Multiple sequence alignment - TraesCS3B01G314000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G314000 chr3B 100.000 8380 0 0 1 8380 504987707 504979328 0.000000e+00 15476
1 TraesCS3B01G314000 chr3B 92.453 106 8 0 1 106 8069726 8069831 1.460000e-32 152
2 TraesCS3B01G314000 chr3B 91.743 109 8 1 1 108 766580751 766580859 5.240000e-32 150
3 TraesCS3B01G314000 chr3A 95.584 3918 125 22 3933 7824 509423234 509419339 0.000000e+00 6233
4 TraesCS3B01G314000 chr3A 91.214 1400 66 24 733 2119 509428335 509426980 0.000000e+00 1851
5 TraesCS3B01G314000 chr3A 85.865 1231 61 32 2145 3294 509426993 509425795 0.000000e+00 1205
6 TraesCS3B01G314000 chr3A 87.284 637 50 20 104 728 509429142 509428525 0.000000e+00 699
7 TraesCS3B01G314000 chr3A 90.431 418 28 8 7832 8238 509419292 509418876 2.660000e-149 540
8 TraesCS3B01G314000 chr3A 92.615 325 21 1 3594 3918 509423541 509423220 1.650000e-126 464
9 TraesCS3B01G314000 chr3A 90.763 249 15 3 3297 3538 509424915 509424668 8.110000e-85 326
10 TraesCS3B01G314000 chr3D 94.279 3828 134 45 4616 8380 388334144 388330339 0.000000e+00 5777
11 TraesCS3B01G314000 chr3D 90.530 1848 108 39 105 1920 388338794 388336982 0.000000e+00 2381
12 TraesCS3B01G314000 chr3D 90.390 1051 35 17 2840 3864 388336021 388335011 0.000000e+00 1321
13 TraesCS3B01G314000 chr3D 96.257 668 22 2 3933 4598 388334998 388334332 0.000000e+00 1092
14 TraesCS3B01G314000 chr3D 91.198 693 19 17 2145 2820 388336761 388336094 0.000000e+00 904
15 TraesCS3B01G314000 chr3D 93.069 202 10 3 1919 2119 388336946 388336748 8.230000e-75 292
16 TraesCS3B01G314000 chr1A 80.523 421 73 8 5661 6080 533449579 533449167 1.760000e-81 315
17 TraesCS3B01G314000 chr1D 81.938 227 39 2 6220 6444 436190714 436190488 3.090000e-44 191
18 TraesCS3B01G314000 chr1B 81.498 227 40 2 6220 6444 591111026 591110800 1.440000e-42 185
19 TraesCS3B01G314000 chr1B 92.593 108 8 0 1 108 593119711 593119818 1.130000e-33 156
20 TraesCS3B01G314000 chr1B 92.453 106 8 0 1 106 174449999 174450104 1.460000e-32 152
21 TraesCS3B01G314000 chr4B 91.818 110 9 0 1 110 357733181 357733290 4.050000e-33 154
22 TraesCS3B01G314000 chr4B 92.453 106 8 0 1 106 139704412 139704307 1.460000e-32 152
23 TraesCS3B01G314000 chr4B 92.453 106 8 0 1 106 258520973 258521078 1.460000e-32 152
24 TraesCS3B01G314000 chr6B 91.743 109 9 0 1 109 253173469 253173361 1.460000e-32 152
25 TraesCS3B01G314000 chr5B 92.453 106 8 0 1 106 566674983 566674878 1.460000e-32 152
26 TraesCS3B01G314000 chr5A 91.011 89 8 0 1509 1597 487743739 487743651 4.110000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G314000 chr3B 504979328 504987707 8379 True 15476.000000 15476 100.000000 1 8380 1 chr3B.!!$R1 8379
1 TraesCS3B01G314000 chr3A 509418876 509429142 10266 True 1616.857143 6233 90.536571 104 8238 7 chr3A.!!$R1 8134
2 TraesCS3B01G314000 chr3D 388330339 388338794 8455 True 1961.166667 5777 92.620500 105 8380 6 chr3D.!!$R1 8275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 361 0.099259 TAATACACGCGCGTACTGCT 59.901 50.000 37.24 20.56 43.27 4.24 F
1657 1912 0.033504 CGCGGAATGCATAGGTAGGT 59.966 55.000 0.00 0.00 46.97 3.08 F
1964 2265 0.390603 TGTCCGTTAGCCATTCCGTG 60.391 55.000 0.00 0.00 0.00 4.94 F
2809 3167 0.517316 GCGTCATCAGCTTTCCGTTT 59.483 50.000 0.00 0.00 0.00 3.60 F
4381 6846 0.169672 CCTTGAAGCTGAACATGGCG 59.830 55.000 0.00 0.00 0.00 5.69 F
4396 6861 2.811514 GGCGATCATCCTCCTGCCA 61.812 63.158 0.00 0.00 42.03 4.92 F
5513 8156 2.752354 TCGCCCTTTGAATGGTATGTTG 59.248 45.455 0.00 0.00 0.00 3.33 F
5864 8507 3.106054 TCCCTGTATTTTAGCGGGTACA 58.894 45.455 0.00 0.00 36.30 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 1943 0.030908 GGATACGGTTCGAGCAGAGG 59.969 60.000 6.39 0.0 0.00 3.69 R
3398 4733 0.541764 GTTGGGGCCCTTCAATGTGA 60.542 55.000 25.93 0.0 0.00 3.58 R
3717 6153 0.683504 TAGACCAGCTCGGAAGGGAC 60.684 60.000 8.91 0.0 38.63 4.46 R
4803 7439 0.315869 GCCGTGGAAAATCGCATACG 60.316 55.000 0.00 0.0 42.01 3.06 R
5513 8156 0.310854 GGCCACAAGTGTACAGCAAC 59.689 55.000 0.00 0.0 0.00 4.17 R
6265 8910 1.072489 TGTGGCTTATTCCGACCAACA 59.928 47.619 0.00 0.0 33.03 3.33 R
6610 9255 0.864455 GAAGCATAGTGATGAGCGCC 59.136 55.000 2.29 0.0 34.73 6.53 R
7828 10515 1.074405 AGCCTTGAACCAATCAGCTCA 59.926 47.619 0.00 0.0 35.31 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.420628 ACAATGTTTGGTGACATGCG 57.579 45.000 0.00 0.00 40.03 4.73
24 25 1.952990 ACAATGTTTGGTGACATGCGA 59.047 42.857 0.00 0.00 40.03 5.10
25 26 2.360483 ACAATGTTTGGTGACATGCGAA 59.640 40.909 0.00 0.00 40.03 4.70
26 27 3.181482 ACAATGTTTGGTGACATGCGAAA 60.181 39.130 0.00 0.00 40.03 3.46
27 28 3.724508 ATGTTTGGTGACATGCGAAAA 57.275 38.095 0.00 0.00 42.32 2.29
28 29 2.803451 TGTTTGGTGACATGCGAAAAC 58.197 42.857 0.00 0.00 42.32 2.43
29 30 2.164422 TGTTTGGTGACATGCGAAAACA 59.836 40.909 0.00 0.82 42.32 2.83
30 31 3.181482 TGTTTGGTGACATGCGAAAACAT 60.181 39.130 0.00 0.00 42.32 2.71
31 32 3.724508 TTGGTGACATGCGAAAACATT 57.275 38.095 0.00 0.00 42.32 2.71
32 33 3.724508 TGGTGACATGCGAAAACATTT 57.275 38.095 0.00 0.00 33.40 2.32
33 34 4.052159 TGGTGACATGCGAAAACATTTT 57.948 36.364 0.00 0.00 33.40 1.82
34 35 5.188327 TGGTGACATGCGAAAACATTTTA 57.812 34.783 0.00 0.00 33.40 1.52
35 36 5.777802 TGGTGACATGCGAAAACATTTTAT 58.222 33.333 0.00 0.00 33.40 1.40
36 37 6.219473 TGGTGACATGCGAAAACATTTTATT 58.781 32.000 0.00 0.00 33.40 1.40
37 38 7.371159 TGGTGACATGCGAAAACATTTTATTA 58.629 30.769 0.00 0.00 33.40 0.98
38 39 7.540400 TGGTGACATGCGAAAACATTTTATTAG 59.460 33.333 0.00 0.00 33.40 1.73
39 40 7.540745 GGTGACATGCGAAAACATTTTATTAGT 59.459 33.333 0.00 0.00 0.00 2.24
40 41 8.911662 GTGACATGCGAAAACATTTTATTAGTT 58.088 29.630 0.00 0.00 0.00 2.24
41 42 9.469807 TGACATGCGAAAACATTTTATTAGTTT 57.530 25.926 0.00 0.00 37.08 2.66
81 82 9.696917 AATTTGACAGAAAATACAATGAAGACC 57.303 29.630 0.00 0.00 0.00 3.85
82 83 7.815840 TTGACAGAAAATACAATGAAGACCA 57.184 32.000 0.00 0.00 0.00 4.02
