Multiple sequence alignment - TraesCS3B01G313000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G313000 chr3B 100.000 3789 0 0 1 3789 502924631 502920843 0.000000e+00 6998.0
1 TraesCS3B01G313000 chr3B 91.919 99 8 0 3168 3266 764783397 764783299 5.100000e-29 139.0
2 TraesCS3B01G313000 chr3D 90.798 2782 145 53 405 3125 386728576 386725845 0.000000e+00 3616.0
3 TraesCS3B01G313000 chr3D 83.226 155 12 7 2992 3137 386725805 386725656 3.070000e-26 130.0
4 TraesCS3B01G313000 chr3A 90.118 2803 128 50 405 3137 508197020 508194297 0.000000e+00 3504.0
5 TraesCS3B01G313000 chr3A 82.716 162 25 2 22 180 508197850 508197689 1.420000e-29 141.0
6 TraesCS3B01G313000 chr6D 91.762 437 36 0 3351 3787 6859512 6859076 3.240000e-170 608.0
7 TraesCS3B01G313000 chr6D 91.383 441 36 1 3351 3789 30534287 30533847 1.510000e-168 603.0
8 TraesCS3B01G313000 chr6D 80.978 184 27 3 3168 3351 323692701 323692526 5.100000e-29 139.0
9 TraesCS3B01G313000 chr2D 91.935 434 35 0 3356 3789 42736253 42736686 3.240000e-170 608.0
10 TraesCS3B01G313000 chr2D 81.720 186 24 5 3166 3350 535300805 535300981 3.050000e-31 147.0
11 TraesCS3B01G313000 chr2D 87.324 71 9 0 3280 3350 606191747 606191677 8.720000e-12 82.4
12 TraesCS3B01G313000 chr7D 91.572 439 37 0 3351 3789 29889619 29890057 1.160000e-169 606.0
13 TraesCS3B01G313000 chr7A 91.572 439 37 0 3351 3789 567509882 567510320 1.160000e-169 606.0
14 TraesCS3B01G313000 chr7A 90.888 439 40 0 3351 3789 682327680 682327242 1.170000e-164 590.0
15 TraesCS3B01G313000 chr7A 80.328 183 28 2 3168 3350 682327941 682327767 8.540000e-27 132.0
16 TraesCS3B01G313000 chr5D 91.572 439 35 1 3351 3789 301630234 301629798 4.190000e-169 604.0
17 TraesCS3B01G313000 chr2B 91.055 436 39 0 3351 3786 639024228 639024663 1.170000e-164 590.0
18 TraesCS3B01G313000 chr2A 90.888 439 39 1 3351 3789 732990759 732990322 4.220000e-164 588.0
19 TraesCS3B01G313000 chr1D 84.699 183 22 3 1154 1336 435803041 435802865 1.080000e-40 178.0
20 TraesCS3B01G313000 chr1D 93.023 43 2 1 3131 3172 494560365 494560323 1.140000e-05 62.1
21 TraesCS3B01G313000 chr1B 84.127 189 16 7 1154 1336 589135549 589135369 1.810000e-38 171.0
22 TraesCS3B01G313000 chr1A 83.696 184 23 4 1154 1336 533149659 533149482 2.340000e-37 167.0
23 TraesCS3B01G313000 chr1A 90.909 99 9 0 3168 3266 586293467 586293369 2.370000e-27 134.0
24 TraesCS3B01G313000 chr5A 81.967 183 25 2 3168 3350 685990921 685991095 8.480000e-32 148.0
