Multiple sequence alignment - TraesCS3B01G313200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G313200 chr3B 100.000 1731 0 0 834 2564 503033454 503035184 0.000000e+00 3197.0
1 TraesCS3B01G313200 chr3B 88.253 1013 69 16 860 1847 107955432 107956419 0.000000e+00 1166.0
2 TraesCS3B01G313200 chr3B 94.655 580 31 0 1985 2564 503057140 503057719 0.000000e+00 900.0
3 TraesCS3B01G313200 chr3B 92.069 580 46 0 1985 2564 431305524 431304945 0.000000e+00 817.0
4 TraesCS3B01G313200 chr3B 92.069 580 46 0 1985 2564 439411072 439411651 0.000000e+00 817.0
5 TraesCS3B01G313200 chr3B 100.000 186 0 0 1 186 503032621 503032806 6.790000e-91 344.0
6 TraesCS3B01G313200 chr3B 82.069 145 11 3 1 141 59941066 59941199 2.700000e-20 110.0
7 TraesCS3B01G313200 chr3B 87.097 93 6 4 1 87 794530838 794530930 1.620000e-17 100.0
8 TraesCS3B01G313200 chr3B 86.022 93 7 3 1 87 794531563 794531655 7.550000e-16 95.3
9 TraesCS3B01G313200 chr3B 93.548 62 4 0 862 923 503033520 503033581 2.720000e-15 93.5
10 TraesCS3B01G313200 chr7B 90.999 1011 54 12 862 1847 518467249 518466251 0.000000e+00 1328.0
11 TraesCS3B01G313200 chr7B 88.391 982 64 18 884 1848 123403226 123402278 0.000000e+00 1136.0
12 TraesCS3B01G313200 chr7B 91.271 653 40 6 936 1571 713627372 713628024 0.000000e+00 874.0
13 TraesCS3B01G313200 chr7B 85.246 122 12 3 1 118 201004552 201004433 1.250000e-23 121.0
14 TraesCS3B01G313200 chr5D 91.230 992 52 7 882 1847 434724330 434725312 0.000000e+00 1317.0
15 TraesCS3B01G313200 chr5D 85.227 88 9 2 1 84 287811961 287811874 1.260000e-13 87.9
16 TraesCS3B01G313200 chr5B 90.909 1001 58 17 860 1845 639140064 639141046 0.000000e+00 1314.0
17 TraesCS3B01G313200 chr1D 91.004 956 51 6 902 1845 422066404 422065472 0.000000e+00 1256.0
18 TraesCS3B01G313200 chr1D 89.751 1005 52 9 860 1855 13228861 13227899 0.000000e+00 1238.0
19 TraesCS3B01G313200 chr3A 90.556 953 59 11 915 1843 744560838 744559893 0.000000e+00 1232.0
20 TraesCS3B01G313200 chr3A 91.331 496 39 2 915 1406 744553314 744553809 0.000000e+00 675.0
21 TraesCS3B01G313200 chr3A 87.333 150 12 4 1 143 9515626 9515775 5.680000e-37 165.0
22 TraesCS3B01G313200 chr2B 91.295 919 54 6 952 1845 212305525 212306442 0.000000e+00 1230.0
23 TraesCS3B01G313200 chr2B 92.586 580 43 0 1985 2564 182280620 182281199 0.000000e+00 833.0
24 TraesCS3B01G313200 chr2B 92.586 580 42 1 1985 2564 228264896 228264318 0.000000e+00 832.0
25 TraesCS3B01G313200 chr2B 92.427 581 42 2 1985 2564 113090453 113091032 0.000000e+00 828.0
26 TraesCS3B01G313200 chr2B 92.424 66 5 0 861 926 74213887 74213952 7.550000e-16 95.3
27 TraesCS3B01G313200 chr6B 88.845 1022 73 17 860 1848 114517052 114516039 0.000000e+00 1218.0
28 TraesCS3B01G313200 chr5A 88.878 998 83 15 839 1812 131800431 131799438 0.000000e+00 1203.0
29 TraesCS3B01G313200 chr7A 89.069 924 72 12 938 1847 515967123 515968031 0.000000e+00 1120.0
30 TraesCS3B01G313200 chr2D 89.274 895 51 11 969 1847 264816797 264817662 0.000000e+00 1079.0
31 TraesCS3B01G313200 chr4B 92.599 581 43 0 1984 2564 164868280 164868860 0.000000e+00 835.0
32 TraesCS3B01G313200 chr4B 92.083 581 46 0 1984 2564 164890807 164891387 0.000000e+00 819.0
33 TraesCS3B01G313200 chr1B 91.966 585 47 0 1980 2564 112962323 112962907 0.000000e+00 821.0
34 TraesCS3B01G313200 chr2A 82.883 222 27 9 864 1085 702115488 702115698 3.370000e-44 189.0
35 TraesCS3B01G313200 chr4D 77.500 200 28 12 1 186 4678874 4678678 1.250000e-18 104.0
36 TraesCS3B01G313200 chr6A 86.364 88 8 2 1 84 579129964 579130051 2.720000e-15 93.5
37 TraesCS3B01G313200 chr6A 84.270 89 8 6 1 84 59806803 59806890 5.880000e-12 82.4
38 TraesCS3B01G313200 chr3D 95.122 41 2 0 837 877 601116666 601116626 5.920000e-07 65.8
