGTTGTCGATTTTTCA 57.137 33.333 0.00 0.00 43.23 2.69
648 1155 6.626199 ACACAAAAGTTGTCGATTTTTCAC 57.374 33.333 0.00 0.00 43.23 3.18
649 1156 5.285134 ACACAAAAGTTGTCGATTTTTCACG 59.715 36.000 0.00 0.00 43.23 4.35
650 1157 5.509972 CACAAAAGTTGTCGATTTTTCACGA 59.490 36.000 0.00 0.00 43.23 4.35
651 1158 6.032985 CACAAAAGTTGTCGATTTTTCACGAA 59.967 34.615 0.00 0.00 43.23 3.85
652 1159 6.583050 ACAAAAGTTGTCGATTTTTCACGAAA 59.417 30.769 0.00 0.00 40.56 3.46
653 1160 6.548931 AAAGTTGTCGATTTTTCACGAAAC 57.451 33.333 0.00 0.00 40.12 2.78
654 1161 4.268522 AGTTGTCGATTTTTCACGAAACG 58.731 39.130 0.00 0.00 40.12 3.60
655 1162 4.033129 AGTTGTCGATTTTTCACGAAACGA 59.967 37.500 0.00 0.00 40.12 3.85
656 1163 3.852574 TGTCGATTTTTCACGAAACGAC 58.147 40.909 19.21 19.21 39.96 4.34
657 1164 3.552699 TGTCGATTTTTCACGAAACGACT 59.447 39.130 23.13 1.05 40.06 4.18
658 1165 4.033129 TGTCGATTTTTCACGAAACGACTT 59.967 37.500 23.13 0.00 40.06 3.01
659 1166 4.959757 GTCGATTTTTCACGAAACGACTTT 59.040 37.500 18.95 0.00 40.12 2.66
660 1167 4.959159 TCGATTTTTCACGAAACGACTTTG 59.041 37.500 0.00 0.00 35.62 2.77
661 1168 4.726704 CGATTTTTCACGAAACGACTTTGT 59.273 37.500 0.00 0.00 31.13 2.83
662 1169 5.329768 CGATTTTTCACGAAACGACTTTGTG 60.330 40.000 13.12 13.12 46.96 3.33
666 1173 1.647346 ACGAAACGACTTTGTGAGCA 58.353 45.000 0.00 0.00 29.77 4.26
667 1174 1.326548 ACGAAACGACTTTGTGAGCAC 59.673 47.619 0.00 0.00 29.77 4.40
668 1175 1.653679 CGAAACGACTTTGTGAGCACG 60.654 52.381 0.00 0.00 35.57 5.34
669 1176 1.326548 GAAACGACTTTGTGAGCACGT 59.673 47.619 0.00 0.00 41.17 4.49
670 1177 2.212869 AACGACTTTGTGAGCACGTA 57.787 45.000 0.00 0.00 39.50 3.57
671 1178 1.767289 ACGACTTTGTGAGCACGTAG 58.233 50.000 0.00 0.00 38.96 3.51
672 1179 1.335810 ACGACTTTGTGAGCACGTAGA 59.664 47.619 8.25 0.00 38.96 2.59
673 1180 2.223641 ACGACTTTGTGAGCACGTAGAA 60.224 45.455 8.25 0.00 38.96 2.10
674 1181 2.987149 CGACTTTGTGAGCACGTAGAAT 59.013 45.455 8.25 0.00 0.00 2.40
675 1182 3.181540 CGACTTTGTGAGCACGTAGAATG 60.182 47.826 8.25 0.00 0.00 2.67
676 1183 3.728845 ACTTTGTGAGCACGTAGAATGT 58.271 40.909 8.25 0.00 0.00 2.71
677 1184 4.127171 ACTTTGTGAGCACGTAGAATGTT 58.873 39.130 8.25 0.00 0.00 2.71
678 1185 4.024893 ACTTTGTGAGCACGTAGAATGTTG 60.025 41.667 8.25 0.00 0.00 3.33
679 1186 3.378911 TGTGAGCACGTAGAATGTTGA 57.621 42.857 0.00 0.00 0.00 3.18
680 1187 3.317150 TGTGAGCACGTAGAATGTTGAG 58.683 45.455 0.00 0.00 0.00 3.02
681 1188 3.005367 TGTGAGCACGTAGAATGTTGAGA 59.995 43.478 0.00 0.00 0.00 3.27
682 1189 4.177026 GTGAGCACGTAGAATGTTGAGAT 58.823 43.478 0.00 0.00 0.00 2.75
683 1190 4.032217 GTGAGCACGTAGAATGTTGAGATG 59.968 45.833 0.00 0.00 0.00 2.90
684 1191 4.177026 GAGCACGTAGAATGTTGAGATGT 58.823 43.478 0.00 0.00 0.00 3.06
685 1192 5.105917 TGAGCACGTAGAATGTTGAGATGTA 60.106 40.000 0.00 0.00 0.00 2.29
686 1193 5.103000 AGCACGTAGAATGTTGAGATGTAC 58.897 41.667 0.00 0.00 0.00 2.90
687 1194 4.027621 GCACGTAGAATGTTGAGATGTACG 60.028 45.833 0.00 0.00 38.16 3.67
688 1195 4.027621 CACGTAGAATGTTGAGATGTACGC 60.028 45.833 0.00 0.00 36.19 4.42
689 1196 3.177838 CGTAGAATGTTGAGATGTACGCG 59.822 47.826 3.53 3.53 0.00 6.01
690 1197 3.232213 AGAATGTTGAGATGTACGCGT 57.768 42.857 19.17 19.17 0.00 6.01
691 1198 2.923655 AGAATGTTGAGATGTACGCGTG 59.076 45.455 24.59 0.00 0.00 5.34
692 1199 2.647529 ATGTTGAGATGTACGCGTGA 57.352 45.000 24.59 8.87 0.00 4.35
693 1200 2.425578 TGTTGAGATGTACGCGTGAA 57.574 45.000 24.59 10.43 0.00 3.18
694 1201 2.745102 TGTTGAGATGTACGCGTGAAA 58.255 42.857 24.59 7.48 0.00 2.69
695 1202 3.322369 TGTTGAGATGTACGCGTGAAAT 58.678 40.909 24.59 12.53 0.00 2.17
696 1203 3.743911 TGTTGAGATGTACGCGTGAAATT 59.256 39.130 24.59 4.36 0.00 1.82
697 1204 4.212425 TGTTGAGATGTACGCGTGAAATTT 59.788 37.500 24.59 7.69 0.00 1.82
698 1205 5.144359 GTTGAGATGTACGCGTGAAATTTT 58.856 37.500 24.59 5.30 0.00 1.82
699 1206 5.351233 TGAGATGTACGCGTGAAATTTTT 57.649 34.783 24.59 0.00 0.00 1.94
732 1239 9.974980 AATTTTGTGACATTTCGGTATACTTTT 57.025 25.926 2.25 0.00 0.00 2.27
737 1244 9.881529 TGTGACATTTCGGTATACTTTTAAAAC 57.118 29.630 2.25 0.00 0.00 2.43
738 1245 9.881529 GTGACATTTCGGTATACTTTTAAAACA 57.118 29.630 2.25 0.00 0.00 2.83
739 1246 9.881529 TGACATTTCGGTATACTTTTAAAACAC 57.118 29.630 2.25 0.00 0.00 3.32
740 1247 9.881529 GACATTTCGGTATACTTTTAAAACACA 57.118 29.630 2.25 0.00 0.00 3.72
756 1263 9.810545 TTTAAAACACATTTTAGAAACCAGGAG 57.189 29.630 0.00 0.00 40.51 3.69
757 1264 5.453567 AACACATTTTAGAAACCAGGAGC 57.546 39.130 0.00 0.00 0.00 4.70
758 1265 4.469657 ACACATTTTAGAAACCAGGAGCA 58.530 39.130 0.00 0.00 0.00 4.26
759 1266 5.079643 ACACATTTTAGAAACCAGGAGCAT 58.920 37.500 0.00 0.00 0.00 3.79
760 1267 5.047802 ACACATTTTAGAAACCAGGAGCATG 60.048 40.000 0.00 0.00 0.00 4.06
761 1268 5.047802 CACATTTTAGAAACCAGGAGCATGT 60.048 40.000 0.00 0.00 0.00 3.21
762 1269 6.150976 CACATTTTAGAAACCAGGAGCATGTA 59.849 38.462 0.00 0.00 0.00 2.29
763 1270 6.891908 ACATTTTAGAAACCAGGAGCATGTAT 59.108 34.615 0.00 0.00 0.00 2.29
764 1271 6.757897 TTTTAGAAACCAGGAGCATGTATG 57.242 37.500 0.00 0.00 0.00 2.39
775 1282 2.711711 CATGTATGCTCCTGGGTGC 58.288 57.895 6.72 6.72 35.46 5.01
