Multiple sequence alignment - TraesCS3B01G315400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G315400 chr3B 100.000 7423 0 0 1 7423 507268588 507276010 0.000000e+00 13708.0
1 TraesCS3B01G315400 chr3B 89.474 95 9 1 4292 4386 414024448 414024541 1.310000e-22 119.0
2 TraesCS3B01G315400 chr3B 91.860 86 4 3 5837 5920 569597883 569597967 4.710000e-22 117.0
3 TraesCS3B01G315400 chr3B 100.000 47 0 0 6445 6491 507274988 507275034 3.690000e-13 87.9
4 TraesCS3B01G315400 chr3B 100.000 47 0 0 6401 6447 507275032 507275078 3.690000e-13 87.9
5 TraesCS3B01G315400 chr3A 94.308 3795 118 31 417 4175 510589652 510593384 0.000000e+00 5722.0
6 TraesCS3B01G315400 chr3A 95.080 1687 67 8 4193 5868 510594208 510595889 0.000000e+00 2641.0
7 TraesCS3B01G315400 chr3A 92.735 702 42 8 6728 7420 510596898 510597599 0.000000e+00 1005.0
8 TraesCS3B01G315400 chr3A 94.421 484 24 3 5966 6447 510596058 510596540 0.000000e+00 741.0
9 TraesCS3B01G315400 chr3A 96.127 284 10 1 6445 6728 510596494 510596776 5.250000e-126 462.0
10 TraesCS3B01G315400 chr3A 89.756 205 9 5 1 205 510589350 510589542 1.240000e-62 252.0
11 TraesCS3B01G315400 chr3A 88.889 99 6 4 4292 4389 684885505 684885599 4.710000e-22 117.0
12 TraesCS3B01G315400 chr3A 96.970 66 2 0 5904 5969 510595888 510595953 2.190000e-20 111.0
13 TraesCS3B01G315400 chr3A 95.455 66 2 1 348 413 510589559 510589623 3.660000e-18 104.0
14 TraesCS3B01G315400 chr3D 94.856 2877 107 13 3024 5868 389907929 389910796 0.000000e+00 4455.0
15 TraesCS3B01G315400 chr3D 94.316 2674 84 24 348 2973 389905293 389907946 0.000000e+00 4034.0
16 TraesCS3B01G315400 chr3D 90.234 983 43 16 6445 7420 389911379 389912315 0.000000e+00 1234.0
17 TraesCS3B01G315400 chr3D 96.074 484 17 2 5966 6447 389910942 389911425 0.000000e+00 787.0
18 TraesCS3B01G315400 chr3D 93.750 192 11 1 1 191 389905076 389905267 3.390000e-73 287.0
19 TraesCS3B01G315400 chr3D 94.595 111 3 3 237 346 85001905 85002013 1.280000e-37 169.0
20 TraesCS3B01G315400 chr3D 89.796 98 9 1 4292 4389 307228935 307228839 2.810000e-24 124.0
21 TraesCS3B01G315400 chr3D 89.899 99 5 4 4292 4389 548016172 548016266 1.010000e-23 122.0
22 TraesCS3B01G315400 chr3D 95.455 66 3 0 5904 5969 389910795 389910860 1.020000e-18 106.0
23 TraesCS3B01G315400 chr6A 91.881 739 49 8 6689 7420 74501263 74501997 0.000000e+00 1022.0
24 TraesCS3B01G315400 chr6A 97.619 42 1 0 5928 5969 563547994 563548035 1.030000e-08 73.1
25 TraesCS3B01G315400 chr6A 100.000 29 0 0 5933 5961 39144915 39144943 4.000000e-03 54.7
26 TraesCS3B01G315400 chr1A 76.476 1152 228 29 1566 2703 534245696 534244574 2.980000e-163 586.0
27 TraesCS3B01G315400 chr1A 74.504 655 147 13 4433 5085 534242870 534242234 4.420000e-67 267.0
28 TraesCS3B01G315400 chr1A 80.321 249 45 3 3147 3392 534244181 534243934 1.270000e-42 185.0
29 TraesCS3B01G315400 chr1A 87.368 95 10 2 5838 5930 57407820 57407726 2.830000e-19 108.0
30 TraesCS3B01G315400 chr1B 76.059 1157 233 29 1566 2703 592847278 592848409 5.030000e-156 562.0
31 TraesCS3B01G315400 chr1B 77.628 371 72 10 4433 4799 592850145 592850508 1.620000e-51 215.0
32 TraesCS3B01G315400 chr1B 82.759 232 38 2 3147 3377 592848803 592849033 9.760000e-49 206.0
33 TraesCS3B01G315400 chr1D 75.972 1157 237 31 1566 2703 437443872 437445006 6.510000e-155 558.0
34 TraesCS3B01G315400 chr1D 74.238 656 148 15 4433 5085 437446736 437447373 9.560000e-64 255.0
35 TraesCS3B01G315400 chr1D 82.731 249 39 4 3147 3392 437445398 437445645 1.250000e-52 219.0
36 TraesCS3B01G315400 chr7A 94.231 104 4 2 237 340 1951501 1951602 2.770000e-34 158.0
37 TraesCS3B01G315400 chr7A 91.860 86 6 1 5839 5923 168374385 168374300 1.310000e-22 119.0
38 TraesCS3B01G315400 chr2D 90.000 110 8 3 237 346 107029455 107029561 1.000000e-28 139.0
39 TraesCS3B01G315400 chr2D 88.288 111 8 4 239 346 461804202 461804310 2.170000e-25 128.0
40 TraesCS3B01G315400 chr2D 95.238 42 2 0 5928 5969 5773102 5773143 4.810000e-07 67.6
41 TraesCS3B01G315400 chr6D 89.189 111 9 3 237 346 3104258 3104150 1.300000e-27 135.0
42 TraesCS3B01G315400 chr4A 88.889 108 10 2 4284 4391 37060104 37060209 1.680000e-26 132.0
43 TraesCS3B01G315400 chr4D 88.073 109 10 2 4284 4391 429472361 429472255 7.820000e-25 126.0
44 TraesCS3B01G315400 chr5B 88.889 99 10 1 4292 4390 705615726 705615823 3.640000e-23 121.0
45 TraesCS3B01G315400 chr5B 90.000 90 6 3 5839 5927 584172627 584172714 6.090000e-21 113.0
46 TraesCS3B01G315400 chr5A 91.954 87 6 1 5838 5923 227928607 227928521 3.640000e-23 121.0
47 TraesCS3B01G315400 chr5A 89.130 92 9 1 5839 5929 272948680 272948589 6.090000e-21 113.0
48 TraesCS3B01G315400 chr7D 91.765 85 6 1 5839 5922 404156004 404156088 4.710000e-22 117.0
49 TraesCS3B01G315400 chr7D 83.178 107 7 3 250 346 602397972 602398077 3.690000e-13 87.9
50 TraesCS3B01G315400 chr5D 89.247 93 8 2 5839 5929 210678851 210678759 1.690000e-21 115.0
51 TraesCS3B01G315400 chr7B 90.698 86 6 2 5839 5923 115874550 115874634 6.090000e-21 113.0
52 TraesCS3B01G315400 chr6B 81.119 143 15 6 207 346 36810822 36810689 3.660000e-18 104.0
53 TraesCS3B01G315400 chr2A 95.238 42 2 0 5928 5969 4211841 4211800 4.810000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G315400 chr3B 507268588 507276010 7422 False 4627.933333 13708 100.000000 1 7423 3 chr3B.!!$F3 7422
1 TraesCS3B01G315400 chr3A 510589350 510597599 8249 False 1379.750000 5722 94.356500 1 7420 8 chr3A.!!$F2 7419
2 TraesCS3B01G315400 chr3D 389905076 389912315 7239 False 1817.166667 4455 94.114167 1 7420 6 chr3D.!!$F3 7419
3 TraesCS3B01G315400 chr6A 74501263 74501997 734 False 1022.000000 1022 91.881000 6689 7420 1 chr6A.!!$F2 731
4 TraesCS3B01G315400 chr1A 534242234 534245696 3462 True 346.000000 586 77.100333 1566 5085 3 chr1A.!!$R2 3519
5 TraesCS3B01G315400 chr1B 592847278 592850508 3230 False 327.666667 562 78.815333 1566 4799 3 chr1B.!!$F1 3233