39 TraesCS3B01G313200 chr4A 100.000 29 0 0 837 865 1152160 1152188 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G313200 chr3B 503032621 503035184 2563 False 1211.5 3197 97.849333 1 2564 3 chr3B.!!$F5 2563
1 TraesCS3B01G313200 chr3B 107955432 107956419 987 False 1166.0 1166 88.253000 860 1847 1 chr3B.!!$F2 987
2 TraesCS3B01G313200 chr3B 503057140 503057719 579 False 900.0 900 94.655000 1985 2564 1 chr3B.!!$F4 579
3 TraesCS3B01G313200 chr3B 431304945 431305524 579 True 817.0 817 92.069000 1985 2564 1 chr3B.!!$R1 579
4 TraesCS3B01G313200 chr3B 439411072 439411651 579 False 817.0 817 92.069000 1985 2564 1 chr3B.!!$F3 579
5 TraesCS3B01G313200 chr7B 518466251 518467249 998 True 1328.0 1328 90.999000 862 1847 1 chr7B.!!$R3 985
6 TraesCS3B01G313200 chr7B 123402278 123403226 948 True 1136.0 1136 88.391000 884 1848 1 chr7B.!!$R1 964
7 TraesCS3B01G313200 chr7B 713627372 713628024 652 False 874.0 874 91.271000 936 1571 1 chr7B.!!$F1 635
8 TraesCS3B01G313200 chr5D 434724330 434725312 982 False 1317.0 1317 91.230000 882 1847 1 chr5D.!!$F1 965
9 TraesCS3B01G313200 chr5B 639140064 639141046 982 False 1314.0 1314 90.909000 860 1845 1 chr5B.!!$F1 985
10 TraesCS3B01G313200 chr1D 422065472 422066404 932 True 1256.0 1256 91.004000 902 1845 1 chr1D.!!$R2 943
11 TraesCS3B01G313200 chr1D 13227899 13228861 962 True 1238.0 1238 89.751000 860 1855 1 chr1D.!!$R1 995
12 TraesCS3B01G313200 chr3A 744559893 744560838 945 True 1232.0 1232 90.556000 915 1843 1 chr3A.!!$R1 928
13 TraesCS3B01G313200 chr2B 212305525 212306442 917 False 1230.0 1230 91.295000 952 1845 1 chr2B.!!$F4 893
14 TraesCS3B01G313200 chr2B 182280620 182281199 579 False 833.0 833 92.586000 1985 2564 1 chr2B.!!$F3 579
15 TraesCS3B01G313200 chr2B 228264318 228264896 578 True 832.0 832 92.586000 1985 2564 1 chr2B.!!$R1 579
16 TraesCS3B01G313200 chr2B 113090453 113091032 579 False 828.0 828 92.427000 1985 2564 1 chr2B.!!$F2 579
17 TraesCS3B01G313200 chr6B 114516039 114517052 1013 True 1218.0 1218 88.845000 860 1848 1 chr6B.!!$R1 988
18 TraesCS3B01G313200 chr5A 131799438 131800431 993 True 1203.0 1203 88.878000 839 1812 1 chr5A.!!$R1 973
19 TraesCS3B01G313200 chr7A 515967123 515968031 908 False 1120.0 1120 89.069000 938 1847 1 chr7A.!!$F1 909
20 TraesCS3B01G313200 chr2D 264816797 264817662 865 False 1079.0 1079 89.274000 969 1847 1 chr2D.!!$F1 878
21 TraesCS3B01G313200 chr4B 164868280 164868860 580 False 835.0 835 92.599000 1984 2564 1 chr4B.!!$F1 580
22 TraesCS3B01G313200 chr4B 164890807 164891387 580 False 819.0 819 92.083000 1984 2564 1 chr4B.!!$F2 580
23 TraesCS3B01G313200 chr1B 112962323 112962907 584 False 821.0 821 91.966000 1980 2564 1 chr1B.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 1.247567 CAACCGCCACTTCATTTCCT 58.752 50.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2174 0.303493 CCGACACAGAACAACAACCG 59.697 55.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.639171 CAAACGCCCAACCGCCAC 62.639 66.667 0.00 0.00 0.00 5.01
26 27 4.887190 AAACGCCCAACCGCCACT 62.887 61.111 0.00 0.00 0.00 4.00
27 28 4.887190 AACGCCCAACCGCCACTT 62.887 61.111 0.00 0.00 0.00 3.16
30 31 2.676471 GCCCAACCGCCACTTCAT 60.676 61.111 0.00 0.00 0.00 2.57
31 32 2.275380 GCCCAACCGCCACTTCATT 61.275 57.895 0.00 0.00 0.00 2.57
35 36 1.247567 CAACCGCCACTTCATTTCCT 58.752 50.000 0.00 0.00 0.00 3.36
37 38 1.995376 ACCGCCACTTCATTTCCTTT 58.005 45.000 0.00 0.00 0.00 3.11
41 42 1.729149 GCCACTTCATTTCCTTTCGCG 60.729 52.381 0.00 0.00 0.00 5.87
42 43 1.606606 CACTTCATTTCCTTTCGCGC 58.393 50.000 0.00 0.00 0.00 6.86
67 68 3.691342 CGACCTCCTGCCCGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
68 69 2.047179 GACCTCCTGCCCGTTCAC 60.047 66.667 0.00 0.00 0.00 3.18
69 70 3.607370 GACCTCCTGCCCGTTCACC 62.607 68.421 0.00 0.00 0.00 4.02