776 1283 0.820891 CATGTATGCTCCTGGGTGCC 60.821 60.000 10.57 0.00 34.16 5.01
777 1284 1.281199 ATGTATGCTCCTGGGTGCCA 61.281 55.000 10.57 3.16 34.16 4.92
778 1285 1.302949 GTATGCTCCTGGGTGCCAA 59.697 57.895 10.57 0.00 34.16 4.52
779 1286 0.323360 GTATGCTCCTGGGTGCCAAA 60.323 55.000 10.57 0.00 34.16 3.28
780 1287 0.407528 TATGCTCCTGGGTGCCAAAA 59.592 50.000 10.57 0.00 34.16 2.44
781 1288 0.252375 ATGCTCCTGGGTGCCAAAAT 60.252 50.000 10.57 0.00 34.16 1.82
782 1289 1.186917 TGCTCCTGGGTGCCAAAATG 61.187 55.000 10.57 0.00 34.16 2.32
783 1290 1.593265 CTCCTGGGTGCCAAAATGC 59.407 57.895 0.00 0.00 30.80 3.56
784 1291 1.891722 CTCCTGGGTGCCAAAATGCC 61.892 60.000 0.00 0.00 30.80 4.40
785 1292 1.914764 CCTGGGTGCCAAAATGCCT 60.915 57.895 0.00 0.00 30.80 4.75
786 1293 1.593265 CTGGGTGCCAAAATGCCTC 59.407 57.895 0.00 0.00 30.80 4.70
787 1294 0.901580 CTGGGTGCCAAAATGCCTCT 60.902 55.000 0.00 0.00 30.80 3.69
788 1295 0.899717 TGGGTGCCAAAATGCCTCTC 60.900 55.000 0.00 0.00 0.00 3.20
789 1296 0.613012 GGGTGCCAAAATGCCTCTCT 60.613 55.000 0.00 0.00 0.00 3.10
790 1297 0.813821 GGTGCCAAAATGCCTCTCTC 59.186 55.000 0.00 0.00 0.00 3.20
791 1298 1.538047 GTGCCAAAATGCCTCTCTCA 58.462 50.000 0.00 0.00 0.00 3.27
792 1299 1.471684 GTGCCAAAATGCCTCTCTCAG 59.528 52.381 0.00 0.00 0.00 3.35
793 1300 1.074405 TGCCAAAATGCCTCTCTCAGT 59.926 47.619 0.00 0.00 0.00 3.41
794 1301 2.165998 GCCAAAATGCCTCTCTCAGTT 58.834 47.619 0.00 0.00 0.00 3.16
795 1302 2.560105 GCCAAAATGCCTCTCTCAGTTT 59.440 45.455 0.00 0.00 32.80 2.66
796 1303 3.613432 GCCAAAATGCCTCTCTCAGTTTG 60.613 47.826 8.39 8.39 44.33 2.93
797 1304 4.170292 CAAAATGCCTCTCTCAGTTTGG 57.830 45.455 7.70 0.00 42.36 3.28
798 1305 1.831580 AATGCCTCTCTCAGTTTGGC 58.168 50.000 0.00 0.00 43.49 4.52
799 1306 0.034670 ATGCCTCTCTCAGTTTGGCC 60.035 55.000 0.00 0.00 42.62 5.36
800 1307 1.130054 TGCCTCTCTCAGTTTGGCCT 61.130 55.000 3.32 0.00 42.62 5.19
825 1332 6.591750 TTTTTATGAGATTAAAACGGGCCA 57.408 33.333 4.39 0.00 32.33 5.36
827 1334 6.591750 TTTATGAGATTAAAACGGGCCAAA 57.408 33.333 4.39 0.00 0.00 3.28
828 1335 6.591750 TTATGAGATTAAAACGGGCCAAAA 57.408 33.333 4.39 0.00 0.00 2.44
829 1336 5.675684 ATGAGATTAAAACGGGCCAAAAT 57.324 34.783 4.39 0.00 0.00 1.82
830 1337 4.815269 TGAGATTAAAACGGGCCAAAATG 58.185 39.130 4.39 0.00 0.00 2.32
831 1338 4.282195 TGAGATTAAAACGGGCCAAAATGT 59.718 37.500 4.39 0.00 0.00 2.71
832 1339 5.221541 TGAGATTAAAACGGGCCAAAATGTT 60.222 36.000 4.39 0.00 0.00 2.71
833 1340 5.616270 AGATTAAAACGGGCCAAAATGTTT 58.384 33.333 4.39 2.14 36.17 2.83
834 1341 6.058833 AGATTAAAACGGGCCAAAATGTTTT 58.941 32.000 18.74 18.74 44.22 2.43
835 1342 6.544197 AGATTAAAACGGGCCAAAATGTTTTT 59.456 30.769 19.57 7.34 40.52 1.94
836 1343 4.624336 AAAACGGGCCAAAATGTTTTTC 57.376 36.364 4.39 0.00 40.52 2.29
837 1344 2.248280 ACGGGCCAAAATGTTTTTCC 57.752 45.000 4.39 0.00 0.00 3.13
838 1345 1.765904 ACGGGCCAAAATGTTTTTCCT 59.234 42.857 4.39 0.00 0.00 3.36
839 1346 2.171659 ACGGGCCAAAATGTTTTTCCTT 59.828 40.909 4.39 0.00 0.00 3.36
840 1347 2.547634 CGGGCCAAAATGTTTTTCCTTG 59.452 45.455 4.39 0.00 0.00 3.61
841 1348 3.742640 CGGGCCAAAATGTTTTTCCTTGA 60.743 43.478 4.39 0.00 0.00 3.02
842 1349 3.814842 GGGCCAAAATGTTTTTCCTTGAG 59.185 43.478 4.39 0.00 0.00 3.02
843 1350 4.444164 GGGCCAAAATGTTTTTCCTTGAGA 60.444 41.667 4.39 0.00 0.00 3.27
844 1351 5.122519 GGCCAAAATGTTTTTCCTTGAGAA 58.877 37.500 0.00 0.00 0.00 2.87
845 1352 5.588246 GGCCAAAATGTTTTTCCTTGAGAAA 59.412 36.000 0.00 0.00 42.82 2.52
846 1353 6.262944 GGCCAAAATGTTTTTCCTTGAGAAAT 59.737 34.615 0.00 0.00 43.93 2.17
856 1363 1.749063 CCTTGAGAAATAAACGGGCCC 59.251 52.381 13.57 13.57 0.00 5.80
928 1435 3.871594 CCTACACGGATCAGCCTTTAAAG 59.128 47.826 8.32 8.32 33.16 1.85
931 1438 1.282157 ACGGATCAGCCTTTAAAGCCT 59.718 47.619 9.86 0.60 0.00 4.58
990 1527 3.625764 GCAATACCTAGGATCGCACAAAA 59.374 43.478 17.98 0.00 0.00 2.44
1005 1542 0.740737 CAAAATCACCGGAGATGGCC 59.259 55.000 15.53 0.00 0.00 5.36
1089 1626 2.041265 ACCATCCTCTCCCGCCTT 59.959 61.111 0.00 0.00 0.00 4.35
1186 1723 3.031417 AAGGCCGGCAGTATTCGCT 62.031 57.895 30.85 10.59 0.00 4.93
1386 1923 2.370445 CCAGCAGAAGGTCCCGGAT 61.370 63.158 0.73 0.00 0.00 4.18
1442 1979 2.109425 GTGATTAACGGCACCTTCCT 57.891 50.000 0.00 0.00 0.00 3.36
1513 2050 0.100861 GTCCGACGTCAAGATCTCCC 59.899 60.000 17.16 0.00 0.00 4.30
4211 4767 2.357009 GCCATACATCAGCCTTCACAAG 59.643 50.000 0.00 0.00 0.00 3.16
5038 7152 0.458669 ACGATTCGTGCCGTCCTATT 59.541 50.000 11.56 0.00 39.18 1.73
5586 7713 1.815408 GCAACAAGCTTGACTCCTCCA 60.815 52.381 32.50 0.00 41.15 3.86
6469 8597 8.958119 TCTGTTCAGTTTTACAGTTCAATACT 57.042 30.769 0.00 0.00 41.87 2.12
6567 8695 0.443869 CAGCAGGTCGGTCAAAATCG 59.556 55.000 0.00 0.00 0.00 3.34
6672 8804 5.476945 ACCAAGTTCAGGGTAAGCTTAATTG 59.523 40.000 7.99 7.21 35.09 2.32
6717 8849 2.096496 CCTTGCAATCGCTTCCTGTAAG 59.904 50.000 0.00 0.00 39.64 2.34
6727 8859 9.309516 CAATCGCTTCCTGTAAGTACTTAATTA 57.690 33.333 16.82 6.19 37.53 1.40
6728 8860 9.880157 AATCGCTTCCTGTAAGTACTTAATTAA 57.120 29.630 16.82 8.39 37.53 1.40
6881 9013 1.815003 GTTATGCAGCTGCTCAAGGTT 59.185 47.619 36.61 15.95 42.66 3.50