83 84 7.815840 TGACAGAAAATACAATGAAGACCAA 57.184 32.000 0.00 0.00 0.00 3.67
84 85 8.408043 TGACAGAAAATACAATGAAGACCAAT 57.592 30.769 0.00 0.00 0.00 3.16
85 86 9.513906 TGACAGAAAATACAATGAAGACCAATA 57.486 29.630 0.00 0.00 0.00 1.90
90 91 9.366216 GAAAATACAATGAAGACCAATAAACCC 57.634 33.333 0.00 0.00 0.00 4.11
91 92 6.693315 ATACAATGAAGACCAATAAACCCG 57.307 37.500 0.00 0.00 0.00 5.28
92 93 3.761752 ACAATGAAGACCAATAAACCCGG 59.238 43.478 0.00 0.00 0.00 5.73
93 94 4.013728 CAATGAAGACCAATAAACCCGGA 58.986 43.478 0.73 0.00 0.00 5.14
94 95 3.062122 TGAAGACCAATAAACCCGGAC 57.938 47.619 0.73 0.00 0.00 4.79
95 96 2.004733 GAAGACCAATAAACCCGGACG 58.995 52.381 0.73 0.00 0.00 4.79
96 97 0.251073 AGACCAATAAACCCGGACGG 59.749 55.000 0.73 3.25 37.81 4.79
97 98 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
98 99 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
112 113 0.529378 ACGGAGTTAGTACAAGCCCG 59.471 55.000 10.66 10.66 37.78 6.13
125 126 3.512516 GCCCGTCAGAGCATTGGC 61.513 66.667 0.00 0.00 41.61 4.52
133 134 4.465512 GAGCATTGGCCGCGTGTG 62.466 66.667 4.92 0.00 42.56 3.82
162 166 2.832733 GCCGCCCCTCTAATATCTTACT 59.167 50.000 0.00 0.00 0.00 2.24
209 214 1.825641 GCCCAACACCAACCACCTTAT 60.826 52.381 0.00 0.00 0.00 1.73
210 215 2.555670 GCCCAACACCAACCACCTTATA 60.556 50.000 0.00 0.00 0.00 0.98
237 242 6.227522 TCATCAACGTTAGGAAAGATCACAA 58.772 36.000 0.00 0.00 0.00 3.33
246 251 7.480810 GTTAGGAAAGATCACAACAACAGTTT 58.519 34.615 0.00 0.00 0.00 2.66
248 253 6.564328 AGGAAAGATCACAACAACAGTTTTC 58.436 36.000 0.00 0.00 0.00 2.29
338 348 3.457012 GCCCAAACTAGACCCCTAATACA 59.543 47.826 0.00 0.00 0.00 2.29
351 361 0.099259 TAATACACGCGCGTACTGCT 59.901 50.000 37.24 20.56 43.27 4.24
373 386 1.230635 CCACGCTTCCTCCACTGTTG 61.231 60.000 0.00 0.00 0.00 3.33
439 452 2.035066 GCACTGCAAAATTCACCACTCT 59.965 45.455 0.00 0.00 0.00 3.24
449 465 5.948992 AATTCACCACTCTTTGAAGCTAC 57.051 39.130 0.00 0.00 35.25 3.58
451 467 3.995199 TCACCACTCTTTGAAGCTACAG 58.005 45.455 0.00 0.00 0.00 2.74
454 470 4.999950 CACCACTCTTTGAAGCTACAGAAT 59.000 41.667 0.00 0.00 0.00 2.40
467 483 3.365364 GCTACAGAATTGTGGTCTTGCAC 60.365 47.826 7.59 0.00 38.01 4.57
470 486 2.227388 CAGAATTGTGGTCTTGCACTCC 59.773 50.000 0.00 0.00 0.00 3.85
480 496 3.006247 GTCTTGCACTCCTGGATTCTTC 58.994 50.000 0.00 0.00 0.00 2.87
607 623 8.554835 ACTACTATTTCAAAAAGAAGAGCTCC 57.445 34.615 10.93 0.00 37.57 4.70
626 651 1.507141 CGCAAGTTGGAGTGTGGACC 61.507 60.000 4.75 0.00 0.00 4.46
634 659 1.226323 GAGTGTGGACCGTCGATCG 60.226 63.158 9.36 9.36 39.52 3.69
642 667 4.514577 CCGTCGATCGCCTTGCCT 62.515 66.667 11.09 0.00 38.35 4.75
695 720 1.519455 GCCCGTGTCATTCTCTCCG 60.519 63.158 0.00 0.00 0.00 4.63
729 939 4.101119 CCCACTGATCTTCCGGTACTTAAT 59.899 45.833 0.00 0.00 0.00 1.40
730 940 5.303589 CCCACTGATCTTCCGGTACTTAATA 59.696 44.000 0.00 0.00 0.00 0.98
731 941 6.183360 CCCACTGATCTTCCGGTACTTAATAA 60.183 42.308 0.00 0.00 0.00 1.40
749 962 2.964389 GCCGCTGCTGCTACTAGC 60.964 66.667 14.03 0.61 43.95 3.42
890 1109 1.530655 CGCCTTTCCCCCACAGTTT 60.531 57.895 0.00 0.00 0.00 2.66
892 1111 1.185618 GCCTTTCCCCCACAGTTTCC 61.186 60.000 0.00 0.00 0.00 3.13
893 1112 0.893727 CCTTTCCCCCACAGTTTCCG 60.894 60.000 0.00 0.00 0.00 4.30
894 1113 0.109723 CTTTCCCCCACAGTTTCCGA 59.890 55.000 0.00 0.00 0.00 4.55
895 1114 0.109723 TTTCCCCCACAGTTTCCGAG 59.890 55.000 0.00 0.00 0.00 4.63
896 1115 1.774894 TTCCCCCACAGTTTCCGAGG 61.775 60.000 0.00 0.00 0.00 4.63
897 1116 2.221299 CCCCCACAGTTTCCGAGGA 61.221 63.158 0.00 0.00 0.00 3.71
898 1117 1.296715 CCCCACAGTTTCCGAGGAG 59.703 63.158 0.00 0.00 0.00 3.69
899 1118 1.376037 CCCACAGTTTCCGAGGAGC 60.376 63.158 0.00 0.00 0.00 4.70
983 1225 2.425592 TGTGCGTTGGGGACAGAG 59.574 61.111 0.00 0.00 42.55 3.35
984 1226 2.358737 GTGCGTTGGGGACAGAGG 60.359 66.667 0.00 0.00 44.54 3.69
985 1227 4.329545 TGCGTTGGGGACAGAGGC 62.330 66.667 0.00 0.00 44.54 4.70
986 1228 4.021925 GCGTTGGGGACAGAGGCT 62.022 66.667 0.00 0.00 44.54 4.58
987 1229 2.046892 CGTTGGGGACAGAGGCTG 60.047 66.667 0.00 0.00 44.54 4.85
988 1230 2.352805 GTTGGGGACAGAGGCTGG 59.647 66.667 0.00 0.00 44.54 4.85
989 1231 2.935481 TTGGGGACAGAGGCTGGG 60.935 66.667 0.00 0.00 44.54 4.45
992 1234 4.106925 GGGACAGAGGCTGGGCAG 62.107 72.222 0.00 0.00 35.51 4.85
1128 1379 2.743718 CTGGTGGAGGTCACGCTT 59.256 61.111 0.00 0.00 46.96 4.68
1318 1572 4.824166 CGTCGTCGTACCGGCTGG 62.824 72.222 11.02 11.02 42.84 4.85
1428 1682 4.351054 GAGGGCCACCACCACCAG 62.351 72.222 6.18 0.00 40.13 4.00
1657 1912 0.033504 CGCGGAATGCATAGGTAGGT 59.966 55.000 0.00 0.00 46.97 3.08
1678 1933 4.996434 CCATCATCCCGCCCGCTC 62.996 72.222 0.00 0.00 0.00 5.03
1688 1943 2.517166 GCCCGCTCCTCCATTTCC 60.517 66.667 0.00 0.00 0.00 3.13
1907 2170 5.874810 CCTCCAAATCTTCTTCGACATGTAA 59.125 40.000 0.00 0.00 0.00 2.41
1908 2171 6.540189 CCTCCAAATCTTCTTCGACATGTAAT 59.460 38.462 0.00 0.00 0.00 1.89
1949 2249 5.585047 AGCCTGTAATTCGATTTTACTGTCC 59.415 40.000 15.64 10.29 32.09 4.02
1960 2261 5.501897 CGATTTTACTGTCCGTTAGCCATTC 60.502 44.000 0.00 0.00 0.00 2.67
1964 2265 0.390603 TGTCCGTTAGCCATTCCGTG 60.391 55.000 0.00 0.00 0.00 4.94
1968 2269 1.434555 CGTTAGCCATTCCGTGACAA 58.565 50.000 0.00 0.00 0.00 3.18
1969 2270 1.127951 CGTTAGCCATTCCGTGACAAC 59.872 52.381 0.00 0.00 0.00 3.32
1971 2272 2.747446 GTTAGCCATTCCGTGACAACAT 59.253 45.455 0.00 0.00 0.00 2.71
1972 2273 1.167851 AGCCATTCCGTGACAACATG 58.832 50.000 0.00 0.00 0.00 3.21
1981 2282 2.788786 CCGTGACAACATGTTTTGCTTC 59.211 45.455 8.77 1.54 0.00 3.86
1995 2296 7.071014 TGTTTTGCTTCCTTTCAATTTCAAC 57.929 32.000 0.00 0.00 0.00 3.18
2124 2425 9.875675 TGTTTTCAAACATTGCTATTTATTTGC 57.124 25.926 0.79 0.00 43.45 3.68
2125 2426 9.328721 GTTTTCAAACATTGCTATTTATTTGCC 57.671 29.630 0.00 0.00 38.74 4.52
2126 2427 8.845413 TTTCAAACATTGCTATTTATTTGCCT 57.155 26.923 0.00 0.00 0.00 4.75
