Multiple sequence alignment - TraesCS3B01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G315700 chr3B 100.000 5324 0 0 1 5324 507297943 507303266 0.000000e+00 9832.0
1 TraesCS3B01G315700 chr3B 86.869 99 11 2 4699 4797 658388146 658388050 5.640000e-20 110.0
2 TraesCS3B01G315700 chr3D 91.923 2142 117 21 2513 4611 390075005 390077133 0.000000e+00 2946.0
3 TraesCS3B01G315700 chr3D 89.994 1799 116 31 693 2456 390073150 390074919 0.000000e+00 2266.0
4 TraesCS3B01G315700 chr3D 97.354 189 4 1 5049 5237 390077517 390077704 2.390000e-83 320.0
5 TraesCS3B01G315700 chr3D 83.265 245 30 9 455 694 350133767 350134005 1.160000e-51 215.0
6 TraesCS3B01G315700 chr3D 94.805 77 4 0 4823 4899 390077449 390077525 2.600000e-23 121.0
7 TraesCS3B01G315700 chr3D 95.588 68 3 0 4638 4705 390077133 390077200 5.640000e-20 110.0
8 TraesCS3B01G315700 chr3A 92.162 1850 99 22 2513 4325 510690001 510691841 0.000000e+00 2571.0
9 TraesCS3B01G315700 chr3A 89.711 1798 108 30 693 2456 510688159 510689913 0.000000e+00 2224.0
10 TraesCS3B01G315700 chr3A 96.484 256 7 2 5049 5303 510692403 510692657 6.380000e-114 422.0
11 TraesCS3B01G315700 chr3A 98.667 150 2 0 4900 5049 737387921 737387772 3.160000e-67 267.0
12 TraesCS3B01G315700 chr3A 93.197 147 10 0 4902 5048 687616126 687616272 3.230000e-52 217.0
13 TraesCS3B01G315700 chr3A 93.056 144 10 0 4905 5048 716802988 716803131 1.500000e-50 211.0
14 TraesCS3B01G315700 chr2B 98.124 693 10 2 1 693 246067712 246067023 0.000000e+00 1205.0
15 TraesCS3B01G315700 chr2B 97.931 145 3 0 4904 5048 615332461 615332317 8.850000e-63 252.0
16 TraesCS3B01G315700 chr4B 98.171 656 8 2 1 656 414191677 414192328 0.000000e+00 1142.0
17 TraesCS3B01G315700 chr4B 82.821 716 89 27 1 694 347764091 347763388 1.270000e-170 610.0
18 TraesCS3B01G315700 chr4B 85.859 99 12 2 4699 4797 175903720 175903816 2.620000e-18 104.0
19 TraesCS3B01G315700 chr2A 93.229 384 21 4 1 384 240790430 240790052 1.290000e-155 560.0
20 TraesCS3B01G315700 chr2A 86.420 243 22 5 378 612 240786876 240786637 6.840000e-64 255.0
21 TraesCS3B01G315700 chr2A 92.667 150 11 0 4897 5046 594654368 594654219 3.230000e-52 217.0
22 TraesCS3B01G315700 chr2A 86.364 88 11 1 4705 4792 745406841 745406927 1.580000e-15 95.3
23 TraesCS3B01G315700 chr2A 86.047 86 11 1 4707 4792 753210641 753210725 2.040000e-14 91.6
24 TraesCS3B01G315700 chr7D 94.667 150 8 0 4900 5049 93883387 93883536 3.210000e-57 233.0
25 TraesCS3B01G315700 chr7D 81.633 245 34 9 455 694 606449399 606449637 5.440000e-45 193.0
26 TraesCS3B01G315700 chr7D 83.838 99 14 2 4706 4804 264750139 264750235 5.680000e-15 93.5
27 TraesCS3B01G315700 chr7D 94.340 53 3 0 642 694 56867451 56867503 1.230000e-11 82.4
28 TraesCS3B01G315700 chr5D 94.595 148 7 1 4904 5051 246008723 246008577 1.490000e-55 228.0
29 TraesCS3B01G315700 chr1D 92.000 150 12 0 4899 5048 468747501 468747352 1.500000e-50 211.0
30 TraesCS3B01G315700 chr1D 72.951 366 73 17 3192 3543 438228428 438228781 2.620000e-18 104.0
31 TraesCS3B01G315700 chr1D 87.209 86 10 1 4707 4792 18465013 18464929 4.390000e-16 97.1
32 TraesCS3B01G315700 chr7A 91.608 143 12 0 4907 5049 650914303 650914161 1.170000e-46 198.0
33 TraesCS3B01G315700 chr5A 79.918 244 36 10 455 691 44969145 44969382 3.300000e-37 167.0
34 TraesCS3B01G315700 chr5A 83.636 110 14 4 4697 4805 29180076 29180182 3.390000e-17 100.0
35 TraesCS3B01G315700 chr1B 81.579 152 25 3 3394 3543 593837450 593837600 7.240000e-24 122.0
36 TraesCS3B01G315700 chr1A 82.353 136 22 2 3409 3543 534933101 534933235 3.370000e-22 117.0
37 TraesCS3B01G315700 chr1A 86.517 89 11 1 4705 4793 358735108 358735195 4.390000e-16 97.1
38 TraesCS3B01G315700 chrUn 96.875 64 2 0 631 694 79635779 79635842 2.030000e-19 108.0
39 TraesCS3B01G315700 chrUn 96.875 64 2 0 631 694 263146744 263146807 2.030000e-19 108.0
40 TraesCS3B01G315700 chrUn 96.875 64 2 0 631 694 263151453 263151390 2.030000e-19 108.0
41 TraesCS3B01G315700 chrUn 92.453 53 4 0 641 693 77492312 77492260 5.720000e-10 76.8
42 TraesCS3B01G315700 chr7B 86.316 95 11 2 4706 4800 677295024 677294932 9.430000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G315700 chr3B 507297943 507303266 5323 False 9832.0 9832 100.000000 1 5324 1 chr3B.!!$F1 5323
1 TraesCS3B01G315700 chr3D 390073150 390077704 4554 False 1152.6 2946 93.932800 693 5237 5 chr3D.!!$F2 4544
2 TraesCS3B01G315700 chr3A 510688159 510692657 4498 False 1739.0 2571 92.785667 693 5303 3 chr3A.!!$F3 4610
3 TraesCS3B01G315700 chr2B 246067023 246067712 689 True 1205.0 1205 98.124000 1 693 1 chr2B.!!$R1 692
4 TraesCS3B01G315700 chr4B 414191677 414192328 651 False 1142.0 1142 98.171000 1 656 1 chr4B.!!$F2 655
5 TraesCS3B01G315700 chr4B 347763388 347764091 703 True 610.0 610 82.821000 1 694 1 chr4B.!!$R1 693
6 TraesCS3B01G315700 chr2A 240786637 240790430 3793 True 407.5 560 89.824500 1 612 2 chr2A.!!$R2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 4193 0.112412 AAATTCCACTTCGCCCCAGT 59.888 50.0 0.00 0.00 0.00 4.00 F
1182 4416 0.105778 GAAGAGCGGATCCAGGAAGG 59.894 60.0 13.41 0.00 39.47 3.46 F
1343 4577 0.175760 GTTGCCTGCTCGGTCAGATA 59.824 55.0 6.44 0.00 36.19 1.98 F
1508 4752 0.179113 TGATGATAACGAGCTGCGCA 60.179 50.0 10.98 10.98 46.04 6.09 F
3338 6669 0.036010 ACCTGTTCATCCCTTGCTCG 60.036 55.0 0.00 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2485 5750 0.250640 GGTGGATGGGCTCTATGCAG 60.251 60.000 0.00 0.0 45.15 4.41 R
2970 6295 1.608055 CCATTGACAGTTGGTGAGCA 58.392 50.000 0.00 0.0 0.00 4.26 R
3096 6421 1.985614 CTCCCATCTGTGTGCAGGA 59.014 57.895 0.00 0.0 42.78 3.86 R
3468 6818 0.924823 AGGCTTGCCATCCAGATCTT 59.075 50.000 14.54 0.0 0.00 2.40 R
5034 8570 0.035317 TGCTGACGAAACTGCTCCAT 59.965 50.000 0.00 0.0 36.10 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
565 3787 1.535028 CGCATTTCTGGTACTGTTGCA 59.465 47.619 0.00 0.00 32.34 4.08
753 3976 0.607489 CAGCTGAAAGGGGTCCAGTG 60.607 60.000 8.42 0.00 0.00 3.66
754 3977 1.303643 GCTGAAAGGGGTCCAGTGG 60.304 63.158 1.40 1.40 0.00 4.00
755 3978 1.303643 CTGAAAGGGGTCCAGTGGC 60.304 63.158 3.51 0.00 0.00 5.01
756 3979 2.035783 GAAAGGGGTCCAGTGGCC 59.964 66.667 3.51 9.23 0.00 5.36
757 3980 2.780924 AAAGGGGTCCAGTGGCCA 60.781 61.111 20.10 0.00 0.00 5.36
758 3981 2.771328 GAAAGGGGTCCAGTGGCCAG 62.771 65.000 20.10 0.00 0.00 4.85
759 3982 4.599500 AGGGGTCCAGTGGCCAGT 62.599 66.667 20.10 6.41 0.00 4.00
839 4062 1.463444 GGTGGACTTTTCGGTCATTCG 59.537 52.381 0.00 0.00 37.91 3.34
899 4122 1.847088 GGAGTAAAAGCTCTCCCCCAT 59.153 52.381 7.79 0.00 42.96 4.00
960 4191 0.897863 CCAAATTCCACTTCGCCCCA 60.898 55.000 0.00 0.00 0.00 4.96
962 4193 0.112412 AAATTCCACTTCGCCCCAGT 59.888 50.000 0.00 0.00 0.00 4.00