6925 9057 7.921786 TCTACATCAAGGTAAATTGTTCTGG 57.078 36.000 0.00 0.00 0.00 3.86
6942 9074 1.538512 CTGGCTGGTCACTGAATTGTG 59.461 52.381 0.00 0.00 39.15 3.33
6945 9077 3.244875 TGGCTGGTCACTGAATTGTGTAT 60.245 43.478 0.00 0.00 38.90 2.29
6981 9113 1.066716 CCATGTTGTCCCTTGCAATGG 60.067 52.381 14.13 14.13 0.00 3.16
6985 9117 1.818674 GTTGTCCCTTGCAATGGTAGG 59.181 52.381 18.83 7.50 0.00 3.18
6998 9130 0.538516 TGGTAGGCCACGCATGTTTT 60.539 50.000 5.01 0.00 40.46 2.43
6999 9131 0.601057 GGTAGGCCACGCATGTTTTT 59.399 50.000 5.01 0.00 34.09 1.94
7000 9132 1.813786 GGTAGGCCACGCATGTTTTTA 59.186 47.619 5.01 0.00 34.09 1.52
7110 9242 3.770040 TGGGACGTCCTGGCATCG 61.770 66.667 32.52 0.00 36.20 3.84
7486 9619 3.181506 GCATAGAGTTGGCACACTTAAGC 60.182 47.826 1.29 0.00 39.29 3.09
7519 9652 7.908827 TTATTGTGGTTTTCTTATAGCGACA 57.091 32.000 0.00 0.00 0.00 4.35
7597 9730 1.065126 GGCTGAAGCATAGGGAGTTGT 60.065 52.381 4.43 0.00 44.36 3.32
7676 9812 1.225745 GTCAATTTGGCTCGTCGCG 60.226 57.895 0.00 0.00 40.44 5.87
7709 9845 3.536917 CCACCATAGCTCCGCCGA 61.537 66.667 0.00 0.00 0.00 5.54
7731 9867 2.279120 CATCGCCGCCTCTCACTC 60.279 66.667 0.00 0.00 0.00 3.51
7805 9942 8.118976 ACTGTGATTCAAACAAATCAGATCAT 57.881 30.769 0.00 0.00 44.18 2.45
7848 9986 5.304357 GCATAAAATTGTATACAGGGCCCTT 59.696 40.000 26.10 16.65 0.00 3.95
7957 10118 3.884169 TGTTATGAACTTGCAAGCGTTC 58.116 40.909 26.27 22.31 39.85 3.95
7959 10120 4.036262 TGTTATGAACTTGCAAGCGTTCTT 59.964 37.500 26.27 21.18 40.04 2.52
8014 10175 1.523154 GGTGCAACAAATCGCCCAGA 61.523 55.000 0.00 0.00 39.98 3.86
8046 10595 2.993899 GACATGTTTCAGGTCGTAGTGG 59.006 50.000 0.00 0.00 35.55 4.00
8053 10602 0.456221 CAGGTCGTAGTGGTAGCAGG 59.544 60.000 0.00 0.00 0.00 4.85
8054 10603 0.330604 AGGTCGTAGTGGTAGCAGGA 59.669 55.000 0.00 0.00 0.00 3.86
8055 10604 0.739561 GGTCGTAGTGGTAGCAGGAG 59.260 60.000 0.00 0.00 0.00 3.69
8170 10719 4.785453 GCCCTCCTTCCCTGCACG 62.785 72.222 0.00 0.00 0.00 5.34
8179 10728 2.031012 CCCTGCACGAGTCAAGCA 59.969 61.111 6.36 6.36 36.72 3.91
8205 10783 2.024918 CTGAGCCACACGCAAAACT 58.975 52.632 0.00 0.00 41.38 2.66
8246 10824 2.467566 TCTAACGGGAGAAACTTGGC 57.532 50.000 0.00 0.00 0.00 4.52
8254 10832 3.288092 GGGAGAAACTTGGCGGATAATT 58.712 45.455 0.00 0.00 0.00 1.40
8257 10835 4.515567 GGAGAAACTTGGCGGATAATTAGG 59.484 45.833 0.00 0.00 0.00 2.69
8288 10866 1.003118 TGCTAACTGGTCCGCTTGATT 59.997 47.619 0.00 0.00 0.00 2.57
8354 10932 4.009015 GGCCTTCTTTGCCTCCTG 57.991 61.111 0.00 0.00 45.70 3.86
8389 10967 8.084073 AGAAACAACAAAAATGTCATCGATCAT 58.916 29.630 0.00 0.00 0.00 2.45
8407 10985 5.644206 CGATCATCTAAGAGAAGGACGGATA 59.356 44.000 0.00 0.00 0.00 2.59
8410 10988 7.075851 TCATCTAAGAGAAGGACGGATACTA 57.924 40.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.100084 TCACCGCCATGGCCTCAG 62.100 66.667 30.79 18.68 43.94 3.35
8 9 2.615227 AATCTCACCGCCATGGCCTC 62.615 60.000 30.79 4.28 43.94 4.70
14 15 2.124151 GCCCAATCTCACCGCCAT 60.124 61.111 0.00 0.00 0.00 4.40
19 20 0.681243 GGTTCAGGCCCAATCTCACC 60.681 60.000 0.00 0.00 0.00 4.02
23 24 1.604378 CGAGGTTCAGGCCCAATCT 59.396 57.895 0.00 0.00 0.00 2.40
38 39 3.530910 AACCCACCCTTCGTGCGAG 62.531 63.158 0.00 0.00 41.53 5.03
45 46 1.809567 CTTGCTGCAACCCACCCTTC 61.810 60.000 11.69 0.00 0.00 3.46
48 49 3.994853 GCTTGCTGCAACCCACCC 61.995 66.667 11.69 0.00 42.31 4.61
73 74 5.296283 CCCATCTTTCAAGCTATCTGAACTG 59.704 44.000 0.00 0.00 0.00 3.16
79 80 6.666678 TGAATTCCCATCTTTCAAGCTATCT 58.333 36.000 2.27 0.00 0.00 1.98
80 81 6.949352 TGAATTCCCATCTTTCAAGCTATC 57.051 37.500 2.27 0.00 0.00 2.08
87 88 4.823442 CCGATGATGAATTCCCATCTTTCA 59.177 41.667 23.73 9.87 42.49 2.69
88 89 4.823989 ACCGATGATGAATTCCCATCTTTC 59.176 41.667 23.73 13.61 42.49 2.62
91 92 4.564406 GCTACCGATGATGAATTCCCATCT 60.564 45.833 23.73 14.90 42.49 2.90
106 107 4.881273 TCAAATGTTGCATTAGCTACCGAT 59.119 37.500 0.00 0.00 44.30 4.18
107 108 4.094294 GTCAAATGTTGCATTAGCTACCGA 59.906 41.667 0.00 0.00 44.30 4.69
110 111 7.329226 ACAATTGTCAAATGTTGCATTAGCTAC 59.671 33.333 4.92 0.00 45.00 3.58
191 192 4.890088 AGTTCGTTGGCTACTTGATTACA 58.110 39.130 0.00 0.00 0.00 2.41
238 240 4.901849 TCCGGAATCCATCTAGACAGAAAT 59.098 41.667 0.00 0.00 33.50 2.17
239 241 4.286707 TCCGGAATCCATCTAGACAGAAA 58.713 43.478 0.00 0.00 33.50 2.52
269 274 2.734591 GGATAGCACCGCATCCGA 59.265 61.111 0.00 0.00 36.29 4.55
284 289 4.598022 TGTTGCATCATTACAAGATGGGA 58.402 39.130 5.45 0.00 42.38 4.37
315 321 5.502544 CGACAAACTTCTCCTTTGTTCACTC 60.503 44.000 0.00 0.00 41.01 3.51
322 328 5.744666 TTTACCGACAAACTTCTCCTTTG 57.255 39.130 0.00 0.00 35.17 2.77
339 345 4.287720 GCTACAGCAACACACTTTTTACC 58.712 43.478 0.00 0.00 41.59 2.85
355 862 3.896648 AAACGAAACCACATGCTACAG 57.103 42.857 0.00 0.00 0.00 2.74
357 864 3.223157 CGAAAACGAAACCACATGCTAC 58.777 45.455 0.00 0.00 0.00 3.58
362 869 6.392354 TCTATCTACGAAAACGAAACCACAT 58.608 36.000 0.00 0.00 0.00 3.21
363 870 5.771469 TCTATCTACGAAAACGAAACCACA 58.229 37.500 0.00 0.00 0.00 4.17
378 885 5.729974 ATTTCCGCGGTTTTTCTATCTAC 57.270 39.130 27.15 0.00 0.00 2.59