25 TraesCS3B01G313000 chr5A 89.899 99 10 0 3168 3266 667101533 667101631 1.100000e-25 128.0
26 TraesCS3B01G313000 chr6A 82.716 162 20 2 3168 3329 2044956 2044803 1.840000e-28 137.0
27 TraesCS3B01G313000 chr6B 80.328 183 27 3 3168 3350 508621155 508621328 3.070000e-26 130.0
28 TraesCS3B01G313000 chr7B 77.901 181 31 6 3170 3350 400954835 400954664 1.860000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G313000 chr3B 502920843 502924631 3788 True 6998.0 6998 100.000 1 3789 1 chr3B.!!$R1 3788
1 TraesCS3B01G313000 chr3D 386725656 386728576 2920 True 1873.0 3616 87.012 405 3137 2 chr3D.!!$R1 2732
2 TraesCS3B01G313000 chr3A 508194297 508197850 3553 True 1822.5 3504 86.417 22 3137 2 chr3A.!!$R1 3115
3 TraesCS3B01G313000 chr7A 682327242 682327941 699 True 361.0 590 85.608 3168 3789 2 chr7A.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 262 0.036952 ACAACATGAGGAGCGACAGG 60.037 55.0 0.0 0.0 0.00 4.00 F
981 1465 0.179129 CGTGCCGTATAAAGGGTCGT 60.179 55.0 0.0 0.0 32.95 4.34 F
1858 2361 0.108472 CATCTGGCTGCTGTTCGAGA 60.108 55.0 0.0 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 2222 0.037975 CATCAGGCCAAAACACCAGC 60.038 55.000 5.01 0.0 0.00 4.85 R
1948 2451 1.346068 AGGAGAAGCTCACTTGTGGAC 59.654 52.381 0.64 0.0 35.82 4.02 R
3235 3795 0.036765 TTCACCCACACATAGTCCGC 60.037 55.000 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.953183 TGATCGATGATGTTTTCCCTTTTG 58.047 37.500 0.54 0.00 0.00 2.44
24 25 4.173036 TCGATGATGTTTTCCCTTTTGC 57.827 40.909 0.00 0.00 0.00 3.68
25 26 2.916716 CGATGATGTTTTCCCTTTTGCG 59.083 45.455 0.00 0.00 0.00 4.85
26 27 2.810439 TGATGTTTTCCCTTTTGCGG 57.190 45.000 0.00 0.00 0.00 5.69
27 28 2.035632 TGATGTTTTCCCTTTTGCGGT 58.964 42.857 0.00 0.00 0.00 5.68
28 29 2.223923 TGATGTTTTCCCTTTTGCGGTG 60.224 45.455 0.00 0.00 0.00 4.94
36 37 1.662438 CCTTTTGCGGTGGTGTGTGT 61.662 55.000 0.00 0.00 0.00 3.72
37 38 0.525242 CTTTTGCGGTGGTGTGTGTG 60.525 55.000 0.00 0.00 0.00 3.82
52 53 3.774216 TGTGTGTGGATCATGTGGATAGA 59.226 43.478 0.00 0.00 36.00 1.98
86 87 0.107654 GCCTTGTCTTGAGGGCGTAT 60.108 55.000 0.00 0.00 35.08 3.06
92 93 2.271800 GTCTTGAGGGCGTATTGTGAG 58.728 52.381 0.00 0.00 0.00 3.51
98 99 0.322187 GGGCGTATTGTGAGGGTGTT 60.322 55.000 0.00 0.00 0.00 3.32
99 100 1.530323 GGCGTATTGTGAGGGTGTTT 58.470 50.000 0.00 0.00 0.00 2.83
106 107 2.341846 TGTGAGGGTGTTTGGTTCTC 57.658 50.000 0.00 0.00 0.00 2.87