6 TraesCS3B01G315400 chr1D 437443872 437447373 3501 False 344.000000 558 77.647000 1566 5085 3 chr1D.!!$F1 3519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 579 0.466189 CCCATACTGCTTCGGCCAAT 60.466 55.000 2.24 0.00 40.91 3.16 F
545 580 1.202758 CCCATACTGCTTCGGCCAATA 60.203 52.381 2.24 0.00 40.91 1.90 F
1949 2056 0.191064 TCTGACCTCTTGTCCCAGGT 59.809 55.000 0.00 0.00 46.35 4.00 F
2340 2453 0.251121 TTTCACCGGCACCATCACAT 60.251 50.000 0.00 0.00 0.00 3.21 F
2997 3110 0.890542 TGGCACAGACACTGAATGGC 60.891 55.000 5.76 7.24 34.98 4.40 F
3828 4239 1.234615 TGGCAAGCACTTCTTACGGC 61.235 55.000 0.00 0.00 32.74 5.68 F
5339 6915 1.065564 TCATCGGTCATGCATGGTGAA 60.066 47.619 25.97 10.56 31.70 3.18 F
5854 7451 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1901 0.677098 AAGCGTCAGAGTCGGAGCTA 60.677 55.000 14.13 0.00 34.24 3.32 R
2016 2129 1.737008 GTCCTTGAACGTCCTCGGC 60.737 63.158 0.00 0.00 41.85 5.54 R
2978 3091 0.890542 GCCATTCAGTGTCTGTGCCA 60.891 55.000 0.00 0.00 32.61 4.92 R
3265 3604 1.462283 CAAGTTGAGACATCAGTGCCG 59.538 52.381 0.00 0.00 36.61 5.69 R
4577 6145 0.803380 GCTCCCGCATCATGTTTTGC 60.803 55.000 7.63 7.63 35.78 3.68 R
5552 7128 0.320421 CCTTCCGGCGAGTCTTTGAA 60.320 55.000 9.30 0.00 0.00 2.69 R
6167 7873 1.526887 CTGTGCTGTGTTCAAGTACCG 59.473 52.381 0.00 0.00 0.00 4.02 R
6834 8666 1.561643 AGATCGAAGCAGGTTCCAGA 58.438 50.000 6.77 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.550101 GCTGATTGCGGCCATCCTC 61.550 63.158 11.09 0.00 40.63 3.71
53 54 2.412937 GCCCCCGAATCATTTGCG 59.587 61.111 0.00 0.00 0.00 4.85
113 114 2.671351 CGAGCGTGATTACTGTCCTGTT 60.671 50.000 0.00 0.00 0.00 3.16
142 143 1.673665 CTTCGCAGCTTGAGCCCTT 60.674 57.895 0.00 0.00 43.38 3.95
217 218 9.613428 TGAATTAATAAAGTGGGTCTGTCTATG 57.387 33.333 0.00 0.00 0.00 2.23
218 219 9.614792 GAATTAATAAAGTGGGTCTGTCTATGT 57.385 33.333 0.00 0.00 0.00 2.29
219 220 9.975218 AATTAATAAAGTGGGTCTGTCTATGTT 57.025 29.630 0.00 0.00 0.00 2.71
222 223 7.973048 ATAAAGTGGGTCTGTCTATGTTAGA 57.027 36.000 0.00 0.00 0.00 2.10
223 224 6.875972 AAAGTGGGTCTGTCTATGTTAGAT 57.124 37.500 0.00 0.00 37.13 1.98
224 225 6.472686 AAGTGGGTCTGTCTATGTTAGATC 57.527 41.667 0.00 0.00 37.13 2.75
225 226 5.772004 AGTGGGTCTGTCTATGTTAGATCT 58.228 41.667 0.00 0.00 37.13 2.75
226 227 6.198639 AGTGGGTCTGTCTATGTTAGATCTT 58.801 40.000 0.00 0.00 37.13 2.40
227 228 7.355101 AGTGGGTCTGTCTATGTTAGATCTTA 58.645 38.462 0.00 0.00 37.13 2.10
228 229 7.839705 AGTGGGTCTGTCTATGTTAGATCTTAA 59.160 37.037 0.00 0.00 37.13 1.85
229 230 8.475639 GTGGGTCTGTCTATGTTAGATCTTAAA 58.524 37.037 0.00 0.00 37.13 1.52
230 231 9.213777 TGGGTCTGTCTATGTTAGATCTTAAAT 57.786 33.333 0.00 0.00 37.13 1.40
231 232 9.482627 GGGTCTGTCTATGTTAGATCTTAAATG 57.517 37.037 0.00 0.00 37.13 2.32
247 248 9.255304 GATCTTAAATGTGAGACATCTAACTCC 57.745 37.037 0.00 0.00 37.97 3.85
248 249 7.556844 TCTTAAATGTGAGACATCTAACTCCC 58.443 38.462 0.00 0.00 37.97 4.30
249 250 7.400339 TCTTAAATGTGAGACATCTAACTCCCT 59.600 37.037 0.00 0.00 37.97 4.20
250 251 5.606348 AATGTGAGACATCTAACTCCCTC 57.394 43.478 0.00 0.00 37.97 4.30
251 252 4.323569 TGTGAGACATCTAACTCCCTCT 57.676 45.455 0.00 0.00 32.84 3.69
252 253 4.274147 TGTGAGACATCTAACTCCCTCTC 58.726 47.826 0.00 0.00 32.84 3.20
253 254 4.263949 TGTGAGACATCTAACTCCCTCTCA 60.264 45.833 0.00 0.00 33.41 3.27
254 255 4.097286 GTGAGACATCTAACTCCCTCTCAC 59.903 50.000 9.24 9.24 44.30 3.51
255 256 4.263949 TGAGACATCTAACTCCCTCTCACA 60.264 45.833 0.00 0.00 31.38 3.58
256 257 4.877773 AGACATCTAACTCCCTCTCACAT 58.122 43.478 0.00 0.00 0.00 3.21
257 258 4.892934 AGACATCTAACTCCCTCTCACATC 59.107 45.833 0.00 0.00 0.00 3.06
258 259 4.877773 ACATCTAACTCCCTCTCACATCT 58.122 43.478 0.00 0.00 0.00 2.90
259 260 6.019656 ACATCTAACTCCCTCTCACATCTA 57.980 41.667 0.00 0.00 0.00 1.98
260 261 5.830991 ACATCTAACTCCCTCTCACATCTAC 59.169 44.000 0.00 0.00 0.00 2.59
261 262 4.794334 TCTAACTCCCTCTCACATCTACC 58.206 47.826 0.00 0.00 0.00 3.18
262 263 3.767309 AACTCCCTCTCACATCTACCT 57.233 47.619 0.00 0.00 0.00 3.08
263 264 3.306472 ACTCCCTCTCACATCTACCTC 57.694 52.381 0.00 0.00 0.00 3.85
264 265 2.091555 ACTCCCTCTCACATCTACCTCC 60.092 54.545 0.00 0.00 0.00 4.30
265 266 1.218196 TCCCTCTCACATCTACCTCCC 59.782 57.143 0.00 0.00 0.00 4.30
266 267 1.219213 CCCTCTCACATCTACCTCCCT 59.781 57.143 0.00 0.00 0.00 4.20
267 268 2.593026 CCTCTCACATCTACCTCCCTC 58.407 57.143 0.00 0.00 0.00 4.30
268 269 2.091610 CCTCTCACATCTACCTCCCTCA 60.092 54.545 0.00 0.00 0.00 3.86
269 270 3.437784 CCTCTCACATCTACCTCCCTCAT 60.438 52.174 0.00 0.00 0.00 2.90
270 271 3.826157 CTCTCACATCTACCTCCCTCATC 59.174 52.174 0.00 0.00 0.00 2.92
271 272 2.896685 CTCACATCTACCTCCCTCATCC 59.103 54.545 0.00 0.00 0.00 3.51
272 273 2.520120 TCACATCTACCTCCCTCATCCT 59.480 50.000 0.00 0.00 0.00 3.24
273 274 3.051803 TCACATCTACCTCCCTCATCCTT 60.052 47.826 0.00 0.00 0.00 3.36
274 275 3.070734 CACATCTACCTCCCTCATCCTTG 59.929 52.174 0.00 0.00 0.00 3.61
275 276 3.051803 ACATCTACCTCCCTCATCCTTGA 60.052 47.826 0.00 0.00 0.00 3.02
276 277 4.166539 CATCTACCTCCCTCATCCTTGAT 58.833 47.826 0.00 0.00 0.00 2.57
277 278 4.286813 TCTACCTCCCTCATCCTTGATT 57.713 45.455 0.00 0.00 0.00 2.57
278 279 4.635473 TCTACCTCCCTCATCCTTGATTT 58.365 43.478 0.00 0.00 0.00 2.17
279 280 5.039645 TCTACCTCCCTCATCCTTGATTTT 58.960 41.667 0.00 0.00 0.00 1.82
280 281 4.682021 ACCTCCCTCATCCTTGATTTTT 57.318 40.909 0.00 0.00 0.00 1.94
305 306 9.898152 TTTTTAAGTCTCCCATGAATTTGTTTT 57.102 25.926 0.00 0.00 0.00 2.43
306 307 8.885494 TTTAAGTCTCCCATGAATTTGTTTTG 57.115 30.769 0.00 0.00 0.00 2.44
307 308 6.484364 AAGTCTCCCATGAATTTGTTTTGT 57.516 33.333 0.00 0.00 0.00 2.83
308 309 6.089249 AGTCTCCCATGAATTTGTTTTGTC 57.911 37.500 0.00 0.00 0.00 3.18
309 310 5.011023 AGTCTCCCATGAATTTGTTTTGTCC 59.989 40.000 0.00 0.00 0.00 4.02
310 311 4.283212 TCTCCCATGAATTTGTTTTGTCCC 59.717 41.667 0.00 0.00 0.00 4.46
311 312 4.230455 TCCCATGAATTTGTTTTGTCCCT 58.770 39.130 0.00 0.00 0.00 4.20