70 71 3.636231 CCTCCTGCCCGTTCACCA 61.636 66.667 0.00 0.00 0.00 4.17
72 73 1.450312 CTCCTGCCCGTTCACCATC 60.450 63.158 0.00 0.00 0.00 3.51
73 74 2.819595 CCTGCCCGTTCACCATCG 60.820 66.667 0.00 0.00 0.00 3.84
133 134 4.996434 CCCGCATCAGATCCGGCC 62.996 72.222 7.32 0.00 40.65 6.13
134 135 4.996434 CCGCATCAGATCCGGCCC 62.996 72.222 0.00 0.00 35.14 5.80
135 136 4.996434 CGCATCAGATCCGGCCCC 62.996 72.222 0.00 0.00 0.00 5.80
136 137 4.996434 GCATCAGATCCGGCCCCG 62.996 72.222 0.00 0.00 39.44 5.73
137 138 4.996434 CATCAGATCCGGCCCCGC 62.996 72.222 0.00 0.00 38.24 6.13
884 885 4.065281 CCCGACTCCGTCCACCAC 62.065 72.222 0.00 0.00 0.00 4.16
885 886 4.065281 CCGACTCCGTCCACCACC 62.065 72.222 0.00 0.00 0.00 4.61
886 887 3.299977 CGACTCCGTCCACCACCA 61.300 66.667 0.00 0.00 0.00 4.17
887 888 2.342648 GACTCCGTCCACCACCAC 59.657 66.667 0.00 0.00 0.00 4.16
888 889 3.236003 GACTCCGTCCACCACCACC 62.236 68.421 0.00 0.00 0.00 4.61
889 890 4.016706 CTCCGTCCACCACCACCC 62.017 72.222 0.00 0.00 0.00 4.61
892 893 4.016706 CGTCCACCACCACCCCTC 62.017 72.222 0.00 0.00 0.00 4.30
893 894 2.852075 GTCCACCACCACCCCTCA 60.852 66.667 0.00 0.00 0.00 3.86
894 895 2.529136 TCCACCACCACCCCTCAG 60.529 66.667 0.00 0.00 0.00 3.35
895 896 4.351054 CCACCACCACCCCTCAGC 62.351 72.222 0.00 0.00 0.00 4.26
896 897 3.252284 CACCACCACCCCTCAGCT 61.252 66.667 0.00 0.00 0.00 4.24
897 898 2.930562 ACCACCACCCCTCAGCTC 60.931 66.667 0.00 0.00 0.00 4.09
898 899 2.608988 CCACCACCCCTCAGCTCT 60.609 66.667 0.00 0.00 0.00 4.09
899 900 2.667418 CACCACCCCTCAGCTCTG 59.333 66.667 0.00 0.00 0.00 3.35
900 901 3.325753 ACCACCCCTCAGCTCTGC 61.326 66.667 0.00 0.00 0.00 4.26
1020 1132 2.125673 GCGCCTAAGAAGACGCCA 60.126 61.111 0.00 0.00 45.35 5.69
1195 1310 2.266055 CTCGGGAGCACCTCAACC 59.734 66.667 0.00 0.00 36.97 3.77
1365 1525 2.117156 GTACGTCCAGGCCGAGCTA 61.117 63.158 0.00 0.00 0.00 3.32
1661 1862 6.822442 TGTTGAATGGACTAGTAGTTTGTCA 58.178 36.000 3.85 3.91 33.84 3.58
1849 2053 4.855715 TCTATTGGAGATGCTCTAACGG 57.144 45.455 0.00 0.00 34.03 4.44
1855 2059 3.196007 GAGATGCTCTAACGGATCTCG 57.804 52.381 6.57 0.00 44.91 4.04
1865 2069 2.992089 CGGATCTCGTGGGATTTGG 58.008 57.895 0.00 0.00 0.00 3.28
1866 2070 1.160329 CGGATCTCGTGGGATTTGGC 61.160 60.000 0.00 0.00 0.00 4.52
1867 2071 0.819666 GGATCTCGTGGGATTTGGCC 60.820 60.000 0.00 0.00 0.00 5.36
1868 2072 1.153168 ATCTCGTGGGATTTGGCCG 60.153 57.895 0.00 0.00 0.00 6.13
1869 2073 2.608970 ATCTCGTGGGATTTGGCCGG 62.609 60.000 0.00 0.00 0.00 6.13
1870 2074 3.622060 CTCGTGGGATTTGGCCGGT 62.622 63.158 1.90 0.00 0.00 5.28
1871 2075 3.439540 CGTGGGATTTGGCCGGTG 61.440 66.667 1.90 0.00 0.00 4.94
1872 2076 2.282887 GTGGGATTTGGCCGGTGT 60.283 61.111 1.90 0.00 0.00 4.16
1873 2077 1.906333 GTGGGATTTGGCCGGTGTT 60.906 57.895 1.90 0.00 0.00 3.32
1874 2078 1.905843 TGGGATTTGGCCGGTGTTG 60.906 57.895 1.90 0.00 0.00 3.33
1875 2079 2.645192 GGGATTTGGCCGGTGTTGG 61.645 63.158 1.90 0.00 0.00 3.77
1876 2080 1.906333 GGATTTGGCCGGTGTTGGT 60.906 57.895 1.90 0.00 0.00 3.67
1877 2081 1.584495 GATTTGGCCGGTGTTGGTC 59.416 57.895 1.90 0.00 0.00 4.02
1878 2082 0.893727 GATTTGGCCGGTGTTGGTCT 60.894 55.000 1.90 0.00 33.69 3.85
1879 2083 0.469144 ATTTGGCCGGTGTTGGTCTT 60.469 50.000 1.90 0.00 33.69 3.01
1880 2084 0.684805 TTTGGCCGGTGTTGGTCTTT 60.685 50.000 1.90 0.00 33.69 2.52
1881 2085 1.388065 TTGGCCGGTGTTGGTCTTTG 61.388 55.000 1.90 0.00 33.69 2.77
1882 2086 2.561037 GGCCGGTGTTGGTCTTTGG 61.561 63.158 1.90 0.00 0.00 3.28
1883 2087 1.826487 GCCGGTGTTGGTCTTTGGT 60.826 57.895 1.90 0.00 0.00 3.67
1884 2088 2.029743 CCGGTGTTGGTCTTTGGTG 58.970 57.895 0.00 0.00 0.00 4.17
1885 2089 1.452145 CCGGTGTTGGTCTTTGGTGG 61.452 60.000 0.00 0.00 0.00 4.61
1886 2090 0.464735 CGGTGTTGGTCTTTGGTGGA 60.465 55.000 0.00 0.00 0.00 4.02