108 109 2.241176 TGTGAGGGTGTTTGGTTCTCTT 59.759 45.455 0.00 0.00 0.00 2.85
112 113 5.358725 GTGAGGGTGTTTGGTTCTCTTTTAA 59.641 40.000 0.00 0.00 0.00 1.52
126 127 8.626526 GGTTCTCTTTTAATTAACCAGTCAACA 58.373 33.333 0.00 0.00 39.51 3.33
148 149 8.720562 CAACATTTTTAAAATGAATGGAGACCC 58.279 33.333 29.80 0.00 35.60 4.46
150 151 5.652994 TTTTAAAATGAATGGAGACCCCG 57.347 39.130 0.00 0.00 37.93 5.73
152 153 3.669939 AAAATGAATGGAGACCCCGAT 57.330 42.857 0.00 0.00 37.93 4.18
154 155 0.767375 ATGAATGGAGACCCCGATGG 59.233 55.000 0.00 0.00 37.93 3.51
174 176 7.172757 CGATGGTTAAAATTGCATTTGCTAAC 58.827 34.615 3.94 13.27 42.66 2.34
180 182 8.502387 GTTAAAATTGCATTTGCTAACCATCAA 58.498 29.630 3.94 0.00 42.66 2.57
181 183 7.507733 AAAATTGCATTTGCTAACCATCAAA 57.492 28.000 3.94 0.00 42.66 2.69
185 187 5.659463 TGCATTTGCTAACCATCAAATACC 58.341 37.500 3.94 0.00 39.92 2.73
189 191 4.853468 TGCTAACCATCAAATACCTGGA 57.147 40.909 0.00 0.00 34.08 3.86
191 193 5.765510 TGCTAACCATCAAATACCTGGAAT 58.234 37.500 0.00 0.00 34.08 3.01
192 194 6.194235 TGCTAACCATCAAATACCTGGAATT 58.806 36.000 0.00 0.00 34.08 2.17
193 195 6.667414 TGCTAACCATCAAATACCTGGAATTT 59.333 34.615 0.00 0.00 34.08 1.82
215 217 2.787601 TGACGCGTTAGTCACTTTCT 57.212 45.000 15.53 0.00 45.18 2.52
216 218 3.902261 TGACGCGTTAGTCACTTTCTA 57.098 42.857 15.53 0.00 45.18 2.10
217 219 3.558505 TGACGCGTTAGTCACTTTCTAC 58.441 45.455 15.53 0.00 45.18 2.59
219 221 4.225208 GACGCGTTAGTCACTTTCTACTT 58.775 43.478 15.53 0.00 40.65 2.24
221 223 3.607209 CGCGTTAGTCACTTTCTACTTCC 59.393 47.826 0.00 0.00 0.00 3.46
224 226 4.492611 GTTAGTCACTTTCTACTTCCCGG 58.507 47.826 0.00 0.00 0.00 5.73
226 228 1.897802 GTCACTTTCTACTTCCCGGGA 59.102 52.381 22.63 22.63 0.00 5.14
227 229 2.094130 GTCACTTTCTACTTCCCGGGAG 60.094 54.545 25.26 19.73 0.00 4.30
239 241 4.479993 CGGGAGGCTGAAGGCAGG 62.480 72.222 6.65 0.00 42.53 4.85
240 242 4.120755 GGGAGGCTGAAGGCAGGG 62.121 72.222 6.65 0.00 42.53 4.45
241 243 3.011517 GGAGGCTGAAGGCAGGGA 61.012 66.667 6.65 0.00 42.53 4.20
242 244 2.270527 GAGGCTGAAGGCAGGGAC 59.729 66.667 6.65 0.00 42.53 4.46
243 245 2.530151 AGGCTGAAGGCAGGGACA 60.530 61.111 6.65 0.00 42.53 4.02
244 246 2.129555 GAGGCTGAAGGCAGGGACAA 62.130 60.000 6.65 0.00 42.53 3.18
245 247 1.973812 GGCTGAAGGCAGGGACAAC 60.974 63.158 0.00 0.00 42.53 3.32
246 248 1.228245 GCTGAAGGCAGGGACAACA 60.228 57.895 0.00 0.00 42.53 3.33
247 249 0.610232 GCTGAAGGCAGGGACAACAT 60.610 55.000 0.00 0.00 42.53 2.71