312 313 5.398236 TCCCATGAATTTGTTTTGTCCCTA 58.602 37.500 0.00 0.00 0.00 3.53
313 314 5.841237 TCCCATGAATTTGTTTTGTCCCTAA 59.159 36.000 0.00 0.00 0.00 2.69
314 315 6.014669 TCCCATGAATTTGTTTTGTCCCTAAG 60.015 38.462 0.00 0.00 0.00 2.18
315 316 6.165577 CCATGAATTTGTTTTGTCCCTAAGG 58.834 40.000 0.00 0.00 0.00 2.69
316 317 5.799827 TGAATTTGTTTTGTCCCTAAGGG 57.200 39.130 0.00 0.00 46.11 3.95
317 318 5.212745 TGAATTTGTTTTGTCCCTAAGGGT 58.787 37.500 0.00 0.00 44.74 4.34
318 319 5.069781 TGAATTTGTTTTGTCCCTAAGGGTG 59.930 40.000 0.00 0.00 44.74 4.61
319 320 3.955524 TTGTTTTGTCCCTAAGGGTGA 57.044 42.857 0.00 0.00 44.74 4.02
320 321 3.502123 TGTTTTGTCCCTAAGGGTGAG 57.498 47.619 0.00 0.00 44.74 3.51
321 322 2.107552 TGTTTTGTCCCTAAGGGTGAGG 59.892 50.000 0.00 0.00 44.74 3.86
329 330 1.755380 CCTAAGGGTGAGGGAGTTACG 59.245 57.143 0.00 0.00 0.00 3.18
330 331 2.622452 CCTAAGGGTGAGGGAGTTACGA 60.622 54.545 0.00 0.00 0.00 3.43
331 332 2.249309 AAGGGTGAGGGAGTTACGAT 57.751 50.000 0.00 0.00 0.00 3.73
332 333 1.486211 AGGGTGAGGGAGTTACGATG 58.514 55.000 0.00 0.00 0.00 3.84
333 334 1.192428 GGGTGAGGGAGTTACGATGT 58.808 55.000 0.00 0.00 0.00 3.06
334 335 1.553704 GGGTGAGGGAGTTACGATGTT 59.446 52.381 0.00 0.00 0.00 2.71
335 336 2.762327 GGGTGAGGGAGTTACGATGTTA 59.238 50.000 0.00 0.00 0.00 2.41
336 337 3.181478 GGGTGAGGGAGTTACGATGTTAG 60.181 52.174 0.00 0.00 0.00 2.34
337 338 3.698040 GGTGAGGGAGTTACGATGTTAGA 59.302 47.826 0.00 0.00 0.00 2.10
338 339 4.341520 GGTGAGGGAGTTACGATGTTAGAT 59.658 45.833 0.00 0.00 0.00 1.98
339 340 5.533903 GGTGAGGGAGTTACGATGTTAGATA 59.466 44.000 0.00 0.00 0.00 1.98
340 341 6.040166 GGTGAGGGAGTTACGATGTTAGATAA 59.960 42.308 0.00 0.00 0.00 1.75
341 342 7.255871 GGTGAGGGAGTTACGATGTTAGATAAT 60.256 40.741 0.00 0.00 0.00 1.28
342 343 8.790718 GTGAGGGAGTTACGATGTTAGATAATA 58.209 37.037 0.00 0.00 0.00 0.98
343 344 9.529823 TGAGGGAGTTACGATGTTAGATAATAT 57.470 33.333 0.00 0.00 0.00 1.28
345 346 9.756571 AGGGAGTTACGATGTTAGATAATATCT 57.243 33.333 7.99 7.99 43.33 1.98
346 347 9.790389 GGGAGTTACGATGTTAGATAATATCTG 57.210 37.037 12.73 0.00 40.51 2.90
353 354 8.982685 ACGATGTTAGATAATATCTGCAACTTG 58.017 33.333 12.73 6.93 40.51 3.16
363 364 3.286751 GCAACTTGGCTGGTGCGA 61.287 61.111 5.47 0.00 40.82 5.10
398 399 0.933047 TCACTCGAAACGCACGACAG 60.933 55.000 0.00 0.00 35.88 3.51
413 414 1.335597 CGACAGGTCACGTGCTTTCTA 60.336 52.381 11.67 0.00 0.00 2.10
432 461 3.704566 TCTACGGATGTAGCTCACCATTT 59.295 43.478 0.00 0.00 46.33 2.32
433 462 3.350219 ACGGATGTAGCTCACCATTTT 57.650 42.857 0.00 0.00 0.00 1.82
491 520 2.154567 ACCGTCTTACCATCAGCCTA 57.845 50.000 0.00 0.00 0.00 3.93
495 524 3.553096 CCGTCTTACCATCAGCCTATGTC 60.553 52.174 0.00 0.00 0.00 3.06
532 567 1.673808 GAACGGAGGCGACCCATACT 61.674 60.000 0.00 0.00 0.00 2.12
544 579 0.466189 CCCATACTGCTTCGGCCAAT 60.466 55.000 2.24 0.00 40.91 3.16
545 580 1.202758 CCCATACTGCTTCGGCCAATA 60.203 52.381 2.24 0.00 40.91 1.90
560 595 1.571919 CAATAGTGCCTCGGTACTGC 58.428 55.000 15.70 0.00 41.03 4.40
827 874 2.125147 TGAAATCCCGCAGCCTCG 60.125 61.111 0.00 0.00 0.00 4.63
831 878 2.185310 AAATCCCGCAGCCTCGAACT 62.185 55.000 0.00 0.00 0.00 3.01
943 1011 3.314331 ACACAGGGGAGTCAGCGG 61.314 66.667 0.00 0.00 0.00 5.52
1086 1160 2.046314 GTACACCTGCGCCACCAT 60.046 61.111 4.18 0.00 0.00 3.55
1514 1594 2.279073 CTCCCAGGAGGCCGTCTA 59.721 66.667 5.74 0.00 38.51 2.59
1608 1688 1.676968 CATCCCGTGGAACTGGTCA 59.323 57.895 0.00 0.00 42.47 4.02
1797 1901 2.204059 AGGCTGGCTTCCTCCACT 60.204 61.111 0.00 0.00 31.74 4.00
1859 1966 2.741985 CTCCGGTGCACGCAATGA 60.742 61.111 11.45 1.70 42.52 2.57
1949 2056 0.191064 TCTGACCTCTTGTCCCAGGT 59.809 55.000 0.00 0.00 46.35 4.00
2016 2129 1.891060 GCCTGACACAGAAGTTCGCG 61.891 60.000 0.00 0.00 32.44 5.87
2269 2382 1.614711 GTGATGGAGATTGGGCCCA 59.385 57.895 24.45 24.45 0.00 5.36
2340 2453 0.251121 TTTCACCGGCACCATCACAT 60.251 50.000 0.00 0.00 0.00 3.21
2415 2528 5.181009 AGCATCATCTCGAAAGTCATTGAA 58.819 37.500 0.00 0.00 0.00 2.69
2526 2639 2.224867 CCCCAAGTTGAAGGAGTGTGAT 60.225 50.000 3.87 0.00 0.00 3.06
2735 2848 6.239120 GCAAGCATCATTATTACCATCAACCT 60.239 38.462 0.00 0.00 0.00 3.50
2782 2895 3.251729 GCAAGCATGATCGTACCATCAAT 59.748 43.478 7.27 0.00 36.36 2.57
2919 3032 9.831737 CTGTAATTTGTCAAGAAGTGAATTAGG 57.168 33.333 0.00 0.00 38.23 2.69
2973 3086 6.298361 TGATCGAAATATCACATGGTTGGAT 58.702 36.000 0.00 0.00 30.92 3.41
2978 3091 9.130661 TCGAAATATCACATGGTTGGATTAATT 57.869 29.630 0.00 0.00 0.00 1.40
2986 3099 3.772387 TGGTTGGATTAATTGGCACAGA 58.228 40.909 0.00 0.00 42.39 3.41
2997 3110 0.890542 TGGCACAGACACTGAATGGC 60.891 55.000 5.76 7.24 34.98 4.40
3058 3171 6.164176 AGTTGGAATACAGTTAAGGAACTCG 58.836 40.000 0.00 0.00 44.39 4.18
3060 3173 3.869832 GGAATACAGTTAAGGAACTCGCC 59.130 47.826 0.00 0.00 44.39 5.54
3095 3208 6.460676 CCCTGTCAGAATTTTAATGCTCCATC 60.461 42.308 0.00 0.00 0.00 3.51
3115 3441 5.406175 CCATCGTTGCAATTCTTGTTTTGAT 59.594 36.000 0.59 0.00 0.00 2.57
3265 3604 2.810852 CAGAAACTGGAGTTGAGCCTTC 59.189 50.000 0.00 0.00 38.44 3.46
3437 3782 9.177608 CAATTTGACACTATTTTCCTATCCTGA 57.822 33.333 0.00 0.00 0.00 3.86
3441 3786 8.008513 TGACACTATTTTCCTATCCTGACTAC 57.991 38.462 0.00 0.00 0.00 2.73
3523 3868 7.462731 CGTGTTGCCTTACGGTTAATATTTTA 58.537 34.615 0.00 0.00 36.71 1.52
3525 3870 7.426169 GTGTTGCCTTACGGTTAATATTTTACG 59.574 37.037 0.00 0.00 0.00 3.18
3548 3893 5.389516 CGACCACTTAATGTAGTGTTCTTGC 60.390 44.000 0.00 0.00 43.17 4.01
3828 4239 1.234615 TGGCAAGCACTTCTTACGGC 61.235 55.000 0.00 0.00 32.74 5.68
3870 4284 5.360714 ACATACATCAAATCACCATGGTTCC 59.639 40.000 16.84 0.00 0.00 3.62
4188 4950 5.686753 ACTGGTTGTCCACTTTGTATACAA 58.313 37.500 14.35 14.35 39.03 2.41
4189 4951 5.763204 ACTGGTTGTCCACTTTGTATACAAG 59.237 40.000 17.36 13.87 39.03 3.16
4198 5766 9.821662 GTCCACTTTGTATACAAGTGAATTAAC 57.178 33.333 29.74 20.78 37.26 2.01
4221 5789 5.418840 ACCAAATGAACTATGATGGGTCAAC 59.581 40.000 0.00 0.00 38.01 3.18