972 4203 3.391382 GCCCCAGTCGCCTGTAGT 61.391 66.667 0.00 0.00 36.95 2.73
991 4222 7.436673 CCTGTAGTAATAGCAACAAGAAGCTAG 59.563 40.741 0.00 0.00 45.53 3.42
992 4223 6.757010 TGTAGTAATAGCAACAAGAAGCTAGC 59.243 38.462 6.62 6.62 45.53 3.42
1085 4319 4.748679 GCCGCGCTTCAAGCAGTG 62.749 66.667 10.73 8.82 42.58 3.66
1089 4323 2.866028 CGCTTCAAGCAGTGCTCC 59.134 61.111 20.03 4.01 42.58 4.70
1096 4330 0.320247 CAAGCAGTGCTCCGAAGAGT 60.320 55.000 20.03 0.00 42.59 3.24
1113 4347 2.034066 TTGAAGCCGCCCAGGAAG 59.966 61.111 0.00 0.00 45.00 3.46
1116 4350 4.729918 AAGCCGCCCAGGAAGCAG 62.730 66.667 0.00 0.00 45.00 4.24
1158 4392 4.436998 GACGAGGTGACGCTGGGG 62.437 72.222 0.00 0.00 36.70 4.96
1176 4410 2.786495 GGCGAGAAGAGCGGATCCA 61.786 63.158 13.41 0.00 35.00 3.41
1182 4416 0.105778 GAAGAGCGGATCCAGGAAGG 59.894 60.000 13.41 0.00 39.47 3.46
1323 4557 3.005539 AGGTCGTGGGCTCATGCT 61.006 61.111 0.00 0.00 39.59 3.79
1329 4563 2.677524 TGGGCTCATGCTGTTGCC 60.678 61.111 0.00 0.00 44.22 4.52
1343 4577 0.175760 GTTGCCTGCTCGGTCAGATA 59.824 55.000 6.44 0.00 36.19 1.98
1349 4583 1.137872 CTGCTCGGTCAGATAAAGGCT 59.862 52.381 0.00 0.00 36.19 4.58
1352 4586 2.801342 GCTCGGTCAGATAAAGGCTCTG 60.801 54.545 0.00 0.00 41.23 3.35
1357 4591 3.181456 GGTCAGATAAAGGCTCTGCATCT 60.181 47.826 0.00 0.00 39.98 2.90
1403 4637 0.378962 TGTTCCCGTTGTTTGCTTCG 59.621 50.000 0.00 0.00 0.00 3.79
1476 4720 1.878088 CCTATGAGCTGCGCATTTCAT 59.122 47.619 28.49 28.49 34.81 2.57
1478 4722 2.203800 ATGAGCTGCGCATTTCATTG 57.796 45.000 23.41 8.30 0.00 2.82
1485 4729 3.784746 GCATTTCATTGTGCGGGC 58.215 55.556 0.00 0.00 0.00 6.13
1487 4731 0.460635 GCATTTCATTGTGCGGGCAT 60.461 50.000 0.00 0.00 0.00 4.40
1488 4732 2.008045 GCATTTCATTGTGCGGGCATT 61.008 47.619 0.00 0.00 0.00 3.56
1489 4733 2.348660 CATTTCATTGTGCGGGCATTT 58.651 42.857 0.00 0.00 0.00 2.32
1490 4734 1.793258 TTTCATTGTGCGGGCATTTG 58.207 45.000 0.00 0.00 0.00 2.32
1491 4735 0.964700 TTCATTGTGCGGGCATTTGA 59.035 45.000 0.00 0.00 0.00 2.69
1492 4736 1.184431 TCATTGTGCGGGCATTTGAT 58.816 45.000 0.00 0.00 0.00 2.57
1493 4737 1.135053 TCATTGTGCGGGCATTTGATG 60.135 47.619 0.00 0.16 0.00 3.07
1494 4738 1.135053 CATTGTGCGGGCATTTGATGA 60.135 47.619 0.00 0.00 0.00 2.92
1495 4739 1.184431 TTGTGCGGGCATTTGATGAT 58.816 45.000 0.00 0.00 0.00 2.45
1496 4740 2.049888 TGTGCGGGCATTTGATGATA 57.950 45.000 0.00 0.00 0.00 2.15
1497 4741 2.373224 TGTGCGGGCATTTGATGATAA 58.627 42.857 0.00 0.00 0.00 1.75
1498 4742 2.098934 TGTGCGGGCATTTGATGATAAC 59.901 45.455 0.00 0.00 0.00 1.89
1499 4743 1.333308 TGCGGGCATTTGATGATAACG 59.667 47.619 0.00 0.00 0.00 3.18
1500 4744 1.601903 GCGGGCATTTGATGATAACGA 59.398 47.619 0.00 0.00 0.00 3.85
1501 4745 2.349817 GCGGGCATTTGATGATAACGAG 60.350 50.000 0.00 0.00 0.00 4.18
1502 4746 2.349817 CGGGCATTTGATGATAACGAGC 60.350 50.000 0.00 0.00 0.00 5.03
1503 4747 2.880890 GGGCATTTGATGATAACGAGCT 59.119 45.455 0.00 0.00 0.00 4.09
1504 4748 3.304257 GGGCATTTGATGATAACGAGCTG 60.304 47.826 0.00 0.00 0.00 4.24
1505 4749 3.294943 GCATTTGATGATAACGAGCTGC 58.705 45.455 0.00 0.00 0.00 5.25
1507 4751 0.930310 TTGATGATAACGAGCTGCGC 59.070 50.000 0.00 0.00 46.04 6.09
1508 4752 0.179113 TGATGATAACGAGCTGCGCA 60.179 50.000 10.98 10.98 46.04 6.09
1509 4753 0.930310 GATGATAACGAGCTGCGCAA 59.070 50.000 13.05 0.00 46.04 4.85
1510 4754 1.327460 GATGATAACGAGCTGCGCAAA 59.673 47.619 13.05 0.00 46.04 3.68
1515 4759 0.380378 AACGAGCTGCGCAAAAGAAA 59.620 45.000 13.05 0.00 46.04 2.52
1523 4767 2.477375 CTGCGCAAAAGAAAATGCACAT 59.523 40.909 13.05 0.00 42.68 3.21
1533 4777 5.534207 AGAAAATGCACATTTCCACTTGA 57.466 34.783 18.37 0.00 39.88 3.02
1592 4846 2.027561 GGGCCACTGTCTATTGTACACA 60.028 50.000 4.39 0.00 0.00 3.72
1683 4937 6.859017 TGATTTACAGATACTGCTAACACGA 58.141 36.000 0.00 0.00 34.37 4.35
1781 5035 5.596845 ACGCTTCATAAAACCACACATTTT 58.403 33.333 0.00 0.00 33.85 1.82
1825 5079 0.541063 TCACTCCTGGTTGGACGCTA 60.541 55.000 0.00 0.00 40.56 4.26
1852 5106 3.330701 TGGAAGTTTGAATGTAGGAGGCT 59.669 43.478 0.00 0.00 0.00 4.58
1889 5143 2.339728 GAGTATTCTCGCCATCTCCG 57.660 55.000 0.00 0.00 0.00 4.63
1947 5201 5.163353 TGTGTCCTCTTCTGTTTCACATGTA 60.163 40.000 0.00 0.00 31.03 2.29
1949 5203 5.758296 TGTCCTCTTCTGTTTCACATGTAAC 59.242 40.000 0.00 0.65 0.00 2.50
1965 5219 6.475727 CACATGTAACCAGGAGTATTAGAACG 59.524 42.308 0.00 0.00 0.00 3.95
1978 5233 6.525629 AGTATTAGAACGCAGATAGGCAAAT 58.474 36.000 0.00 0.00 0.00 2.32
2005 5260 3.561725 GGATCCCAAATGATCTGACGAAC 59.438 47.826 0.00 0.00 40.80 3.95
2012 5267 5.049474 CCAAATGATCTGACGAACTGACAAA 60.049 40.000 0.00 0.00 0.00 2.83
2015 5270 3.433274 TGATCTGACGAACTGACAAATGC 59.567 43.478 0.00 0.00 0.00 3.56
2095 5350 2.642311 TCCATGAACTGCCCTTGTTAGA 59.358 45.455 0.00 0.00 0.00 2.10
2120 5375 1.153107 TTGGCTCATCCGCATCCTG 60.153 57.895 0.00 0.00 37.80 3.86
2154 5409 1.759445 AGACATTACGCAGAGGCTCAT 59.241 47.619 18.26 1.50 38.10 2.90
2180 5435 5.122869 ACAAGACACATGCAGTTGATATGTC 59.877 40.000 4.40 3.47 33.06 3.06
2181 5436 4.835678 AGACACATGCAGTTGATATGTCA 58.164 39.130 10.43 0.00 37.93 3.58
2186 5441 6.642131 ACACATGCAGTTGATATGTCAAAAAC 59.358 34.615 6.45 0.00 45.38 2.43
2249 5513 8.993121 ACATATAAAGAAAGCCATGTATCGAAG 58.007 33.333 0.00 0.00 0.00 3.79
2270 5534 8.750298 TCGAAGAGAGAATTATACCAAGACTTT 58.250 33.333 0.00 0.00 0.00 2.66
2400 5665 6.765403 ACTGTGGTTTAAACTGCATAGAGTA 58.235 36.000 20.30 0.35 0.00 2.59
2436 5701 6.637657 ACTTAAGAAGGTGGACGTATTTAGG 58.362 40.000 10.09 0.00 0.00 2.69
2437 5702 6.438425 ACTTAAGAAGGTGGACGTATTTAGGA 59.562 38.462 10.09 0.00 0.00 2.94
2438 5703 5.952347 AAGAAGGTGGACGTATTTAGGAT 57.048 39.130 0.00 0.00 0.00 3.24
2439 5704 5.277857 AGAAGGTGGACGTATTTAGGATG 57.722 43.478 0.00 0.00 0.00 3.51
2440 5705 4.960469 AGAAGGTGGACGTATTTAGGATGA 59.040 41.667 0.00 0.00 0.00 2.92
2441 5706 5.424252 AGAAGGTGGACGTATTTAGGATGAA 59.576 40.000 0.00 0.00 0.00 2.57
2442 5707 5.019785 AGGTGGACGTATTTAGGATGAAC 57.980 43.478 0.00 0.00 0.00 3.18
2443 5708 4.468510 AGGTGGACGTATTTAGGATGAACA 59.531 41.667 0.00 0.00 0.00 3.18
2444 5709 5.130477 AGGTGGACGTATTTAGGATGAACAT 59.870 40.000 0.00 0.00 0.00 2.71
2445 5710 5.820947 GGTGGACGTATTTAGGATGAACATT 59.179 40.000 0.00 0.00 0.00 2.71
2446 5711 6.987992 GGTGGACGTATTTAGGATGAACATTA 59.012 38.462 0.00 0.00 0.00 1.90
2447 5712 7.496591 GGTGGACGTATTTAGGATGAACATTAA 59.503 37.037 0.00 0.00 0.00 1.40
2448 5713 9.052759 GTGGACGTATTTAGGATGAACATTAAT 57.947 33.333 0.00 0.00 0.00 1.40
2449 5714 9.621629 TGGACGTATTTAGGATGAACATTAATT 57.378 29.630 0.00 0.00 0.00 1.40
2503 5773 0.471617 ACTGCATAGAGCCCATCCAC 59.528 55.000 0.00 0.00 44.83 4.02
2509 5779 2.123018 TAGAGCCCATCCACCATCAT 57.877 50.000 0.00 0.00 0.00 2.45
2510 5780 2.123018 AGAGCCCATCCACCATCATA 57.877 50.000 0.00 0.00 0.00 2.15