248 250 1.171308 CTGAAGGCAGGGACAACATG 58.829 55.000 0.00 0.00 38.51 3.21
249 251 0.770499 TGAAGGCAGGGACAACATGA 59.230 50.000 0.00 0.00 0.00 3.07
250 252 1.271543 TGAAGGCAGGGACAACATGAG 60.272 52.381 0.00 0.00 0.00 2.90
259 261 1.354040 GACAACATGAGGAGCGACAG 58.646 55.000 0.00 0.00 0.00 3.51
260 262 0.036952 ACAACATGAGGAGCGACAGG 60.037 55.000 0.00 0.00 0.00 4.00
261 263 0.742281 CAACATGAGGAGCGACAGGG 60.742 60.000 0.00 0.00 0.00 4.45
263 265 0.689080 ACATGAGGAGCGACAGGGAT 60.689 55.000 0.00 0.00 0.00 3.85
264 266 0.249784 CATGAGGAGCGACAGGGATG 60.250 60.000 0.00 0.00 0.00 3.51
287 289 4.103103 TGACGCGACGAGGCAGAG 62.103 66.667 15.93 0.00 0.00 3.35
296 299 2.169789 CGAGGCAGAGCAATGGACG 61.170 63.158 0.00 0.00 0.00 4.79
301 304 1.446792 CAGAGCAATGGACGAGCGT 60.447 57.895 0.00 0.00 0.00 5.07
319 322 0.953003 GTAAGCCGTCTAGAGCCGAT 59.047 55.000 4.43 0.00 0.00 4.18
322 325 2.194212 GCCGTCTAGAGCCGATGGA 61.194 63.158 4.43 0.00 39.43 3.41
341 344 1.456165 GAAGCGAGTCCGAAACTTGAC 59.544 52.381 8.79 0.00 41.37 3.18
342 345 0.663568 AGCGAGTCCGAAACTTGACG 60.664 55.000 8.79 0.00 41.37 4.35
343 346 0.662374 GCGAGTCCGAAACTTGACGA 60.662 55.000 8.79 0.00 41.37 4.20
344 347 1.978542 CGAGTCCGAAACTTGACGAT 58.021 50.000 0.00 0.00 41.37 3.73
345 348 1.649171 CGAGTCCGAAACTTGACGATG 59.351 52.381 0.00 0.00 41.37 3.84
346 349 1.390463 GAGTCCGAAACTTGACGATGC 59.610 52.381 0.00 0.00 38.74 3.91
347 350 1.144969 GTCCGAAACTTGACGATGCA 58.855 50.000 0.00 0.00 0.00 3.96
348 351 1.126846 GTCCGAAACTTGACGATGCAG 59.873 52.381 0.00 0.00 0.00 4.41
349 352 0.443869 CCGAAACTTGACGATGCAGG 59.556 55.000 0.00 0.00 0.00 4.85
354 357 1.003355 CTTGACGATGCAGGGGTGT 60.003 57.895 0.00 0.00 0.00 4.16
356 359 3.127533 GACGATGCAGGGGTGTGC 61.128 66.667 0.00 0.00 44.27 4.57
383 386 3.369381 CCGGAGTGGTTGCAGATAG 57.631 57.895 0.00 0.00 0.00 2.08
386 389 0.181350 GGAGTGGTTGCAGATAGGGG 59.819 60.000 0.00 0.00 0.00 4.79
387 390 0.464554 GAGTGGTTGCAGATAGGGGC 60.465 60.000 0.00 0.00 0.00 5.80
388 391 1.207488 AGTGGTTGCAGATAGGGGCA 61.207 55.000 0.00 0.00 38.46 5.36
389 392 0.749454 GTGGTTGCAGATAGGGGCAG 60.749 60.000 0.00 0.00 41.68 4.85
391 394 1.609783 GTTGCAGATAGGGGCAGGT 59.390 57.895 0.00 0.00 41.68 4.00
392 395 0.837272 GTTGCAGATAGGGGCAGGTA 59.163 55.000 0.00 0.00 41.68 3.08
394 397 0.764369 TGCAGATAGGGGCAGGTAGG 60.764 60.000 0.00 0.00 34.58 3.18
395 398 0.471971 GCAGATAGGGGCAGGTAGGA 60.472 60.000 0.00 0.00 0.00 2.94