2127 2428 8.477984 TTCAAACATTGCTATTTATTTGCCTC 57.522 30.769 0.00 0.00 0.00 4.70
2128 2429 7.041107 TCAAACATTGCTATTTATTTGCCTCC 58.959 34.615 0.00 0.00 0.00 4.30
2129 2430 5.186996 ACATTGCTATTTATTTGCCTCCG 57.813 39.130 0.00 0.00 0.00 4.63
2130 2431 4.644685 ACATTGCTATTTATTTGCCTCCGT 59.355 37.500 0.00 0.00 0.00 4.69
2131 2432 5.127031 ACATTGCTATTTATTTGCCTCCGTT 59.873 36.000 0.00 0.00 0.00 4.44
2132 2433 5.652994 TTGCTATTTATTTGCCTCCGTTT 57.347 34.783 0.00 0.00 0.00 3.60
2133 2434 5.243426 TGCTATTTATTTGCCTCCGTTTC 57.757 39.130 0.00 0.00 0.00 2.78
2134 2435 4.702612 TGCTATTTATTTGCCTCCGTTTCA 59.297 37.500 0.00 0.00 0.00 2.69
2135 2436 5.184096 TGCTATTTATTTGCCTCCGTTTCAA 59.816 36.000 0.00 0.00 0.00 2.69
2136 2437 6.096695 GCTATTTATTTGCCTCCGTTTCAAA 58.903 36.000 0.00 0.00 34.68 2.69
2137 2438 6.588373 GCTATTTATTTGCCTCCGTTTCAAAA 59.412 34.615 0.00 0.00 34.00 2.44
2138 2439 7.117092 GCTATTTATTTGCCTCCGTTTCAAAAA 59.883 33.333 0.00 0.00 34.00 1.94
2196 2497 4.497473 TCATTTAGGCTTTGGTTTGACG 57.503 40.909 0.00 0.00 0.00 4.35
2197 2498 4.138290 TCATTTAGGCTTTGGTTTGACGA 58.862 39.130 0.00 0.00 0.00 4.20
2198 2499 3.974871 TTTAGGCTTTGGTTTGACGAC 57.025 42.857 0.00 0.00 0.00 4.34
2306 2608 2.226962 ATGGCATTCTCCAGCACTTT 57.773 45.000 0.00 0.00 39.89 2.66
2320 2622 8.103305 TCTCCAGCACTTTTTAATTATCACTCT 58.897 33.333 0.00 0.00 0.00 3.24
2336 2638 3.464878 TCTGTGCTTCCAGAGGACT 57.535 52.632 0.00 0.00 46.01 3.85
2348 2650 3.775316 TCCAGAGGACTAAGGACAATTCC 59.225 47.826 0.00 0.00 43.22 3.01
2384 2687 8.213679 ACCAGTACAGTACTTACTATAATCCGA 58.786 37.037 10.80 0.00 36.76 4.55
2396 2699 2.620251 TAATCCGACATGCAAGGAGG 57.380 50.000 9.72 0.00 37.49 4.30
2450 2753 4.304659 AGAGGATTATTAAGAACCGGGGT 58.695 43.478 6.32 0.00 0.00 4.95
2452 2755 3.137728 AGGATTATTAAGAACCGGGGTGG 59.862 47.826 6.32 0.00 46.41 4.61
2477 2787 2.563179 ACGTAAGAAGCTGTGGTCATCT 59.437 45.455 0.00 0.00 43.62 2.90
2539 2850 1.071542 TCTCACCAACTCGGCAATTCA 59.928 47.619 0.00 0.00 39.03 2.57
2608 2919 3.286915 GAAAGGCCGGGCAGCTTTG 62.287 63.158 31.59 0.00 31.67 2.77
2631 2964 2.069273 CTAGAACGCTTTGTGTGAGGG 58.931 52.381 0.00 0.00 0.00 4.30
2632 2965 1.166531 AGAACGCTTTGTGTGAGGGC 61.167 55.000 0.00 0.00 0.00 5.19
2635 2968 3.257933 GCTTTGTGTGAGGGCGAG 58.742 61.111 0.00 0.00 0.00 5.03
2636 2969 1.301716 GCTTTGTGTGAGGGCGAGA 60.302 57.895 0.00 0.00 0.00 4.04
2637 2970 1.294659 GCTTTGTGTGAGGGCGAGAG 61.295 60.000 0.00 0.00 0.00 3.20
2638 2971 0.671781 CTTTGTGTGAGGGCGAGAGG 60.672 60.000 0.00 0.00 0.00 3.69
2639 2972 2.111999 TTTGTGTGAGGGCGAGAGGG 62.112 60.000 0.00 0.00 0.00 4.30
2640 2973 4.459089 GTGTGAGGGCGAGAGGGC 62.459 72.222 0.00 0.00 41.35 5.19
2642 2975 3.474570 GTGAGGGCGAGAGGGCAT 61.475 66.667 0.00 0.00 44.56 4.40
2643 2976 2.688666 TGAGGGCGAGAGGGCATT 60.689 61.111 0.00 0.00 44.56 3.56
2644 2977 2.110006 GAGGGCGAGAGGGCATTC 59.890 66.667 0.00 0.00 44.56 2.67
2645 2978 3.468326 GAGGGCGAGAGGGCATTCC 62.468 68.421 0.00 0.00 44.56 3.01
2646 2979 4.918201 GGGCGAGAGGGCATTCCG 62.918 72.222 0.00 0.00 44.56 4.30
2647 2980 4.918201 GGCGAGAGGGCATTCCGG 62.918 72.222 0.00 0.00 41.52 5.14
2698 3031 0.811219 TGATTGCCCGCTGATCTTCG 60.811 55.000 0.00 0.00 0.00 3.79
2726 3059 0.605589 CTCGACTCAGGCTGAAAGGT 59.394 55.000 19.29 13.05 0.00 3.50
2809 3167 0.517316 GCGTCATCAGCTTTCCGTTT 59.483 50.000 0.00 0.00 0.00 3.60
2811 3169 1.135972 CGTCATCAGCTTTCCGTTTGG 60.136 52.381 0.00 0.00 0.00 3.28
2816 3174 3.157932 TCAGCTTTCCGTTTGGTTTTG 57.842 42.857 0.00 0.00 36.30 2.44
2817 3175 2.159170 TCAGCTTTCCGTTTGGTTTTGG 60.159 45.455 0.00 0.00 36.30 3.28
2818 3176 2.104170 AGCTTTCCGTTTGGTTTTGGA 58.896 42.857 0.00 0.00 36.30 3.53
2819 3177 2.498078 AGCTTTCCGTTTGGTTTTGGAA 59.502 40.909 0.00 0.00 38.67 3.53
2837 3195 9.921637 GTTTTGGAAGGAAAATGTTACATCATA 57.078 29.630 0.00 0.00 0.00 2.15
3011 3426 1.541588 CTTTAGCTTTGGTGCCTGACC 59.458 52.381 0.00 0.00 46.37 4.02
3063 3484 3.076621 TCTTTGATTGCTGGTGCTACTG 58.923 45.455 0.00 0.00 40.48 2.74
3079 3500 3.427773 GCTACTGCTGTACTCGTTTAGCT 60.428 47.826 0.00 0.00 37.10 3.32
3080 3501 3.662247 ACTGCTGTACTCGTTTAGCTT 57.338 42.857 0.00 0.00 37.10 3.74
3148 3574 7.940850 ACTATTCGCGTAGGTAAACCTTATTA 58.059 34.615 7.04 0.00 46.09 0.98
3178 3629 0.690762 GGAGCAGTTGACCTGGGTTA 59.309 55.000 0.00 0.00 41.81 2.85
3209 3661 1.412453 AAGCCGGTGGAGTTGTACCA 61.412 55.000 1.90 0.00 36.76 3.25
3311 4643 4.308526 GTGATGGGTGCACCTCAG 57.691 61.111 33.91 0.00 41.11 3.35
3328 4660 0.802494 CAGCCGGCGAAATAAACAGT 59.198 50.000 23.20 0.00 0.00 3.55
3430 4765 2.594303 CCAACCACCTGCAGCGAA 60.594 61.111 8.66 0.00 0.00 4.70
3518 4857 6.183360 CCATCATCATTTATATCGAGGTTGGC 60.183 42.308 0.00 0.00 0.00 4.52
3569 6005 4.563061 AGCATCAATTTCTGTTTTGCCTC 58.437 39.130 0.00 0.00 31.31 4.70
3572 6008 4.647424 TCAATTTCTGTTTTGCCTCGTT 57.353 36.364 0.00 0.00 0.00 3.85
3573 6009 4.606961 TCAATTTCTGTTTTGCCTCGTTC 58.393 39.130 0.00 0.00 0.00 3.95
3592 6028 2.592308 GTTCCCCTGCCTGCCTAG 59.408 66.667 0.00 0.00 0.00 3.02
3593 6029 3.411517 TTCCCCTGCCTGCCTAGC 61.412 66.667 0.00 0.00 0.00 3.42
3595 6031 2.446610 CCCCTGCCTGCCTAGCTA 60.447 66.667 0.00 0.00 0.00 3.32
3596 6032 2.515071 CCCCTGCCTGCCTAGCTAG 61.515 68.421 14.20 14.20 0.00 3.42
3597 6033 1.764054 CCCTGCCTGCCTAGCTAGT 60.764 63.158 19.31 0.00 0.00 2.57
3598 6034 1.341156 CCCTGCCTGCCTAGCTAGTT 61.341 60.000 19.31 0.00 0.00 2.24
3629 6065 4.063967 CACCTACAGCCCGTCGCA 62.064 66.667 0.00 0.00 41.38 5.10
3640 6076 4.602259 CGTCGCACCACCACCACT 62.602 66.667 0.00 0.00 0.00 4.00
3647 6083 1.153046 ACCACCACCACTTCCGTTG 60.153 57.895 0.00 0.00 0.00 4.10
3792 6228 4.353777 AGGAATGTAGACTGGCTGTAGAA 58.646 43.478 0.00 0.00 0.00 2.10
3840 6303 4.566759 TCGTTTCTGAAGTCTGAACTGTTG 59.433 41.667 0.00 0.00 35.36 3.33
3841 6304 4.330074 CGTTTCTGAAGTCTGAACTGTTGT 59.670 41.667 0.00 0.00 35.36 3.32
3842 6305 5.563842 GTTTCTGAAGTCTGAACTGTTGTG 58.436 41.667 0.00 0.00 35.36 3.33