2527 5847 5.012148 CCATCATACGAGAAAGTTAGGGGAT 59.988 44.000 0.00 0.00 0.00 3.85
2623 5943 1.636148 ATGCAACCTGCTCAAATGGT 58.364 45.000 0.00 0.00 45.31 3.55
2626 5946 2.961741 TGCAACCTGCTCAAATGGTAAA 59.038 40.909 0.00 0.00 45.31 2.01
2938 6263 6.892658 TTCAGTAGGTTTGTTACGGTAGTA 57.107 37.500 0.00 0.00 0.00 1.82
2952 6277 8.400947 TGTTACGGTAGTAGACAGATACAAATC 58.599 37.037 0.00 0.00 33.87 2.17
2970 6295 6.938507 ACAAATCAAATAATGCAGACATGGT 58.061 32.000 0.00 0.00 36.36 3.55
3096 6421 7.038154 ACACACATTAGCACAGTTTTTACAT 57.962 32.000 0.00 0.00 0.00 2.29
3123 6448 2.082231 CACAGATGGGAGCAGAACTTG 58.918 52.381 0.00 0.00 0.00 3.16
3127 6452 4.225942 ACAGATGGGAGCAGAACTTGAATA 59.774 41.667 0.00 0.00 0.00 1.75
3315 6646 4.096003 CGCTGGATGGGGTCGGTT 62.096 66.667 0.00 0.00 0.00 4.44
3338 6669 0.036010 ACCTGTTCATCCCTTGCTCG 60.036 55.000 0.00 0.00 0.00 5.03
3350 6684 2.223377 CCCTTGCTCGTGTTAACTTCAC 59.777 50.000 7.22 0.00 0.00 3.18
3351 6685 2.869801 CCTTGCTCGTGTTAACTTCACA 59.130 45.455 7.22 0.00 35.79 3.58
3388 6737 3.513662 CAAATTGCTCATTTGCATCCGA 58.486 40.909 8.44 0.00 44.18 4.55
3483 6833 1.202687 CCGCTAAGATCTGGATGGCAA 60.203 52.381 0.00 0.00 0.00 4.52
3554 6904 2.358957 CGGCATCTGAAAACATGGAGA 58.641 47.619 0.00 0.00 0.00 3.71
3557 6907 4.488879 GGCATCTGAAAACATGGAGAAAC 58.511 43.478 0.00 0.00 0.00 2.78
3564 6914 8.463930 TCTGAAAACATGGAGAAACTGTTATT 57.536 30.769 0.00 0.00 33.01 1.40
3570 6920 5.812642 ACATGGAGAAACTGTTATTAGCTCG 59.187 40.000 0.00 0.00 0.00 5.03
3574 6924 6.071221 TGGAGAAACTGTTATTAGCTCGGTAA 60.071 38.462 0.00 0.00 0.00 2.85
3575 6925 6.815142 GGAGAAACTGTTATTAGCTCGGTAAA 59.185 38.462 0.00 0.00 0.00 2.01
3577 6927 8.611654 AGAAACTGTTATTAGCTCGGTAAAAA 57.388 30.769 0.00 0.00 0.00 1.94
3589 6944 3.746940 TCGGTAAAAACAGGGGAAAGAG 58.253 45.455 0.00 0.00 0.00 2.85
3590 6945 3.136992 TCGGTAAAAACAGGGGAAAGAGT 59.863 43.478 0.00 0.00 0.00 3.24
3620 6975 1.335597 CCACAAGAGTGCGAACGAGTA 60.336 52.381 0.00 0.00 44.53 2.59
3762 7118 3.692406 GTCTCCGGTGGCGGTCTT 61.692 66.667 0.00 0.00 0.00 3.01
3767 7123 2.032071 CGGTGGCGGTCTTTCCTT 59.968 61.111 0.00 0.00 0.00 3.36
3846 7202 1.915983 GTGGAGGAGGAATGGGACC 59.084 63.158 0.00 0.00 0.00 4.46
3856 7212 2.439553 GAATGGGACCTGGCCACCAA 62.440 60.000 16.15 3.51 36.44 3.67
3857 7213 1.814292 AATGGGACCTGGCCACCAAT 61.814 55.000 16.15 5.92 36.44 3.16
3860 7216 1.384191 GGACCTGGCCACCAATTCT 59.616 57.895 0.00 0.00 30.80 2.40
3908 7264 1.541233 GCCATCGGGTAGAGGATGTTG 60.541 57.143 0.98 0.00 38.66 3.33
3933 7290 4.388499 TTTCGGTGCGAGGGAGGC 62.388 66.667 0.00 0.00 37.14 4.70
4014 7371 2.050077 GCTGCGTTTTCCTGGCAC 60.050 61.111 0.00 0.00 32.46 5.01
4079 7436 2.433868 TTCTCCACCGTTCTTCTTCG 57.566 50.000 0.00 0.00 0.00 3.79
4081 7438 1.005394 TCCACCGTTCTTCTTCGCC 60.005 57.895 0.00 0.00 0.00 5.54
4082 7439 1.004918 CCACCGTTCTTCTTCGCCT 60.005 57.895 0.00 0.00 0.00 5.52
4084 7441 1.337447 CCACCGTTCTTCTTCGCCTAA 60.337 52.381 0.00 0.00 0.00 2.69
4086 7443 1.342174 ACCGTTCTTCTTCGCCTAACA 59.658 47.619 0.00 0.00 0.00 2.41
4095 7452 0.394938 TTCGCCTAACAGACCTTGCA 59.605 50.000 0.00 0.00 0.00 4.08
4096 7453 0.394938 TCGCCTAACAGACCTTGCAA 59.605 50.000 0.00 0.00 0.00 4.08
4100 7457 2.819608 GCCTAACAGACCTTGCAAATGA 59.180 45.455 0.00 0.00 0.00 2.57
4124 7481 4.940463 TGTATTTGCGTAGATACCCTCAC 58.060 43.478 10.87 0.00 0.00 3.51
4129 7486 2.174210 TGCGTAGATACCCTCACCTACT 59.826 50.000 0.00 0.00 31.78 2.57
4132 7489 4.716794 CGTAGATACCCTCACCTACTTCT 58.283 47.826 0.00 0.00 31.78 2.85
4133 7490 4.756135 CGTAGATACCCTCACCTACTTCTC 59.244 50.000 0.00 0.00 31.78 2.87
4219 7581 1.675641 GCGGTGAGCCTGGTTGATT 60.676 57.895 0.00 0.00 40.81 2.57
4220 7582 1.244019 GCGGTGAGCCTGGTTGATTT 61.244 55.000 0.00 0.00 40.81 2.17
4230 7592 8.708742 GTGAGCCTGGTTGATTTAAAATAAAAC 58.291 33.333 0.00 0.00 0.00 2.43
4262 7624 6.092944 TCAAATGCAAGCCATCATCAAATTTC 59.907 34.615 0.00 0.00 31.43 2.17
4293 7655 5.791974 CGATTTCTTCATTATTATGGCTGCG 59.208 40.000 0.00 0.00 32.40 5.18
4337 7730 2.226674 GCAGGTGAGTTTACAAGGCTTC 59.773 50.000 0.00 0.00 0.00 3.86
4372 7765 1.466950 CGGCGCCATAACTTTTCAAGA 59.533 47.619 28.98 0.00 0.00 3.02
4386 7779 7.001695 ACTTTTCAAGACTTCAAGTTACGTC 57.998 36.000 0.00 0.00 0.00 4.34
4390 7783 5.597806 TCAAGACTTCAAGTTACGTCATGT 58.402 37.500 0.00 0.00 0.00 3.21
4408 7801 6.895040 CGTCATGTAAATAAGTCTTTTCGAGC 59.105 38.462 0.00 0.00 0.00 5.03
4426 7819 1.066002 AGCGGATAATGTTGCACATGC 59.934 47.619 0.00 0.00 37.97 4.06
4446 7839 6.728164 ACATGCATAATCTAGTAGAGTGGGAT 59.272 38.462 10.34 6.38 0.00 3.85
4475 7876 1.680989 TCCAAGCCACGGAGATCGA 60.681 57.895 0.00 0.00 42.43 3.59
4493 7894 1.887198 CGAGGGAGTCTGTACAACTGT 59.113 52.381 13.23 0.00 0.00 3.55
4505 7909 7.868415 AGTCTGTACAACTGTTATTCTTCTGAC 59.132 37.037 9.11 2.39 0.00 3.51
4522 7926 0.703466 GACGACGCTCGAGTTTGAAG 59.297 55.000 15.13 3.95 43.74 3.02
4553 7957 5.839621 AGCATATCAAATTGTGGAAGCATC 58.160 37.500 0.00 0.00 0.00 3.91
4587 7992 5.411361 TGAGTGAATAATCAAACTTGGGTCG 59.589 40.000 0.00 0.00 37.30 4.79
4591 7996 5.765677 TGAATAATCAAACTTGGGTCGACAA 59.234 36.000 18.91 2.86 30.99 3.18
4625 8030 2.418628 ACGGACACGCAAGGAATAATTG 59.581 45.455 0.00 0.00 46.04 2.32
4635 8040 5.901884 CGCAAGGAATAATTGATGTACGTTC 59.098 40.000 0.00 0.00 0.00 3.95
4636 8041 6.238103 CGCAAGGAATAATTGATGTACGTTCT 60.238 38.462 0.00 0.00 0.00 3.01
4787 8192 8.682936 ATGCTCTTGTATTAGTTTATGAAGGG 57.317 34.615 0.00 0.00 0.00 3.95
4788 8193 7.857456 TGCTCTTGTATTAGTTTATGAAGGGA 58.143 34.615 0.00 0.00 0.00 4.20
4789 8194 7.987458 TGCTCTTGTATTAGTTTATGAAGGGAG 59.013 37.037 0.00 0.00 0.00 4.30
4790 8195 7.988028 GCTCTTGTATTAGTTTATGAAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
4796 8201 9.833917 GTATTAGTTTATGAAGGGAGTAGCTTT 57.166 33.333 0.00 0.00 0.00 3.51
4797 8202 8.738645 ATTAGTTTATGAAGGGAGTAGCTTTG 57.261 34.615 0.00 0.00 0.00 2.77
4798 8203 6.128138 AGTTTATGAAGGGAGTAGCTTTGT 57.872 37.500 0.00 0.00 0.00 2.83
4801 8206 8.329502 AGTTTATGAAGGGAGTAGCTTTGTAAT 58.670 33.333 0.00 0.00 0.00 1.89
4806 8211 8.034313 TGAAGGGAGTAGCTTTGTAATATGAT 57.966 34.615 0.00 0.00 0.00 2.45
4807 8212 7.933577 TGAAGGGAGTAGCTTTGTAATATGATG 59.066 37.037 0.00 0.00 0.00 3.07
4808 8213 6.773638 AGGGAGTAGCTTTGTAATATGATGG 58.226 40.000 0.00 0.00 0.00 3.51
4810 8215 7.238514 AGGGAGTAGCTTTGTAATATGATGGAT 59.761 37.037 0.00 0.00 0.00 3.41
4811 8216 7.885399 GGGAGTAGCTTTGTAATATGATGGATT 59.115 37.037 0.00 0.00 0.00 3.01
4812 8217 8.940952 GGAGTAGCTTTGTAATATGATGGATTC 58.059 37.037 0.00 0.00 0.00 2.52
4813 8218 9.494271 GAGTAGCTTTGTAATATGATGGATTCA 57.506 33.333 0.00 0.00 39.12 2.57
4816 8221 8.118976 AGCTTTGTAATATGATGGATTCATGG 57.881 34.615 0.00 0.00 44.90 3.66