1887 2091 1.817740 CGGTGTTGGTCTTTGGTGGAT 60.818 52.381 0.00 0.00 0.00 3.41
1888 2092 1.886542 GGTGTTGGTCTTTGGTGGATC 59.113 52.381 0.00 0.00 0.00 3.36
1889 2093 1.886542 GTGTTGGTCTTTGGTGGATCC 59.113 52.381 4.20 4.20 0.00 3.36
1890 2094 1.496857 TGTTGGTCTTTGGTGGATCCA 59.503 47.619 11.44 11.44 45.60 3.41
1910 2114 8.770438 GATCCACTTAGATCCAGTATTCATTC 57.230 38.462 0.00 0.00 37.31 2.67
1911 2115 6.749139 TCCACTTAGATCCAGTATTCATTCG 58.251 40.000 0.00 0.00 0.00 3.34
1912 2116 6.323996 TCCACTTAGATCCAGTATTCATTCGT 59.676 38.462 0.00 0.00 0.00 3.85
1913 2117 6.642950 CCACTTAGATCCAGTATTCATTCGTC 59.357 42.308 0.00 0.00 0.00 4.20
1914 2118 7.429633 CACTTAGATCCAGTATTCATTCGTCT 58.570 38.462 0.00 0.00 0.00 4.18
1915 2119 7.593273 CACTTAGATCCAGTATTCATTCGTCTC 59.407 40.741 0.00 0.00 0.00 3.36
1916 2120 7.504238 ACTTAGATCCAGTATTCATTCGTCTCT 59.496 37.037 0.00 0.00 0.00 3.10
1917 2121 6.083098 AGATCCAGTATTCATTCGTCTCTG 57.917 41.667 0.00 0.00 0.00 3.35
1918 2122 4.655762 TCCAGTATTCATTCGTCTCTGG 57.344 45.455 0.00 0.00 41.30 3.86
1919 2123 4.023980 TCCAGTATTCATTCGTCTCTGGT 58.976 43.478 0.00 0.00 40.91 4.00
1920 2124 4.098044 TCCAGTATTCATTCGTCTCTGGTC 59.902 45.833 0.00 0.00 40.91 4.02
1921 2125 4.038361 CAGTATTCATTCGTCTCTGGTCG 58.962 47.826 0.00 0.00 0.00 4.79
1922 2126 3.695060 AGTATTCATTCGTCTCTGGTCGT 59.305 43.478 0.00 0.00 0.00 4.34
1923 2127 2.347697 TTCATTCGTCTCTGGTCGTG 57.652 50.000 0.00 0.00 0.00 4.35
1924 2128 1.244816 TCATTCGTCTCTGGTCGTGT 58.755 50.000 0.00 0.00 0.00 4.49
1925 2129 1.068541 TCATTCGTCTCTGGTCGTGTG 60.069 52.381 0.00 0.00 0.00 3.82
1926 2130 0.959553 ATTCGTCTCTGGTCGTGTGT 59.040 50.000 0.00 0.00 0.00 3.72
1927 2131 0.309922 TTCGTCTCTGGTCGTGTGTC 59.690 55.000 0.00 0.00 0.00 3.67
1928 2132 0.534427 TCGTCTCTGGTCGTGTGTCT 60.534 55.000 0.00 0.00 0.00 3.41
1929 2133 0.311165 CGTCTCTGGTCGTGTGTCTT 59.689 55.000 0.00 0.00 0.00 3.01
1930 2134 1.663445 CGTCTCTGGTCGTGTGTCTTC 60.663 57.143 0.00 0.00 0.00 2.87
1931 2135 1.337071 GTCTCTGGTCGTGTGTCTTCA 59.663 52.381 0.00 0.00 0.00 3.02
1932 2136 2.028876 TCTCTGGTCGTGTGTCTTCAA 58.971 47.619 0.00 0.00 0.00 2.69
1933 2137 2.034685 TCTCTGGTCGTGTGTCTTCAAG 59.965 50.000 0.00 0.00 0.00 3.02
1934 2138 1.754803 TCTGGTCGTGTGTCTTCAAGT 59.245 47.619 0.00 0.00 0.00 3.16
1935 2139 2.167693 TCTGGTCGTGTGTCTTCAAGTT 59.832 45.455 0.00 0.00 0.00 2.66
1936 2140 2.936498 CTGGTCGTGTGTCTTCAAGTTT 59.064 45.455 0.00 0.00 0.00 2.66
1937 2141 3.340034 TGGTCGTGTGTCTTCAAGTTTT 58.660 40.909 0.00 0.00 0.00 2.43
1938 2142 4.505808 TGGTCGTGTGTCTTCAAGTTTTA 58.494 39.130 0.00 0.00 0.00 1.52
1939 2143 5.120399 TGGTCGTGTGTCTTCAAGTTTTAT 58.880 37.500 0.00 0.00 0.00 1.40
1940 2144 5.235616 TGGTCGTGTGTCTTCAAGTTTTATC 59.764 40.000 0.00 0.00 0.00 1.75
1941 2145 5.333875 GGTCGTGTGTCTTCAAGTTTTATCC 60.334 44.000 0.00 0.00 0.00 2.59
1942 2146 5.465724 GTCGTGTGTCTTCAAGTTTTATCCT 59.534 40.000 0.00 0.00 0.00 3.24
1943 2147 6.018180 GTCGTGTGTCTTCAAGTTTTATCCTT 60.018 38.462 0.00 0.00 0.00 3.36
1944 2148 6.202188 TCGTGTGTCTTCAAGTTTTATCCTTC 59.798 38.462 0.00 0.00 0.00 3.46
1945 2149 6.202954 CGTGTGTCTTCAAGTTTTATCCTTCT 59.797 38.462 0.00 0.00 0.00 2.85
1946 2150 7.355778 GTGTGTCTTCAAGTTTTATCCTTCTG 58.644 38.462 0.00 0.00 0.00 3.02
1947 2151 7.226720 GTGTGTCTTCAAGTTTTATCCTTCTGA 59.773 37.037 0.00 0.00 0.00 3.27
1948 2152 7.939039 TGTGTCTTCAAGTTTTATCCTTCTGAT 59.061 33.333 0.00 0.00 37.49 2.90
1949 2153 8.447053 GTGTCTTCAAGTTTTATCCTTCTGATC 58.553 37.037 0.00 0.00 34.76 2.92
1950 2154 8.156820 TGTCTTCAAGTTTTATCCTTCTGATCA 58.843 33.333 0.00 0.00 34.76 2.92
1951 2155 8.447053 GTCTTCAAGTTTTATCCTTCTGATCAC 58.553 37.037 0.00 0.00 34.76 3.06
1952 2156 8.156820 TCTTCAAGTTTTATCCTTCTGATCACA 58.843 33.333 0.00 0.00 34.76 3.58
1953 2157 7.672983 TCAAGTTTTATCCTTCTGATCACAC 57.327 36.000 0.00 0.00 34.76 3.82