379 886 5.875910 TGAATTTCCGCGGTTTTTCTATCTA 59.124 36.000 27.15 7.21 0.00 1.98
380 887 4.698304 TGAATTTCCGCGGTTTTTCTATCT 59.302 37.500 27.15 0.00 0.00 1.98
381 888 4.976987 TGAATTTCCGCGGTTTTTCTATC 58.023 39.130 27.15 13.66 0.00 2.08
382 889 5.576447 ATGAATTTCCGCGGTTTTTCTAT 57.424 34.783 27.15 16.60 0.00 1.98
383 890 5.379732 AATGAATTTCCGCGGTTTTTCTA 57.620 34.783 27.15 15.33 0.00 2.10
384 891 3.934457 ATGAATTTCCGCGGTTTTTCT 57.066 38.095 27.15 12.31 0.00 2.52
385 892 4.983215 AAATGAATTTCCGCGGTTTTTC 57.017 36.364 27.15 23.54 0.00 2.29
386 893 5.743026 AAAAATGAATTTCCGCGGTTTTT 57.257 30.435 27.15 23.21 0.00 1.94
406 913 2.121291 TATGCTCCCATGTGCGAAAA 57.879 45.000 0.00 0.00 33.71 2.29
407 914 1.948834 CATATGCTCCCATGTGCGAAA 59.051 47.619 0.00 0.00 34.49 3.46
421 928 2.256591 CGGTGGCAGGAGCATATGC 61.257 63.158 20.36 20.36 44.61 3.14
422 929 1.598962 CCGGTGGCAGGAGCATATG 60.599 63.158 0.00 0.00 44.61 1.78
423 930 0.762842 TACCGGTGGCAGGAGCATAT 60.763 55.000 19.93 0.00 44.61 1.78
424 931 0.762842 ATACCGGTGGCAGGAGCATA 60.763 55.000 19.93 0.00 44.61 3.14
425 932 2.072487 ATACCGGTGGCAGGAGCAT 61.072 57.895 19.93 0.00 44.61 3.79
426 933 2.687200 ATACCGGTGGCAGGAGCA 60.687 61.111 19.93 0.00 44.61 4.26
427 934 2.203070 CATACCGGTGGCAGGAGC 60.203 66.667 19.93 0.00 41.10 4.70
428 935 0.251916 TTTCATACCGGTGGCAGGAG 59.748 55.000 19.93 0.00 0.00 3.69
429 936 0.693622 TTTTCATACCGGTGGCAGGA 59.306 50.000 19.93 0.60 0.00 3.86
430 937 1.540267 TTTTTCATACCGGTGGCAGG 58.460 50.000 19.93 0.00 0.00 4.85
431 938 4.974368 TTATTTTTCATACCGGTGGCAG 57.026 40.909 19.93 4.07 0.00 4.85
432 939 5.419155 TGAATTATTTTTCATACCGGTGGCA 59.581 36.000 19.93 0.00 30.82 4.92
433 940 5.897050 TGAATTATTTTTCATACCGGTGGC 58.103 37.500 19.93 0.00 30.82 5.01
434 941 8.764524 TTTTGAATTATTTTTCATACCGGTGG 57.235 30.769 19.93 9.82 35.64 4.61
436 943 9.936759 ACATTTTGAATTATTTTTCATACCGGT 57.063 25.926 13.98 13.98 35.64 5.28
449 956 9.757227 TCGGAACTTTTTGACATTTTGAATTAT 57.243 25.926 0.00 0.00 0.00 1.28
450 957 9.587772 TTCGGAACTTTTTGACATTTTGAATTA 57.412 25.926 0.00 0.00 0.00 1.40
451 958 8.387354 GTTCGGAACTTTTTGACATTTTGAATT 58.613 29.630 13.49 0.00 0.00 2.17
452 959 7.547370 TGTTCGGAACTTTTTGACATTTTGAAT 59.453 29.630 20.53 0.00 0.00 2.57
453 960 6.868864 TGTTCGGAACTTTTTGACATTTTGAA 59.131 30.769 20.53 0.00 0.00 2.69
454 961 6.390721 TGTTCGGAACTTTTTGACATTTTGA 58.609 32.000 20.53 0.00 0.00 2.69
455 962 6.639671 TGTTCGGAACTTTTTGACATTTTG 57.360 33.333 20.53 0.00 0.00 2.44
456 963 7.659652 TTTGTTCGGAACTTTTTGACATTTT 57.340 28.000 20.53 0.00 0.00 1.82
457 964 7.659652 TTTTGTTCGGAACTTTTTGACATTT 57.340 28.000 20.53 0.00 0.00 2.32
458 965 7.659652 TTTTTGTTCGGAACTTTTTGACATT 57.340 28.000 20.53 0.00 0.00 2.71
459 966 7.841915 ATTTTTGTTCGGAACTTTTTGACAT 57.158 28.000 20.53 1.52 0.00 3.06
460 967 7.659652 AATTTTTGTTCGGAACTTTTTGACA 57.340 28.000 20.53 0.00 0.00 3.58
461 968 7.480229 CCAAATTTTTGTTCGGAACTTTTTGAC 59.520 33.333 20.53 0.00 36.45 3.18
462 969 7.522374 CCAAATTTTTGTTCGGAACTTTTTGA 58.478 30.769 20.53 4.09 36.45 2.69
463 970 6.250315 GCCAAATTTTTGTTCGGAACTTTTTG 59.750 34.615 20.53 18.57 36.45 2.44
464 971 6.318628 GCCAAATTTTTGTTCGGAACTTTTT 58.681 32.000 20.53 10.47 36.45 1.94
465 972 5.446607 CGCCAAATTTTTGTTCGGAACTTTT 60.447 36.000 20.53 10.19 36.45 2.27
466 973 4.033472 CGCCAAATTTTTGTTCGGAACTTT 59.967 37.500 20.53 10.13 36.45 2.66
467 974 3.553917 CGCCAAATTTTTGTTCGGAACTT 59.446 39.130 20.53 4.66 36.45 2.66
468 975 3.120041 CGCCAAATTTTTGTTCGGAACT 58.880 40.909 20.53 0.00 36.45 3.01
469 976 2.348125 GCGCCAAATTTTTGTTCGGAAC 60.348 45.455 13.86 13.86 36.45 3.62
470 977 1.861575 GCGCCAAATTTTTGTTCGGAA 59.138 42.857 0.00 0.00 36.45 4.30
471 978 1.492720 GCGCCAAATTTTTGTTCGGA 58.507 45.000 0.00 0.00 36.45 4.55
472 979 0.510790 GGCGCCAAATTTTTGTTCGG 59.489 50.000 24.80 0.00 36.45 4.30
473 980 1.496934 AGGCGCCAAATTTTTGTTCG 58.503 45.000 31.54 6.47 36.45 3.95
474 981 3.385577 TGTAGGCGCCAAATTTTTGTTC 58.614 40.909 31.54 2.40 36.45 3.18
475 982 3.460857 TGTAGGCGCCAAATTTTTGTT 57.539 38.095 31.54 5.89 36.45 2.83
476 983 3.244044 ACATGTAGGCGCCAAATTTTTGT 60.244 39.130 31.54 18.46 36.45 2.83
477 984 3.324993 ACATGTAGGCGCCAAATTTTTG 58.675 40.909 31.54 17.81 37.90 2.44
478 985 3.676291 ACATGTAGGCGCCAAATTTTT 57.324 38.095 31.54 8.51 0.00 1.94
479 986 3.006323 TCAACATGTAGGCGCCAAATTTT 59.994 39.130 31.54 14.73 0.00 1.82
480 987 2.560542 TCAACATGTAGGCGCCAAATTT 59.439 40.909 31.54 10.27 0.00 1.82
481 988 2.094752 GTCAACATGTAGGCGCCAAATT 60.095 45.455 31.54 10.73 0.00 1.82
482 989 1.472480 GTCAACATGTAGGCGCCAAAT 59.528 47.619 31.54 16.09 0.00 2.32
483 990 0.878416 GTCAACATGTAGGCGCCAAA 59.122 50.000 31.54 14.16 0.00 3.28
484 991 0.250510 TGTCAACATGTAGGCGCCAA 60.251 50.000 31.54 14.66 0.00 4.52
485 992 0.035534 ATGTCAACATGTAGGCGCCA 60.036 50.000 31.54 12.31 34.83 5.69
486 993 1.064060 GAATGTCAACATGTAGGCGCC 59.936 52.381 21.89 21.89 36.56 6.53
487 994 2.009774 AGAATGTCAACATGTAGGCGC 58.990 47.619 0.00 0.00 36.56 6.53
488 995 4.811024 ACATAGAATGTCAACATGTAGGCG 59.189 41.667 0.00 0.00 39.92 5.52