4254 5822 1.542547 CCGTGCCTCCAACTTGTAGTT 60.543 52.381 0.00 0.00 39.39 2.24
4258 5826 4.324267 GTGCCTCCAACTTGTAGTTATGT 58.676 43.478 0.00 0.00 36.03 2.29
4261 5829 6.428771 GTGCCTCCAACTTGTAGTTATGTTAA 59.571 38.462 0.00 0.00 36.03 2.01
4318 5886 4.513442 CCTCCGATCCAAAATAAGTGTCA 58.487 43.478 0.00 0.00 0.00 3.58
4338 5906 5.758296 TGTCACAGCTTTGAACTAAGGTTAG 59.242 40.000 3.65 0.00 35.58 2.34
4371 5939 6.699575 AGTTCAAAGCTGTGACACTTATTT 57.300 33.333 5.94 2.34 0.00 1.40
4372 5940 6.498304 AGTTCAAAGCTGTGACACTTATTTG 58.502 36.000 5.94 16.90 0.00 2.32
4373 5941 6.095440 AGTTCAAAGCTGTGACACTTATTTGT 59.905 34.615 5.94 7.33 0.00 2.83
4374 5942 7.282224 AGTTCAAAGCTGTGACACTTATTTGTA 59.718 33.333 5.94 13.11 0.00 2.41
4375 5943 7.189693 TCAAAGCTGTGACACTTATTTGTAG 57.810 36.000 19.78 5.73 0.00 2.74
4376 5944 6.989759 TCAAAGCTGTGACACTTATTTGTAGA 59.010 34.615 19.78 7.33 0.00 2.59
4377 5945 6.787085 AAGCTGTGACACTTATTTGTAGAC 57.213 37.500 7.20 0.00 0.00 2.59
4412 5980 6.560253 ATTGTTAGCTTGTTGTTCTACCAG 57.440 37.500 0.00 0.00 0.00 4.00
4421 5989 6.756542 GCTTGTTGTTCTACCAGATTGTTTTT 59.243 34.615 0.00 0.00 0.00 1.94
4623 6191 5.519566 GTCATGATGAGAATGACTCTGACAC 59.480 44.000 0.00 0.00 46.81 3.67
4747 6318 3.340814 ACTAAGACCAAGTGGATGCAG 57.659 47.619 3.83 0.00 38.94 4.41
4812 6383 1.300971 CCTTCTCACATGCACCGGTG 61.301 60.000 30.66 30.66 36.36 4.94
4836 6407 5.705441 GTCCTGAAACAGATAATGGTGTTCA 59.295 40.000 0.00 0.00 35.83 3.18
4998 6569 4.040952 ACTTGCTCATGTTCTCAGTAAGGT 59.959 41.667 11.89 0.00 0.00 3.50
5089 6660 9.530129 GAACAAGAGAATTTGTAAGTAACATCG 57.470 33.333 0.00 0.00 40.24 3.84
5100 6671 6.567050 TGTAAGTAACATCGTCTTACATCCC 58.433 40.000 11.31 0.00 44.36 3.85
5117 6688 2.500229 TCCCGTTCAAACAGCCTAAAG 58.500 47.619 0.00 0.00 0.00 1.85
5127 6698 6.875076 TCAAACAGCCTAAAGTATAGGAGTC 58.125 40.000 5.71 0.00 36.85 3.36
5276 6852 9.672673 TCTTCCCTAAAGATACATTCTTCAAAG 57.327 33.333 0.00 0.00 44.09 2.77
5277 6853 9.672673 CTTCCCTAAAGATACATTCTTCAAAGA 57.327 33.333 0.00 0.00 44.09 2.52
5321 6897 8.198778 TCGCACACCAATAGTTAGTATTAATCA 58.801 33.333 0.00 0.00 29.54 2.57
5339 6915 1.065564 TCATCGGTCATGCATGGTGAA 60.066 47.619 25.97 10.56 31.70 3.18
5352 6928 5.008980 TGCATGGTGAACAATCAATACTCA 58.991 37.500 0.00 0.00 37.30 3.41
5540 7116 7.624360 AGAGCCTAGATCGAGAAATATACTG 57.376 40.000 4.15 0.00 0.00 2.74
5552 7128 7.036220 CGAGAAATATACTGTGTTGGAGAACT 58.964 38.462 0.00 0.00 32.79 3.01
5601 7177 7.800155 TTCATGTCTGAGTTATGTTGAAACA 57.200 32.000 0.00 0.00 36.62 2.83
5613 7189 2.942376 TGTTGAAACAGTGTGCCACTAG 59.058 45.455 0.00 0.00 43.43 2.57
5632 7208 2.269940 AGAATAAGTGCCAGTGGGTCT 58.730 47.619 12.15 0.00 36.17 3.85
5637 7213 3.306472 AAGTGCCAGTGGGTCTTTTTA 57.694 42.857 12.15 0.00 36.17 1.52
5777 7374 6.884295 TGTATAGCTTGAAACATTTAGGCTGT 59.116 34.615 0.00 0.00 0.00 4.40
5799 7396 2.442413 CTGGGCCCCTTTTGAGCT 59.558 61.111 22.27 0.00 0.00 4.09
5831 7428 1.270412 GCTGGATCTGATGCTCTCCTG 60.270 57.143 10.56 4.10 0.00 3.86
5854 7451 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
5866 7463 5.456186 CCCTCCGTCCCAAAATATAAGATGT 60.456 44.000 0.00 0.00 0.00 3.06
5867 7464 6.062095 CCTCCGTCCCAAAATATAAGATGTT 58.938 40.000 0.00 0.00 0.00 2.71
5868 7465 6.546034 CCTCCGTCCCAAAATATAAGATGTTT 59.454 38.462 0.00 0.00 0.00 2.83
5869 7466 7.068226 CCTCCGTCCCAAAATATAAGATGTTTT 59.932 37.037 0.00 0.00 34.50 2.43
5870 7467 7.767261 TCCGTCCCAAAATATAAGATGTTTTG 58.233 34.615 12.06 12.06 45.29 2.44
5871 7468 6.475402 CCGTCCCAAAATATAAGATGTTTTGC 59.525 38.462 13.07 3.26 44.74 3.68
5872 7469 7.032580 CGTCCCAAAATATAAGATGTTTTGCA 58.967 34.615 13.07 0.00 44.74 4.08
5873 7470 7.543868 CGTCCCAAAATATAAGATGTTTTGCAA 59.456 33.333 13.07 0.00 44.74 4.08
5874 7471 9.213799 GTCCCAAAATATAAGATGTTTTGCAAA 57.786 29.630 8.05 8.05 44.74 3.68
5875 7472 9.213799 TCCCAAAATATAAGATGTTTTGCAAAC 57.786 29.630 12.39 8.01 44.74 2.93
5876 7473 9.218440 CCCAAAATATAAGATGTTTTGCAAACT 57.782 29.630 12.39 2.49 44.74 2.66
5887 7484 9.793252 AGATGTTTTGCAAACTATATTAGCTTG 57.207 29.630 12.39 0.00 35.52 4.01
5957 7554 4.220382 TCCGTCCCGAATTAGTTGTCTTAA 59.780 41.667 0.00 0.00 0.00 1.85
5994 7699 9.652114 AGGCCTTTTTCTCAAGATGAATATAAT 57.348 29.630 0.00 0.00 0.00 1.28
6098 7803 8.956426 TGTTAGGTTGATTTTTCCTGATACATC 58.044 33.333 0.00 0.00 33.34 3.06
6099 7804 6.683974 AGGTTGATTTTTCCTGATACATCG 57.316 37.500 0.00 0.00 0.00 3.84
6167 7873 9.751542 AGTGAATTAGCAACTGTATAGTGATAC 57.248 33.333 0.00 0.00 37.19 2.24
6210 7916 1.163420 TGGTGTTTGCGCACTGGTAG 61.163 55.000 11.12 0.00 39.21 3.18
6339 8046 1.068472 CACAGCTCTCGTCGTTTAGGT 60.068 52.381 0.00 0.00 0.00 3.08
6374 8081 3.570550 GTGGAAGGTCACGAGCTATATCT 59.429 47.826 0.00 0.00 38.35 1.98
6423 8130 7.393216 CATTTCCACAAAATCCCCAAGATAAA 58.607 34.615 0.00 0.00 35.32 1.40
6424 8131 7.380423 TTTCCACAAAATCCCCAAGATAAAA 57.620 32.000 0.00 0.00 33.66 1.52
6425 8132 6.603940 TCCACAAAATCCCCAAGATAAAAG 57.396 37.500 0.00 0.00 33.66 2.27
6426 8133 6.318913 TCCACAAAATCCCCAAGATAAAAGA 58.681 36.000 0.00 0.00 33.66 2.52
6427 8134 6.784969 TCCACAAAATCCCCAAGATAAAAGAA 59.215 34.615 0.00 0.00 33.66 2.52
6428 8135 6.873605 CCACAAAATCCCCAAGATAAAAGAAC 59.126 38.462 0.00 0.00 33.66 3.01
6429 8136 7.441017 CACAAAATCCCCAAGATAAAAGAACA 58.559 34.615 0.00 0.00 33.66 3.18
6430 8137 7.384932 CACAAAATCCCCAAGATAAAAGAACAC 59.615 37.037 0.00 0.00 33.66 3.32
6431 8138 7.290014 ACAAAATCCCCAAGATAAAAGAACACT 59.710 33.333 0.00 0.00 33.66 3.55
6432 8139 8.802267 CAAAATCCCCAAGATAAAAGAACACTA 58.198 33.333 0.00 0.00 33.66 2.74
6433 8140 8.581253 AAATCCCCAAGATAAAAGAACACTAG 57.419 34.615 0.00 0.00 33.66 2.57
6434 8141 6.945636 TCCCCAAGATAAAAGAACACTAGA 57.054 37.500 0.00 0.00 0.00 2.43
6435 8142 7.324388 TCCCCAAGATAAAAGAACACTAGAA 57.676 36.000 0.00 0.00 0.00 2.10
6436 8143 7.394816 TCCCCAAGATAAAAGAACACTAGAAG 58.605 38.462 0.00 0.00 0.00 2.85