3843 6306 3.198068 TCTGAAGTCTGAACTGTTGTGC 58.802 45.455 0.00 0.00 35.36 4.57
3844 6307 3.118629 TCTGAAGTCTGAACTGTTGTGCT 60.119 43.478 0.00 0.00 35.36 4.40
3845 6308 2.938451 TGAAGTCTGAACTGTTGTGCTG 59.062 45.455 0.00 0.00 35.36 4.41
3846 6309 2.988010 AGTCTGAACTGTTGTGCTGA 57.012 45.000 0.00 0.00 33.32 4.26
3847 6310 3.266510 AGTCTGAACTGTTGTGCTGAA 57.733 42.857 0.00 0.00 32.53 3.02
3848 6311 2.939103 AGTCTGAACTGTTGTGCTGAAC 59.061 45.455 0.00 0.00 32.53 3.18
3849 6312 2.939103 GTCTGAACTGTTGTGCTGAACT 59.061 45.455 0.00 0.00 32.53 3.01
3850 6313 3.375299 GTCTGAACTGTTGTGCTGAACTT 59.625 43.478 0.00 0.00 32.53 2.66
3851 6314 4.570772 GTCTGAACTGTTGTGCTGAACTTA 59.429 41.667 0.00 0.00 32.53 2.24
3852 6315 5.237344 GTCTGAACTGTTGTGCTGAACTTAT 59.763 40.000 0.00 0.00 32.53 1.73
3853 6316 5.237127 TCTGAACTGTTGTGCTGAACTTATG 59.763 40.000 0.00 0.00 28.40 1.90
3854 6317 3.904136 ACTGTTGTGCTGAACTTATGC 57.096 42.857 0.00 0.00 0.00 3.14
3855 6318 3.480470 ACTGTTGTGCTGAACTTATGCT 58.520 40.909 0.00 0.00 0.00 3.79
3856 6319 3.885297 ACTGTTGTGCTGAACTTATGCTT 59.115 39.130 0.00 0.00 0.00 3.91
3857 6320 4.224433 CTGTTGTGCTGAACTTATGCTTG 58.776 43.478 0.00 0.00 0.00 4.01
3858 6321 3.004629 TGTTGTGCTGAACTTATGCTTGG 59.995 43.478 0.00 0.00 0.00 3.61
3859 6322 2.862541 TGTGCTGAACTTATGCTTGGT 58.137 42.857 0.00 0.00 0.00 3.67
3860 6323 2.813754 TGTGCTGAACTTATGCTTGGTC 59.186 45.455 0.00 0.00 0.00 4.02
3861 6324 2.813754 GTGCTGAACTTATGCTTGGTCA 59.186 45.455 0.00 0.00 0.00 4.02
3862 6325 2.813754 TGCTGAACTTATGCTTGGTCAC 59.186 45.455 0.00 0.00 0.00 3.67
3863 6326 3.077359 GCTGAACTTATGCTTGGTCACT 58.923 45.455 0.00 0.00 0.00 3.41
3864 6327 3.126000 GCTGAACTTATGCTTGGTCACTC 59.874 47.826 0.00 0.00 0.00 3.51
3865 6328 4.573900 CTGAACTTATGCTTGGTCACTCT 58.426 43.478 0.00 0.00 0.00 3.24
3866 6329 4.973168 TGAACTTATGCTTGGTCACTCTT 58.027 39.130 0.00 0.00 0.00 2.85
3907 6370 4.318831 GGTCGCTGTAAGTAATGCTAATGC 60.319 45.833 0.00 0.00 35.30 3.56
3908 6371 4.270084 GTCGCTGTAAGTAATGCTAATGCA 59.730 41.667 0.00 0.00 45.79 3.96
3909 6372 4.873259 TCGCTGTAAGTAATGCTAATGCAA 59.127 37.500 0.00 0.00 45.16 4.08
3910 6373 5.006649 TCGCTGTAAGTAATGCTAATGCAAG 59.993 40.000 0.00 0.00 45.16 4.01
3911 6374 5.220662 CGCTGTAAGTAATGCTAATGCAAGT 60.221 40.000 0.00 0.00 45.16 3.16
3912 6375 6.019075 CGCTGTAAGTAATGCTAATGCAAGTA 60.019 38.462 0.00 0.00 45.16 2.24
3913 6376 7.307396 CGCTGTAAGTAATGCTAATGCAAGTAT 60.307 37.037 0.00 0.00 45.16 2.12
3914 6377 8.345565 GCTGTAAGTAATGCTAATGCAAGTATT 58.654 33.333 6.89 6.89 45.16 1.89
3960 6423 6.868339 GCAAGTATTAATTTGTTCACAGGCTT 59.132 34.615 0.00 0.00 0.00 4.35
3994 6457 6.142817 ACAAATTGATAACTGTCGCTTGAAC 58.857 36.000 0.00 0.00 0.00 3.18
4046 6509 4.248859 TCTGAGAAGTGCACTGCTATTTC 58.751 43.478 27.82 16.12 30.15 2.17
4381 6846 0.169672 CCTTGAAGCTGAACATGGCG 59.830 55.000 0.00 0.00 0.00 5.69
4396 6861 2.811514 GGCGATCATCCTCCTGCCA 61.812 63.158 0.00 0.00 42.03 4.92
4438 6903 2.823829 GCTGCGGAATACAAGGGCG 61.824 63.158 0.00 0.00 0.00 6.13
4547 7013 5.413833 AGACTTTGATAGTGCAATCACCTTG 59.586 40.000 0.42 0.00 44.16 3.61
4785 7421 5.070313 AGCAATTGTGGTTGGTGTTATTCTT 59.930 36.000 7.40 0.00 38.30 2.52
4941 7577 2.878406 CACCGGGATAATCATGGTTGTC 59.122 50.000 6.32 6.90 0.00 3.18
5177 7813 7.745620 ATCGTCCATTCTTTTACTTGAAAGT 57.254 32.000 0.71 0.71 42.91 2.66
5345 7982 9.118236 GTAAAAATACATCAGAAACTTGAGCAC 57.882 33.333 0.00 0.00 0.00 4.40
5513 8156 2.752354 TCGCCCTTTGAATGGTATGTTG 59.248 45.455 0.00 0.00 0.00 3.33
5598 8241 7.989826 AGGATAGACAACACATAATTTCTTGC 58.010 34.615 0.00 0.00 0.00 4.01
5639 8282 4.764172 AGGCAGACTGTCTCATTACATTC 58.236 43.478 7.49 0.00 31.19 2.67
5848 8491 5.880054 AAGAAAACGTATGAACATCCCTG 57.120 39.130 0.00 0.00 0.00 4.45
5864 8507 3.106054 TCCCTGTATTTTAGCGGGTACA 58.894 45.455 0.00 0.00 36.30 2.90
6610 9255 2.107141 GAAGGGGATGCTCGGTCG 59.893 66.667 0.00 0.00 0.00 4.79
6634 9279 2.290093 GCTCATCACTATGCTTCAAGCC 59.710 50.000 7.01 0.00 41.51 4.35
6740 9385 6.580041 CAGTCTGTAAAGTGAATGCATCAAAC 59.420 38.462 0.00 0.00 40.50 2.93
6788 9433 7.848223 ATTGGCATAAATGTTTAAAAGAGGC 57.152 32.000 0.00 0.00 0.00 4.70
6844 9489 6.861065 TTGACTACCAGTGAACTCATTTTC 57.139 37.500 0.00 0.00 0.00 2.29
7046 9692 5.230182 TCCATGCTAGAGTTATTATGTGCG 58.770 41.667 0.00 0.00 0.00 5.34
7097 9743 6.090358 CGTTTAGTTGGATGTACTACACAAGG 59.910 42.308 0.00 0.00 41.55 3.61
7397 10046 5.926542 CACTTGACAGGAAACGAGAATAGAA 59.073 40.000 0.00 0.00 0.00 2.10
7398 10047 6.090088 CACTTGACAGGAAACGAGAATAGAAG 59.910 42.308 0.00 0.00 0.00 2.85
7449 10098 9.420551 GTCCTGGTATATTCTTTATAAAGGACG 57.579 37.037 22.11 1.10 36.66 4.79
7473 10122 0.251077 AGGCCAAGGTGAAGAAGCAG 60.251 55.000 5.01 0.00 0.00 4.24
7480 10129 2.191400 AGGTGAAGAAGCAGCCATAGA 58.809 47.619 0.00 0.00 36.98 1.98
7482 10131 2.093235 GGTGAAGAAGCAGCCATAGACT 60.093 50.000 0.00 0.00 0.00 3.24
7536 10197 3.535561 CGCCAACAAGAAGGATGTAGAT 58.464 45.455 0.00 0.00 0.00 1.98
7578 10239 3.153919 GGCTTTTACAACATGGACCTGA 58.846 45.455 0.00 0.00 0.00 3.86
7591 10267 1.710816 GACCTGAGAGGGGATTCGAT 58.289 55.000 0.00 0.00 40.58 3.59
7613 10289 2.891580 TGTACAGAGACCACCTGAAGAC 59.108 50.000 0.00 0.00 35.69 3.01
7616 10292 1.068194 CAGAGACCACCTGAAGACGAC 60.068 57.143 0.00 0.00 33.65 4.34
7724 10411 9.293404 ACTGTATATTTTTATCATGCAGCTGAT 57.707 29.630 20.43 7.87 36.28 2.90
7739 10426 1.883638 GCTGATTGTCTGACCAAGGCA 60.884 52.381 5.17 2.84 39.29 4.75
7865 10590 3.460672 CTGGGTGTGGCGTCACTGT 62.461 63.158 22.43 0.00 43.94 3.55
7894 10619 1.902508 GTGACAGTGATCAGGAAGGGA 59.097 52.381 0.00 0.00 0.00 4.20
7904 10629 3.680777 TCAGGAAGGGAAAAACCAAGT 57.319 42.857 0.00 0.00 41.20 3.16
7906 10631 3.053245 TCAGGAAGGGAAAAACCAAGTCA 60.053 43.478 0.00 0.00 41.20 3.41
7951 10679 1.466167 CGTGTTGAAATCTGGAGCCAG 59.534 52.381 10.29 10.29 44.86 4.85
8000 10736 2.093658 TCTGGGAAGCGAATGGTACTTC 60.094 50.000 0.00 0.00 39.25 3.01