489 996 5.504665 GCACATAGAATGTCAACATGTAGGC 60.505 44.000 0.00 0.00 42.70 3.93
490 997 5.277011 CGCACATAGAATGTCAACATGTAGG 60.277 44.000 0.00 0.00 42.70 3.18
491 998 5.731278 CGCACATAGAATGTCAACATGTAG 58.269 41.667 0.00 0.00 42.70 2.74
492 999 4.033932 GCGCACATAGAATGTCAACATGTA 59.966 41.667 0.30 0.00 42.70 2.29
493 1000 3.181507 GCGCACATAGAATGTCAACATGT 60.182 43.478 0.30 0.00 42.70 3.21
494 1001 3.181508 TGCGCACATAGAATGTCAACATG 60.182 43.478 5.66 0.00 42.70 3.21
495 1002 3.009026 TGCGCACATAGAATGTCAACAT 58.991 40.909 5.66 0.00 42.70 2.71
496 1003 2.159430 GTGCGCACATAGAATGTCAACA 59.841 45.455 34.52 0.00 42.70 3.33
497 1004 2.774007 GTGCGCACATAGAATGTCAAC 58.226 47.619 34.52 1.97 42.70 3.18
498 1005 1.393196 CGTGCGCACATAGAATGTCAA 59.607 47.619 37.03 0.00 42.70 3.18
499 1006 0.998669 CGTGCGCACATAGAATGTCA 59.001 50.000 37.03 0.00 42.70 3.58
500 1007 0.315382 GCGTGCGCACATAGAATGTC 60.315 55.000 37.03 13.14 42.70 3.06
501 1008 1.705337 GGCGTGCGCACATAGAATGT 61.705 55.000 37.03 0.00 46.22 2.71
502 1009 1.010797 GGCGTGCGCACATAGAATG 60.011 57.895 37.03 21.20 44.11 2.67
503 1010 1.024046 TTGGCGTGCGCACATAGAAT 61.024 50.000 37.03 0.00 44.11 2.40
504 1011 1.231296 TTTGGCGTGCGCACATAGAA 61.231 50.000 37.03 23.12 44.11 2.10
505 1012 1.024046 ATTTGGCGTGCGCACATAGA 61.024 50.000 37.03 20.00 44.11 1.98
506 1013 0.179166 AATTTGGCGTGCGCACATAG 60.179 50.000 37.03 23.34 44.11 2.23
507 1014 0.242286 AAATTTGGCGTGCGCACATA 59.758 45.000 37.03 21.03 44.11 2.29
508 1015 1.006337 AAATTTGGCGTGCGCACAT 60.006 47.368 37.03 21.43 44.11 3.21
509 1016 1.948138 CAAATTTGGCGTGCGCACA 60.948 52.632 37.03 20.07 44.11 4.57
510 1017 2.656807 CCAAATTTGGCGTGCGCAC 61.657 57.895 30.42 30.42 42.21 5.34
511 1018 2.355599 CCAAATTTGGCGTGCGCA 60.356 55.556 23.81 5.66 42.21 6.09
520 1027 1.393196 GCCGATTTTCCGCCAAATTTG 59.607 47.619 11.40 11.40 0.00 2.32
521 1028 1.001406 TGCCGATTTTCCGCCAAATTT 59.999 42.857 0.00 0.00 0.00 1.82
522 1029 0.605589 TGCCGATTTTCCGCCAAATT 59.394 45.000 0.00 0.00 0.00 1.82
523 1030 0.605589 TTGCCGATTTTCCGCCAAAT 59.394 45.000 0.00 0.00 0.00 2.32
524 1031 0.605589 ATTGCCGATTTTCCGCCAAA 59.394 45.000 0.00 0.00 30.80 3.28
525 1032 0.605589 AATTGCCGATTTTCCGCCAA 59.394 45.000 0.00 0.00 31.56 4.52
526 1033 0.605589 AAATTGCCGATTTTCCGCCA 59.394 45.000 0.00 0.00 34.27 5.69
527 1034 1.393196 CAAAATTGCCGATTTTCCGCC 59.607 47.619 0.00 0.00 44.16 6.13
528 1035 1.393196 CCAAAATTGCCGATTTTCCGC 59.607 47.619 0.00 0.00 44.16 5.54
529 1036 2.411409 CACCAAAATTGCCGATTTTCCG 59.589 45.455 0.00 0.00 44.16 4.30
530 1037 2.741517 CCACCAAAATTGCCGATTTTCC 59.258 45.455 0.00 0.00 44.16 3.13
531 1038 2.159430 GCCACCAAAATTGCCGATTTTC 59.841 45.455 0.00 0.00 44.16 2.29
532 1039 2.150390 GCCACCAAAATTGCCGATTTT 58.850 42.857 0.00 0.00 46.29 1.82
533 1040 1.071385 TGCCACCAAAATTGCCGATTT 59.929 42.857 0.00 0.00 39.63 2.17
534 1041 0.683973 TGCCACCAAAATTGCCGATT 59.316 45.000 0.00 0.00 0.00 3.34
535 1042 0.903942 ATGCCACCAAAATTGCCGAT 59.096 45.000 0.00 0.00 0.00 4.18
536 1043 0.037512 CATGCCACCAAAATTGCCGA 60.038 50.000 0.00 0.00 0.00 5.54
537 1044 0.320596 ACATGCCACCAAAATTGCCG 60.321 50.000 0.00 0.00 0.00 5.69
538 1045 1.002315 AGACATGCCACCAAAATTGCC 59.998 47.619 0.00 0.00 0.00 4.52
539 1046 2.460757 AGACATGCCACCAAAATTGC 57.539 45.000 0.00 0.00 0.00 3.56
540 1047 6.857777 TTTTTAGACATGCCACCAAAATTG 57.142 33.333 0.00 0.00 0.00 2.32
566 1073 7.228706 AGGACTTTTCACGAGACATTTTTATGT 59.771 33.333 0.00 0.00 37.50 2.29
567 1074 7.584987 AGGACTTTTCACGAGACATTTTTATG 58.415 34.615 0.00 0.00 0.00 1.90
568 1075 7.745620 AGGACTTTTCACGAGACATTTTTAT 57.254 32.000 0.00 0.00 0.00 1.40
569 1076 7.562454 AAGGACTTTTCACGAGACATTTTTA 57.438 32.000 0.00 0.00 0.00 1.52
570 1077 6.451064 AAGGACTTTTCACGAGACATTTTT 57.549 33.333 0.00 0.00 0.00 1.94
571 1078 6.451064 AAAGGACTTTTCACGAGACATTTT 57.549 33.333 0.00 0.00 0.00 1.82
572 1079 6.451064 AAAAGGACTTTTCACGAGACATTT 57.549 33.333 4.29 0.00 38.27 2.32
573 1080 7.066525 TGTTAAAAGGACTTTTCACGAGACATT 59.933 33.333 12.84 0.00 41.39 2.71
574 1081 6.540914 TGTTAAAAGGACTTTTCACGAGACAT 59.459 34.615 12.84 0.00 41.39 3.06
575 1082 5.875910 TGTTAAAAGGACTTTTCACGAGACA 59.124 36.000 12.84 7.60 41.39 3.41
576 1083 6.036844 AGTGTTAAAAGGACTTTTCACGAGAC 59.963 38.462 12.84 7.66 41.39 3.36
577 1084 6.036735 CAGTGTTAAAAGGACTTTTCACGAGA 59.963 38.462 12.84 0.00 41.39 4.04
578 1085 6.036735 TCAGTGTTAAAAGGACTTTTCACGAG 59.963 38.462 12.84 12.81 41.39 4.18
579 1086 5.875910 TCAGTGTTAAAAGGACTTTTCACGA 59.124 36.000 12.84 13.10 41.39 4.35
580 1087 6.114221 TCAGTGTTAAAAGGACTTTTCACG 57.886 37.500 12.84 11.56 41.39 4.35
581 1088 7.085052 ACTCAGTGTTAAAAGGACTTTTCAC 57.915 36.000 12.84 14.60 41.39 3.18
582 1089 7.696992 AACTCAGTGTTAAAAGGACTTTTCA 57.303 32.000 12.84 4.43 41.39 2.69
583 1090 8.981724 AAAACTCAGTGTTAAAAGGACTTTTC 57.018 30.769 12.84 2.01 41.39 2.29
586 1093 9.628500 AGATAAAACTCAGTGTTAAAAGGACTT 57.372 29.630 0.00 0.00 38.03 3.01
587 1094 9.628500 AAGATAAAACTCAGTGTTAAAAGGACT 57.372 29.630 0.00 0.00 38.03 3.85
596 1103 9.520204 CATGTGAAAAAGATAAAACTCAGTGTT 57.480 29.630 0.00 0.00 41.29 3.32