396 399 1.343069 CAGATAGGGGCAGGTAGGAC 58.657 60.000 0.00 0.00 0.00 3.85
397 400 1.133009 CAGATAGGGGCAGGTAGGACT 60.133 57.143 0.00 0.00 0.00 3.85
398 401 2.110188 CAGATAGGGGCAGGTAGGACTA 59.890 54.545 0.00 0.00 0.00 2.59
399 402 2.380590 AGATAGGGGCAGGTAGGACTAG 59.619 54.545 0.00 0.00 0.00 2.57
400 403 1.917099 TAGGGGCAGGTAGGACTAGA 58.083 55.000 0.00 0.00 0.00 2.43
401 404 1.016415 AGGGGCAGGTAGGACTAGAA 58.984 55.000 0.00 0.00 0.00 2.10
403 406 1.415200 GGGCAGGTAGGACTAGAAGG 58.585 60.000 0.00 0.00 0.00 3.46
426 903 5.782893 TGAAAATTGTTTCAGGTACCTGG 57.217 39.130 35.94 20.53 46.48 4.45
433 910 1.117150 TTCAGGTACCTGGCCGTATC 58.883 55.000 35.94 0.00 43.75 2.24
444 921 0.448990 GGCCGTATCGGTCCAAAAAC 59.551 55.000 9.86 0.00 46.90 2.43
445 922 1.947212 GGCCGTATCGGTCCAAAAACT 60.947 52.381 9.86 0.00 46.90 2.66
447 924 3.990838 GGCCGTATCGGTCCAAAAACTAT 60.991 47.826 9.86 0.00 46.90 2.12
448 925 5.455937 GGCCGTATCGGTCCAAAAACTATT 61.456 45.833 9.86 0.00 46.90 1.73
466 947 7.624360 AACTATTTCCATGAATCAGCGTTTA 57.376 32.000 0.00 0.00 0.00 2.01
468 949 8.902540 ACTATTTCCATGAATCAGCGTTTATA 57.097 30.769 0.00 0.00 0.00 0.98
469 950 8.774586 ACTATTTCCATGAATCAGCGTTTATAC 58.225 33.333 0.00 0.00 0.00 1.47
471 952 7.624360 TTTCCATGAATCAGCGTTTATACTT 57.376 32.000 0.00 0.00 0.00 2.24
472 953 6.603237 TCCATGAATCAGCGTTTATACTTG 57.397 37.500 0.00 0.00 0.00 3.16
473 954 6.345298 TCCATGAATCAGCGTTTATACTTGA 58.655 36.000 0.00 0.00 0.00 3.02
474 955 6.257849 TCCATGAATCAGCGTTTATACTTGAC 59.742 38.462 0.00 0.00 0.00 3.18
475 956 5.696260 TGAATCAGCGTTTATACTTGACG 57.304 39.130 0.00 0.00 39.61 4.35
523 1004 0.461961 CTCCTCCAAGTCGTCCCATC 59.538 60.000 0.00 0.00 0.00 3.51
579 1060 0.607217 TGCCCGAGACGACAAGACTA 60.607 55.000 0.00 0.00 0.00 2.59
736 1217 3.633065 CGTCTTCAAACTTAACCCCCAAA 59.367 43.478 0.00 0.00 0.00 3.28
743 1224 2.953453 ACTTAACCCCCAAAGACAACC 58.047 47.619 0.00 0.00 0.00 3.77
760 1241 1.995626 CCCCATCTTCCGTCCACCT 60.996 63.158 0.00 0.00 0.00 4.00
765 1246 2.507110 ATCTTCCGTCCACCTGCACG 62.507 60.000 0.00 0.00 35.72 5.34
818 1302 1.134189 CCTCCACCCCGGTCTTAATTC 60.134 57.143 0.00 0.00 35.57 2.17
820 1304 0.251073 CCACCCCGGTCTTAATTCGT 59.749 55.000 0.00 0.00 0.00 3.85
882 1366 1.746239 TCTGATACGGCGTGGACGA 60.746 57.895 24.86 11.12 43.02 4.20
981 1465 0.179129 CGTGCCGTATAAAGGGTCGT 60.179 55.000 0.00 0.00 32.95 4.34
1037 1522 3.064324 CGCAGCCAAGGGGGAAAG 61.064 66.667 0.00 0.00 40.01 2.62