8015 10751 2.526888 ACTTCTGATCCTCGGGTGTA 57.473 50.000 0.00 0.00 0.00 2.90
8077 10821 4.962836 AGTGGTGCACAGGGCTGC 62.963 66.667 20.43 0.00 45.15 5.25
8100 10844 2.051518 CACTCGAGCTGCCCTCTCT 61.052 63.158 13.61 0.00 38.49 3.10
8110 10854 3.465403 CCCTCTCTGGTGCTCCGG 61.465 72.222 7.35 7.35 41.27 5.14
8224 10972 0.253630 ATAAGGGTCCTGGGGAAGCA 60.254 55.000 0.00 0.00 31.38 3.91
8230 10978 1.248486 GTCCTGGGGAAGCAGTTTTC 58.752 55.000 0.00 0.00 31.38 2.29
8238 10986 3.214328 GGGAAGCAGTTTTCAGTGAAGA 58.786 45.455 5.56 0.00 0.00 2.87
8239 10987 3.632145 GGGAAGCAGTTTTCAGTGAAGAA 59.368 43.478 5.56 1.50 0.00 2.52
8240 10988 4.261363 GGGAAGCAGTTTTCAGTGAAGAAG 60.261 45.833 5.56 0.00 0.00 2.85
8259 11007 5.501156 AGAAGCTTCTATGATCGGGTTTTT 58.499 37.500 27.47 0.00 35.34 1.94
8269 11017 3.195825 TGATCGGGTTTTTGTGTGGTTTT 59.804 39.130 0.00 0.00 0.00 2.43
8292 11040 1.145571 TGTGGGTTTTGAGTAGGGCT 58.854 50.000 0.00 0.00 0.00 5.19
8322 11070 0.103208 CCGAGCTCCATGGAGTACAC 59.897 60.000 36.32 22.76 43.70 2.90
8342 11090 8.910944 AGTACACGTATATACTCCATTTTCAGT 58.089 33.333 11.05 0.00 0.00 3.41
8357 11105 8.194104 TCCATTTTCAGTTTCGAAAAATTCTGA 58.806 29.630 19.37 19.37 45.33 3.27
8358 11106 8.482429 CCATTTTCAGTTTCGAAAAATTCTGAG 58.518 33.333 21.14 13.56 45.33 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.922692 CGCATGTCACCAAACATTGTATTT 59.077 37.500 0.00 0.00 37.78 1.40
2 3 3.755905 TCGCATGTCACCAAACATTGTAT 59.244 39.130 0.00 0.00 37.78 2.29
3 4 3.142174 TCGCATGTCACCAAACATTGTA 58.858 40.909 0.00 0.00 37.78 2.41
5 6 2.702898 TCGCATGTCACCAAACATTG 57.297 45.000 0.00 0.00 37.78 2.82
6 7 3.724508 TTTCGCATGTCACCAAACATT 57.275 38.095 0.00 0.00 37.78 2.71
7 8 3.181482 TGTTTTCGCATGTCACCAAACAT 60.181 39.130 0.00 0.00 40.49 2.71
8 9 2.164422 TGTTTTCGCATGTCACCAAACA 59.836 40.909 0.00 1.14 32.98 2.83
9 10 2.803451 TGTTTTCGCATGTCACCAAAC 58.197 42.857 0.00 0.00 0.00 2.93
10 11 3.724508 ATGTTTTCGCATGTCACCAAA 57.275 38.095 0.00 0.00 0.00 3.28
11 12 3.724508 AATGTTTTCGCATGTCACCAA 57.275 38.095 0.00 0.00 0.00 3.67
12 13 3.724508 AAATGTTTTCGCATGTCACCA 57.275 38.095 0.00 0.00 0.00 4.17
13 14 6.704512 AATAAAATGTTTTCGCATGTCACC 57.295 33.333 0.00 0.00 0.00 4.02
14 15 8.447787 ACTAATAAAATGTTTTCGCATGTCAC 57.552 30.769 0.00 0.00 0.00 3.67
15 16 9.469807 AAACTAATAAAATGTTTTCGCATGTCA 57.530 25.926 0.00 0.00 30.84 3.58
55 56 9.696917 GGTCTTCATTGTATTTTCTGTCAAATT 57.303 29.630 0.00 0.00 0.00 1.82
56 57 8.859090 TGGTCTTCATTGTATTTTCTGTCAAAT 58.141 29.630 0.00 0.00 0.00 2.32
57 58 8.231692 TGGTCTTCATTGTATTTTCTGTCAAA 57.768 30.769 0.00 0.00 0.00 2.69
58 59 7.815840 TGGTCTTCATTGTATTTTCTGTCAA 57.184 32.000 0.00 0.00 0.00 3.18
59 60 7.815840 TTGGTCTTCATTGTATTTTCTGTCA 57.184 32.000 0.00 0.00 0.00 3.58
64 65 9.366216 GGGTTTATTGGTCTTCATTGTATTTTC 57.634 33.333 0.00 0.00 0.00 2.29
65 66 8.032451 CGGGTTTATTGGTCTTCATTGTATTTT 58.968 33.333 0.00 0.00 0.00 1.82
66 67 7.363443 CCGGGTTTATTGGTCTTCATTGTATTT 60.363 37.037 0.00 0.00 0.00 1.40
67 68 6.096282 CCGGGTTTATTGGTCTTCATTGTATT 59.904 38.462 0.00 0.00 0.00 1.89
68 69 5.592688 CCGGGTTTATTGGTCTTCATTGTAT 59.407 40.000 0.00 0.00 0.00 2.29
69 70 4.944930 CCGGGTTTATTGGTCTTCATTGTA 59.055 41.667 0.00 0.00 0.00 2.41
70 71 3.761752 CCGGGTTTATTGGTCTTCATTGT 59.238 43.478 0.00 0.00 0.00 2.71
71 72 4.013728 TCCGGGTTTATTGGTCTTCATTG 58.986 43.478 0.00 0.00 0.00 2.82
72 73 4.014406 GTCCGGGTTTATTGGTCTTCATT 58.986 43.478 0.00 0.00 0.00 2.57
73 74 3.617284 GTCCGGGTTTATTGGTCTTCAT 58.383 45.455 0.00 0.00 0.00 2.57
74 75 2.613474 CGTCCGGGTTTATTGGTCTTCA 60.613 50.000 0.00 0.00 0.00 3.02
75 76 2.004733 CGTCCGGGTTTATTGGTCTTC 58.995 52.381 0.00 0.00 0.00 2.87
76 77 1.339342 CCGTCCGGGTTTATTGGTCTT 60.339 52.381 0.00 0.00 0.00 3.01
77 78 0.251073 CCGTCCGGGTTTATTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
78 79 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
79 80 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
80 81 0.251073 ACTCCGTCCGGGTTTATTGG 59.749 55.000 0.00 0.00 37.00 3.16
81 82 2.103537 AACTCCGTCCGGGTTTATTG 57.896 50.000 0.00 0.00 37.00 1.90
82 83 2.833943 ACTAACTCCGTCCGGGTTTATT 59.166 45.455 14.67 0.00 37.00 1.40
83 84 2.460669 ACTAACTCCGTCCGGGTTTAT 58.539 47.619 14.67 4.78 37.00 1.40
84 85 1.923356 ACTAACTCCGTCCGGGTTTA 58.077 50.000 14.67 8.21 37.00 2.01
85 86 1.546029 GTACTAACTCCGTCCGGGTTT 59.454 52.381 14.67 7.61 37.00 3.27
86 87 1.177401 GTACTAACTCCGTCCGGGTT 58.823 55.000 0.00 11.01 37.00 4.11
87 88 0.038166 TGTACTAACTCCGTCCGGGT 59.962 55.000 0.00 0.02 37.00 5.28
88 89 1.133790 CTTGTACTAACTCCGTCCGGG 59.866 57.143 0.00 0.00 35.59 5.73
89 90 1.468736 GCTTGTACTAACTCCGTCCGG 60.469 57.143 0.00 0.00 0.00 5.14
90 91 1.468736 GGCTTGTACTAACTCCGTCCG 60.469 57.143 0.00 0.00 0.00 4.79
91 92 1.134877 GGGCTTGTACTAACTCCGTCC 60.135 57.143 0.00 0.00 0.00 4.79
92 93 1.468736 CGGGCTTGTACTAACTCCGTC 60.469 57.143 0.00 0.00 0.00 4.79
93 94 0.529378 CGGGCTTGTACTAACTCCGT 59.471 55.000 0.00 0.00 0.00 4.69
94 95 0.529378 ACGGGCTTGTACTAACTCCG 59.471 55.000 11.50 11.50 41.45 4.63
95 96 1.547372 TGACGGGCTTGTACTAACTCC 59.453 52.381 0.00 0.00 0.00 3.85
96 97 2.490903 TCTGACGGGCTTGTACTAACTC 59.509 50.000 0.00 0.00 0.00 3.01
97 98 2.492484 CTCTGACGGGCTTGTACTAACT 59.508 50.000 0.00 0.00 0.00 2.24
98 99 2.877335 CTCTGACGGGCTTGTACTAAC 58.123 52.381 0.00 0.00 0.00 2.34
99 100 1.203994 GCTCTGACGGGCTTGTACTAA 59.796 52.381 0.00 0.00 0.00 2.24
100 101 0.815734 GCTCTGACGGGCTTGTACTA 59.184 55.000 0.00 0.00 0.00 1.82
101 102 1.185618 TGCTCTGACGGGCTTGTACT 61.186 55.000 0.00 0.00 0.00 2.73
102 103 0.108138 ATGCTCTGACGGGCTTGTAC 60.108 55.000 0.00 0.00 0.00 2.90
103 104 0.613260 AATGCTCTGACGGGCTTGTA 59.387 50.000 0.00 0.00 0.00 2.41
104 105 0.957395 CAATGCTCTGACGGGCTTGT 60.957 55.000 0.00 0.00 0.00 3.16
105 106 1.651240 CCAATGCTCTGACGGGCTTG 61.651 60.000 0.00 0.00 0.00 4.01
106 107 1.377725 CCAATGCTCTGACGGGCTT 60.378 57.895 0.00 0.00 0.00 4.35