597 1104 7.649306 GCATGTGAAAAAGATAAAACTCAGTGT 59.351 33.333 0.00 0.00 0.00 3.55
598 1105 7.149080 CGCATGTGAAAAAGATAAAACTCAGTG 60.149 37.037 0.00 0.00 0.00 3.66
599 1106 6.857964 CGCATGTGAAAAAGATAAAACTCAGT 59.142 34.615 0.00 0.00 0.00 3.41
600 1107 7.059945 GTCGCATGTGAAAAAGATAAAACTCAG 59.940 37.037 11.25 0.00 0.00 3.35
601 1108 6.855914 GTCGCATGTGAAAAAGATAAAACTCA 59.144 34.615 11.25 0.00 0.00 3.41
602 1109 6.855914 TGTCGCATGTGAAAAAGATAAAACTC 59.144 34.615 11.25 0.00 0.00 3.01
603 1110 6.636850 GTGTCGCATGTGAAAAAGATAAAACT 59.363 34.615 11.25 0.00 0.00 2.66
604 1111 6.416455 TGTGTCGCATGTGAAAAAGATAAAAC 59.584 34.615 11.25 0.00 0.00 2.43
605 1112 6.499172 TGTGTCGCATGTGAAAAAGATAAAA 58.501 32.000 11.25 0.00 0.00 1.52
606 1113 6.066054 TGTGTCGCATGTGAAAAAGATAAA 57.934 33.333 11.25 0.00 0.00 1.40
607 1114 5.681337 TGTGTCGCATGTGAAAAAGATAA 57.319 34.783 11.25 0.00 0.00 1.75
608 1115 5.681337 TTGTGTCGCATGTGAAAAAGATA 57.319 34.783 11.25 0.00 0.00 1.98
609 1116 4.566545 TTGTGTCGCATGTGAAAAAGAT 57.433 36.364 11.25 0.00 0.00 2.40
610 1117 4.362932 TTTGTGTCGCATGTGAAAAAGA 57.637 36.364 11.25 0.00 0.00 2.52
611 1118 4.562394 ACTTTTGTGTCGCATGTGAAAAAG 59.438 37.500 27.46 27.46 38.49 2.27
612 1119 4.489810 ACTTTTGTGTCGCATGTGAAAAA 58.510 34.783 11.25 12.85 0.00 1.94
613 1120 4.103365 ACTTTTGTGTCGCATGTGAAAA 57.897 36.364 11.25 5.53 0.00 2.29
614 1121 3.773860 ACTTTTGTGTCGCATGTGAAA 57.226 38.095 11.25 1.88 0.00 2.69
615 1122 3.119673 ACAACTTTTGTGTCGCATGTGAA 60.120 39.130 11.25 0.00 43.48 3.18
616 1123 2.421775 ACAACTTTTGTGTCGCATGTGA 59.578 40.909 4.45 4.45 43.48 3.58
617 1124 2.783284 GACAACTTTTGTGTCGCATGTG 59.217 45.455 0.00 0.00 45.52 3.21
618 1125 2.538737 CGACAACTTTTGTGTCGCATGT 60.539 45.455 13.26 0.00 45.52 3.21
619 1126 2.036217 CGACAACTTTTGTGTCGCATG 58.964 47.619 13.26 0.00 45.52 4.06
620 1127 1.937223 TCGACAACTTTTGTGTCGCAT 59.063 42.857 19.20 0.00 45.52 4.73
621 1128 1.360820 TCGACAACTTTTGTGTCGCA 58.639 45.000 19.20 8.10 45.52 5.10
622 1129 2.663279 ATCGACAACTTTTGTGTCGC 57.337 45.000 19.20 0.00 45.52 5.19
623 1130 5.509972 TGAAAAATCGACAACTTTTGTGTCG 59.490 36.000 18.22 18.22 45.52 4.35
624 1131 6.504180 CGTGAAAAATCGACAACTTTTGTGTC 60.504 38.462 0.00 0.00 45.52 3.67
625 1132 5.285134 CGTGAAAAATCGACAACTTTTGTGT 59.715 36.000 0.00 0.00 45.52 3.72
626 1133 5.509972 TCGTGAAAAATCGACAACTTTTGTG 59.490 36.000 0.00 0.00 45.52 3.33
627 1134 7.409980 GTTTCGTGAAAAATCGACAACTTTTGT 60.410 33.333 0.00 0.00 38.15 2.83
628 1135 6.547493 TTCGTGAAAAATCGACAACTTTTG 57.453 33.333 0.00 0.00 35.82 2.44
629 1136 6.237097 CGTTTCGTGAAAAATCGACAACTTTT 60.237 34.615 0.00 0.00 35.82 2.27
630 1137 5.226360 CGTTTCGTGAAAAATCGACAACTTT 59.774 36.000 0.00 0.00 35.82 2.66
631 1138 4.726704 CGTTTCGTGAAAAATCGACAACTT 59.273 37.500 0.00 0.00 35.82 2.66
632 1139 4.033129 TCGTTTCGTGAAAAATCGACAACT 59.967 37.500 0.00 0.00 35.82 3.16
633 1140 4.141861 GTCGTTTCGTGAAAAATCGACAAC 59.858 41.667 21.75 5.72 39.56 3.32
634 1141 4.033129 AGTCGTTTCGTGAAAAATCGACAA 59.967 37.500 25.35 1.82 40.70 3.18
635 1142 3.552699 AGTCGTTTCGTGAAAAATCGACA 59.447 39.130 25.35 2.34 40.70 4.35
636 1143 4.111489 AGTCGTTTCGTGAAAAATCGAC 57.889 40.909 20.27 20.27 39.78 4.20
637 1144 4.782252 AAGTCGTTTCGTGAAAAATCGA 57.218 36.364 0.00 0.03 31.33 3.59
638 1145 4.726704 ACAAAGTCGTTTCGTGAAAAATCG 59.273 37.500 0.00 0.00 31.33 3.34
639 1146 5.735427 TCACAAAGTCGTTTCGTGAAAAATC 59.265 36.000 0.00 0.00 34.03 2.17
640 1147 5.632959 TCACAAAGTCGTTTCGTGAAAAAT 58.367 33.333 0.00 0.00 34.03 1.82
641 1148 5.032100 TCACAAAGTCGTTTCGTGAAAAA 57.968 34.783 0.00 0.00 34.03 1.94
642 1149 4.643953 CTCACAAAGTCGTTTCGTGAAAA 58.356 39.130 0.00 0.00 35.32 2.29
643 1150 3.484557 GCTCACAAAGTCGTTTCGTGAAA 60.485 43.478 0.00 0.00 35.32 2.69
644 1151 2.029970 GCTCACAAAGTCGTTTCGTGAA 59.970 45.455 0.00 0.00 35.32 3.18
645 1152 1.591158 GCTCACAAAGTCGTTTCGTGA 59.409 47.619 0.00 0.00 34.91 4.35
646 1153 1.326245 TGCTCACAAAGTCGTTTCGTG 59.674 47.619 0.00 0.00 0.00 4.35
647 1154 1.326548 GTGCTCACAAAGTCGTTTCGT 59.673 47.619 0.00 0.00 0.00 3.85
648 1155 1.653679 CGTGCTCACAAAGTCGTTTCG 60.654 52.381 0.69 0.00 0.00 3.46
649 1156 1.326548 ACGTGCTCACAAAGTCGTTTC 59.673 47.619 0.00 0.00 35.41 2.78
650 1157 1.365699 ACGTGCTCACAAAGTCGTTT 58.634 45.000 0.00 0.00 35.41 3.60
651 1158 2.124903 CTACGTGCTCACAAAGTCGTT 58.875 47.619 0.00 0.00 38.16 3.85
652 1159 1.335810 TCTACGTGCTCACAAAGTCGT 59.664 47.619 0.00 0.00 39.53 4.34
653 1160 2.046283 TCTACGTGCTCACAAAGTCG 57.954 50.000 0.00 0.00 0.00 4.18
654 1161 3.741344 ACATTCTACGTGCTCACAAAGTC 59.259 43.478 0.00 0.00 0.00 3.01
655 1162 3.728845 ACATTCTACGTGCTCACAAAGT 58.271 40.909 0.00 0.00 0.00 2.66
656 1163 4.211164 TCAACATTCTACGTGCTCACAAAG 59.789 41.667 0.00 0.00 0.00 2.77
657 1164 4.123506 TCAACATTCTACGTGCTCACAAA 58.876 39.130 0.00 0.00 0.00 2.83
658 1165 3.723260 TCAACATTCTACGTGCTCACAA 58.277 40.909 0.00 0.00 0.00 3.33
659 1166 3.005367 TCTCAACATTCTACGTGCTCACA 59.995 43.478 0.00 0.00 0.00 3.58
660 1167 3.575630 TCTCAACATTCTACGTGCTCAC 58.424 45.455 0.00 0.00 0.00 3.51
661 1168 3.934457 TCTCAACATTCTACGTGCTCA 57.066 42.857 0.00 0.00 0.00 4.26