4820 8225 7.984422 TGTAATATGATGGATTCATGGTGTC 57.016 36.000 0.00 0.00 44.90 3.67
4892 8428 7.926674 TCAATTATTCATGCTTCAGACTTCA 57.073 32.000 0.00 0.00 0.00 3.02
4893 8429 7.982224 TCAATTATTCATGCTTCAGACTTCAG 58.018 34.615 0.00 0.00 0.00 3.02
4894 8430 5.808042 TTATTCATGCTTCAGACTTCAGC 57.192 39.130 0.00 0.00 0.00 4.26
4896 8432 3.130280 TCATGCTTCAGACTTCAGCAA 57.870 42.857 8.99 0.00 46.35 3.91
4897 8433 3.479489 TCATGCTTCAGACTTCAGCAAA 58.521 40.909 8.99 0.00 46.35 3.68
4898 8434 3.884693 TCATGCTTCAGACTTCAGCAAAA 59.115 39.130 8.99 0.00 46.35 2.44
4899 8435 3.976793 TGCTTCAGACTTCAGCAAAAG 57.023 42.857 3.25 0.00 40.61 2.27
4900 8436 3.544684 TGCTTCAGACTTCAGCAAAAGA 58.455 40.909 3.25 0.00 40.61 2.52
4901 8437 3.562973 TGCTTCAGACTTCAGCAAAAGAG 59.437 43.478 3.25 0.00 40.61 2.85
4902 8438 3.563390 GCTTCAGACTTCAGCAAAAGAGT 59.437 43.478 5.23 0.00 33.45 3.24
4903 8439 4.319405 GCTTCAGACTTCAGCAAAAGAGTC 60.319 45.833 5.23 0.00 33.45 3.36
4904 8440 4.406648 TCAGACTTCAGCAAAAGAGTCA 57.593 40.909 5.23 0.00 0.00 3.41
4905 8441 4.965814 TCAGACTTCAGCAAAAGAGTCAT 58.034 39.130 5.23 0.00 0.00 3.06
4906 8442 4.753610 TCAGACTTCAGCAAAAGAGTCATG 59.246 41.667 5.23 0.00 0.00 3.07
4907 8443 3.501445 AGACTTCAGCAAAAGAGTCATGC 59.499 43.478 7.31 7.31 40.34 4.06
4913 8449 3.770263 GCAAAAGAGTCATGCTATGCA 57.230 42.857 7.96 0.00 44.86 3.96
4914 8450 3.432782 GCAAAAGAGTCATGCTATGCAC 58.567 45.455 7.96 0.00 43.04 4.57
4915 8451 3.119743 GCAAAAGAGTCATGCTATGCACA 60.120 43.478 7.96 0.00 43.04 4.57
4916 8452 4.409570 CAAAAGAGTCATGCTATGCACAC 58.590 43.478 0.00 0.00 43.04 3.82
4917 8453 1.931906 AGAGTCATGCTATGCACACG 58.068 50.000 0.00 0.00 43.04 4.49
4918 8454 1.478105 AGAGTCATGCTATGCACACGA 59.522 47.619 0.00 0.00 43.04 4.35
4919 8455 2.102084 AGAGTCATGCTATGCACACGAT 59.898 45.455 0.00 0.00 43.04 3.73
4920 8456 3.319122 AGAGTCATGCTATGCACACGATA 59.681 43.478 0.00 0.00 43.04 2.92
4921 8457 4.051237 GAGTCATGCTATGCACACGATAA 58.949 43.478 0.00 0.00 43.04 1.75
4922 8458 4.441792 AGTCATGCTATGCACACGATAAA 58.558 39.130 0.00 0.00 43.04 1.40
4923 8459 4.875536 AGTCATGCTATGCACACGATAAAA 59.124 37.500 0.00 0.00 43.04 1.52
4924 8460 5.528690 AGTCATGCTATGCACACGATAAAAT 59.471 36.000 0.00 0.00 43.04 1.82
4925 8461 5.848036 GTCATGCTATGCACACGATAAAATC 59.152 40.000 0.00 0.00 43.04 2.17
4926 8462 5.526846 TCATGCTATGCACACGATAAAATCA 59.473 36.000 0.00 0.00 43.04 2.57
4927 8463 5.408204 TGCTATGCACACGATAAAATCAG 57.592 39.130 0.00 0.00 31.71 2.90
4928 8464 4.273235 TGCTATGCACACGATAAAATCAGG 59.727 41.667 0.00 0.00 31.71 3.86
4929 8465 4.511454 GCTATGCACACGATAAAATCAGGA 59.489 41.667 0.00 0.00 0.00 3.86
4930 8466 4.882671 ATGCACACGATAAAATCAGGAC 57.117 40.909 0.00 0.00 0.00 3.85
4931 8467 2.670905 TGCACACGATAAAATCAGGACG 59.329 45.455 0.00 0.00 0.00 4.79
4932 8468 2.927477 GCACACGATAAAATCAGGACGA 59.073 45.455 0.00 0.00 0.00 4.20
4933 8469 3.555956 GCACACGATAAAATCAGGACGAT 59.444 43.478 0.00 0.00 35.12 3.73
4934 8470 4.034048 GCACACGATAAAATCAGGACGATT 59.966 41.667 0.00 0.00 46.70 3.34
4935 8471 5.728255 CACACGATAAAATCAGGACGATTC 58.272 41.667 0.00 0.00 43.83 2.52
4936 8472 5.290885 CACACGATAAAATCAGGACGATTCA 59.709 40.000 0.00 0.00 43.83 2.57
4937 8473 5.291128 ACACGATAAAATCAGGACGATTCAC 59.709 40.000 0.00 0.00 43.83 3.18
4938 8474 5.290885 CACGATAAAATCAGGACGATTCACA 59.709 40.000 0.00 0.00 43.83 3.58
4939 8475 5.520288 ACGATAAAATCAGGACGATTCACAG 59.480 40.000 0.00 0.00 43.83 3.66
4940 8476 5.557136 CGATAAAATCAGGACGATTCACAGC 60.557 44.000 0.00 0.00 43.83 4.40
4941 8477 2.029838 AATCAGGACGATTCACAGCC 57.970 50.000 0.00 0.00 40.48 4.85
4942 8478 0.179100 ATCAGGACGATTCACAGCCG 60.179 55.000 0.00 0.00 0.00 5.52
4943 8479 1.215382 CAGGACGATTCACAGCCGA 59.785 57.895 0.00 0.00 0.00 5.54
4944 8480 0.179100 CAGGACGATTCACAGCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
4945 8481 0.179100 AGGACGATTCACAGCCGATG 60.179 55.000 0.00 0.00 0.00 3.84
4946 8482 0.179111 GGACGATTCACAGCCGATGA 60.179 55.000 0.00 0.00 0.00 2.92
4947 8483 1.539065 GGACGATTCACAGCCGATGAT 60.539 52.381 0.00 0.00 0.00 2.45
4948 8484 2.205074 GACGATTCACAGCCGATGATT 58.795 47.619 0.00 0.00 0.00 2.57
4949 8485 3.381045 GACGATTCACAGCCGATGATTA 58.619 45.455 0.00 0.00 0.00 1.75
4950 8486 3.792401 ACGATTCACAGCCGATGATTAA 58.208 40.909 0.00 0.00 0.00 1.40
4951 8487 4.188462 ACGATTCACAGCCGATGATTAAA 58.812 39.130 0.00 0.00 0.00 1.52
4952 8488 4.816385 ACGATTCACAGCCGATGATTAAAT 59.184 37.500 0.00 0.00 0.00 1.40
4953 8489 5.050091 ACGATTCACAGCCGATGATTAAATC 60.050 40.000 0.00 0.00 0.00 2.17
4954 8490 5.050159 CGATTCACAGCCGATGATTAAATCA 60.050 40.000 0.00 0.00 44.55 2.57
4955 8491 5.739752 TTCACAGCCGATGATTAAATCAG 57.260 39.130 0.00 0.00 43.53 2.90
4956 8492 4.129380 TCACAGCCGATGATTAAATCAGG 58.871 43.478 0.00 0.00 43.53 3.86
4957 8493 2.880890 ACAGCCGATGATTAAATCAGGC 59.119 45.455 12.53 12.53 43.53 4.85
4958 8494 2.227388 CAGCCGATGATTAAATCAGGCC 59.773 50.000 15.12 0.00 43.53 5.19
4959 8495 1.197721 GCCGATGATTAAATCAGGCCG 59.802 52.381 0.00 0.00 43.53 6.13
4960 8496 2.494059 CCGATGATTAAATCAGGCCGT 58.506 47.619 0.00 0.00 43.53 5.68
4961 8497 3.659786 CCGATGATTAAATCAGGCCGTA 58.340 45.455 0.00 0.00 43.53 4.02
4962 8498 3.432252 CCGATGATTAAATCAGGCCGTAC 59.568 47.826 0.00 0.00 43.53 3.67
4963 8499 4.055360 CGATGATTAAATCAGGCCGTACA 58.945 43.478 0.00 0.00 43.53 2.90
4964 8500 4.690748 CGATGATTAAATCAGGCCGTACAT 59.309 41.667 0.00 0.00 43.53 2.29
4965 8501 5.389830 CGATGATTAAATCAGGCCGTACATG 60.390 44.000 0.00 0.00 43.53 3.21
4966 8502 3.563808 TGATTAAATCAGGCCGTACATGC 59.436 43.478 0.00 0.00 33.59 4.06
4967 8503 2.700722 TAAATCAGGCCGTACATGCA 57.299 45.000 0.00 0.00 0.00 3.96
4968 8504 2.057137 AAATCAGGCCGTACATGCAT 57.943 45.000 0.00 0.00 0.00 3.96
4969 8505 2.928801 AATCAGGCCGTACATGCATA 57.071 45.000 0.00 0.00 0.00 3.14
4970 8506 3.423539 AATCAGGCCGTACATGCATAT 57.576 42.857 0.00 0.00 0.00 1.78
4971 8507 2.168326 TCAGGCCGTACATGCATATG 57.832 50.000 0.00 0.00 40.24 1.78
4972 8508 1.691434 TCAGGCCGTACATGCATATGA 59.309 47.619 6.97 4.91 37.73 2.15
4973 8509 2.071540 CAGGCCGTACATGCATATGAG 58.928 52.381 6.97 0.00 37.73 2.90
4974 8510 1.694150 AGGCCGTACATGCATATGAGT 59.306 47.619 6.97 4.08 37.73 3.41
4975 8511 1.800586 GGCCGTACATGCATATGAGTG 59.199 52.381 6.97 6.56 37.73 3.51
4976 8512 2.547855 GGCCGTACATGCATATGAGTGA 60.548 50.000 6.97 0.00 37.73 3.41
4977 8513 3.130633 GCCGTACATGCATATGAGTGAA 58.869 45.455 6.97 0.00 37.73 3.18
4978 8514 3.559655 GCCGTACATGCATATGAGTGAAA 59.440 43.478 6.97 0.00 37.73 2.69
4979 8515 4.552767 GCCGTACATGCATATGAGTGAAAC 60.553 45.833 6.97 7.25 37.73 2.78
4980 8516 4.570369 CCGTACATGCATATGAGTGAAACA 59.430 41.667 6.97 0.00 37.19 2.83
4981 8517 5.064579 CCGTACATGCATATGAGTGAAACAA 59.935 40.000 6.97 0.00 37.19 2.83