1078 1565 0.606673 ACCAGAAGAAAAGCTCGGGC 60.607 55.000 0.00 0.00 39.06 6.13
1100 1587 1.933021 TTCTTAGCGTGGGAGGAGAA 58.067 50.000 0.00 0.00 0.00 2.87
1101 1588 2.160721 TCTTAGCGTGGGAGGAGAAT 57.839 50.000 0.00 0.00 0.00 2.40
1105 1592 0.760945 AGCGTGGGAGGAGAATAGGG 60.761 60.000 0.00 0.00 0.00 3.53
1195 1686 3.723348 GACAAGTTCCACGGCGGC 61.723 66.667 13.24 0.00 33.14 6.53
1213 1704 2.360852 GGGGACTCCTCGTCGTCA 60.361 66.667 0.00 0.00 43.79 4.35
1386 1877 3.627395 ATGCTTTGGTGTTAGATCCGA 57.373 42.857 0.00 0.00 0.00 4.55
1388 1879 3.950397 TGCTTTGGTGTTAGATCCGATT 58.050 40.909 0.00 0.00 0.00 3.34
1419 1910 2.362668 CGTTTCGTCTCGCTTGTTTT 57.637 45.000 0.00 0.00 0.00 2.43
1420 1911 3.492725 CGTTTCGTCTCGCTTGTTTTA 57.507 42.857 0.00 0.00 0.00 1.52
1421 1912 3.457596 CGTTTCGTCTCGCTTGTTTTAG 58.542 45.455 0.00 0.00 0.00 1.85
1422 1913 3.060740 CGTTTCGTCTCGCTTGTTTTAGT 60.061 43.478 0.00 0.00 0.00 2.24
1425 1916 1.459592 CGTCTCGCTTGTTTTAGTGGG 59.540 52.381 0.00 0.00 0.00 4.61
1427 1918 3.135994 GTCTCGCTTGTTTTAGTGGGAA 58.864 45.455 0.00 0.00 36.93 3.97
1428 1919 3.059120 GTCTCGCTTGTTTTAGTGGGAAC 60.059 47.826 0.00 0.00 36.93 3.62
1433 1926 4.273969 CGCTTGTTTTAGTGGGAACTGTTA 59.726 41.667 0.00 0.00 0.00 2.41
1455 1948 5.410355 ACTTTATTGCTTGGTACGGAGTA 57.590 39.130 0.00 0.00 45.11 2.59
1522 2015 3.370103 GGACCCTCGGTTATGTGATTTCA 60.370 47.826 0.00 0.00 35.25 2.69
1523 2016 3.871594 GACCCTCGGTTATGTGATTTCAG 59.128 47.826 0.00 0.00 35.25 3.02
1524 2017 2.614057 CCCTCGGTTATGTGATTTCAGC 59.386 50.000 0.00 0.00 0.00 4.26
1525 2018 2.614057 CCTCGGTTATGTGATTTCAGCC 59.386 50.000 0.00 0.00 0.00 4.85
1547 2042 2.783135 TCAGCCTGTTCTAAAGCTTGG 58.217 47.619 0.00 0.00 31.93 3.61
1570 2065 4.781775 TGGAGGGTTTAGAGTTTGTTCA 57.218 40.909 0.00 0.00 0.00 3.18
1571 2066 5.319043 TGGAGGGTTTAGAGTTTGTTCAT 57.681 39.130 0.00 0.00 0.00 2.57
1572 2067 6.442541 TGGAGGGTTTAGAGTTTGTTCATA 57.557 37.500 0.00 0.00 0.00 2.15
1669 2165 5.010719 TCACTCTAAACCCCTAATATGCTCG 59.989 44.000 0.00 0.00 0.00 5.03
1673 2169 5.836898 TCTAAACCCCTAATATGCTCGAGAA 59.163 40.000 18.75 5.90 0.00 2.87
1712 2208 4.574674 ACAGATCTGGATTGCTTAACCA 57.425 40.909 26.08 0.00 34.19 3.67
1726 2222 7.624360 TTGCTTAACCACCTAGATGTTTATG 57.376 36.000 0.00 0.00 0.00 1.90
1812 2315 6.197903 TCTATGGAGGAACAAGAAGATCTCA 58.802 40.000 0.00 0.00 0.00 3.27
1858 2361 0.108472 CATCTGGCTGCTGTTCGAGA 60.108 55.000 0.00 0.00 0.00 4.04