662 1169 4.177026 ACATCTCAACATTCTACGTGCTC 58.823 43.478 0.00 0.00 0.00 4.26
663 1170 4.193826 ACATCTCAACATTCTACGTGCT 57.806 40.909 0.00 0.00 0.00 4.40
664 1171 4.027621 CGTACATCTCAACATTCTACGTGC 60.028 45.833 0.00 0.00 0.00 5.34
665 1172 4.027621 GCGTACATCTCAACATTCTACGTG 60.028 45.833 0.00 0.00 0.00 4.49
666 1173 4.103357 GCGTACATCTCAACATTCTACGT 58.897 43.478 0.00 0.00 0.00 3.57
667 1174 3.177838 CGCGTACATCTCAACATTCTACG 59.822 47.826 0.00 0.00 0.00 3.51
668 1175 4.027621 CACGCGTACATCTCAACATTCTAC 60.028 45.833 13.44 0.00 0.00 2.59
669 1176 4.102649 CACGCGTACATCTCAACATTCTA 58.897 43.478 13.44 0.00 0.00 2.10
670 1177 2.923655 CACGCGTACATCTCAACATTCT 59.076 45.455 13.44 0.00 0.00 2.40
671 1178 2.921121 TCACGCGTACATCTCAACATTC 59.079 45.455 13.44 0.00 0.00 2.67
672 1179 2.954316 TCACGCGTACATCTCAACATT 58.046 42.857 13.44 0.00 0.00 2.71
673 1180 2.647529 TCACGCGTACATCTCAACAT 57.352 45.000 13.44 0.00 0.00 2.71
674 1181 2.425578 TTCACGCGTACATCTCAACA 57.574 45.000 13.44 0.00 0.00 3.33
675 1182 3.991605 ATTTCACGCGTACATCTCAAC 57.008 42.857 13.44 0.00 0.00 3.18
676 1183 5.351233 AAAATTTCACGCGTACATCTCAA 57.649 34.783 13.44 0.00 0.00 3.02
677 1184 5.351233 AAAAATTTCACGCGTACATCTCA 57.649 34.783 13.44 0.00 0.00 3.27
706 1213 9.974980 AAAAGTATACCGAAATGTCACAAAATT 57.025 25.926 0.00 0.00 0.00 1.82
711 1218 9.881529 GTTTTAAAAGTATACCGAAATGTCACA 57.118 29.630 0.00 0.00 0.00 3.58
712 1219 9.881529 TGTTTTAAAAGTATACCGAAATGTCAC 57.118 29.630 0.00 0.00 0.00 3.67
713 1220 9.881529 GTGTTTTAAAAGTATACCGAAATGTCA 57.118 29.630 0.00 0.00 0.00 3.58
714 1221 9.881529 TGTGTTTTAAAAGTATACCGAAATGTC 57.118 29.630 0.00 0.00 0.00 3.06
730 1237 9.810545 CTCCTGGTTTCTAAAATGTGTTTTAAA 57.189 29.630 0.00 0.00 38.82 1.52
731 1238 7.923878 GCTCCTGGTTTCTAAAATGTGTTTTAA 59.076 33.333 0.00 0.00 38.82 1.52
732 1239 7.068839 TGCTCCTGGTTTCTAAAATGTGTTTTA 59.931 33.333 0.00 0.00 38.44 1.52
733 1240 6.127196 TGCTCCTGGTTTCTAAAATGTGTTTT 60.127 34.615 0.00 0.00 40.48 2.43
734 1241 5.362430 TGCTCCTGGTTTCTAAAATGTGTTT 59.638 36.000 0.00 0.00 0.00 2.83
735 1242 4.892934 TGCTCCTGGTTTCTAAAATGTGTT 59.107 37.500 0.00 0.00 0.00 3.32
736 1243 4.469657 TGCTCCTGGTTTCTAAAATGTGT 58.530 39.130 0.00 0.00 0.00 3.72
737 1244 5.047802 ACATGCTCCTGGTTTCTAAAATGTG 60.048 40.000 0.00 0.00 0.00 3.21
738 1245 5.079643 ACATGCTCCTGGTTTCTAAAATGT 58.920 37.500 0.00 0.00 0.00 2.71
739 1246 5.649782 ACATGCTCCTGGTTTCTAAAATG 57.350 39.130 0.00 0.00 0.00 2.32
740 1247 7.338800 CATACATGCTCCTGGTTTCTAAAAT 57.661 36.000 0.00 0.00 0.00 1.82
741 1248 6.757897 CATACATGCTCCTGGTTTCTAAAA 57.242 37.500 0.00 0.00 0.00 1.52
757 1264 0.820891 GGCACCCAGGAGCATACATG 60.821 60.000 8.40 0.00 33.44 3.21
758 1265 1.281199 TGGCACCCAGGAGCATACAT 61.281 55.000 8.40 0.00 33.44 2.29
759 1266 1.496444 TTGGCACCCAGGAGCATACA 61.496 55.000 8.40 0.00 33.81 2.29
760 1267 0.323360 TTTGGCACCCAGGAGCATAC 60.323 55.000 8.40 0.00 33.81 2.39
761 1268 0.407528 TTTTGGCACCCAGGAGCATA 59.592 50.000 8.40 0.00 33.81 3.14
762 1269 0.252375 ATTTTGGCACCCAGGAGCAT 60.252 50.000 8.40 0.00 33.81 3.79
763 1270 1.155859 ATTTTGGCACCCAGGAGCA 59.844 52.632 8.40 0.00 33.81 4.26
764 1271 1.593265 CATTTTGGCACCCAGGAGC 59.407 57.895 0.00 0.00 33.81 4.70
765 1272 1.593265 GCATTTTGGCACCCAGGAG 59.407 57.895 0.00 0.00 33.81 3.69
766 1273 1.912763 GGCATTTTGGCACCCAGGA 60.913 57.895 0.00 0.00 43.14 3.86
767 1274 1.891722 GAGGCATTTTGGCACCCAGG 61.892 60.000 3.81 0.00 46.46 4.45
768 1275 0.901580 AGAGGCATTTTGGCACCCAG 60.902 55.000 3.81 0.00 46.46 4.45
769 1276 0.899717 GAGAGGCATTTTGGCACCCA 60.900 55.000 3.81 0.00 46.46 4.51
770 1277 0.613012 AGAGAGGCATTTTGGCACCC 60.613 55.000 3.81 0.00 46.46 4.61
771 1278 0.813821 GAGAGAGGCATTTTGGCACC 59.186 55.000 3.81 0.00 46.46 5.01
772 1279 1.471684 CTGAGAGAGGCATTTTGGCAC 59.528 52.381 3.81 0.00 46.46 5.01
773 1280 1.074405 ACTGAGAGAGGCATTTTGGCA 59.926 47.619 3.81 0.00 46.46 4.92
774 1281 1.831580 ACTGAGAGAGGCATTTTGGC 58.168 50.000 0.00 0.00 44.10 4.52
775 1282 3.057033 CCAAACTGAGAGAGGCATTTTGG 60.057 47.826 9.88 9.88 44.25 3.28
776 1283 3.613432 GCCAAACTGAGAGAGGCATTTTG 60.613 47.826 8.44 0.00 44.59 2.44
777 1284 2.560105 GCCAAACTGAGAGAGGCATTTT 59.440 45.455 8.44 0.00 44.59 1.82
778 1285 2.165998 GCCAAACTGAGAGAGGCATTT 58.834 47.619 8.44 0.00 44.59 2.32
779 1286 1.615384 GGCCAAACTGAGAGAGGCATT 60.615 52.381 13.62 0.00 46.96 3.56
780 1287 0.034670 GGCCAAACTGAGAGAGGCAT 60.035 55.000 13.62 0.00 46.96 4.40
781 1288 1.130054 AGGCCAAACTGAGAGAGGCA 61.130 55.000 5.01 0.00 46.96 4.75
782 1289 0.037447 AAGGCCAAACTGAGAGAGGC 59.963 55.000 5.01 5.50 44.48 4.70
783 1290 2.575805 AAAGGCCAAACTGAGAGAGG 57.424 50.000 5.01 0.00 0.00 3.69
808 1315 4.282195 ACATTTTGGCCCGTTTTAATCTCA 59.718 37.500 0.00 0.00 0.00 3.27
814 1321 4.575236 GGAAAAACATTTTGGCCCGTTTTA 59.425 37.500 0.00 0.00 39.86 1.52
820 1327 3.814625 TCAAGGAAAAACATTTTGGCCC 58.185 40.909 0.00 2.22 0.00 5.80
827 1334 7.655732 CCCGTTTATTTCTCAAGGAAAAACATT 59.344 33.333 0.00 0.00 45.56 2.71
828 1335 7.151976 CCCGTTTATTTCTCAAGGAAAAACAT 58.848 34.615 0.00 0.00 45.56 2.71