4982 8518 5.959527 CGTACATGCATATGAGTGAAACAAC 59.040 40.000 6.97 0.00 37.19 3.32
4983 8519 5.963176 ACATGCATATGAGTGAAACAACA 57.037 34.783 6.97 0.00 37.19 3.33
4984 8520 5.702865 ACATGCATATGAGTGAAACAACAC 58.297 37.500 6.97 0.00 37.19 3.32
4985 8521 5.241285 ACATGCATATGAGTGAAACAACACA 59.759 36.000 6.97 0.00 39.03 3.72
4986 8522 5.361135 TGCATATGAGTGAAACAACACAG 57.639 39.130 6.97 0.00 42.45 3.66
4987 8523 4.216042 TGCATATGAGTGAAACAACACAGG 59.784 41.667 6.97 0.00 42.45 4.00
4988 8524 4.455533 GCATATGAGTGAAACAACACAGGA 59.544 41.667 6.97 0.00 42.45 3.86
4989 8525 5.617751 GCATATGAGTGAAACAACACAGGAC 60.618 44.000 6.97 0.00 42.45 3.85
4990 8526 2.276201 TGAGTGAAACAACACAGGACG 58.724 47.619 0.00 0.00 42.45 4.79
4991 8527 1.003866 GAGTGAAACAACACAGGACGC 60.004 52.381 0.00 0.00 42.45 5.19
4992 8528 1.014352 GTGAAACAACACAGGACGCT 58.986 50.000 0.00 0.00 40.11 5.07
4993 8529 1.013596 TGAAACAACACAGGACGCTG 58.986 50.000 0.00 0.00 0.00 5.18
4994 8530 0.307760 GAAACAACACAGGACGCTGG 59.692 55.000 0.00 0.00 0.00 4.85
4995 8531 0.107410 AAACAACACAGGACGCTGGA 60.107 50.000 0.00 0.00 0.00 3.86
4996 8532 0.108585 AACAACACAGGACGCTGGAT 59.891 50.000 0.00 0.00 0.00 3.41
4997 8533 0.108585 ACAACACAGGACGCTGGATT 59.891 50.000 0.00 0.00 0.00 3.01
4998 8534 1.238439 CAACACAGGACGCTGGATTT 58.762 50.000 0.00 0.00 0.00 2.17
4999 8535 2.224426 ACAACACAGGACGCTGGATTTA 60.224 45.455 0.00 0.00 0.00 1.40
5000 8536 3.009723 CAACACAGGACGCTGGATTTAT 58.990 45.455 0.00 0.00 0.00 1.40
5001 8537 2.632377 ACACAGGACGCTGGATTTATG 58.368 47.619 0.00 0.00 0.00 1.90
5002 8538 2.027192 ACACAGGACGCTGGATTTATGT 60.027 45.455 0.00 0.00 0.00 2.29
5003 8539 3.196901 ACACAGGACGCTGGATTTATGTA 59.803 43.478 0.00 0.00 0.00 2.29
5004 8540 4.141711 ACACAGGACGCTGGATTTATGTAT 60.142 41.667 0.00 0.00 0.00 2.29
5005 8541 4.449068 CACAGGACGCTGGATTTATGTATC 59.551 45.833 0.00 0.00 0.00 2.24
5006 8542 3.675225 CAGGACGCTGGATTTATGTATCG 59.325 47.826 0.00 0.00 0.00 2.92
5007 8543 3.321111 AGGACGCTGGATTTATGTATCGT 59.679 43.478 0.00 0.00 0.00 3.73
5008 8544 3.428870 GGACGCTGGATTTATGTATCGTG 59.571 47.826 0.00 0.00 0.00 4.35
5009 8545 2.800544 ACGCTGGATTTATGTATCGTGC 59.199 45.455 0.00 0.00 0.00 5.34
5010 8546 2.799978 CGCTGGATTTATGTATCGTGCA 59.200 45.455 0.00 0.00 0.00 4.57
5011 8547 3.433274 CGCTGGATTTATGTATCGTGCAT 59.567 43.478 0.00 0.00 0.00 3.96
5012 8548 4.625311 CGCTGGATTTATGTATCGTGCATA 59.375 41.667 0.00 0.00 0.00 3.14
5013 8549 5.444613 CGCTGGATTTATGTATCGTGCATAC 60.445 44.000 0.00 0.00 38.35 2.39
5036 8572 2.992089 GGCACCAGTATCGTCCATG 58.008 57.895 0.00 0.00 0.00 3.66
5037 8573 0.532862 GGCACCAGTATCGTCCATGG 60.533 60.000 4.97 4.97 38.83 3.66
5038 8574 0.464036 GCACCAGTATCGTCCATGGA 59.536 55.000 11.44 11.44 36.62 3.41
5039 8575 1.539065 GCACCAGTATCGTCCATGGAG 60.539 57.143 16.81 9.76 36.62 3.86
5040 8576 0.753262 ACCAGTATCGTCCATGGAGC 59.247 55.000 16.81 9.43 36.62 4.70
5041 8577 0.752658 CCAGTATCGTCCATGGAGCA 59.247 55.000 16.81 4.62 34.60 4.26
5042 8578 1.269988 CCAGTATCGTCCATGGAGCAG 60.270 57.143 16.81 10.10 34.60 4.24
5043 8579 1.410517 CAGTATCGTCCATGGAGCAGT 59.589 52.381 16.81 4.36 0.00 4.40
5044 8580 2.111384 AGTATCGTCCATGGAGCAGTT 58.889 47.619 16.81 7.57 0.00 3.16
5045 8581 2.501723 AGTATCGTCCATGGAGCAGTTT 59.498 45.455 16.81 5.21 0.00 2.66
5046 8582 2.029838 ATCGTCCATGGAGCAGTTTC 57.970 50.000 16.81 0.00 0.00 2.78
5047 8583 0.389817 TCGTCCATGGAGCAGTTTCG 60.390 55.000 16.81 13.50 0.00 3.46
5048 8584 0.670546 CGTCCATGGAGCAGTTTCGT 60.671 55.000 16.81 0.00 0.00 3.85
5049 8585 1.079503 GTCCATGGAGCAGTTTCGTC 58.920 55.000 16.81 0.00 0.00 4.20
5238 8774 1.532868 CTGCCTCCACTTTTGAGTTCG 59.467 52.381 0.00 0.00 0.00 3.95
5274 8811 2.047844 CCCCATAGCTCCATCGCG 60.048 66.667 0.00 0.00 34.40 5.87
5303 8840 2.032178 GTCCATAAATCGAACAGCCAGC 59.968 50.000 0.00 0.00 0.00 4.85
5304 8841 1.003545 CCATAAATCGAACAGCCAGCG 60.004 52.381 0.00 0.00 0.00 5.18
5305 8842 1.933181 CATAAATCGAACAGCCAGCGA 59.067 47.619 0.00 0.00 38.51 4.93
5306 8843 2.087501 TAAATCGAACAGCCAGCGAA 57.912 45.000 0.00 0.00 37.60 4.70
5307 8844 0.517316 AAATCGAACAGCCAGCGAAC 59.483 50.000 0.00 0.00 37.60 3.95
5308 8845 1.298859 AATCGAACAGCCAGCGAACC 61.299 55.000 0.00 0.00 37.60 3.62
5309 8846 2.449031 ATCGAACAGCCAGCGAACCA 62.449 55.000 0.00 0.00 37.60 3.67
5310 8847 2.250939 CGAACAGCCAGCGAACCAA 61.251 57.895 0.00 0.00 0.00 3.67
5311 8848 1.282875 GAACAGCCAGCGAACCAAC 59.717 57.895 0.00 0.00 0.00 3.77
5312 8849 2.130073 GAACAGCCAGCGAACCAACC 62.130 60.000 0.00 0.00 0.00 3.77
5313 8850 2.281761 CAGCCAGCGAACCAACCT 60.282 61.111 0.00 0.00 0.00 3.50
5314 8851 2.281761 AGCCAGCGAACCAACCTG 60.282 61.111 0.00 0.00 0.00 4.00
5315 8852 2.594592 GCCAGCGAACCAACCTGT 60.595 61.111 0.00 0.00 0.00 4.00
5316 8853 2.908073 GCCAGCGAACCAACCTGTG 61.908 63.158 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
408 3622 5.512753 TTTTGCAGCTTAACAACATCAGA 57.487 34.783 0.00 0.00 0.00 3.27
565 3787 1.785353 AAACAGTACCCGTGGCCCAT 61.785 55.000 0.00 0.00 0.00 4.00
822 4045 1.463444 CACCGAATGACCGAAAAGTCC 59.537 52.381 0.00 0.00 35.83 3.85
839 4062 1.374758 CTCGGTGCTTCTGGTCACC 60.375 63.158 1.54 1.54 46.95 4.02
880 4103 3.546724 GAATGGGGGAGAGCTTTTACTC 58.453 50.000 0.00 0.00 36.91 2.59
899 4122 2.238521 GGCCATGTCTGAAGTTTGGAA 58.761 47.619 0.00 0.00 0.00 3.53
960 4191 3.446161 TGTTGCTATTACTACAGGCGACT 59.554 43.478 0.00 0.00 46.44 4.18
962 4193 4.158949 TCTTGTTGCTATTACTACAGGCGA 59.841 41.667 0.00 0.00 0.00 5.54
972 4203 5.977635 TCTGCTAGCTTCTTGTTGCTATTA 58.022 37.500 17.23 0.00 40.43 0.98
991 4222 0.392998 TCGCCCTCCATTTCTTCTGC 60.393 55.000 0.00 0.00 0.00 4.26
992 4223 1.373570 GTCGCCCTCCATTTCTTCTG 58.626 55.000 0.00 0.00 0.00 3.02
1084 4318 0.320771 GGCTTCAACTCTTCGGAGCA 60.321 55.000 0.00 0.00 45.43 4.26
1085 4319 1.355066 CGGCTTCAACTCTTCGGAGC 61.355 60.000 0.00 0.00 45.43 4.70
1089 4323 2.391389 GGGCGGCTTCAACTCTTCG 61.391 63.158 9.56 0.00 0.00 3.79
1096 4330 2.034066 CTTCCTGGGCGGCTTCAA 59.966 61.111 9.56 0.00 0.00 2.69
1113 4347 2.482490 GCATTTGGGATGTTGATCCTGC 60.482 50.000 0.00 0.00 46.88 4.85
1116 4350 1.750778 ACGCATTTGGGATGTTGATCC 59.249 47.619 1.25 0.00 46.99 3.36
1158 4392 2.028337 GGATCCGCTCTTCTCGCC 59.972 66.667 0.00 0.00 0.00 5.54
1323 4557 1.830587 ATCTGACCGAGCAGGCAACA 61.831 55.000 4.95 0.00 46.52 3.33
1329 4563 1.137872 AGCCTTTATCTGACCGAGCAG 59.862 52.381 0.00 0.00 37.24 4.24
1343 4577 2.574006 TGAACAGATGCAGAGCCTTT 57.426 45.000 0.00 0.00 0.00 3.11
1349 4583 4.278919 TGCAAGATTTTGAACAGATGCAGA 59.721 37.500 0.00 0.00 37.61 4.26
1352 4586 6.476243 AATTGCAAGATTTTGAACAGATGC 57.524 33.333 4.94 0.00 36.36 3.91
1357 4591 6.199908 CGTACCAAATTGCAAGATTTTGAACA 59.800 34.615 20.41 6.75 36.36 3.18