1948 2451 6.122850 TCTATTCCAATGTCTGCATTTTCG 57.877 37.500 0.00 0.00 42.91 3.46
1976 2479 2.238395 AGTGAGCTTCTCCTCCCAAATC 59.762 50.000 0.00 0.00 0.00 2.17
2040 2543 1.374758 CCTGCAGACACCGTCCTTC 60.375 63.158 17.39 0.00 32.18 3.46
2200 2703 0.253327 AGATCAACCGGGGCTTCTTC 59.747 55.000 6.32 0.00 0.00 2.87
2267 2770 8.328758 TCCTCATTGTATGTTGGTTATCTCTTT 58.671 33.333 0.00 0.00 0.00 2.52
2268 2771 8.400947 CCTCATTGTATGTTGGTTATCTCTTTG 58.599 37.037 0.00 0.00 0.00 2.77
2275 2778 5.938322 TGTTGGTTATCTCTTTGATTTCGC 58.062 37.500 0.00 0.00 36.65 4.70
2286 2789 8.845942 TCTCTTTGATTTCGCAATGATTAATG 57.154 30.769 0.00 0.00 33.32 1.90
2295 2798 3.130164 CGCAATGATTAATGGGTTGGTGA 59.870 43.478 0.00 0.00 0.00 4.02
2313 2816 3.376546 GGTGATTTCTTGATCCTGCTCAC 59.623 47.826 0.00 0.00 0.00 3.51
2317 2820 3.616956 TTCTTGATCCTGCTCACGAAT 57.383 42.857 0.00 0.00 30.95 3.34
2321 2824 4.100035 TCTTGATCCTGCTCACGAATATGT 59.900 41.667 0.00 0.00 0.00 2.29
2328 2831 4.440112 CCTGCTCACGAATATGTGACTGTA 60.440 45.833 0.00 0.00 43.62 2.74
2348 2851 5.741011 TGTACTTTGTATTCCCAGGTGATC 58.259 41.667 0.00 0.00 0.00 2.92
2361 2864 2.444706 TGATCGGAGGGCTCTGGG 60.445 66.667 0.00 0.00 36.64 4.45
2408 2911 6.346040 GCTGCAACTTTTTGACATTGTCATAC 60.346 38.462 19.63 3.85 42.40 2.39
2462 2971 7.371159 TCATCACCACTCACTAAATATCGATC 58.629 38.462 0.00 0.00 0.00 3.69
2642 3151 0.103208 CCTGTCGAAGATCCCGAAGG 59.897 60.000 9.05 12.73 46.24 3.46
2722 3231 6.427853 CCATCTGTGTTAATCTCAACTTGTCA 59.572 38.462 0.00 0.00 0.00 3.58
2734 3243 5.528690 TCTCAACTTGTCACCTCATTTTGAG 59.471 40.000 0.00 0.00 43.91 3.02
2751 3260 1.625315 TGAGGGATGGTTCTGTGTCAG 59.375 52.381 0.00 0.00 0.00 3.51
2773 3282 7.488471 GTCAGTGCGTCTGTCTTTAGTTAATAT 59.512 37.037 8.24 0.00 43.97 1.28
2774 3283 8.680001 TCAGTGCGTCTGTCTTTAGTTAATATA 58.320 33.333 8.24 0.00 43.97 0.86
2775 3284 8.744011 CAGTGCGTCTGTCTTTAGTTAATATAC 58.256 37.037 1.27 0.00 39.17 1.47
2776 3285 8.684520 AGTGCGTCTGTCTTTAGTTAATATACT 58.315 33.333 0.00 0.00 0.00 2.12
2777 3286 9.941664 GTGCGTCTGTCTTTAGTTAATATACTA 57.058 33.333 0.00 0.00 0.00 1.82
2778 3287 9.941664 TGCGTCTGTCTTTAGTTAATATACTAC 57.058 33.333 0.00 0.00 30.62 2.73
2833 3344 2.636647 TTGTGAAGTGGAGTCATGCA 57.363 45.000 0.00 0.00 0.00 3.96
2997 3543 7.527568 ACTCCCTCTATAAAGAATAAGACCG 57.472 40.000 0.00 0.00 0.00 4.79
3017 3573 9.832445 AAGACCGTTTAGTCATGATTTATACAT 57.168 29.630 0.00 0.00 39.34 2.29
3061 3617 8.650143 TCTTTGCAGAGGGAGTATTTATTTTT 57.350 30.769 4.15 0.00 0.00 1.94