107 108 2.270205 CCAATGCTCTGACGGGCT 59.730 61.111 0.00 0.00 0.00 5.19
108 109 3.512516 GCCAATGCTCTGACGGGC 61.513 66.667 0.00 0.00 33.53 6.13
109 110 2.825836 GGCCAATGCTCTGACGGG 60.826 66.667 0.00 0.00 37.74 5.28
110 111 3.197790 CGGCCAATGCTCTGACGG 61.198 66.667 2.24 0.00 37.74 4.79
111 112 3.869272 GCGGCCAATGCTCTGACG 61.869 66.667 2.24 0.00 37.74 4.35
112 113 3.869272 CGCGGCCAATGCTCTGAC 61.869 66.667 2.24 0.00 37.74 3.51
125 126 4.659874 GCCGAAACACACACGCGG 62.660 66.667 12.47 1.27 44.47 6.46
162 166 6.085573 TCGATGTTCTTACGTGTAATCGAAA 58.914 36.000 14.05 0.00 32.27 3.46
209 214 7.491372 GTGATCTTTCCTAACGTTGATGATGTA 59.509 37.037 11.99 0.00 0.00 2.29
210 215 6.313905 GTGATCTTTCCTAACGTTGATGATGT 59.686 38.462 11.99 0.00 0.00 3.06
270 275 1.544691 TCCTTGTAGCGGAGTCAACTC 59.455 52.381 1.37 1.37 42.14 3.01
351 361 0.250295 CAGTGGAGGAAGCGTGGAAA 60.250 55.000 0.00 0.00 0.00 3.13
373 386 5.173131 CACCGCAAGATTGTTTTGAGTAAAC 59.827 40.000 0.00 0.00 43.07 2.01
390 403 3.185365 CGCTCGCATACACCGCAA 61.185 61.111 0.00 0.00 0.00 4.85
439 452 5.376625 AGACCACAATTCTGTAGCTTCAAA 58.623 37.500 0.00 0.00 33.22 2.69
449 465 2.227388 GGAGTGCAAGACCACAATTCTG 59.773 50.000 0.00 0.00 38.18 3.02
451 467 2.227388 CAGGAGTGCAAGACCACAATTC 59.773 50.000 0.00 0.00 38.18 2.17
454 470 0.179020 CCAGGAGTGCAAGACCACAA 60.179 55.000 0.00 0.00 38.18 3.33
470 486 9.859427 CAGCTCTATTAAGATAGAAGAATCCAG 57.141 37.037 0.00 0.00 42.71 3.86
505 521 0.323629 ATCTTTGAGGGAAACGCGGA 59.676 50.000 12.47 0.00 0.00 5.54
582 598 7.332182 CGGAGCTCTTCTTTTTGAAATAGTAGT 59.668 37.037 14.64 0.00 33.79 2.73
583 599 7.680062 CGGAGCTCTTCTTTTTGAAATAGTAG 58.320 38.462 14.64 0.00 33.79 2.57
607 623 1.507141 GGTCCACACTCCAACTTGCG 61.507 60.000 0.00 0.00 0.00 4.85
626 651 3.257561 CAGGCAAGGCGATCGACG 61.258 66.667 21.57 5.21 45.66 5.12
634 659 0.386838 GTTCATATGGCAGGCAAGGC 59.613 55.000 0.00 0.00 0.00 4.35
642 667 3.466836 GGTTCATCTCGTTCATATGGCA 58.533 45.455 2.13 0.00 0.00 4.92
745 958 6.503589 AGTGACTGAAGTACTTAGTGCTAG 57.496 41.667 8.42 1.19 0.00 3.42
749 962 7.772332 ACAAAAGTGACTGAAGTACTTAGTG 57.228 36.000 8.42 4.40 33.82 2.74
750 963 9.880157 TTTACAAAAGTGACTGAAGTACTTAGT 57.120 29.630 8.42 11.98 33.82 2.24
784 997 2.431683 GACCCCAGAAGCACAGCA 59.568 61.111 0.00 0.00 0.00 4.41
885 1104 0.108424 CTCCTGCTCCTCGGAAACTG 60.108 60.000 0.00 0.00 0.00 3.16
890 1109 3.723097 ATCGCTCCTGCTCCTCGGA 62.723 63.158 0.00 0.00 36.97 4.55
892 1111 2.334653 GATCGCTCCTGCTCCTCG 59.665 66.667 0.00 0.00 36.97 4.63
893 1112 2.733945 GGATCGCTCCTGCTCCTC 59.266 66.667 0.00 0.00 38.65 3.71
894 1113 2.841988 GGGATCGCTCCTGCTCCT 60.842 66.667 5.10 0.00 41.74 3.69
895 1114 4.292178 CGGGATCGCTCCTGCTCC 62.292 72.222 5.10 0.00 41.05 4.70
972 1214 2.935481 CCCAGCCTCTGTCCCCAA 60.935 66.667 0.00 0.00 0.00 4.12
975 1217 4.106925 CTGCCCAGCCTCTGTCCC 62.107 72.222 0.00 0.00 0.00 4.46
1104 1355 1.305718 GACCTCCACCAGCTCCTCT 60.306 63.158 0.00 0.00 0.00 3.69
1128 1379 2.596338 TCGTCGTCCTGCAGGTCA 60.596 61.111 31.58 11.73 36.34 4.02
1318 1572 3.117171 CTCCTGCGACAGCTGCAC 61.117 66.667 15.27 7.56 45.42 4.57
1657 1912 2.852075 GGGCGGGATGATGGGGTA 60.852 66.667 0.00 0.00 0.00 3.69
1677 1932 1.207791 GAGCAGAGGGAAATGGAGGA 58.792 55.000 0.00 0.00 0.00 3.71
1678 1933 0.179062 CGAGCAGAGGGAAATGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
1688 1943 0.030908 GGATACGGTTCGAGCAGAGG 59.969 60.000 6.39 0.00 0.00 3.69
1754 2017 1.448540 CAGCGCGAACTCCTTGGAT 60.449 57.895 12.10 0.00 0.00 3.41
1802 2065 0.969149 TCGTGTCCAGCTTCATCTGT 59.031 50.000 0.00 0.00 32.32 3.41
1907 2170 7.902920 ACAGGCTTGATAATGGTGAATTAAT 57.097 32.000 1.40 0.00 34.41 1.40
1908 2171 8.815565 TTACAGGCTTGATAATGGTGAATTAA 57.184 30.769 1.40 0.00 34.41 1.40
1927 2227 5.579511 ACGGACAGTAAAATCGAATTACAGG 59.420 40.000 20.17 15.46 36.04 4.00
1949 2249 1.127951 GTTGTCACGGAATGGCTAACG 59.872 52.381 0.00 0.00 32.41 3.18
1960 2261 2.490328 AGCAAAACATGTTGTCACGG 57.510 45.000 12.82 0.00 0.00 4.94
1964 2265 5.108517 TGAAAGGAAGCAAAACATGTTGTC 58.891 37.500 12.82 4.44 0.00 3.18
1968 2269 6.822676 TGAAATTGAAAGGAAGCAAAACATGT 59.177 30.769 0.00 0.00 0.00 3.21
1969 2270 7.249186 TGAAATTGAAAGGAAGCAAAACATG 57.751 32.000 0.00 0.00 0.00 3.21
1971 2272 6.093357 GGTTGAAATTGAAAGGAAGCAAAACA 59.907 34.615 0.00 0.00 0.00 2.83
1972 2273 6.093357 TGGTTGAAATTGAAAGGAAGCAAAAC 59.907 34.615 0.00 0.00 0.00 2.43
1981 2282 3.244181 CCACCCTGGTTGAAATTGAAAGG 60.244 47.826 0.00 0.00 31.35 3.11
1995 2296 1.597742 CGCATTCTTATCCACCCTGG 58.402 55.000 0.00 0.00 39.43 4.45
2026 2327 4.649705 TTCACCTCCGCCTCCCCA 62.650 66.667 0.00 0.00 0.00 4.96
2142 2443 6.183360 TGGTGTCCTCAAATAGCAATGTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
2143 2444 5.304101 TGGTGTCCTCAAATAGCAATGTTTT 59.696 36.000 0.00 0.00 0.00 2.43
2144 2445 4.832266 TGGTGTCCTCAAATAGCAATGTTT 59.168 37.500 0.00 0.00 0.00 2.83
2145 2446 4.406456 TGGTGTCCTCAAATAGCAATGTT 58.594 39.130 0.00 0.00 0.00 2.71
2146 2447 4.032960 TGGTGTCCTCAAATAGCAATGT 57.967 40.909 0.00 0.00 0.00 2.71
2147 2448 5.389859 TTTGGTGTCCTCAAATAGCAATG 57.610 39.130 0.00 0.00 31.61 2.82
2148 2449 5.954150 AGATTTGGTGTCCTCAAATAGCAAT 59.046 36.000 0.00 0.00 42.68 3.56
2149 2450 5.183713 CAGATTTGGTGTCCTCAAATAGCAA 59.816 40.000 0.00 0.00 42.68 3.91
2150 2451 4.701651 CAGATTTGGTGTCCTCAAATAGCA 59.298 41.667 0.00 0.00 42.68 3.49
2151 2452 4.943705 TCAGATTTGGTGTCCTCAAATAGC 59.056 41.667 0.00 0.00 42.68 2.97
2152 2453 6.825213 TGATCAGATTTGGTGTCCTCAAATAG 59.175 38.462 0.00 0.00 42.68 1.73
2153 2454 6.720309 TGATCAGATTTGGTGTCCTCAAATA 58.280 36.000 0.00 0.00 42.68 1.40
2154 2455 5.573219 TGATCAGATTTGGTGTCCTCAAAT 58.427 37.500 0.00 0.00 44.53 2.32
2155 2456 4.984295 TGATCAGATTTGGTGTCCTCAAA 58.016 39.130 0.00 0.00 38.30 2.69
2196 2497 2.933906 TCGACCAAATATTTGAGCCGTC 59.066 45.455 26.32 21.57 40.55 4.79
2197 2498 2.676342 GTCGACCAAATATTTGAGCCGT 59.324 45.455 26.32 16.42 40.55 5.68