1954 2158 7.453393 TCAAGTTTTATCCTTCTGATCACACT 58.547 34.615 0.00 0.00 34.76 3.55
1955 2159 7.939039 TCAAGTTTTATCCTTCTGATCACACTT 59.061 33.333 0.00 0.00 34.76 3.16
1956 2160 7.913674 AGTTTTATCCTTCTGATCACACTTC 57.086 36.000 0.00 0.00 34.76 3.01
1957 2161 7.684529 AGTTTTATCCTTCTGATCACACTTCT 58.315 34.615 0.00 0.00 34.76 2.85
1958 2162 7.821846 AGTTTTATCCTTCTGATCACACTTCTC 59.178 37.037 0.00 0.00 34.76 2.87
1959 2163 7.487822 TTTATCCTTCTGATCACACTTCTCT 57.512 36.000 0.00 0.00 34.76 3.10
1960 2164 7.487822 TTATCCTTCTGATCACACTTCTCTT 57.512 36.000 0.00 0.00 34.76 2.85
1961 2165 8.595362 TTATCCTTCTGATCACACTTCTCTTA 57.405 34.615 0.00 0.00 34.76 2.10
1962 2166 6.918067 TCCTTCTGATCACACTTCTCTTAA 57.082 37.500 0.00 0.00 0.00 1.85
1963 2167 7.487822 TCCTTCTGATCACACTTCTCTTAAT 57.512 36.000 0.00 0.00 0.00 1.40
1964 2168 7.551585 TCCTTCTGATCACACTTCTCTTAATC 58.448 38.462 0.00 0.00 0.00 1.75
1965 2169 6.475076 CCTTCTGATCACACTTCTCTTAATCG 59.525 42.308 0.00 0.00 0.00 3.34
1966 2170 6.516739 TCTGATCACACTTCTCTTAATCGT 57.483 37.500 0.00 0.00 0.00 3.73
1967 2171 6.925211 TCTGATCACACTTCTCTTAATCGTT 58.075 36.000 0.00 0.00 0.00 3.85
1968 2172 6.808704 TCTGATCACACTTCTCTTAATCGTTG 59.191 38.462 0.00 0.00 0.00 4.10
1969 2173 6.687604 TGATCACACTTCTCTTAATCGTTGA 58.312 36.000 0.00 0.00 0.00 3.18
1970 2174 6.586463 TGATCACACTTCTCTTAATCGTTGAC 59.414 38.462 0.00 0.00 0.00 3.18
1971 2175 4.915667 TCACACTTCTCTTAATCGTTGACG 59.084 41.667 0.00 0.00 41.45 4.35
1972 2176 4.090066 CACACTTCTCTTAATCGTTGACGG 59.910 45.833 3.48 0.00 40.29 4.79
1973 2177 4.235360 CACTTCTCTTAATCGTTGACGGT 58.765 43.478 3.48 0.00 40.29 4.83
1974 2178 4.684703 CACTTCTCTTAATCGTTGACGGTT 59.315 41.667 7.25 7.25 45.55 4.44
1975 2179 4.684703 ACTTCTCTTAATCGTTGACGGTTG 59.315 41.667 11.94 0.00 43.25 3.77
1976 2180 4.247267 TCTCTTAATCGTTGACGGTTGT 57.753 40.909 11.94 0.00 43.25 3.32
1977 2181 4.624015 TCTCTTAATCGTTGACGGTTGTT 58.376 39.130 11.94 2.03 43.25 2.83
1978 2182 4.446385 TCTCTTAATCGTTGACGGTTGTTG 59.554 41.667 11.94 2.91 43.25 3.33
1981 2185 3.328237 AATCGTTGACGGTTGTTGTTC 57.672 42.857 0.62 0.00 41.66 3.18
2064 2268 0.173708 GTCGTGAGAAGAGCGGGATT 59.826 55.000 0.00 0.00 45.01 3.01
2172 2376 6.966534 ATTTGTGTTCTTGGAGTTCTTGAT 57.033 33.333 0.00 0.00 0.00 2.57
2428 2632 1.219124 CAGTCAGCGCCATGTAGGT 59.781 57.895 2.29 0.00 40.61 3.08
2532 2736 4.681978 GCCTCCCGTTGACACGCT 62.682 66.667 0.00 0.00 45.72 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.887190 AGTGGCGGTTGGGCGTTT 62.887 61.111 0.00 0.00 46.04 3.60
10 11 4.887190 AAGTGGCGGTTGGGCGTT 62.887 61.111 0.00 0.00 46.04 4.84
13 14 1.815817 AAATGAAGTGGCGGTTGGGC 61.816 55.000 0.00 0.00 42.69 5.36
14 15 0.243636 GAAATGAAGTGGCGGTTGGG 59.756 55.000 0.00 0.00 0.00 4.12
16 17 1.247567 AGGAAATGAAGTGGCGGTTG 58.752 50.000 0.00 0.00 0.00 3.77
17 18 1.995376 AAGGAAATGAAGTGGCGGTT 58.005 45.000 0.00 0.00 0.00 4.44
18 19 1.886542 GAAAGGAAATGAAGTGGCGGT 59.113 47.619 0.00 0.00 0.00 5.68
19 20 1.135689 CGAAAGGAAATGAAGTGGCGG 60.136 52.381 0.00 0.00 0.00 6.13
21 22 1.729149 CGCGAAAGGAAATGAAGTGGC 60.729 52.381 0.00 0.00 0.00 5.01
24 25 0.521735 GGCGCGAAAGGAAATGAAGT 59.478 50.000 12.10 0.00 0.00 3.01
25 26 0.179163 GGGCGCGAAAGGAAATGAAG 60.179 55.000 12.10 0.00 0.00 3.02
26 27 1.880186 GGGCGCGAAAGGAAATGAA 59.120 52.632 12.10 0.00 0.00 2.57
27 28 2.395360 CGGGCGCGAAAGGAAATGA 61.395 57.895 19.65 0.00 0.00 2.57
29 30 3.810896 GCGGGCGCGAAAGGAAAT 61.811 61.111 28.66 0.00 0.00 2.17
50 51 3.691342 TGAACGGGCAGGAGGTCG 61.691 66.667 0.00 0.00 0.00 4.79
51 52 2.047179 GTGAACGGGCAGGAGGTC 60.047 66.667 0.00 0.00 0.00 3.85
53 54 2.876368 GATGGTGAACGGGCAGGAGG 62.876 65.000 0.00 0.00 0.00 4.30
55 56 2.668632 GATGGTGAACGGGCAGGA 59.331 61.111 0.00 0.00 0.00 3.86