1476 4720 1.184431 ATCATCAAATGCCCGCACAA 58.816 45.000 0.00 0.00 0.00 3.33
1478 4722 2.731217 GTTATCATCAAATGCCCGCAC 58.269 47.619 0.00 0.00 0.00 5.34
1482 4726 2.880890 AGCTCGTTATCATCAAATGCCC 59.119 45.455 0.00 0.00 0.00 5.36
1483 4727 3.851105 GCAGCTCGTTATCATCAAATGCC 60.851 47.826 0.00 0.00 0.00 4.40
1484 4728 3.294943 GCAGCTCGTTATCATCAAATGC 58.705 45.455 0.00 0.00 0.00 3.56
1485 4729 3.538780 CGCAGCTCGTTATCATCAAATG 58.461 45.455 0.00 0.00 0.00 2.32
1502 4746 2.565367 GTGCATTTTCTTTTGCGCAG 57.435 45.000 11.31 0.00 46.07 5.18
1504 4748 3.524763 AATGTGCATTTTCTTTTGCGC 57.475 38.095 0.00 0.00 46.76 6.09
1505 4749 4.025061 TGGAAATGTGCATTTTCTTTTGCG 60.025 37.500 18.75 0.00 40.77 4.85
1506 4750 5.007921 AGTGGAAATGTGCATTTTCTTTTGC 59.992 36.000 18.75 10.01 40.77 3.68
1507 4751 6.607735 AGTGGAAATGTGCATTTTCTTTTG 57.392 33.333 18.75 0.00 40.77 2.44
1508 4752 6.822676 TCAAGTGGAAATGTGCATTTTCTTTT 59.177 30.769 18.75 7.98 40.77 2.27
1509 4753 6.347696 TCAAGTGGAAATGTGCATTTTCTTT 58.652 32.000 18.75 8.24 40.77 2.52
1510 4754 5.916318 TCAAGTGGAAATGTGCATTTTCTT 58.084 33.333 18.75 13.60 40.77 2.52
1515 4759 7.714377 TGTAAAATTCAAGTGGAAATGTGCATT 59.286 29.630 0.00 0.00 39.39 3.56
1523 4767 6.334202 GGTGTGTGTAAAATTCAAGTGGAAA 58.666 36.000 0.00 0.00 39.39 3.13
1533 4777 2.803956 CCTCGACGGTGTGTGTAAAATT 59.196 45.455 0.00 0.00 0.00 1.82
1592 4846 8.497745 AGGATACAGATTCCAGATGTAAAACAT 58.502 33.333 0.00 0.00 39.98 2.71
1683 4937 2.520982 TCCCGCCCTCGATTCGAT 60.521 61.111 9.54 0.00 38.10 3.59
1781 5035 5.654603 AGAGAACATGGTCGTTACACATA 57.345 39.130 4.80 0.00 0.00 2.29
1795 5049 3.515562 ACCAGGAGTGAGAAGAGAACAT 58.484 45.455 0.00 0.00 0.00 2.71
1825 5079 4.597507 TCCTACATTCAAACTTCCAGAGGT 59.402 41.667 0.00 0.00 0.00 3.85
1852 5106 0.756294 TCGAGGAAAGGTGCAGACAA 59.244 50.000 0.00 0.00 0.00 3.18
1899 5153 2.512515 AGAATGAAGCGAGCGGCC 60.513 61.111 0.00 0.00 45.17 6.13
1913 5167 4.039730 CAGAAGAGGACACAAAGGAGAGAA 59.960 45.833 0.00 0.00 0.00 2.87
1947 5201 3.767673 TCTGCGTTCTAATACTCCTGGTT 59.232 43.478 0.00 0.00 0.00 3.67
1949 5203 4.592485 ATCTGCGTTCTAATACTCCTGG 57.408 45.455 0.00 0.00 0.00 4.45
1965 5219 2.867624 TCCCATCATTTGCCTATCTGC 58.132 47.619 0.00 0.00 0.00 4.26
1978 5233 3.723154 TCAGATCATTTGGGATCCCATCA 59.277 43.478 34.21 23.44 46.64 3.07
1998 5253 1.960417 TGGCATTTGTCAGTTCGTCA 58.040 45.000 0.00 0.00 0.00 4.35
2005 5260 6.567050 ACTAGCATATTTTGGCATTTGTCAG 58.433 36.000 0.00 0.00 0.00 3.51
2012 5267 6.096282 ACGGTAAAACTAGCATATTTTGGCAT 59.904 34.615 0.00 0.00 30.80 4.40
2015 5270 7.758495 AGAACGGTAAAACTAGCATATTTTGG 58.242 34.615 0.00 0.00 30.80 3.28
2095 5350 1.134007 TGCGGATGAGCCAAGATGATT 60.134 47.619 0.00 0.00 35.94 2.57
2120 5375 5.502544 GCGTAATGTCTTGCAGAATAAGGTC 60.503 44.000 0.00 0.00 0.00 3.85
2154 5409 2.916640 TCAACTGCATGTGTCTTGTCA 58.083 42.857 0.00 0.00 0.00 3.58
2180 5435 9.626045 GTTAGGATCATAAACTTCTGGTTTTTG 57.374 33.333 0.58 2.94 44.77 2.44
2181 5436 9.588096 AGTTAGGATCATAAACTTCTGGTTTTT 57.412 29.630 0.58 0.00 44.77 1.94
2186 5441 8.049721 AGGAAAGTTAGGATCATAAACTTCTGG 58.950 37.037 15.47 0.00 41.36 3.86
2249 5513 8.499403 AGCAAAAGTCTTGGTATAATTCTCTC 57.501 34.615 0.00 0.00 0.00 3.20
2270 5534 1.956477 GCTGGGAGAAAAGACAAGCAA 59.044 47.619 0.00 0.00 0.00 3.91
2400 5665 8.434392 TCCACCTTCTTAAGTTGTTATTACAGT 58.566 33.333 1.63 0.00 35.28 3.55
2416 5681 5.424252 TCATCCTAAATACGTCCACCTTCTT 59.576 40.000 0.00 0.00 0.00 2.52
2479 5744 2.627515 TGGGCTCTATGCAGTTCATC 57.372 50.000 0.00 0.00 45.15 2.92
2485 5750 0.250640 GGTGGATGGGCTCTATGCAG 60.251 60.000 0.00 0.00 45.15 4.41
2503 5773 4.344102 TCCCCTAACTTTCTCGTATGATGG 59.656 45.833 0.00 0.00 0.00 3.51
2509 5779 9.151177 ACATTTATATCCCCTAACTTTCTCGTA 57.849 33.333 0.00 0.00 0.00 3.43
2510 5780 8.030913 ACATTTATATCCCCTAACTTTCTCGT 57.969 34.615 0.00 0.00 0.00 4.18
2546 5866 5.046159 TGTTCCGGATGGTAATGTCTTTACT 60.046 40.000 4.15 0.00 40.14 2.24
2554 5874 3.540617 TGATGTGTTCCGGATGGTAATG 58.459 45.455 4.15 0.00 36.30 1.90
2683 6008 9.261180 GCAGTTAGTTAATATGCAATCACTCTA 57.739 33.333 0.00 0.00 36.88 2.43
2938 6263 9.399797 TCTGCATTATTTGATTTGTATCTGTCT 57.600 29.630 0.00 0.00 0.00 3.41
2952 6277 4.142337 TGAGCACCATGTCTGCATTATTTG 60.142 41.667 13.51 0.00 37.08 2.32
2970 6295 1.608055 CCATTGACAGTTGGTGAGCA 58.392 50.000 0.00 0.00 0.00 4.26
3096 6421 1.985614 CTCCCATCTGTGTGCAGGA 59.014 57.895 0.00 0.00 42.78 3.86
3315 6646 3.450904 AGCAAGGGATGAACAGGTACTA 58.549 45.455 0.00 0.00 36.02 1.82
3338 6669 7.806690 TGCAATCTAATCTGTGAAGTTAACAC 58.193 34.615 8.61 2.22 38.55 3.32
3377 6711 6.632909 TGAGAAATGAAAATCGGATGCAAAT 58.367 32.000 0.00 0.00 0.00 2.32
3379 6713 5.393352 CCTGAGAAATGAAAATCGGATGCAA 60.393 40.000 0.00 0.00 0.00 4.08
3383 6732 7.651027 AAATCCTGAGAAATGAAAATCGGAT 57.349 32.000 0.00 0.00 31.20 4.18
3385 6734 7.702348 GGTAAAATCCTGAGAAATGAAAATCGG 59.298 37.037 0.00 0.00 0.00 4.18
3388 6737 8.028938 CACGGTAAAATCCTGAGAAATGAAAAT 58.971 33.333 0.00 0.00 0.00 1.82
3465 6815 1.878734 GCTTGCCATCCAGATCTTAGC 59.121 52.381 0.00 0.00 0.00 3.09
3468 6818 0.924823 AGGCTTGCCATCCAGATCTT 59.075 50.000 14.54 0.00 0.00 2.40
3483 6833 3.623060 CGTACTACAATTGCATGAAGGCT 59.377 43.478 5.05 0.00 34.04 4.58
3554 6904 8.156994 TGTTTTTACCGAGCTAATAACAGTTT 57.843 30.769 0.00 0.00 29.54 2.66
3557 6907 6.183360 CCCTGTTTTTACCGAGCTAATAACAG 60.183 42.308 16.89 16.89 41.07 3.16
3564 6914 2.259012 TCCCCTGTTTTTACCGAGCTA 58.741 47.619 0.00 0.00 0.00 3.32
3570 6920 6.492429 ACAATACTCTTTCCCCTGTTTTTACC 59.508 38.462 0.00 0.00 0.00 2.85
3574 6924 7.418597 GGAAAACAATACTCTTTCCCCTGTTTT 60.419 37.037 9.14 9.14 44.07 2.43
3575 6925 6.041637 GGAAAACAATACTCTTTCCCCTGTTT 59.958 38.462 2.05 0.00 41.46 2.83
3577 6927 5.077564 GGAAAACAATACTCTTTCCCCTGT 58.922 41.667 2.05 0.00 41.46 4.00
3589 6944 4.546570 GCACTCTTGTGGGAAAACAATAC 58.453 43.478 0.00 0.00 43.97 1.89
3590 6945 4.846779 GCACTCTTGTGGGAAAACAATA 57.153 40.909 0.00 0.00 43.97 1.90
3620 6975 3.005897 TCGTAAGTTCTTCAGCTTCTGCT 59.994 43.478 0.00 0.00 45.42 4.24
3846 7202 1.651240 CTCGCAGAATTGGTGGCCAG 61.651 60.000 5.11 0.00 31.61 4.85
3933 7290 4.507916 TCTCCTCGCTCCTCCCCG 62.508 72.222 0.00 0.00 0.00 5.73
4039 7396 3.665675 ATCGCGGGAGAAGTGTGGC 62.666 63.158 6.13 0.00 0.00 5.01
4079 7436 2.819608 TCATTTGCAAGGTCTGTTAGGC 59.180 45.455 0.00 0.00 0.00 3.93
4081 7438 6.017400 ACAATCATTTGCAAGGTCTGTTAG 57.983 37.500 0.00 0.00 36.22 2.34
4082 7439 7.701539 ATACAATCATTTGCAAGGTCTGTTA 57.298 32.000 0.00 0.00 36.22 2.41
4084 7441 6.594788 AATACAATCATTTGCAAGGTCTGT 57.405 33.333 0.00 4.08 36.22 3.41
4095 7452 7.719633 AGGGTATCTACGCAAATACAATCATTT 59.280 33.333 7.11 0.00 41.10 2.32