2198 2499 2.285602 CGTCGACCAAATATTTGAGCCG 60.286 50.000 26.32 22.86 40.55 5.52
2278 2580 4.171296 TGGAGAATGCCATACGGTACGG 62.171 54.545 0.00 0.00 45.83 4.02
2306 2608 7.394016 TCTGGAAGCACAGAGTGATAATTAAA 58.606 34.615 0.58 0.00 42.26 1.52
2320 2622 1.902508 CCTTAGTCCTCTGGAAGCACA 59.097 52.381 0.00 0.00 31.38 4.57
2384 2687 2.990740 TAAAACCCCTCCTTGCATGT 57.009 45.000 0.00 0.00 0.00 3.21
2434 2737 3.183801 ACTCCACCCCGGTTCTTAATAA 58.816 45.455 0.00 0.00 35.57 1.40
2446 2749 1.134877 GCTTCTTACGTACTCCACCCC 60.135 57.143 0.00 0.00 0.00 4.95
2450 2753 2.230508 CCACAGCTTCTTACGTACTCCA 59.769 50.000 0.00 0.00 0.00 3.86
2452 2755 3.057736 TGACCACAGCTTCTTACGTACTC 60.058 47.826 0.00 0.00 0.00 2.59
2477 2787 2.812591 GCTCACCGACTCCGATTAGATA 59.187 50.000 0.00 0.00 38.22 1.98
2539 2850 2.085343 AAAGCTGGCAGGTGGGATGT 62.085 55.000 21.35 0.00 0.00 3.06
2590 2901 2.991540 AAAGCTGCCCGGCCTTTC 60.992 61.111 7.03 0.00 0.00 2.62
2608 2919 3.184581 CCTCACACAAAGCGTTCTAGAAC 59.815 47.826 23.25 23.25 37.92 3.01
2632 2965 4.918201 GGCCGGAATGCCCTCTCG 62.918 72.222 5.05 0.00 46.11 4.04
2648 2981 4.473520 CACCTACTGCCTGGCCGG 62.474 72.222 17.53 13.38 0.00 6.13
2649 2982 3.376935 CTCACCTACTGCCTGGCCG 62.377 68.421 17.53 12.95 0.00 6.13
2650 2983 2.586792 CTCACCTACTGCCTGGCC 59.413 66.667 17.53 0.00 0.00 5.36
2651 2984 2.586792 CCTCACCTACTGCCTGGC 59.413 66.667 12.87 12.87 0.00 4.85
2698 3031 1.299014 CTGAGTCGAGCGGATCAGC 60.299 63.158 10.10 10.10 33.41 4.26
2809 3167 6.546428 TGTAACATTTTCCTTCCAAAACCA 57.454 33.333 0.00 0.00 0.00 3.67
2811 3169 8.831715 ATGATGTAACATTTTCCTTCCAAAAC 57.168 30.769 0.00 0.00 0.00 2.43
2816 3174 9.736023 GAACATATGATGTAACATTTTCCTTCC 57.264 33.333 10.38 0.00 44.07 3.46
2817 3175 9.736023 GGAACATATGATGTAACATTTTCCTTC 57.264 33.333 10.38 0.00 44.07 3.46
2818 3176 8.695456 GGGAACATATGATGTAACATTTTCCTT 58.305 33.333 10.38 0.00 44.07 3.36
2819 3177 8.061304 AGGGAACATATGATGTAACATTTTCCT 58.939 33.333 10.38 0.28 44.07 3.36
2837 3195 3.243359 TCTGCCAAAGAAAGGGAACAT 57.757 42.857 0.00 0.00 29.54 2.71
3023 3441 2.996168 AAGTGGTCGCTGACAGGTGC 62.996 60.000 4.26 0.00 33.68 5.01
3063 3484 2.412089 CCACAAGCTAAACGAGTACAGC 59.588 50.000 0.00 0.00 0.00 4.40
3079 3500 3.422303 GCGCACGCATCTCCACAA 61.422 61.111 10.65 0.00 41.49 3.33
3148 3574 4.381411 GTCAACTGCTCCTGAAGTAAACT 58.619 43.478 0.00 0.00 30.26 2.66
3209 3661 7.959721 TCTACTACCATATTTTATACCCCTGCT 59.040 37.037 0.00 0.00 0.00 4.24
3311 4643 2.004733 ACTACTGTTTATTTCGCCGGC 58.995 47.619 19.07 19.07 0.00 6.13
3328 4660 3.328343 TGCCAAGTTTAAGGGTGCTACTA 59.672 43.478 0.00 0.00 0.00 1.82
3398 4733 0.541764 GTTGGGGCCCTTCAATGTGA 60.542 55.000 25.93 0.00 0.00 3.58
3430 4765 3.700539 TCCATCGATTTCAATGGTGCATT 59.299 39.130 0.00 0.00 42.57 3.56
3518 4857 2.433838 CTGGTCCACAGCTGCTCG 60.434 66.667 15.27 2.10 40.97 5.03
3541 5977 6.976925 GCAAAACAGAAATTGATGCTAGCTAT 59.023 34.615 17.23 7.81 34.21 2.97
3592 6028 1.912371 GCAACCGGCACTGAACTAGC 61.912 60.000 0.00 0.00 43.97 3.42
3593 6029 2.162716 GCAACCGGCACTGAACTAG 58.837 57.895 0.00 0.00 43.97 2.57
3639 6075 2.613506 GGTTCGGTGGCAACGGAAG 61.614 63.158 26.41 0.00 43.74 3.46
3640 6076 2.592287 GGTTCGGTGGCAACGGAA 60.592 61.111 26.41 14.92 41.70 4.30
3647 6083 1.963190 GAACGATTCGGTTCGGTGGC 61.963 60.000 11.29 0.00 39.61 5.01
3717 6153 0.683504 TAGACCAGCTCGGAAGGGAC 60.684 60.000 8.91 0.00 38.63 4.46
3792 6228 8.762481 AAAAACAAAGGTAGAGAACAGGTTAT 57.238 30.769 0.00 0.00 0.00 1.89
3840 6303 2.813754 TGACCAAGCATAAGTTCAGCAC 59.186 45.455 2.77 0.00 0.00 4.40
3841 6304 2.813754 GTGACCAAGCATAAGTTCAGCA 59.186 45.455 2.77 0.00 0.00 4.41
3842 6305 3.077359 AGTGACCAAGCATAAGTTCAGC 58.923 45.455 0.00 0.00 0.00 4.26
3843 6306 4.573900 AGAGTGACCAAGCATAAGTTCAG 58.426 43.478 0.00 0.00 0.00 3.02
3844 6307 4.623932 AGAGTGACCAAGCATAAGTTCA 57.376 40.909 0.00 0.00 0.00 3.18
3845 6308 4.757149 ACAAGAGTGACCAAGCATAAGTTC 59.243 41.667 0.00 0.00 0.00 3.01
3846 6309 4.718961 ACAAGAGTGACCAAGCATAAGTT 58.281 39.130 0.00 0.00 0.00 2.66
3847 6310 4.357918 ACAAGAGTGACCAAGCATAAGT 57.642 40.909 0.00 0.00 0.00 2.24
3848 6311 5.349817 CAGTACAAGAGTGACCAAGCATAAG 59.650 44.000 0.00 0.00 0.00 1.73
3849 6312 5.011635 TCAGTACAAGAGTGACCAAGCATAA 59.988 40.000 0.00 0.00 32.22 1.90
3850 6313 4.526650 TCAGTACAAGAGTGACCAAGCATA 59.473 41.667 0.00 0.00 32.22 3.14
3851 6314 3.324846 TCAGTACAAGAGTGACCAAGCAT 59.675 43.478 0.00 0.00 32.22 3.79
3852 6315 2.698274 TCAGTACAAGAGTGACCAAGCA 59.302 45.455 0.00 0.00 32.22 3.91
3853 6316 3.386768 TCAGTACAAGAGTGACCAAGC 57.613 47.619 0.00 0.00 32.22 4.01
3854 6317 4.950050 AGTTCAGTACAAGAGTGACCAAG 58.050 43.478 0.00 0.00 37.23 3.61
3855 6318 5.353394 AAGTTCAGTACAAGAGTGACCAA 57.647 39.130 0.00 0.00 37.23 3.67
3856 6319 6.455647 CATAAGTTCAGTACAAGAGTGACCA 58.544 40.000 0.00 0.00 37.23 4.02
3857 6320 5.348997 GCATAAGTTCAGTACAAGAGTGACC 59.651 44.000 0.00 0.00 37.23 4.02
3858 6321 6.159988 AGCATAAGTTCAGTACAAGAGTGAC 58.840 40.000 0.00 0.00 37.23 3.67
3859 6322 6.346477 AGCATAAGTTCAGTACAAGAGTGA 57.654 37.500 0.00 0.00 35.59 3.41
3860 6323 6.128445 CCAAGCATAAGTTCAGTACAAGAGTG 60.128 42.308 0.00 0.00 0.00 3.51
3861 6324 5.934625 CCAAGCATAAGTTCAGTACAAGAGT 59.065 40.000 0.00 0.00 0.00 3.24
3862 6325 5.934625 ACCAAGCATAAGTTCAGTACAAGAG 59.065 40.000 0.00 0.00 0.00 2.85
3863 6326 5.865085 ACCAAGCATAAGTTCAGTACAAGA 58.135 37.500 0.00 0.00 0.00 3.02
3864 6327 5.163953 CGACCAAGCATAAGTTCAGTACAAG 60.164 44.000 0.00 0.00 0.00 3.16
3865 6328 4.688879 CGACCAAGCATAAGTTCAGTACAA 59.311 41.667 0.00 0.00 0.00 2.41
3866 6329 4.242475 CGACCAAGCATAAGTTCAGTACA 58.758 43.478 0.00 0.00 0.00 2.90
3927 6390 9.979578 TGAACAAATTAATACTTGCATTCTTGT 57.020 25.926 0.00 0.00 0.00 3.16
3929 6392 9.979578 TGTGAACAAATTAATACTTGCATTCTT 57.020 25.926 0.00 0.00 0.00 2.52
3930 6393 9.630098 CTGTGAACAAATTAATACTTGCATTCT 57.370 29.630 0.00 0.00 0.00 2.40