56 57 2.819595 CGATGGTGAACGGGCAGG 60.820 66.667 0.00 0.00 0.00 4.85
118 119 4.996434 GGGGCCGGATCTGATGCG 62.996 72.222 22.40 22.40 44.12 4.73
119 120 4.996434 CGGGGCCGGATCTGATGC 62.996 72.222 5.05 0.00 35.56 3.91
120 121 4.996434 GCGGGGCCGGATCTGATG 62.996 72.222 16.19 0.00 40.19 3.07
146 147 3.497031 GGGCTACGCGGAAACAGC 61.497 66.667 12.47 10.57 0.00 4.40
147 148 2.818274 GGGGCTACGCGGAAACAG 60.818 66.667 12.47 0.00 0.00 3.16
872 873 4.016706 GGGTGGTGGTGGACGGAG 62.017 72.222 0.00 0.00 0.00 4.63
875 876 4.016706 GAGGGGTGGTGGTGGACG 62.017 72.222 0.00 0.00 0.00 4.79
876 877 2.852075 TGAGGGGTGGTGGTGGAC 60.852 66.667 0.00 0.00 0.00 4.02
877 878 2.529136 CTGAGGGGTGGTGGTGGA 60.529 66.667 0.00 0.00 0.00 4.02
878 879 4.351054 GCTGAGGGGTGGTGGTGG 62.351 72.222 0.00 0.00 0.00 4.61
879 880 3.252284 AGCTGAGGGGTGGTGGTG 61.252 66.667 0.00 0.00 0.00 4.17
880 881 2.930562 GAGCTGAGGGGTGGTGGT 60.931 66.667 0.00 0.00 0.00 4.16
881 882 2.608988 AGAGCTGAGGGGTGGTGG 60.609 66.667 0.00 0.00 0.00 4.61
882 883 2.667418 CAGAGCTGAGGGGTGGTG 59.333 66.667 0.00 0.00 0.00 4.17
883 884 3.325753 GCAGAGCTGAGGGGTGGT 61.326 66.667 0.85 0.00 0.00 4.16
884 885 4.106925 GGCAGAGCTGAGGGGTGG 62.107 72.222 0.85 0.00 0.00 4.61
885 886 4.106925 GGGCAGAGCTGAGGGGTG 62.107 72.222 0.85 0.00 0.00 4.61
1020 1132 2.980246 AGAAGCCTAACTTGCCCTTT 57.020 45.000 0.00 0.00 39.29 3.11
1031 1143 0.465705 CCTCATGCCGAAGAAGCCTA 59.534 55.000 0.00 0.00 0.00 3.93
1032 1144 1.222936 CCTCATGCCGAAGAAGCCT 59.777 57.895 0.00 0.00 0.00 4.58
1195 1310 1.225855 CGACTCTCGATCTCTGGGAG 58.774 60.000 0.00 0.00 43.74 4.30
1244 1359 4.403752 TCGTGATCTCCTTCATCTTGATGT 59.596 41.667 10.01 0.00 0.00 3.06
1365 1525 3.011119 CTCACGCTTCCAGTAGTACTCT 58.989 50.000 0.00 0.00 0.00 3.24
1462 1645 0.967887 TCCTCTGAGAAGTCTGCCCG 60.968 60.000 6.17 0.00 0.00 6.13
1523 1721 3.056328 GGAACTGCGCCCAGAACC 61.056 66.667 4.18 4.29 41.77 3.62
1625 1826 9.559958 CTAGTCCATTCAACATAATTCAAACAC 57.440 33.333 0.00 0.00 0.00 3.32
1848 2052 0.819666 GGCCAAATCCCACGAGATCC 60.820 60.000 0.00 0.00 0.00 3.36
1849 2053 1.160329 CGGCCAAATCCCACGAGATC 61.160 60.000 2.24 0.00 0.00 2.75
1855 2059 1.906333 AACACCGGCCAAATCCCAC 60.906 57.895 0.00 0.00 0.00 4.61
1856 2060 1.905843 CAACACCGGCCAAATCCCA 60.906 57.895 0.00 0.00 0.00 4.37
1857 2061 2.645192 CCAACACCGGCCAAATCCC 61.645 63.158 0.00 0.00 0.00 3.85
1858 2062 1.873270 GACCAACACCGGCCAAATCC 61.873 60.000 0.00 0.00 0.00 3.01
1859 2063 0.893727 AGACCAACACCGGCCAAATC 60.894 55.000 0.00 0.00 0.00 2.17
1860 2064 0.469144 AAGACCAACACCGGCCAAAT 60.469 50.000 0.00 0.00 0.00 2.32
1861 2065 0.684805 AAAGACCAACACCGGCCAAA 60.685 50.000 0.00 0.00 0.00 3.28
1862 2066 1.076632 AAAGACCAACACCGGCCAA 60.077 52.632 0.00 0.00 0.00 4.52
1863 2067 1.826054 CAAAGACCAACACCGGCCA 60.826 57.895 0.00 0.00 0.00 5.36
1864 2068 2.561037 CCAAAGACCAACACCGGCC 61.561 63.158 0.00 0.00 0.00 6.13
1865 2069 1.826487 ACCAAAGACCAACACCGGC 60.826 57.895 0.00 0.00 0.00 6.13
1866 2070 1.452145 CCACCAAAGACCAACACCGG 61.452 60.000 0.00 0.00 0.00 5.28
1867 2071 0.464735 TCCACCAAAGACCAACACCG 60.465 55.000 0.00 0.00 0.00 4.94
1868 2072 1.886542 GATCCACCAAAGACCAACACC 59.113 52.381 0.00 0.00 0.00 4.16
1869 2073 1.886542 GGATCCACCAAAGACCAACAC 59.113 52.381 6.95 0.00 38.79 3.32
1870 2074 1.496857 TGGATCCACCAAAGACCAACA 59.503 47.619 11.44 0.00 46.75 3.33
1871 2075 2.286365 TGGATCCACCAAAGACCAAC 57.714 50.000 11.44 0.00 46.75 3.77
1885 2089 7.543868 CGAATGAATACTGGATCTAAGTGGATC 59.456 40.741 10.68 0.00 40.78 3.36
1886 2090 7.015682 ACGAATGAATACTGGATCTAAGTGGAT 59.984 37.037 10.68 0.00 0.00 3.41
1887 2091 6.323996 ACGAATGAATACTGGATCTAAGTGGA 59.676 38.462 10.68 0.00 0.00 4.02
1888 2092 6.516718 ACGAATGAATACTGGATCTAAGTGG 58.483 40.000 10.68 0.00 0.00 4.00