6437 8144 7.017254 TCCCCAAGATAAAAGAACACTAGAAGT 59.983 37.037 0.00 0.00 0.00 3.01
6449 8156 6.243216 AACACTAGAAGTGGTAGTTTTCCA 57.757 37.500 11.47 0.00 45.86 3.53
6450 8157 6.053650 AACACTAGAAGTGGTAGTTTTCCAC 58.946 40.000 11.47 6.96 45.86 4.02
6451 8158 6.352394 AACACTAGAAGTGGTAGTTTTCCACA 60.352 38.462 15.79 0.00 45.86 4.17
6452 8159 7.798714 AACACTAGAAGTGGTAGTTTTCCACAA 60.799 37.037 15.79 0.34 45.86 3.33
6459 8166 3.898741 TGGTAGTTTTCCACAAAATCCCC 59.101 43.478 0.00 0.00 33.98 4.81
6460 8167 3.898741 GGTAGTTTTCCACAAAATCCCCA 59.101 43.478 0.00 0.00 33.98 4.96
6461 8168 4.345547 GGTAGTTTTCCACAAAATCCCCAA 59.654 41.667 0.00 0.00 33.98 4.12
6462 8169 4.687901 AGTTTTCCACAAAATCCCCAAG 57.312 40.909 0.00 0.00 33.98 3.61
6463 8170 4.294347 AGTTTTCCACAAAATCCCCAAGA 58.706 39.130 0.00 0.00 33.98 3.02
6464 8171 4.907269 AGTTTTCCACAAAATCCCCAAGAT 59.093 37.500 0.00 0.00 33.98 2.40
6465 8172 6.081356 AGTTTTCCACAAAATCCCCAAGATA 58.919 36.000 0.00 0.00 33.98 1.98
6466 8173 6.556874 AGTTTTCCACAAAATCCCCAAGATAA 59.443 34.615 0.00 0.00 33.98 1.75
6503 8210 7.500720 AGTGGTAGTTTTACAAGCGTTTAAT 57.499 32.000 0.00 0.00 0.00 1.40
6645 8352 8.166706 GCAAATTCTTTTCTGTCAAATATGCTG 58.833 33.333 0.00 0.00 0.00 4.41
6669 8376 8.121167 TGTGTAATTCTTTTTAAAAGCCAACG 57.879 30.769 12.17 0.00 0.00 4.10
6790 8620 2.489329 GTGATTGTGAACCATGTCAGGG 59.511 50.000 0.92 0.92 0.00 4.45
6803 8633 9.793259 GAACCATGTCAGGGAAAGATAATATTA 57.207 33.333 11.25 0.00 0.00 0.98
6809 8639 8.553153 TGTCAGGGAAAGATAATATTAACCACA 58.447 33.333 0.00 0.00 0.00 4.17
6829 8661 4.990426 CACAAAAAGGGGAAACAATGCTAG 59.010 41.667 0.00 0.00 0.00 3.42
6832 8664 5.977489 AAAAGGGGAAACAATGCTAGTAC 57.023 39.130 0.00 0.00 0.00 2.73
6833 8665 4.929146 AAGGGGAAACAATGCTAGTACT 57.071 40.909 0.00 0.00 0.00 2.73
6834 8666 4.929146 AGGGGAAACAATGCTAGTACTT 57.071 40.909 0.00 0.00 0.00 2.24
6867 8702 7.854916 CCTGCTTCGATCTTCATTTTATTCTTC 59.145 37.037 0.00 0.00 0.00 2.87
6878 8713 8.477419 TTCATTTTATTCTTCCTTGGACTGTT 57.523 30.769 0.00 0.00 0.00 3.16
6880 8715 6.894339 TTTTATTCTTCCTTGGACTGTTCC 57.106 37.500 0.00 0.00 43.19 3.62
6887 8722 5.548056 TCTTCCTTGGACTGTTCCTAGAAAT 59.452 40.000 3.98 0.00 45.03 2.17
6903 8738 6.024049 CCTAGAAATTCGCACATTGAAGTTC 58.976 40.000 7.57 7.57 45.66 3.01
7019 8855 4.699637 AGGTCACTGAACAAACGATACAA 58.300 39.130 0.00 0.00 0.00 2.41
7032 8868 8.776680 ACAAACGATACAAATTACAACACTTC 57.223 30.769 0.00 0.00 0.00 3.01
7096 8932 6.485313 ACAAAACTGTAATTTCTCCATCGACA 59.515 34.615 0.00 0.00 0.00 4.35
7160 8996 1.416401 TCAAGAGACCACCACCAGAAC 59.584 52.381 0.00 0.00 0.00 3.01
7165 9001 2.337879 GACCACCACCAGAACTGCCA 62.338 60.000 0.00 0.00 0.00 4.92
7224 9060 1.343884 CCCCTTCAGATCCTCCTCTGT 60.344 57.143 1.41 0.00 42.68 3.41
7275 9112 4.022676 ACGGCCGATCTTTTGTTAAAATGT 60.023 37.500 35.90 0.00 0.00 2.71
7280 9119 6.570764 GCCGATCTTTTGTTAAAATGTACCCA 60.571 38.462 0.00 0.00 0.00 4.51
7284 9123 4.913335 TTTGTTAAAATGTACCCACGCA 57.087 36.364 0.00 0.00 0.00 5.24
7333 9172 3.181455 TGCAGCAAGAACTAACCTGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
7384 9224 4.753107 GTGGTCGACAAATAGAAGTTCCAA 59.247 41.667 18.91 0.00 0.00 3.53
7420 9260 0.250467 ACATGAAGGCAACACGAGCT 60.250 50.000 0.00 0.00 41.41 4.09
7421 9261 0.167470 CATGAAGGCAACACGAGCTG 59.833 55.000 0.00 0.00 41.41 4.24
7422 9262 0.957395 ATGAAGGCAACACGAGCTGG 60.957 55.000 0.00 0.00 41.41 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.080298 ATCGGGTGAAACGTCGGTC 60.080 57.895 0.00 0.00 38.12 4.79
205 206 9.482627 CATTTAAGATCTAACATAGACAGACCC 57.517 37.037 0.00 0.00 37.69 4.46
221 222 9.255304 GGAGTTAGATGTCTCACATTTAAGATC 57.745 37.037 1.02 0.00 39.27 2.75
222 223 8.207545 GGGAGTTAGATGTCTCACATTTAAGAT 58.792 37.037 1.02 0.00 39.27 2.40
223 224 7.400339 AGGGAGTTAGATGTCTCACATTTAAGA 59.600 37.037 1.02 0.00 39.27 2.10
224 225 7.560368 AGGGAGTTAGATGTCTCACATTTAAG 58.440 38.462 1.02 0.00 39.27 1.85
225 226 7.400339 AGAGGGAGTTAGATGTCTCACATTTAA 59.600 37.037 0.00 0.00 39.27 1.52
226 227 6.897966 AGAGGGAGTTAGATGTCTCACATTTA 59.102 38.462 0.00 0.00 39.27 1.40
227 228 5.723887 AGAGGGAGTTAGATGTCTCACATTT 59.276 40.000 0.00 0.00 39.27 2.32
228 229 5.276440 AGAGGGAGTTAGATGTCTCACATT 58.724 41.667 0.00 0.00 39.27 2.71
229 230 4.877773 AGAGGGAGTTAGATGTCTCACAT 58.122 43.478 0.00 0.00 42.43 3.21
230 231 4.263949 TGAGAGGGAGTTAGATGTCTCACA 60.264 45.833 0.00 0.00 36.40 3.58
231 232 4.274147 TGAGAGGGAGTTAGATGTCTCAC 58.726 47.826 0.00 0.00 36.40 3.51
232 233 4.263949 TGTGAGAGGGAGTTAGATGTCTCA 60.264 45.833 0.00 0.00 38.43 3.27
233 234 4.274147 TGTGAGAGGGAGTTAGATGTCTC 58.726 47.826 0.00 0.00 0.00 3.36
234 235 4.323569 TGTGAGAGGGAGTTAGATGTCT 57.676 45.455 0.00 0.00 0.00 3.41
235 236 4.892934 AGATGTGAGAGGGAGTTAGATGTC 59.107 45.833 0.00 0.00 0.00 3.06
236 237 4.877773 AGATGTGAGAGGGAGTTAGATGT 58.122 43.478 0.00 0.00 0.00 3.06
237 238 5.242838 GGTAGATGTGAGAGGGAGTTAGATG 59.757 48.000 0.00 0.00 0.00 2.90
238 239 5.135362 AGGTAGATGTGAGAGGGAGTTAGAT 59.865 44.000 0.00 0.00 0.00 1.98
239 240 4.479056 AGGTAGATGTGAGAGGGAGTTAGA 59.521 45.833 0.00 0.00 0.00 2.10
240 241 4.798882 AGGTAGATGTGAGAGGGAGTTAG 58.201 47.826 0.00 0.00 0.00 2.34
241 242 4.386536 GGAGGTAGATGTGAGAGGGAGTTA 60.387 50.000 0.00 0.00 0.00 2.24
242 243 3.628769 GGAGGTAGATGTGAGAGGGAGTT 60.629 52.174 0.00 0.00 0.00 3.01
243 244 2.091555 GGAGGTAGATGTGAGAGGGAGT 60.092 54.545 0.00 0.00 0.00 3.85
244 245 2.593026 GGAGGTAGATGTGAGAGGGAG 58.407 57.143 0.00 0.00 0.00 4.30
245 246 1.218196 GGGAGGTAGATGTGAGAGGGA 59.782 57.143 0.00 0.00 0.00 4.20
246 247 1.219213 AGGGAGGTAGATGTGAGAGGG 59.781 57.143 0.00 0.00 0.00 4.30
247 248 2.091610 TGAGGGAGGTAGATGTGAGAGG 60.092 54.545 0.00 0.00 0.00 3.69
248 249 3.304911 TGAGGGAGGTAGATGTGAGAG 57.695 52.381 0.00 0.00 0.00 3.20
249 250 3.437198 GGATGAGGGAGGTAGATGTGAGA 60.437 52.174 0.00 0.00 0.00 3.27
250 251 2.896685 GGATGAGGGAGGTAGATGTGAG 59.103 54.545 0.00 0.00 0.00 3.51