3931 6394 8.863049 CCTGTGAACAAATTAATACTTGCATTC 58.137 33.333 0.00 0.21 0.00 2.67
3932 6395 7.331687 GCCTGTGAACAAATTAATACTTGCATT 59.668 33.333 0.00 0.00 0.00 3.56
3933 6396 6.813152 GCCTGTGAACAAATTAATACTTGCAT 59.187 34.615 0.00 0.00 0.00 3.96
3934 6397 6.015519 AGCCTGTGAACAAATTAATACTTGCA 60.016 34.615 0.67 0.00 0.00 4.08
3935 6398 6.389906 AGCCTGTGAACAAATTAATACTTGC 58.610 36.000 0.67 0.00 0.00 4.01
3936 6399 8.816640 AAAGCCTGTGAACAAATTAATACTTG 57.183 30.769 0.00 0.00 0.00 3.16
3965 6428 8.963130 CAAGCGACAGTTATCAATTTGTAAAAA 58.037 29.630 0.00 0.00 0.00 1.94
3977 6440 5.374898 GTTCAAGTTCAAGCGACAGTTATC 58.625 41.667 0.00 0.00 0.00 1.75
3987 6450 3.733443 ACCATTGGTTCAAGTTCAAGC 57.267 42.857 1.37 0.00 27.29 4.01
4046 6509 3.068590 TGCCAAAGCTGAAAGGAGAAAAG 59.931 43.478 0.00 0.00 40.80 2.27
4381 6846 0.835941 ACACTGGCAGGAGGATGATC 59.164 55.000 20.34 0.00 0.00 2.92
4396 6861 0.536233 TAATGGTGTTGCGGCACACT 60.536 50.000 24.34 13.99 45.56 3.55
4530 6996 4.265073 ACTTCCAAGGTGATTGCACTATC 58.735 43.478 0.00 0.00 44.52 2.08
4611 7077 6.645306 AGGTCTCTCTAAGTTGGATTTAAGC 58.355 40.000 0.00 0.00 0.00 3.09
4785 7421 1.685224 GAGGTGGTTCCCTGCATGA 59.315 57.895 0.00 0.00 34.03 3.07
4803 7439 0.315869 GCCGTGGAAAATCGCATACG 60.316 55.000 0.00 0.00 42.01 3.06
4848 7484 5.889289 CCCGAAATAAATTCCCAAAGGAGTA 59.111 40.000 0.00 0.00 45.19 2.59
4849 7485 4.709886 CCCGAAATAAATTCCCAAAGGAGT 59.290 41.667 0.00 0.00 45.19 3.85
4941 7577 8.749499 GCTAAAGTAAAAGCAATTATCATGCAG 58.251 33.333 0.00 0.00 46.22 4.41
5345 7982 6.801539 TTAGTACAAGGCACAAAGAATCAG 57.198 37.500 0.00 0.00 0.00 2.90
5513 8156 0.310854 GGCCACAAGTGTACAGCAAC 59.689 55.000 0.00 0.00 0.00 4.17
5598 8241 2.483106 CCTTCTGCAGACATGAAGTGTG 59.517 50.000 18.03 0.00 42.36 3.82
5848 8491 5.032220 GCACAAATGTACCCGCTAAAATAC 58.968 41.667 0.00 0.00 0.00 1.89
5864 8507 2.645838 AGTGTCCACAGAGCACAAAT 57.354 45.000 0.00 0.00 0.00 2.32
6265 8910 1.072489 TGTGGCTTATTCCGACCAACA 59.928 47.619 0.00 0.00 33.03 3.33
6610 9255 0.864455 GAAGCATAGTGATGAGCGCC 59.136 55.000 2.29 0.00 34.73 6.53
6634 9279 1.479323 CCATTCTTGGCATGGTTCAGG 59.521 52.381 0.00 0.00 37.07 3.86
6712 9357 4.318332 TGCATTCACTTTACAGACTGAGG 58.682 43.478 10.08 0.00 0.00 3.86
6844 9489 1.335872 GCAAAATGTGTCCGAACCTGG 60.336 52.381 0.00 0.00 0.00 4.45
7046 9692 2.153247 GCATATCAACGTACTAGTGCGC 59.847 50.000 29.69 9.94 42.39 6.09
7076 9722 6.722590 TCTTCCTTGTGTAGTACATCCAACTA 59.277 38.462 6.21 0.00 39.48 2.24
7097 9743 8.587952 TTTTAAAAATTTGCCTAGCAGTCTTC 57.412 30.769 0.00 0.00 40.61 2.87
7240 9889 5.221641 ACAGTAGAAGACACCTGTATGCAAA 60.222 40.000 0.00 0.00 36.44 3.68
7449 10098 1.201429 TCTTCACCTTGGCCTCTCCC 61.201 60.000 3.32 0.00 0.00 4.30
7473 10122 2.284190 GTCCAGCAAGAAGTCTATGGC 58.716 52.381 0.00 0.00 0.00 4.40
7536 10197 3.434024 CCATCATGGAAGCCACATGTAGA 60.434 47.826 0.00 0.00 44.57 2.59
7548 10209 5.722263 CATGTTGTAAAAGCCATCATGGAA 58.278 37.500 8.30 0.00 40.96 3.53
7578 10239 3.639094 CTCTGTACAATCGAATCCCCTCT 59.361 47.826 0.00 0.00 0.00 3.69
7591 10267 3.321111 GTCTTCAGGTGGTCTCTGTACAA 59.679 47.826 0.00 0.00 34.15 2.41
7613 10289 4.491234 ACTATATTCAGGAGAAGCGTCG 57.509 45.455 0.00 0.00 37.14 5.12
7616 10292 4.039245 TCCCAACTATATTCAGGAGAAGCG 59.961 45.833 0.00 0.00 37.14 4.68
7657 10343 3.240302 CGGTTCCCTTCCTATGTCCTAT 58.760 50.000 0.00 0.00 0.00 2.57
7774 10461 9.680315 TTCACTTTTCTTTCGTTTCTTTTTGTA 57.320 25.926 0.00 0.00 0.00 2.41
7776 10463 9.516091 CTTTCACTTTTCTTTCGTTTCTTTTTG 57.484 29.630 0.00 0.00 0.00 2.44
7781 10468 9.471084 TTTTTCTTTCACTTTTCTTTCGTTTCT 57.529 25.926 0.00 0.00 0.00 2.52
7825 10512 2.886523 CCTTGAACCAATCAGCTCACAA 59.113 45.455 0.00 0.00 39.77 3.33
7827 10514 1.200948 GCCTTGAACCAATCAGCTCAC 59.799 52.381 0.00 0.00 39.77 3.51
7828 10515 1.074405 AGCCTTGAACCAATCAGCTCA 59.926 47.619 0.00 0.00 35.31 4.26
7830 10517 1.542492 CAGCCTTGAACCAATCAGCT 58.458 50.000 0.00 0.00 39.43 4.24
7862 10587 1.596260 CACTGTCACAGCTCACAACAG 59.404 52.381 4.13 11.54 42.33 3.16
7865 10590 2.102925 TGATCACTGTCACAGCTCACAA 59.897 45.455 4.13 0.00 34.37 3.33
7872 10597 2.354503 CCCTTCCTGATCACTGTCACAG 60.355 54.545 2.22 2.22 37.52 3.66
7894 10619 6.160576 ACAGCAATACATGACTTGGTTTTT 57.839 33.333 0.00 0.00 31.15 1.94
7904 10629 9.948964 AGCATTATTAGATACAGCAATACATGA 57.051 29.630 0.00 0.00 0.00 3.07
7906 10631 9.091784 CGAGCATTATTAGATACAGCAATACAT 57.908 33.333 0.00 0.00 0.00 2.29
7951 10679 1.131883 GTGCAGGTGAGTGAATCATGC 59.868 52.381 1.91 1.91 42.07 4.06
8000 10736 0.747255 CTGGTACACCCGAGGATCAG 59.253 60.000 0.00 0.00 35.15 2.90
8015 10751 3.907027 CTGGACCCCGGACTCTGGT 62.907 68.421 0.73 0.00 34.33 4.00
8084 10828 2.784356 CCAGAGAGGGCAGCTCGAG 61.784 68.421 8.45 8.45 37.46 4.04
8208 10956 2.612115 CTGCTTCCCCAGGACCCT 60.612 66.667 0.00 0.00 0.00 4.34
8214 10962 1.610522 CACTGAAAACTGCTTCCCCAG 59.389 52.381 0.00 0.00 38.78 4.45
8224 10972 7.220030 TCATAGAAGCTTCTTCACTGAAAACT 58.780 34.615 32.70 7.71 38.70 2.66
8230 10978 4.744137 CCGATCATAGAAGCTTCTTCACTG 59.256 45.833 32.70 22.70 38.70 3.66
8238 10986 5.010282 ACAAAAACCCGATCATAGAAGCTT 58.990 37.500 0.00 0.00 0.00 3.74
8239 10987 4.396166 CACAAAAACCCGATCATAGAAGCT 59.604 41.667 0.00 0.00 0.00 3.74
8240 10988 4.156008 ACACAAAAACCCGATCATAGAAGC 59.844 41.667 0.00 0.00 0.00 3.86
8269 11017 4.083565 GCCCTACTCAAAACCCACATAAA 58.916 43.478 0.00 0.00 0.00 1.40
8299 11047 1.040339 ACTCCATGGAGCTCGGTCTC 61.040 60.000 36.78 0.00 45.54 3.36
8300 11048 0.259065 TACTCCATGGAGCTCGGTCT 59.741 55.000 36.78 20.50 45.54 3.85
8301 11049 0.386113 GTACTCCATGGAGCTCGGTC 59.614 60.000 36.78 18.64 45.54 4.79
8322 11070 8.570096 TCGAAACTGAAAATGGAGTATATACG 57.430 34.615 7.23 0.00 0.00 3.06
8334 11082 9.801873 TTCTCAGAATTTTTCGAAACTGAAAAT 57.198 25.926 21.98 12.54 44.68 1.82
8336 11084 9.632807 TTTTCTCAGAATTTTTCGAAACTGAAA 57.367 25.926 21.98 17.24 36.12 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.