1889 2093 7.429633 AGACGAATGAATACTGGATCTAAGTG 58.570 38.462 10.68 0.00 0.00 3.16
1890 2094 7.504238 AGAGACGAATGAATACTGGATCTAAGT 59.496 37.037 6.79 6.79 0.00 2.24
1891 2095 7.807433 CAGAGACGAATGAATACTGGATCTAAG 59.193 40.741 0.00 0.00 0.00 2.18
1892 2096 7.255625 CCAGAGACGAATGAATACTGGATCTAA 60.256 40.741 0.00 0.00 43.91 2.10
1893 2097 6.207614 CCAGAGACGAATGAATACTGGATCTA 59.792 42.308 0.00 0.00 43.91 1.98
1894 2098 5.010516 CCAGAGACGAATGAATACTGGATCT 59.989 44.000 0.00 0.00 43.91 2.75
1895 2099 5.221342 ACCAGAGACGAATGAATACTGGATC 60.221 44.000 15.59 0.00 43.91 3.36
1896 2100 4.651503 ACCAGAGACGAATGAATACTGGAT 59.348 41.667 15.59 0.00 43.91 3.41
1897 2101 4.023980 ACCAGAGACGAATGAATACTGGA 58.976 43.478 15.59 0.00 43.91 3.86
1898 2102 4.363999 GACCAGAGACGAATGAATACTGG 58.636 47.826 0.00 0.00 45.78 4.00
1899 2103 4.038361 CGACCAGAGACGAATGAATACTG 58.962 47.826 0.00 0.00 32.72 2.74
1900 2104 3.695060 ACGACCAGAGACGAATGAATACT 59.305 43.478 0.00 0.00 35.12 2.12
1901 2105 3.791887 CACGACCAGAGACGAATGAATAC 59.208 47.826 0.00 0.00 35.12 1.89
1902 2106 3.442625 ACACGACCAGAGACGAATGAATA 59.557 43.478 0.00 0.00 35.12 1.75
1903 2107 2.231478 ACACGACCAGAGACGAATGAAT 59.769 45.455 0.00 0.00 35.12 2.57
1904 2108 1.611977 ACACGACCAGAGACGAATGAA 59.388 47.619 0.00 0.00 35.12 2.57
1905 2109 1.068541 CACACGACCAGAGACGAATGA 60.069 52.381 0.00 0.00 35.12 2.57
1906 2110 1.335964 ACACACGACCAGAGACGAATG 60.336 52.381 0.00 0.00 35.12 2.67
1907 2111 0.959553 ACACACGACCAGAGACGAAT 59.040 50.000 0.00 0.00 35.12 3.34
1908 2112 0.309922 GACACACGACCAGAGACGAA 59.690 55.000 0.00 0.00 35.12 3.85
1909 2113 0.534427 AGACACACGACCAGAGACGA 60.534 55.000 0.00 0.00 35.12 4.20
1910 2114 0.311165 AAGACACACGACCAGAGACG 59.689 55.000 0.00 0.00 37.19 4.18
1911 2115 1.337071 TGAAGACACACGACCAGAGAC 59.663 52.381 0.00 0.00 0.00 3.36
1912 2116 1.687563 TGAAGACACACGACCAGAGA 58.312 50.000 0.00 0.00 0.00 3.10
1913 2117 2.223829 ACTTGAAGACACACGACCAGAG 60.224 50.000 0.00 0.00 0.00 3.35
1914 2118 1.754803 ACTTGAAGACACACGACCAGA 59.245 47.619 0.00 0.00 0.00 3.86
1915 2119 2.225068 ACTTGAAGACACACGACCAG 57.775 50.000 0.00 0.00 0.00 4.00
1916 2120 2.684001 AACTTGAAGACACACGACCA 57.316 45.000 0.00 0.00 0.00 4.02
1917 2121 5.333875 GGATAAAACTTGAAGACACACGACC 60.334 44.000 0.00 0.00 0.00 4.79
1918 2122 5.465724 AGGATAAAACTTGAAGACACACGAC 59.534 40.000 0.00 0.00 0.00 4.34
1919 2123 5.607477 AGGATAAAACTTGAAGACACACGA 58.393 37.500 0.00 0.00 0.00 4.35
1920 2124 5.924475 AGGATAAAACTTGAAGACACACG 57.076 39.130 0.00 0.00 0.00 4.49
1921 2125 7.226720 TCAGAAGGATAAAACTTGAAGACACAC 59.773 37.037 0.00 0.00 0.00 3.82
1922 2126 7.279615 TCAGAAGGATAAAACTTGAAGACACA 58.720 34.615 0.00 0.00 0.00 3.72
1923 2127 7.730364 TCAGAAGGATAAAACTTGAAGACAC 57.270 36.000 0.00 0.00 0.00 3.67
1924 2128 8.156820 TGATCAGAAGGATAAAACTTGAAGACA 58.843 33.333 0.00 0.00 36.00 3.41
1925 2129 8.447053 GTGATCAGAAGGATAAAACTTGAAGAC 58.553 37.037 0.00 0.00 36.00 3.01
1926 2130 8.156820 TGTGATCAGAAGGATAAAACTTGAAGA 58.843 33.333 0.00 0.00 36.00 2.87
1927 2131 8.233190 GTGTGATCAGAAGGATAAAACTTGAAG 58.767 37.037 0.00 0.00 36.00 3.02
1928 2132 7.939039 AGTGTGATCAGAAGGATAAAACTTGAA 59.061 33.333 0.00 0.00 36.00 2.69
1929 2133 7.453393 AGTGTGATCAGAAGGATAAAACTTGA 58.547 34.615 0.00 0.00 36.00 3.02
1930 2134 7.678947 AGTGTGATCAGAAGGATAAAACTTG 57.321 36.000 0.00 0.00 36.00 3.16
1931 2135 8.160106 AGAAGTGTGATCAGAAGGATAAAACTT 58.840 33.333 0.00 0.00 36.00 2.66
1932 2136 7.684529 AGAAGTGTGATCAGAAGGATAAAACT 58.315 34.615 0.00 0.00 36.00 2.66
1933 2137 7.821846 AGAGAAGTGTGATCAGAAGGATAAAAC 59.178 37.037 0.00 0.00 36.00 2.43
1934 2138 7.911651 AGAGAAGTGTGATCAGAAGGATAAAA 58.088 34.615 0.00 0.00 36.00 1.52
1935 2139 7.487822 AGAGAAGTGTGATCAGAAGGATAAA 57.512 36.000 0.00 0.00 36.00 1.40