4096 7453 7.224297 AGGGTATCTACGCAAATACAATCATT 58.776 34.615 7.11 0.00 41.10 2.57
4100 7457 5.989777 GTGAGGGTATCTACGCAAATACAAT 59.010 40.000 7.11 0.00 41.10 2.71
4113 7470 3.532232 TGGAGAAGTAGGTGAGGGTATCT 59.468 47.826 0.00 0.00 0.00 1.98
4124 7481 5.819901 GGACATTGAGAAATGGAGAAGTAGG 59.180 44.000 3.70 0.00 34.56 3.18
4129 7486 4.002982 CACGGACATTGAGAAATGGAGAA 58.997 43.478 3.70 0.00 34.56 2.87
4132 7489 2.039746 ACCACGGACATTGAGAAATGGA 59.960 45.455 3.70 0.00 34.56 3.41
4133 7490 2.162208 CACCACGGACATTGAGAAATGG 59.838 50.000 3.70 0.00 34.56 3.16
4183 7542 7.266922 TCACCGCAAGAATATTTATTTACCC 57.733 36.000 0.00 0.00 43.02 3.69
4186 7545 6.770785 AGGCTCACCGCAAGAATATTTATTTA 59.229 34.615 0.00 0.00 42.76 1.40
4187 7546 5.594317 AGGCTCACCGCAAGAATATTTATTT 59.406 36.000 0.00 0.00 42.76 1.40
4190 7549 3.876914 CAGGCTCACCGCAAGAATATTTA 59.123 43.478 0.00 0.00 42.76 1.40
4202 7564 2.107950 TAAATCAACCAGGCTCACCG 57.892 50.000 0.00 0.00 42.76 4.94
4262 7624 9.149225 CCATAATAATGAAGAAATCGAGAGAGG 57.851 37.037 0.00 0.00 38.42 3.69
4318 7711 3.648545 AGAGAAGCCTTGTAAACTCACCT 59.351 43.478 0.00 0.00 0.00 4.00
4325 7718 3.403038 GCTGTCAGAGAAGCCTTGTAAA 58.597 45.455 3.32 0.00 33.12 2.01
4337 7730 1.803519 GCCGACTTCGCTGTCAGAG 60.804 63.158 3.32 0.00 36.82 3.35
4372 7765 9.485206 ACTTATTTACATGACGTAACTTGAAGT 57.515 29.630 0.00 0.00 39.84 3.01
4386 7779 6.035650 TCCGCTCGAAAAGACTTATTTACATG 59.964 38.462 0.00 0.00 0.00 3.21
4390 7783 8.761497 CATTATCCGCTCGAAAAGACTTATTTA 58.239 33.333 0.00 0.00 0.00 1.40
4426 7819 7.176589 GGGAATCCCACTCTACTAGATTATG 57.823 44.000 14.67 0.00 44.65 1.90
4446 7839 1.305213 GGCTTGGAGCAATGGGGAA 60.305 57.895 2.04 0.00 44.75 3.97
4452 7845 1.377725 CTCCGTGGCTTGGAGCAAT 60.378 57.895 11.70 0.00 45.99 3.56
4475 7876 5.780793 AGAATAACAGTTGTACAGACTCCCT 59.219 40.000 0.00 0.00 0.00 4.20
4493 7894 2.417586 TCGAGCGTCGTCAGAAGAATAA 59.582 45.455 7.16 0.00 41.35 1.40
4505 7909 0.663568 ACCTTCAAACTCGAGCGTCG 60.664 55.000 13.61 0.00 42.10 5.12
4522 7926 6.712095 TCCACAATTTGATATGCTAGATGACC 59.288 38.462 2.79 0.00 0.00 4.02
4587 7992 4.214545 TGTCCGTTTGGTGTGAATATTGTC 59.785 41.667 0.00 0.00 36.30 3.18
4591 7996 2.739913 CGTGTCCGTTTGGTGTGAATAT 59.260 45.455 0.00 0.00 36.30 1.28
4762 8167 8.494433 TCCCTTCATAAACTAATACAAGAGCAT 58.506 33.333 0.00 0.00 0.00 3.79
4763 8168 7.857456 TCCCTTCATAAACTAATACAAGAGCA 58.143 34.615 0.00 0.00 0.00 4.26
4764 8169 7.988028 ACTCCCTTCATAAACTAATACAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
4767 8172 9.262358 GCTACTCCCTTCATAAACTAATACAAG 57.738 37.037 0.00 0.00 0.00 3.16
4768 8173 8.989131 AGCTACTCCCTTCATAAACTAATACAA 58.011 33.333 0.00 0.00 0.00 2.41
4770 8175 9.833917 AAAGCTACTCCCTTCATAAACTAATAC 57.166 33.333 0.00 0.00 0.00 1.89
4771 8176 9.832445 CAAAGCTACTCCCTTCATAAACTAATA 57.168 33.333 0.00 0.00 0.00 0.98
4772 8177 8.329502 ACAAAGCTACTCCCTTCATAAACTAAT 58.670 33.333 0.00 0.00 0.00 1.73
4773 8178 7.686434 ACAAAGCTACTCCCTTCATAAACTAA 58.314 34.615 0.00 0.00 0.00 2.24
4775 8180 6.128138 ACAAAGCTACTCCCTTCATAAACT 57.872 37.500 0.00 0.00 0.00 2.66
4778 8183 9.778741 CATATTACAAAGCTACTCCCTTCATAA 57.221 33.333 0.00 0.00 0.00 1.90
4780 8185 8.034313 TCATATTACAAAGCTACTCCCTTCAT 57.966 34.615 0.00 0.00 0.00 2.57
4782 8187 7.389053 CCATCATATTACAAAGCTACTCCCTTC 59.611 40.741 0.00 0.00 0.00 3.46
4783 8188 7.072454 TCCATCATATTACAAAGCTACTCCCTT 59.928 37.037 0.00 0.00 0.00 3.95
4785 8190 6.769512 TCCATCATATTACAAAGCTACTCCC 58.230 40.000 0.00 0.00 0.00 4.30
4786 8191 8.854614 AATCCATCATATTACAAAGCTACTCC 57.145 34.615 0.00 0.00 0.00 3.85
4787 8192 9.494271 TGAATCCATCATATTACAAAGCTACTC 57.506 33.333 0.00 0.00 31.50 2.59
4893 8429 3.119743 TGTGCATAGCATGACTCTTTTGC 60.120 43.478 0.00 2.80 41.91 3.68
4894 8430 4.409570 GTGTGCATAGCATGACTCTTTTG 58.590 43.478 0.00 0.00 41.91 2.44
4895 8431 3.125829 CGTGTGCATAGCATGACTCTTTT 59.874 43.478 0.00 0.00 41.91 2.27
4896 8432 2.674852 CGTGTGCATAGCATGACTCTTT 59.325 45.455 0.00 0.00 41.91 2.52
4897 8433 2.094026 TCGTGTGCATAGCATGACTCTT 60.094 45.455 0.00 0.00 41.91 2.85
4898 8434 1.478105 TCGTGTGCATAGCATGACTCT 59.522 47.619 0.00 0.00 41.91 3.24
4899 8435 1.926561 TCGTGTGCATAGCATGACTC 58.073 50.000 0.00 0.00 41.91 3.36
4900 8436 2.609427 ATCGTGTGCATAGCATGACT 57.391 45.000 0.00 0.00 41.91 3.41
4901 8437 4.794248 TTTATCGTGTGCATAGCATGAC 57.206 40.909 0.00 0.00 41.91 3.06
4902 8438 5.526846 TGATTTTATCGTGTGCATAGCATGA 59.473 36.000 0.00 0.00 41.91 3.07
4903 8439 5.750650 TGATTTTATCGTGTGCATAGCATG 58.249 37.500 0.00 0.00 41.91 4.06
4904 8440 5.049198 CCTGATTTTATCGTGTGCATAGCAT 60.049 40.000 0.00 0.00 41.91 3.79
4905 8441 4.273235 CCTGATTTTATCGTGTGCATAGCA 59.727 41.667 0.00 0.00 35.60 3.49
4906 8442 4.511454 TCCTGATTTTATCGTGTGCATAGC 59.489 41.667 0.00 0.00 0.00 2.97
4907 8443 5.332581 CGTCCTGATTTTATCGTGTGCATAG 60.333 44.000 0.00 0.00 0.00 2.23
4908 8444 4.506288 CGTCCTGATTTTATCGTGTGCATA 59.494 41.667 0.00 0.00 0.00 3.14
4909 8445 3.309682 CGTCCTGATTTTATCGTGTGCAT 59.690 43.478 0.00 0.00 0.00 3.96
4910 8446 2.670905 CGTCCTGATTTTATCGTGTGCA 59.329 45.455 0.00 0.00 0.00 4.57
4911 8447 2.927477 TCGTCCTGATTTTATCGTGTGC 59.073 45.455 0.00 0.00 0.00 4.57
4912 8448 5.718649 AATCGTCCTGATTTTATCGTGTG 57.281 39.130 0.00 0.00 45.06 3.82
4923 8459 0.179100 CGGCTGTGAATCGTCCTGAT 60.179 55.000 0.00 0.00 39.67 2.90
4924 8460 1.215382 CGGCTGTGAATCGTCCTGA 59.785 57.895 0.00 0.00 0.00 3.86
4925 8461 0.179100 ATCGGCTGTGAATCGTCCTG 60.179 55.000 0.00 0.00 0.00 3.86
4926 8462 0.179100 CATCGGCTGTGAATCGTCCT 60.179 55.000 0.00 0.00 0.00 3.85
4927 8463 0.179111 TCATCGGCTGTGAATCGTCC 60.179 55.000 0.00 0.00 0.00 4.79
4928 8464 1.858091 ATCATCGGCTGTGAATCGTC 58.142 50.000 0.00 0.00 0.00 4.20
4929 8465 2.315925 AATCATCGGCTGTGAATCGT 57.684 45.000 0.00 0.00 0.00 3.73
4930 8466 4.794248 TTTAATCATCGGCTGTGAATCG 57.206 40.909 0.00 0.00 0.00 3.34
4931 8467 6.304356 TGATTTAATCATCGGCTGTGAATC 57.696 37.500 3.20 0.00 33.59 2.52
4932 8468 5.240183 CCTGATTTAATCATCGGCTGTGAAT 59.760 40.000 8.17 0.00 38.85 2.57
4933 8469 4.576053 CCTGATTTAATCATCGGCTGTGAA 59.424 41.667 8.17 0.00 38.85 3.18
4934 8470 4.129380 CCTGATTTAATCATCGGCTGTGA 58.871 43.478 8.17 0.00 38.85 3.58
4935 8471 3.304257 GCCTGATTTAATCATCGGCTGTG 60.304 47.826 22.88 5.59 38.63 3.66
4936 8472 2.880890 GCCTGATTTAATCATCGGCTGT 59.119 45.455 22.88 0.00 38.63 4.40
4937 8473 2.227388 GGCCTGATTTAATCATCGGCTG 59.773 50.000 26.47 9.42 40.14 4.85
4938 8474 2.508526 GGCCTGATTTAATCATCGGCT 58.491 47.619 26.47 0.00 40.14 5.52
4939 8475 1.197721 CGGCCTGATTTAATCATCGGC 59.802 52.381 22.38 22.38 39.83 5.54
4940 8476 2.494059 ACGGCCTGATTTAATCATCGG 58.506 47.619 20.29 15.25 38.85 4.18
4941 8477 4.055360 TGTACGGCCTGATTTAATCATCG 58.945 43.478 8.17 13.85 38.85 3.84