251 252 2.520120 AGGATGAGGGAGGTAGATGTGA 59.480 50.000 0.00 0.00 0.00 3.58
252 253 2.969628 AGGATGAGGGAGGTAGATGTG 58.030 52.381 0.00 0.00 0.00 3.21
253 254 3.051803 TCAAGGATGAGGGAGGTAGATGT 60.052 47.826 0.00 0.00 0.00 3.06
254 255 3.581101 TCAAGGATGAGGGAGGTAGATG 58.419 50.000 0.00 0.00 0.00 2.90
255 256 4.500389 ATCAAGGATGAGGGAGGTAGAT 57.500 45.455 0.00 0.00 39.39 1.98
256 257 4.286813 AATCAAGGATGAGGGAGGTAGA 57.713 45.455 0.00 0.00 39.39 2.59
257 258 5.379706 AAAATCAAGGATGAGGGAGGTAG 57.620 43.478 0.00 0.00 39.39 3.18
258 259 5.796502 AAAAATCAAGGATGAGGGAGGTA 57.203 39.130 0.00 0.00 39.39 3.08
259 260 4.682021 AAAAATCAAGGATGAGGGAGGT 57.318 40.909 0.00 0.00 39.39 3.85
279 280 9.898152 AAAACAAATTCATGGGAGACTTAAAAA 57.102 25.926 0.00 0.00 0.00 1.94
280 281 9.323985 CAAAACAAATTCATGGGAGACTTAAAA 57.676 29.630 0.00 0.00 0.00 1.52
281 282 8.482128 ACAAAACAAATTCATGGGAGACTTAAA 58.518 29.630 0.00 0.00 0.00 1.52
282 283 8.017418 ACAAAACAAATTCATGGGAGACTTAA 57.983 30.769 0.00 0.00 0.00 1.85
283 284 7.255801 GGACAAAACAAATTCATGGGAGACTTA 60.256 37.037 0.00 0.00 0.00 2.24
284 285 6.462909 GGACAAAACAAATTCATGGGAGACTT 60.463 38.462 0.00 0.00 0.00 3.01
285 286 5.011023 GGACAAAACAAATTCATGGGAGACT 59.989 40.000 0.00 0.00 0.00 3.24
286 287 5.230182 GGACAAAACAAATTCATGGGAGAC 58.770 41.667 0.00 0.00 0.00 3.36
287 288 4.283212 GGGACAAAACAAATTCATGGGAGA 59.717 41.667 0.00 0.00 0.00 3.71
288 289 4.284234 AGGGACAAAACAAATTCATGGGAG 59.716 41.667 0.00 0.00 0.00 4.30
289 290 4.230455 AGGGACAAAACAAATTCATGGGA 58.770 39.130 0.00 0.00 0.00 4.37
290 291 4.622260 AGGGACAAAACAAATTCATGGG 57.378 40.909 0.00 0.00 0.00 4.00
291 292 6.165577 CCTTAGGGACAAAACAAATTCATGG 58.834 40.000 0.00 0.00 33.58 3.66
309 310 1.755380 CGTAACTCCCTCACCCTTAGG 59.245 57.143 0.00 0.00 40.04 2.69
310 311 2.731572 TCGTAACTCCCTCACCCTTAG 58.268 52.381 0.00 0.00 0.00 2.18
311 312 2.905415 TCGTAACTCCCTCACCCTTA 57.095 50.000 0.00 0.00 0.00 2.69
312 313 1.831736 CATCGTAACTCCCTCACCCTT 59.168 52.381 0.00 0.00 0.00 3.95
313 314 1.273098 ACATCGTAACTCCCTCACCCT 60.273 52.381 0.00 0.00 0.00 4.34
314 315 1.192428 ACATCGTAACTCCCTCACCC 58.808 55.000 0.00 0.00 0.00 4.61
315 316 3.698040 TCTAACATCGTAACTCCCTCACC 59.302 47.826 0.00 0.00 0.00 4.02
316 317 4.978083 TCTAACATCGTAACTCCCTCAC 57.022 45.455 0.00 0.00 0.00 3.51
317 318 7.834881 ATTATCTAACATCGTAACTCCCTCA 57.165 36.000 0.00 0.00 0.00 3.86
319 320 9.756571 AGATATTATCTAACATCGTAACTCCCT 57.243 33.333 4.32 0.00 38.00 4.20
320 321 9.790389 CAGATATTATCTAACATCGTAACTCCC 57.210 37.037 5.88 0.00 37.58 4.30
321 322 9.291664 GCAGATATTATCTAACATCGTAACTCC 57.708 37.037 5.88 0.00 37.58 3.85
322 323 9.841880 TGCAGATATTATCTAACATCGTAACTC 57.158 33.333 5.88 0.00 37.58 3.01
327 328 8.982685 CAAGTTGCAGATATTATCTAACATCGT 58.017 33.333 16.32 9.20 37.58 3.73
328 329 8.438513 CCAAGTTGCAGATATTATCTAACATCG 58.561 37.037 16.32 7.98 37.58 3.84
329 330 8.233190 GCCAAGTTGCAGATATTATCTAACATC 58.767 37.037 16.32 12.03 37.58 3.06
330 331 7.941238 AGCCAAGTTGCAGATATTATCTAACAT 59.059 33.333 16.32 6.65 37.58 2.71
331 332 7.227314 CAGCCAAGTTGCAGATATTATCTAACA 59.773 37.037 16.32 11.13 37.58 2.41
332 333 7.308229 CCAGCCAAGTTGCAGATATTATCTAAC 60.308 40.741 5.88 8.19 37.58 2.34
333 334 6.712095 CCAGCCAAGTTGCAGATATTATCTAA 59.288 38.462 5.88 0.00 37.58 2.10
334 335 6.183361 ACCAGCCAAGTTGCAGATATTATCTA 60.183 38.462 5.88 0.00 37.58 1.98
335 336 5.068636 CCAGCCAAGTTGCAGATATTATCT 58.931 41.667 0.08 0.08 41.15 1.98
336 337 4.823989 ACCAGCCAAGTTGCAGATATTATC 59.176 41.667 0.00 0.00 0.00 1.75
337 338 4.581824 CACCAGCCAAGTTGCAGATATTAT 59.418 41.667 0.00 0.00 0.00 1.28
338 339 3.947196 CACCAGCCAAGTTGCAGATATTA 59.053 43.478 0.00 0.00 0.00 0.98
339 340 2.756760 CACCAGCCAAGTTGCAGATATT 59.243 45.455 0.00 0.00 0.00 1.28
340 341 2.372264 CACCAGCCAAGTTGCAGATAT 58.628 47.619 0.00 0.00 0.00 1.63
341 342 1.825090 CACCAGCCAAGTTGCAGATA 58.175 50.000 0.00 0.00 0.00 1.98
342 343 1.530013 GCACCAGCCAAGTTGCAGAT 61.530 55.000 0.00 0.00 33.58 2.90
343 344 2.195567 GCACCAGCCAAGTTGCAGA 61.196 57.895 0.00 0.00 33.58 4.26
344 345 2.337532 GCACCAGCCAAGTTGCAG 59.662 61.111 0.00 0.00 33.58 4.41
345 346 3.594775 CGCACCAGCCAAGTTGCA 61.595 61.111 0.00 0.00 37.52 4.08
346 347 2.146073 ATTCGCACCAGCCAAGTTGC 62.146 55.000 0.00 0.00 37.52 4.17
353 354 3.818787 CAGCCATTCGCACCAGCC 61.819 66.667 0.00 0.00 41.38 4.85
363 364 1.202855 AGTGAACACAGAGCAGCCATT 60.203 47.619 7.68 0.00 0.00 3.16
398 399 0.038892 TCCGTAGAAAGCACGTGACC 60.039 55.000 22.23 1.65 37.71 4.02
413 414 3.270877 GAAAATGGTGAGCTACATCCGT 58.729 45.455 0.00 0.00 0.00 4.69
432 461 1.448985 GCTCTACCATTTGGCGTGAA 58.551 50.000 0.00 0.00 39.32 3.18
433 462 0.739462 CGCTCTACCATTTGGCGTGA 60.739 55.000 0.00 0.00 40.78 4.35
481 510 1.945394 GTGCTTGACATAGGCTGATGG 59.055 52.381 0.00 0.00 31.63 3.51
491 520 3.049674 CACGGCCGTGCTTGACAT 61.050 61.111 42.21 9.65 39.39 3.06
495 524 4.025401 GTTCCACGGCCGTGCTTG 62.025 66.667 45.23 33.48 44.16 4.01
532 567 1.748879 GGCACTATTGGCCGAAGCA 60.749 57.895 0.00 0.00 42.39 3.91
544 579 3.612251 GGCAGTACCGAGGCACTA 58.388 61.111 0.00 0.00 41.55 2.74
564 599 3.695606 TCTCTGCGGGACTGCACC 61.696 66.667 0.86 0.00 40.62 5.01
630 670 4.129737 TTTCTCGGCTCGGCTCGG 62.130 66.667 0.00 0.00 0.00 4.63
631 671 2.580867 CTTTCTCGGCTCGGCTCG 60.581 66.667 0.00 0.00 0.00 5.03
632 672 2.202810 CCTTTCTCGGCTCGGCTC 60.203 66.667 0.00 0.00 0.00 4.70
633 673 4.459089 GCCTTTCTCGGCTCGGCT 62.459 66.667 0.00 0.00 46.63 5.52
789 836 3.093172 GAAGGAGAGGGCAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
794 841 3.003173 CACGGGAAGGAGAGGGCA 61.003 66.667 0.00 0.00 0.00 5.36
827 874 3.424962 CGGAGATTTCGCCTTTTCAGTTC 60.425 47.826 0.00 0.00 33.34 3.01
831 878 2.346803 CTCGGAGATTTCGCCTTTTCA 58.653 47.619 0.00 0.00 33.89 2.69
1245 1325 4.120331 GTGTACGGGTCGGGGTCG 62.120 72.222 0.00 0.00 37.82 4.79
1514 1594 1.270678 GGAAGAGGTACTTGTTGCCGT 60.271 52.381 0.00 0.00 41.55 5.68