1936 2140 7.487822 AAGAGAAGTGTGATCAGAAGGATAA 57.512 36.000 0.00 0.00 36.00 1.75
1937 2141 8.595362 TTAAGAGAAGTGTGATCAGAAGGATA 57.405 34.615 0.00 0.00 36.00 2.59
1938 2142 7.487822 TTAAGAGAAGTGTGATCAGAAGGAT 57.512 36.000 0.00 0.00 39.53 3.24
1939 2143 6.918067 TTAAGAGAAGTGTGATCAGAAGGA 57.082 37.500 0.00 0.00 0.00 3.36
1940 2144 6.475076 CGATTAAGAGAAGTGTGATCAGAAGG 59.525 42.308 0.00 0.00 0.00 3.46
1941 2145 7.032580 ACGATTAAGAGAAGTGTGATCAGAAG 58.967 38.462 0.00 0.00 0.00 2.85
1942 2146 6.925211 ACGATTAAGAGAAGTGTGATCAGAA 58.075 36.000 0.00 0.00 0.00 3.02
1943 2147 6.516739 ACGATTAAGAGAAGTGTGATCAGA 57.483 37.500 0.00 0.00 0.00 3.27
1944 2148 6.808704 TCAACGATTAAGAGAAGTGTGATCAG 59.191 38.462 0.00 0.00 0.00 2.90
1945 2149 6.586463 GTCAACGATTAAGAGAAGTGTGATCA 59.414 38.462 0.00 0.00 0.00 2.92
1946 2150 6.237332 CGTCAACGATTAAGAGAAGTGTGATC 60.237 42.308 0.00 0.00 43.02 2.92
1947 2151 5.573282 CGTCAACGATTAAGAGAAGTGTGAT 59.427 40.000 0.00 0.00 43.02 3.06
1948 2152 4.915667 CGTCAACGATTAAGAGAAGTGTGA 59.084 41.667 0.00 0.00 43.02 3.58
1949 2153 4.090066 CCGTCAACGATTAAGAGAAGTGTG 59.910 45.833 3.71 0.00 43.02 3.82
1950 2154 4.235360 CCGTCAACGATTAAGAGAAGTGT 58.765 43.478 3.71 0.00 43.02 3.55
1951 2155 4.235360 ACCGTCAACGATTAAGAGAAGTG 58.765 43.478 3.71 0.00 43.02 3.16
1952 2156 4.516365 ACCGTCAACGATTAAGAGAAGT 57.484 40.909 3.71 0.00 43.02 3.01
1953 2157 4.684703 ACAACCGTCAACGATTAAGAGAAG 59.315 41.667 3.71 0.00 43.02 2.85
1954 2158 4.624015 ACAACCGTCAACGATTAAGAGAA 58.376 39.130 3.71 0.00 43.02 2.87
1955 2159 4.247267 ACAACCGTCAACGATTAAGAGA 57.753 40.909 3.71 0.00 43.02 3.10
1956 2160 4.210537 ACAACAACCGTCAACGATTAAGAG 59.789 41.667 3.71 0.00 43.02 2.85
1957 2161 4.121317 ACAACAACCGTCAACGATTAAGA 58.879 39.130 3.71 0.00 43.02 2.10
1958 2162 4.461992 ACAACAACCGTCAACGATTAAG 57.538 40.909 3.71 0.00 43.02 1.85
1959 2163 4.571580 AGAACAACAACCGTCAACGATTAA 59.428 37.500 3.71 0.00 43.02 1.40
1960 2164 4.025563 CAGAACAACAACCGTCAACGATTA 60.026 41.667 3.71 0.00 43.02 1.75
1961 2165 2.940410 AGAACAACAACCGTCAACGATT 59.060 40.909 3.71 0.00 43.02 3.34
1962 2166 2.286833 CAGAACAACAACCGTCAACGAT 59.713 45.455 3.71 0.00 43.02 3.73
1963 2167 1.661617 CAGAACAACAACCGTCAACGA 59.338 47.619 3.71 0.00 43.02 3.85
1964 2168 1.395608 ACAGAACAACAACCGTCAACG 59.604 47.619 0.00 0.00 39.44 4.10
1965 2169 2.160813 ACACAGAACAACAACCGTCAAC 59.839 45.455 0.00 0.00 0.00 3.18
1966 2170 2.417239 GACACAGAACAACAACCGTCAA 59.583 45.455 0.00 0.00 0.00 3.18
1967 2171 2.004017 GACACAGAACAACAACCGTCA 58.996 47.619 0.00 0.00 0.00 4.35
1968 2172 1.005347 CGACACAGAACAACAACCGTC 60.005 52.381 0.00 0.00 0.00 4.79
1969 2173 1.003851 CGACACAGAACAACAACCGT 58.996 50.000 0.00 0.00 0.00 4.83
1970 2174 0.303493 CCGACACAGAACAACAACCG 59.697 55.000 0.00 0.00 0.00 4.44
1971 2175 1.063469 CACCGACACAGAACAACAACC 59.937 52.381 0.00 0.00 0.00 3.77
1972 2176 1.063469 CCACCGACACAGAACAACAAC 59.937 52.381 0.00 0.00 0.00 3.32
1973 2177 1.066071 TCCACCGACACAGAACAACAA 60.066 47.619 0.00 0.00 0.00 2.83
1974 2178 0.537653 TCCACCGACACAGAACAACA 59.462 50.000 0.00 0.00 0.00 3.33
1975 2179 1.658994 TTCCACCGACACAGAACAAC 58.341 50.000 0.00 0.00 0.00 3.32
1976 2180 2.011222 GTTTCCACCGACACAGAACAA 58.989 47.619 0.00 0.00 0.00 2.83
1977 2181 1.658994 GTTTCCACCGACACAGAACA 58.341 50.000 0.00 0.00 0.00 3.18
1978 2182 0.580104 CGTTTCCACCGACACAGAAC 59.420 55.000 0.00 0.00 0.00 3.01
1981 2185 4.742274 TCGTTTCCACCGACACAG 57.258 55.556 0.00 0.00 0.00 3.66
2064 2268 2.188829 GTGCTTGTGCTGACTGCCA 61.189 57.895 1.50 0.00 42.00 4.92
2271 2475 1.122019 ATACTCCGATGCCACCTCCC 61.122 60.000 0.00 0.00 0.00 4.30
2428 2632 1.071987 CACCTCAGCAGCCTGTCAA 59.928 57.895 0.00 0.00 40.09 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.