4942 8478 5.617751 GCATGTACGGCCTGATTTAATCATC 60.618 44.000 8.17 3.82 38.85 2.92
4943 8479 4.216257 GCATGTACGGCCTGATTTAATCAT 59.784 41.667 8.17 0.00 38.85 2.45
4944 8480 3.563808 GCATGTACGGCCTGATTTAATCA 59.436 43.478 7.46 7.46 37.76 2.57
4945 8481 3.563808 TGCATGTACGGCCTGATTTAATC 59.436 43.478 0.00 0.00 0.00 1.75
4946 8482 3.550820 TGCATGTACGGCCTGATTTAAT 58.449 40.909 0.00 0.00 0.00 1.40
4947 8483 2.992593 TGCATGTACGGCCTGATTTAA 58.007 42.857 0.00 0.00 0.00 1.52
4948 8484 2.700722 TGCATGTACGGCCTGATTTA 57.299 45.000 0.00 0.00 0.00 1.40
4949 8485 2.057137 ATGCATGTACGGCCTGATTT 57.943 45.000 0.00 0.00 0.00 2.17
4950 8486 2.928801 TATGCATGTACGGCCTGATT 57.071 45.000 10.16 0.00 0.00 2.57
4951 8487 2.302733 TCATATGCATGTACGGCCTGAT 59.697 45.455 10.16 0.00 33.57 2.90
4952 8488 1.691434 TCATATGCATGTACGGCCTGA 59.309 47.619 10.16 5.05 33.57 3.86
4953 8489 2.071540 CTCATATGCATGTACGGCCTG 58.928 52.381 10.16 0.00 33.57 4.85
4954 8490 1.694150 ACTCATATGCATGTACGGCCT 59.306 47.619 10.16 0.42 33.57 5.19
4955 8491 1.800586 CACTCATATGCATGTACGGCC 59.199 52.381 10.16 0.00 33.57 6.13
4956 8492 2.754472 TCACTCATATGCATGTACGGC 58.246 47.619 10.16 2.60 33.57 5.68
4957 8493 4.570369 TGTTTCACTCATATGCATGTACGG 59.430 41.667 10.16 0.00 33.57 4.02
4958 8494 5.717038 TGTTTCACTCATATGCATGTACG 57.283 39.130 10.16 0.00 33.57 3.67
4959 8495 6.742718 GTGTTGTTTCACTCATATGCATGTAC 59.257 38.462 10.16 0.00 35.68 2.90
4960 8496 6.429385 TGTGTTGTTTCACTCATATGCATGTA 59.571 34.615 10.16 0.00 38.90 2.29
4961 8497 5.241285 TGTGTTGTTTCACTCATATGCATGT 59.759 36.000 10.16 0.00 38.90 3.21
4962 8498 5.701855 TGTGTTGTTTCACTCATATGCATG 58.298 37.500 10.16 0.00 38.90 4.06
4963 8499 5.106038 CCTGTGTTGTTTCACTCATATGCAT 60.106 40.000 3.79 3.79 38.90 3.96
4964 8500 4.216042 CCTGTGTTGTTTCACTCATATGCA 59.784 41.667 0.00 0.00 38.90 3.96
4965 8501 4.455533 TCCTGTGTTGTTTCACTCATATGC 59.544 41.667 0.00 0.00 38.90 3.14
4966 8502 5.389830 CGTCCTGTGTTGTTTCACTCATATG 60.390 44.000 0.00 0.00 38.90 1.78
4967 8503 4.690748 CGTCCTGTGTTGTTTCACTCATAT 59.309 41.667 0.00 0.00 38.90 1.78
4968 8504 4.055360 CGTCCTGTGTTGTTTCACTCATA 58.945 43.478 0.00 0.00 38.90 2.15
4969 8505 2.872245 CGTCCTGTGTTGTTTCACTCAT 59.128 45.455 0.00 0.00 38.90 2.90
4970 8506 2.276201 CGTCCTGTGTTGTTTCACTCA 58.724 47.619 0.00 0.00 38.90 3.41
4971 8507 1.003866 GCGTCCTGTGTTGTTTCACTC 60.004 52.381 0.00 0.00 38.90 3.51
4972 8508 1.014352 GCGTCCTGTGTTGTTTCACT 58.986 50.000 0.00 0.00 38.90 3.41
4973 8509 1.014352 AGCGTCCTGTGTTGTTTCAC 58.986 50.000 0.00 0.00 38.63 3.18
4974 8510 1.013596 CAGCGTCCTGTGTTGTTTCA 58.986 50.000 0.00 0.00 34.31 2.69
4975 8511 0.307760 CCAGCGTCCTGTGTTGTTTC 59.692 55.000 0.00 0.00 37.38 2.78
4976 8512 0.107410 TCCAGCGTCCTGTGTTGTTT 60.107 50.000 0.00 0.00 37.38 2.83
4977 8513 0.108585 ATCCAGCGTCCTGTGTTGTT 59.891 50.000 0.00 0.00 37.38 2.83
4978 8514 0.108585 AATCCAGCGTCCTGTGTTGT 59.891 50.000 0.00 0.00 37.38 3.32
4979 8515 1.238439 AAATCCAGCGTCCTGTGTTG 58.762 50.000 0.00 0.00 37.38 3.33
4980 8516 2.851263 TAAATCCAGCGTCCTGTGTT 57.149 45.000 0.00 0.00 37.38 3.32
4981 8517 2.027192 ACATAAATCCAGCGTCCTGTGT 60.027 45.455 0.00 0.00 37.38 3.72
4982 8518 2.632377 ACATAAATCCAGCGTCCTGTG 58.368 47.619 0.00 0.00 37.38 3.66
4983 8519 4.632153 GATACATAAATCCAGCGTCCTGT 58.368 43.478 0.00 0.00 37.38 4.00
4984 8520 3.675225 CGATACATAAATCCAGCGTCCTG 59.325 47.826 0.00 0.00 38.85 3.86
4985 8521 3.321111 ACGATACATAAATCCAGCGTCCT 59.679 43.478 0.00 0.00 0.00 3.85
4986 8522 3.428870 CACGATACATAAATCCAGCGTCC 59.571 47.826 0.00 0.00 0.00 4.79
4987 8523 3.120991 GCACGATACATAAATCCAGCGTC 60.121 47.826 0.00 0.00 0.00 5.19
4988 8524 2.800544 GCACGATACATAAATCCAGCGT 59.199 45.455 0.00 0.00 0.00 5.07
4989 8525 2.799978 TGCACGATACATAAATCCAGCG 59.200 45.455 0.00 0.00 0.00 5.18
4990 8526 5.858475 GTATGCACGATACATAAATCCAGC 58.142 41.667 0.00 0.00 37.47 4.85
5007 8543 3.657448 CTGGTGCCCGACGTATGCA 62.657 63.158 2.34 2.34 0.00 3.96
5008 8544 2.287457 TACTGGTGCCCGACGTATGC 62.287 60.000 0.00 0.00 0.00 3.14
5009 8545 0.387929 ATACTGGTGCCCGACGTATG 59.612 55.000 0.00 0.00 0.00 2.39
5010 8546 0.672342 GATACTGGTGCCCGACGTAT 59.328 55.000 0.00 0.00 0.00 3.06
5011 8547 1.717791 CGATACTGGTGCCCGACGTA 61.718 60.000 0.00 0.00 0.00 3.57
5012 8548 2.890371 GATACTGGTGCCCGACGT 59.110 61.111 0.00 0.00 0.00 4.34
5013 8549 2.278596 CGATACTGGTGCCCGACG 60.279 66.667 0.00 0.00 0.00 5.12
5014 8550 1.226888 GACGATACTGGTGCCCGAC 60.227 63.158 0.00 0.00 0.00 4.79
5015 8551 2.420568 GGACGATACTGGTGCCCGA 61.421 63.158 0.00 0.00 0.00 5.14
5016 8552 2.028125 ATGGACGATACTGGTGCCCG 62.028 60.000 0.00 0.00 0.00 6.13
5017 8553 0.532862 CATGGACGATACTGGTGCCC 60.533 60.000 0.00 0.00 0.00 5.36
5018 8554 0.532862 CCATGGACGATACTGGTGCC 60.533 60.000 5.56 0.00 0.00 5.01
5019 8555 0.464036 TCCATGGACGATACTGGTGC 59.536 55.000 11.44 0.00 0.00 5.01
5020 8556 1.539065 GCTCCATGGACGATACTGGTG 60.539 57.143 11.44 0.00 0.00 4.17
5021 8557 0.753262 GCTCCATGGACGATACTGGT 59.247 55.000 11.44 0.00 0.00 4.00
5022 8558 0.752658 TGCTCCATGGACGATACTGG 59.247 55.000 11.44 0.00 0.00 4.00
5023 8559 1.410517 ACTGCTCCATGGACGATACTG 59.589 52.381 11.44 0.00 0.00 2.74
5024 8560 1.781786 ACTGCTCCATGGACGATACT 58.218 50.000 11.44 0.00 0.00 2.12
5025 8561 2.604046 AACTGCTCCATGGACGATAC 57.396 50.000 11.44 0.00 0.00 2.24
5026 8562 2.481276 CGAAACTGCTCCATGGACGATA 60.481 50.000 11.44 0.00 0.00 2.92
5027 8563 1.740380 CGAAACTGCTCCATGGACGAT 60.740 52.381 11.44 0.00 0.00 3.73
5028 8564 0.389817 CGAAACTGCTCCATGGACGA 60.390 55.000 11.44 0.00 0.00 4.20
5029 8565 0.670546 ACGAAACTGCTCCATGGACG 60.671 55.000 11.44 13.61 0.00 4.79
5030 8566 1.079503 GACGAAACTGCTCCATGGAC 58.920 55.000 11.44 8.83 0.00 4.02
5031 8567 0.684535 TGACGAAACTGCTCCATGGA 59.315 50.000 15.27 15.27 0.00 3.41
5032 8568 1.081892 CTGACGAAACTGCTCCATGG 58.918 55.000 4.97 4.97 0.00 3.66
5033 8569 0.445436 GCTGACGAAACTGCTCCATG 59.555 55.000 0.00 0.00 33.20 3.66
5034 8570 0.035317 TGCTGACGAAACTGCTCCAT 59.965 50.000 0.00 0.00 36.10 3.41
5035 8571 0.179059 TTGCTGACGAAACTGCTCCA 60.179 50.000 0.00 0.00 36.10 3.86
5036 8572 0.944386 TTTGCTGACGAAACTGCTCC 59.056 50.000 0.00 0.00 36.10 4.70
5037 8573 2.755836 TTTTGCTGACGAAACTGCTC 57.244 45.000 0.00 0.00 36.10 4.26
5160 8696 6.070995 ACAATGCTTTCAATCTCCACATCAAT 60.071 34.615 0.00 0.00 0.00 2.57
5179 8715 4.878397 AGCCTAGACAGACATAAACAATGC 59.122 41.667 0.00 0.00 39.39 3.56
5238 8774 3.178611 CCCACCCCTATGCCTCCC 61.179 72.222 0.00 0.00 0.00 4.30
5274 8811 5.047847 TGTTCGATTTATGGACGATTCCTC 58.952 41.667 0.00 0.00 43.31 3.71
5287 8824 1.730064 GTTCGCTGGCTGTTCGATTTA 59.270 47.619 0.00 0.00 31.96 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.