1797 1901 0.677098 AAGCGTCAGAGTCGGAGCTA 60.677 55.000 14.13 0.00 34.24 3.32
1859 1966 2.048023 CCAGTCATGCCGCCAATGT 61.048 57.895 0.00 0.00 0.00 2.71
1878 1985 2.443016 AGCTCCCCGGAGTAGCTG 60.443 66.667 20.12 0.00 44.67 4.24
2016 2129 1.737008 GTCCTTGAACGTCCTCGGC 60.737 63.158 0.00 0.00 41.85 5.54
2269 2382 3.405831 CATCCATGTCGATGTTGCCTAT 58.594 45.455 4.32 0.00 35.83 2.57
2526 2639 2.741517 CCACTGCAATGTGTTGACGATA 59.258 45.455 5.48 0.00 37.53 2.92
2919 3032 6.925718 TGTCATCTGAAGTTGCTATACTATGC 59.074 38.462 0.00 0.00 0.00 3.14
2973 3086 4.218200 CCATTCAGTGTCTGTGCCAATTAA 59.782 41.667 0.00 0.00 32.61 1.40
2978 3091 0.890542 GCCATTCAGTGTCTGTGCCA 60.891 55.000 0.00 0.00 32.61 4.92
2986 3099 1.145738 ACCAAAGAGGCCATTCAGTGT 59.854 47.619 5.01 0.00 43.14 3.55
3047 3160 3.841643 CTTAAGTCGGCGAGTTCCTTAA 58.158 45.455 31.07 25.40 0.00 1.85
3058 3171 1.449778 GACAGGGGCTTAAGTCGGC 60.450 63.158 4.02 0.00 0.00 5.54
3060 3173 0.895530 TCTGACAGGGGCTTAAGTCG 59.104 55.000 4.02 0.00 33.83 4.18
3095 3208 8.274939 ATTGTTATCAAAACAAGAATTGCAACG 58.725 29.630 0.00 0.00 42.82 4.10
3265 3604 1.462283 CAAGTTGAGACATCAGTGCCG 59.538 52.381 0.00 0.00 36.61 5.69
3437 3782 6.428295 ACTTCATAGTCTTAGCAGAGGTAGT 58.572 40.000 0.00 0.00 0.00 2.73
3828 4239 7.372451 TGTATGTTTAATGGTTCTCCTTTCG 57.628 36.000 0.00 0.00 33.88 3.46
4189 4951 9.520204 CCATCATAGTTCATTTGGTTAATTCAC 57.480 33.333 0.00 0.00 0.00 3.18
4198 5766 5.449041 CGTTGACCCATCATAGTTCATTTGG 60.449 44.000 0.00 0.00 33.85 3.28
4214 5782 3.723348 GCGCTGAACCGTTGACCC 61.723 66.667 0.00 0.00 0.00 4.46
4236 5804 4.324267 ACATAACTACAAGTTGGAGGCAC 58.676 43.478 19.43 0.00 39.11 5.01
4295 5863 3.877508 GACACTTATTTTGGATCGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4371 5939 4.035112 ACAATTATTCCCTCCGGTCTACA 58.965 43.478 0.00 0.00 0.00 2.74
4372 5940 4.684484 ACAATTATTCCCTCCGGTCTAC 57.316 45.455 0.00 0.00 0.00 2.59
4373 5941 5.221581 GCTAACAATTATTCCCTCCGGTCTA 60.222 44.000 0.00 0.00 0.00 2.59
4374 5942 4.444449 GCTAACAATTATTCCCTCCGGTCT 60.444 45.833 0.00 0.00 0.00 3.85
4375 5943 3.813724 GCTAACAATTATTCCCTCCGGTC 59.186 47.826 0.00 0.00 0.00 4.79
4376 5944 3.458487 AGCTAACAATTATTCCCTCCGGT 59.542 43.478 0.00 0.00 0.00 5.28
4377 5945 4.086706 AGCTAACAATTATTCCCTCCGG 57.913 45.455 0.00 0.00 0.00 5.14
4386 5954 8.630054 TGGTAGAACAACAAGCTAACAATTAT 57.370 30.769 0.00 0.00 29.52 1.28
4421 5989 7.554835 TGTAGGAAGAAAAGAAGCTGTTGTTAA 59.445 33.333 0.00 0.00 0.00 2.01
4427 5995 4.348168 TCCTGTAGGAAGAAAAGAAGCTGT 59.652 41.667 0.00 0.00 42.18 4.40
4577 6145 0.803380 GCTCCCGCATCATGTTTTGC 60.803 55.000 7.63 7.63 35.78 3.68
4747 6318 6.174720 TCTGTTAATATGTGGGGATCAGAC 57.825 41.667 0.00 0.00 0.00 3.51
4812 6383 5.705441 TGAACACCATTATCTGTTTCAGGAC 59.295 40.000 0.00 0.00 30.59 3.85
5089 6660 3.120304 GCTGTTTGAACGGGATGTAAGAC 60.120 47.826 4.97 0.00 35.81 3.01
5100 6671 6.103997 TCCTATACTTTAGGCTGTTTGAACG 58.896 40.000 0.00 0.00 34.74 3.95
5117 6688 7.312154 CAGATGCTGAAGTATGACTCCTATAC 58.688 42.308 0.00 0.00 32.44 1.47
5127 6698 6.221659 TCTTAGATGCAGATGCTGAAGTATG 58.778 40.000 6.35 0.00 42.66 2.39
5225 6797 5.164119 CGCAAAAGCTTCAAGCATCTTAAAG 60.164 40.000 13.10 0.00 45.56 1.85
5276 6852 8.383619 GTGTGCGATATCACCATTTATATCTTC 58.616 37.037 3.12 0.00 34.35 2.87
5277 6853 8.256611 GTGTGCGATATCACCATTTATATCTT 57.743 34.615 3.12 0.00 34.35 2.40
5278 6854 7.834068 GTGTGCGATATCACCATTTATATCT 57.166 36.000 3.12 0.00 34.35 1.98
5321 6897 1.339920 TGTTCACCATGCATGACCGAT 60.340 47.619 28.31 4.99 0.00 4.18
5324 6900 2.492881 TGATTGTTCACCATGCATGACC 59.507 45.455 28.31 10.55 0.00 4.02
5339 6915 6.830324 ACATGCTGGTATTGAGTATTGATTGT 59.170 34.615 0.00 0.00 0.00 2.71
5352 6928 5.221783 TGCTCTCATGATACATGCTGGTATT 60.222 40.000 0.00 0.00 34.22 1.89
5386 6962 8.436200 GCGGCAATTTATGTTGTTACAAAAATA 58.564 29.630 0.00 0.00 37.91 1.40
5407 6983 7.561021 TCAAACATAGAATATTTAAGCGGCA 57.439 32.000 1.45 0.00 0.00 5.69
5540 7116 4.025647 CGAGTCTTTGAAGTTCTCCAACAC 60.026 45.833 4.17 0.00 34.60 3.32
5552 7128 0.320421 CCTTCCGGCGAGTCTTTGAA 60.320 55.000 9.30 0.00 0.00 2.69
5576 7152 8.219546 TGTTTCAACATAACTCAGACATGAAA 57.780 30.769 0.00 0.00 32.06 2.69
5613 7189 2.789409 AGACCCACTGGCACTTATTC 57.211 50.000 0.00 0.00 33.59 1.75
5632 7208 8.239038 TCCAATTGTATTCAGTGGTGTAAAAA 57.761 30.769 4.43 0.00 34.34 1.94
5637 7213 5.774690 ACATTCCAATTGTATTCAGTGGTGT 59.225 36.000 4.43 1.46 34.34 4.16
5696 7275 2.422597 CAACTCCTCACCAATACGCAA 58.577 47.619 0.00 0.00 0.00 4.85
5799 7396 2.432146 CAGATCCAGCTAGGCAGTGTTA 59.568 50.000 0.00 0.00 37.29 2.41
5831 7428 0.745468 GACGGAGGGAGTATGACCAC 59.255 60.000 0.00 0.00 0.00 4.16
5881 7478 9.571810 CATAATGTAAGACATTTTTGCAAGCTA 57.428 29.630 9.92 0.00 45.80 3.32
5882 7479 7.546667 CCATAATGTAAGACATTTTTGCAAGCT 59.453 33.333 9.92 0.00 45.80 3.74
5883 7480 7.201548 CCCATAATGTAAGACATTTTTGCAAGC 60.202 37.037 9.92 0.00 45.80 4.01
5884 7481 8.034215 TCCCATAATGTAAGACATTTTTGCAAG 58.966 33.333 9.92 0.00 45.80 4.01
5885 7482 7.816995 GTCCCATAATGTAAGACATTTTTGCAA 59.183 33.333 9.92 0.00 45.80 4.08
5886 7483 7.319646 GTCCCATAATGTAAGACATTTTTGCA 58.680 34.615 9.92 0.00 45.80 4.08
5887 7484 6.472163 CGTCCCATAATGTAAGACATTTTTGC 59.528 38.462 9.92 0.00 45.80 3.68
5888 7485 6.972328 CCGTCCCATAATGTAAGACATTTTTG 59.028 38.462 9.92 8.46 45.80 2.44
5889 7486 6.887545 TCCGTCCCATAATGTAAGACATTTTT 59.112 34.615 9.92 0.00 45.80 1.94
5890 7487 6.419791 TCCGTCCCATAATGTAAGACATTTT 58.580 36.000 9.92 0.33 45.80 1.82
5891 7488 5.996644 TCCGTCCCATAATGTAAGACATTT 58.003 37.500 9.92 0.00 45.80 2.32
5893 7490 4.040461 CCTCCGTCCCATAATGTAAGACAT 59.960 45.833 0.00 0.00 41.31 3.06
5894 7491 3.386726 CCTCCGTCCCATAATGTAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
5895 7492 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
5896 7493 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5897 7494 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