829 1336 6.508777 CCCGTTTATTTCTCAAGGAAAAACA 58.491 36.000 0.00 0.00 45.56 2.83
830 1337 5.404366 GCCCGTTTATTTCTCAAGGAAAAAC 59.596 40.000 0.00 0.00 45.56 2.43
831 1338 5.510009 GGCCCGTTTATTTCTCAAGGAAAAA 60.510 40.000 0.00 0.00 45.56 1.94
832 1339 4.021807 GGCCCGTTTATTTCTCAAGGAAAA 60.022 41.667 0.00 0.00 45.56 2.29
833 1340 3.508402 GGCCCGTTTATTTCTCAAGGAAA 59.492 43.478 0.00 0.00 46.33 3.13
834 1341 3.086282 GGCCCGTTTATTTCTCAAGGAA 58.914 45.455 0.00 0.00 0.00 3.36
835 1342 2.619590 GGGCCCGTTTATTTCTCAAGGA 60.620 50.000 5.69 0.00 0.00 3.36
836 1343 1.749063 GGGCCCGTTTATTTCTCAAGG 59.251 52.381 5.69 0.00 0.00 3.61
837 1344 2.442413 TGGGCCCGTTTATTTCTCAAG 58.558 47.619 19.37 0.00 0.00 3.02
838 1345 2.588464 TGGGCCCGTTTATTTCTCAA 57.412 45.000 19.37 0.00 0.00 3.02
839 1346 2.818751 ATGGGCCCGTTTATTTCTCA 57.181 45.000 19.37 0.00 0.00 3.27
840 1347 4.465632 AAAATGGGCCCGTTTATTTCTC 57.534 40.909 36.70 1.03 34.45 2.87
841 1348 4.901197 AAAAATGGGCCCGTTTATTTCT 57.099 36.364 36.70 21.35 34.45 2.52
928 1435 1.183549 TCGACTAGGGAGTTTGAGGC 58.816 55.000 0.00 0.00 35.45 4.70
931 1438 2.758979 GTGGATCGACTAGGGAGTTTGA 59.241 50.000 0.00 0.00 35.45 2.69
959 1466 2.363711 CTAGGTATTGCTGCGCCGGA 62.364 60.000 5.05 0.00 0.00 5.14
1026 1563 3.700831 GAGGCGGTCGAGGAGGAGA 62.701 68.421 0.00 0.00 0.00 3.71
1089 1626 2.434185 GCCGCTTCGTCCATGTCA 60.434 61.111 0.00 0.00 0.00 3.58
1386 1923 4.760047 GCGCAGGCGAAGAGGGAA 62.760 66.667 18.96 0.00 42.83 3.97
1513 2050 1.216710 GGGAGTTCAGCGAGTCCTG 59.783 63.158 10.25 3.04 38.85 3.86
1627 2164 4.921515 ACAGTAATGTGTACACTTAGCACG 59.078 41.667 25.60 11.72 36.04 5.34
2686 3232 1.658114 GGTGCTGAAAACCGGGAAC 59.342 57.895 6.32 0.00 0.00 3.62
3012 3566 4.171103 GGCGAGGCCGGGTATGTT 62.171 66.667 2.18 0.00 39.62 2.71
4211 4767 2.738643 CGTGTCATATGGTGGAGGTGAC 60.739 54.545 2.13 0.00 39.58 3.67
5038 7152 0.532573 GTGAGAGGAGGTCGCAATGA 59.467 55.000 0.00 0.00 36.65 2.57
5586 7713 0.178990 GGGTCAGAAACAGGGTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
6472 8600 1.845809 CTTGAAGTCGCCACTGGTGC 61.846 60.000 3.48 0.00 32.51 5.01
6727 8859 9.768662 GGATTTGCATCAATTAGAATGGTTATT 57.231 29.630 0.00 0.00 0.00 1.40
6728 8860 8.926374 TGGATTTGCATCAATTAGAATGGTTAT 58.074 29.630 0.00 0.00 0.00 1.89
6729 8861 8.303780 TGGATTTGCATCAATTAGAATGGTTA 57.696 30.769 0.00 0.00 0.00 2.85
6730 8862 7.185318 TGGATTTGCATCAATTAGAATGGTT 57.815 32.000 0.00 0.00 0.00 3.67
6834 8966 7.148490 CCAGTTGATGTAATGTTCGTTGATGTA 60.148 37.037 0.00 0.00 0.00 2.29
6881 9013 0.762418 TCGTCTCCAAGCAAGGGAAA 59.238 50.000 0.00 0.00 33.11 3.13
6925 9057 6.316140 TGATAATACACAATTCAGTGACCAGC 59.684 38.462 3.12 0.00 42.05 4.85
6945 9077 8.807118 GGACAACATGGAGTAGATATCTGATAA 58.193 37.037 15.79 0.00 0.00 1.75
6981 9113 2.414957 GGTAAAAACATGCGTGGCCTAC 60.415 50.000 11.36 6.10 0.00 3.18
6985 9117 0.315568 TGGGTAAAAACATGCGTGGC 59.684 50.000 11.36 0.00 0.00 5.01
6998 9130 2.232452 CCACCAATGCGAATTTGGGTAA 59.768 45.455 13.74 0.00 46.49 2.85
6999 9131 1.821753 CCACCAATGCGAATTTGGGTA 59.178 47.619 13.74 0.00 46.49 3.69
7000 9132 0.607620 CCACCAATGCGAATTTGGGT 59.392 50.000 13.74 4.68 46.49 4.51
7110 9242 0.603065 GGTTGTCCATGCAAGGAACC 59.397 55.000 13.20 13.91 39.92 3.62
7549 9682 8.905702 CAATAATTTGACAACTAGAAACACAGC 58.094 33.333 0.00 0.00 34.60 4.40
7676 9812 1.954382 GGTGGGTTGAGGTTGAAGAAC 59.046 52.381 0.00 0.00 0.00 3.01
7752 9888 5.649782 TTTCAGCAATTTCCTCTGATTCC 57.350 39.130 0.00 0.00 36.81 3.01
7970 10131 7.809331 CCGACTGTTAAGTTTGTACTGTATGTA 59.191 37.037 0.00 0.00 36.52 2.29
7971 10132 6.643770 CCGACTGTTAAGTTTGTACTGTATGT 59.356 38.462 0.00 0.00 36.52 2.29
7972 10133 6.643770 ACCGACTGTTAAGTTTGTACTGTATG 59.356 38.462 0.00 0.00 36.52 2.39
7973 10134 6.643770 CACCGACTGTTAAGTTTGTACTGTAT 59.356 38.462 0.00 0.00 36.52 2.29
7994 10155 2.126502 GGGCGATTTGTTGCACCG 60.127 61.111 0.00 0.00 0.00 4.94
8014 10175 6.299141 ACCTGAAACATGTCACTATGAAGTT 58.701 36.000 0.00 0.00 31.97 2.66
8046 10595 3.412237 TGTTTACCCAACTCCTGCTAC 57.588 47.619 0.00 0.00 36.21 3.58
8053 10602 7.174946 TCTGAAGATCAAATGTTTACCCAACTC 59.825 37.037 0.00 0.00 36.21 3.01
8054 10603 7.004086 TCTGAAGATCAAATGTTTACCCAACT 58.996 34.615 0.00 0.00 36.21 3.16
8055 10604 7.084486 GTCTGAAGATCAAATGTTTACCCAAC 58.916 38.462 0.00 0.00 35.71 3.77
8112 10661 2.163010 AGACGTACTATGTGGACAACGG 59.837 50.000 6.66 0.00 34.81 4.44
8195 10744 0.592247 GCTGGTGTCAGTTTTGCGTG 60.592 55.000 0.00 0.00 42.78 5.34
8197 10746 0.381801 AAGCTGGTGTCAGTTTTGCG 59.618 50.000 0.00 0.00 40.73 4.85
8205 10783 1.881973 GCATTCAGAAAGCTGGTGTCA 59.118 47.619 3.01 0.00 42.53 3.58
8246 10824 0.666274 TGAGCGCGCCTAATTATCCG 60.666 55.000 30.33 0.00 0.00 4.18
8254 10832 2.220615 TTAGCAAGTGAGCGCGCCTA 62.221 55.000 30.33 17.03 40.15 3.93
8257 10835 2.096594 GTTAGCAAGTGAGCGCGC 59.903 61.111 26.66 26.66 40.15 6.86
8288 10866 2.494445 CGGCGAGGCTCACATGTA 59.506 61.111 15.95 0.00 0.00 2.29
8354 10932 2.748461 TTGTTGTTTCTACAGCACGC 57.252 45.000 0.00 0.00 43.86 5.34
8389 10967 5.706369 GCATAGTATCCGTCCTTCTCTTAGA 59.294 44.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.