5898 7495 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
5899 7496 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
5900 7497 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
5901 7498 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
5902 7499 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
5957 7554 6.306987 TGAGAAAAAGGCCTCTAGACAAATT 58.693 36.000 5.23 0.00 0.00 1.82
5994 7699 8.415950 TTTGTTTGGCTTCCTCATAGAAATTA 57.584 30.769 0.00 0.00 0.00 1.40
6010 7715 7.222417 CCATTTCCTTTTTCAAATTTGTTTGGC 59.778 33.333 17.47 0.00 32.99 4.52
6098 7803 9.190858 TCCAAACATATTCAAAATTTCTCAACG 57.809 29.630 0.00 0.00 0.00 4.10
6126 7831 9.719355 TGCTAATTCACTTAAAATCTACAGTCA 57.281 29.630 0.00 0.00 0.00 3.41
6158 7864 6.519679 TGTGTTCAAGTACCGTATCACTAT 57.480 37.500 0.00 0.00 0.00 2.12
6167 7873 1.526887 CTGTGCTGTGTTCAAGTACCG 59.473 52.381 0.00 0.00 0.00 4.02
6172 7878 2.161012 CCATAGCTGTGCTGTGTTCAAG 59.839 50.000 4.68 0.00 44.35 3.02
6210 7916 5.006649 TCTGACGCTAATATTTCATGCACAC 59.993 40.000 0.00 0.00 0.00 3.82
6222 7928 5.410439 GGGTTCAAAAACTCTGACGCTAATA 59.590 40.000 0.00 0.00 32.75 0.98
6339 8046 1.699634 CCTTCCACTTCCAGTCCTGAA 59.300 52.381 0.00 0.00 0.00 3.02
6374 8081 2.985001 TCCACACAGGATAAGCCGA 58.015 52.632 0.00 0.00 43.07 5.54
6423 8130 6.990939 GGAAAACTACCACTTCTAGTGTTCTT 59.009 38.462 6.13 0.00 44.50 2.52
6424 8131 6.099269 TGGAAAACTACCACTTCTAGTGTTCT 59.901 38.462 6.13 0.00 44.50 3.01
6425 8132 6.285990 TGGAAAACTACCACTTCTAGTGTTC 58.714 40.000 6.13 0.00 44.50 3.18
6426 8133 6.243216 TGGAAAACTACCACTTCTAGTGTT 57.757 37.500 6.13 0.00 44.50 3.32
6427 8134 5.881923 TGGAAAACTACCACTTCTAGTGT 57.118 39.130 6.13 0.00 44.50 3.55
6437 8144 3.898741 GGGGATTTTGTGGAAAACTACCA 59.101 43.478 0.00 0.00 33.86 3.25
6438 8145 3.898741 TGGGGATTTTGTGGAAAACTACC 59.101 43.478 0.00 0.00 33.86 3.18
6439 8146 5.303333 TCTTGGGGATTTTGTGGAAAACTAC 59.697 40.000 0.00 0.00 33.86 2.73
6440 8147 5.459505 TCTTGGGGATTTTGTGGAAAACTA 58.540 37.500 0.00 0.00 33.86 2.24
6441 8148 4.294347 TCTTGGGGATTTTGTGGAAAACT 58.706 39.130 0.00 0.00 33.86 2.66
6442 8149 4.681074 TCTTGGGGATTTTGTGGAAAAC 57.319 40.909 0.00 0.00 33.86 2.43
6443 8150 7.380423 TTTATCTTGGGGATTTTGTGGAAAA 57.620 32.000 0.00 0.00 35.98 2.29
6444 8151 7.291182 TCTTTTATCTTGGGGATTTTGTGGAAA 59.709 33.333 0.00 0.00 35.98 3.13
6445 8152 6.784969 TCTTTTATCTTGGGGATTTTGTGGAA 59.215 34.615 0.00 0.00 35.98 3.53
6446 8153 6.318913 TCTTTTATCTTGGGGATTTTGTGGA 58.681 36.000 0.00 0.00 35.98 4.02
6447 8154 6.603940 TCTTTTATCTTGGGGATTTTGTGG 57.396 37.500 0.00 0.00 35.98 4.17
6448 8155 7.384932 GTGTTCTTTTATCTTGGGGATTTTGTG 59.615 37.037 0.00 0.00 35.98 3.33
6449 8156 7.290014 AGTGTTCTTTTATCTTGGGGATTTTGT 59.710 33.333 0.00 0.00 35.98 2.83
6450 8157 7.670364 AGTGTTCTTTTATCTTGGGGATTTTG 58.330 34.615 0.00 0.00 35.98 2.44
6451 8158 7.855784 AGTGTTCTTTTATCTTGGGGATTTT 57.144 32.000 0.00 0.00 35.98 1.82
6452 8159 8.390921 TCTAGTGTTCTTTTATCTTGGGGATTT 58.609 33.333 0.00 0.00 35.98 2.17
6453 8160 7.928873 TCTAGTGTTCTTTTATCTTGGGGATT 58.071 34.615 0.00 0.00 35.98 3.01
6454 8161 7.510675 TCTAGTGTTCTTTTATCTTGGGGAT 57.489 36.000 0.00 0.00 38.38 3.85
6455 8162 6.945636 TCTAGTGTTCTTTTATCTTGGGGA 57.054 37.500 0.00 0.00 0.00 4.81
6456 8163 7.119846 CACTTCTAGTGTTCTTTTATCTTGGGG 59.880 40.741 0.00 0.00 41.19 4.96
6457 8164 7.119846 CCACTTCTAGTGTTCTTTTATCTTGGG 59.880 40.741 6.13 0.00 44.50 4.12
6458 8165 7.661847 ACCACTTCTAGTGTTCTTTTATCTTGG 59.338 37.037 6.13 0.00 44.50 3.61
6459 8166 8.608844 ACCACTTCTAGTGTTCTTTTATCTTG 57.391 34.615 6.13 0.00 44.50 3.02
6460 8167 9.930693 CTACCACTTCTAGTGTTCTTTTATCTT 57.069 33.333 6.13 0.00 44.50 2.40
6461 8168 9.091220 ACTACCACTTCTAGTGTTCTTTTATCT 57.909 33.333 6.13 0.00 44.50 1.98
6462 8169 9.708092 AACTACCACTTCTAGTGTTCTTTTATC 57.292 33.333 6.13 0.00 44.50 1.75
6464 8171 9.895138 AAAACTACCACTTCTAGTGTTCTTTTA 57.105 29.630 6.13 0.00 44.50 1.52
6465 8172 8.803397 AAAACTACCACTTCTAGTGTTCTTTT 57.197 30.769 6.13 2.51 44.50 2.27
6466 8173 9.322773 GTAAAACTACCACTTCTAGTGTTCTTT 57.677 33.333 6.13 2.15 44.50 2.52
6508 8215 9.561069 GGTACAGAGTGAATAAATTATGGATGT 57.439 33.333 0.00 0.00 0.00 3.06
6645 8352 7.435784 TCCGTTGGCTTTTAAAAAGAATTACAC 59.564 33.333 1.66 0.00 0.00 2.90
6659 8366 2.490991 GTACAGACTCCGTTGGCTTTT 58.509 47.619 0.00 0.00 0.00 2.27
6803 8633 4.522114 CATTGTTTCCCCTTTTTGTGGTT 58.478 39.130 0.00 0.00 0.00 3.67
6809 8639 6.075315 AGTACTAGCATTGTTTCCCCTTTTT 58.925 36.000 0.00 0.00 0.00 1.94
6817 8647 6.128254 GGTTCCAGAAGTACTAGCATTGTTTC 60.128 42.308 0.00 0.00 0.00 2.78
6829 8661 2.029290 TCGAAGCAGGTTCCAGAAGTAC 60.029 50.000 6.77 0.00 0.00 2.73
6832 8664 2.093764 AGATCGAAGCAGGTTCCAGAAG 60.094 50.000 6.77 0.00 0.00 2.85
6833 8665 1.902508 AGATCGAAGCAGGTTCCAGAA 59.097 47.619 6.77 0.00 0.00 3.02
6834 8666 1.561643 AGATCGAAGCAGGTTCCAGA 58.438 50.000 6.77 0.00 0.00 3.86
6878 8713 5.245531 ACTTCAATGTGCGAATTTCTAGGA 58.754 37.500 0.00 0.00 0.00 2.94
6880 8715 6.602179 TGAACTTCAATGTGCGAATTTCTAG 58.398 36.000 0.00 0.00 34.73 2.43
6887 8722 6.038985 TGAAAATTGAACTTCAATGTGCGAA 58.961 32.000 16.18 0.00 45.57 4.70
6939 8774 6.204688 CCTCTGAATACAGTTTTGTAAGTGCA 59.795 38.462 0.00 0.00 42.72 4.57
7012 8848 7.015289 CAGTGGAAGTGTTGTAATTTGTATCG 58.985 38.462 0.00 0.00 30.93 2.92
7032 8868 3.466836 TGTTGCTCTAGTTTGACAGTGG 58.533 45.455 0.00 0.00 0.00 4.00
7070 8906 6.797033 GTCGATGGAGAAATTACAGTTTTGTG 59.203 38.462 0.00 0.00 38.23 3.33
7224 9060 4.143543 TGTTCAGATCCATTCAACTGCAA 58.856 39.130 0.00 0.00 0.00 4.08
7275 9112 4.082949 CGATGATTACTCTATGCGTGGGTA 60.083 45.833 0.00 0.00 0.00 3.69
7280 9119 4.072839 TCTCCGATGATTACTCTATGCGT 58.927 43.478 0.00 0.00 0.00 5.24
7284 9123 8.865090 ACTCAAAATCTCCGATGATTACTCTAT 58.135 33.333 3.88 0.00 35.82 1.98
7384 9224 5.246981 TCATGTCCTCTTGTTCCATCTTT 57.753 39.130 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.