3065 3625 7.639378 TGCAGAGGGAGTATTTATTTTTACCT 58.361 34.615 0.00 0.00 0.00 3.08
3067 3627 9.623000 GCAGAGGGAGTATTTATTTTTACCTTA 57.377 33.333 0.00 0.00 0.00 2.69
3141 3701 8.740906 TGATATATTTCATCGAGTACTTCCTCC 58.259 37.037 0.00 0.00 0.00 4.30
3142 3702 3.777465 TTTCATCGAGTACTTCCTCCG 57.223 47.619 0.00 0.00 0.00 4.63
3143 3703 2.414994 TCATCGAGTACTTCCTCCGT 57.585 50.000 0.00 0.00 0.00 4.69
3145 3705 3.877559 TCATCGAGTACTTCCTCCGTAA 58.122 45.455 0.00 0.00 0.00 3.18
3146 3706 3.624861 TCATCGAGTACTTCCTCCGTAAC 59.375 47.826 0.00 0.00 0.00 2.50
3147 3707 3.340814 TCGAGTACTTCCTCCGTAACT 57.659 47.619 0.00 0.00 0.00 2.24
3148 3708 4.471904 TCGAGTACTTCCTCCGTAACTA 57.528 45.455 0.00 0.00 0.00 2.24
3149 3709 4.832248 TCGAGTACTTCCTCCGTAACTAA 58.168 43.478 0.00 0.00 0.00 2.24
3150 3710 5.431765 TCGAGTACTTCCTCCGTAACTAAT 58.568 41.667 0.00 0.00 0.00 1.73
3151 3711 6.582636 TCGAGTACTTCCTCCGTAACTAATA 58.417 40.000 0.00 0.00 0.00 0.98
3152 3712 7.220030 TCGAGTACTTCCTCCGTAACTAATAT 58.780 38.462 0.00 0.00 0.00 1.28
3153 3713 8.367911 TCGAGTACTTCCTCCGTAACTAATATA 58.632 37.037 0.00 0.00 0.00 0.86
3154 3714 8.993121 CGAGTACTTCCTCCGTAACTAATATAA 58.007 37.037 0.00 0.00 0.00 0.98
3196 3756 2.878406 GTGTGGCATAATAGGCATTCGT 59.122 45.455 0.00 0.00 46.23 3.85
3204 3764 3.281727 AATAGGCATTCGTCCACACAT 57.718 42.857 0.00 0.00 0.00 3.21
3221 3781 2.102438 ATCGTGTGTGGCATGAGCG 61.102 57.895 0.00 0.00 45.30 5.03
3251 3811 2.280552 ACGCGGACTATGTGTGGGT 61.281 57.895 12.47 0.00 0.00 4.51
3255 3815 1.406887 GCGGACTATGTGTGGGTGAAT 60.407 52.381 0.00 0.00 0.00 2.57
3266 3826 6.121776 TGTGTGGGTGAATAGTAGAATTGT 57.878 37.500 0.00 0.00 0.00 2.71
3267 3827 7.247456 TGTGTGGGTGAATAGTAGAATTGTA 57.753 36.000 0.00 0.00 0.00 2.41
3268 3828 7.327975 TGTGTGGGTGAATAGTAGAATTGTAG 58.672 38.462 0.00 0.00 0.00 2.74
3269 3829 7.179516 TGTGTGGGTGAATAGTAGAATTGTAGA 59.820 37.037 0.00 0.00 0.00 2.59
3270 3830 8.038944 GTGTGGGTGAATAGTAGAATTGTAGAA 58.961 37.037 0.00 0.00 0.00 2.10
3271 3831 8.768397 TGTGGGTGAATAGTAGAATTGTAGAAT 58.232 33.333 0.00 0.00 0.00 2.40
3272 3832 9.614792 GTGGGTGAATAGTAGAATTGTAGAATT 57.385 33.333 0.00 0.00 34.29 2.17
3273 3833 9.613428 TGGGTGAATAGTAGAATTGTAGAATTG 57.387 33.333 2.01 0.00 31.58 2.32
3274 3834 9.614792 GGGTGAATAGTAGAATTGTAGAATTGT 57.385 33.333 2.01 1.23 31.58 2.71
3289 3849 2.192664 ATTGTTCATACGTGTGGGCA 57.807 45.000 12.66 8.76 0.00 5.36
3292 3852 1.231221 GTTCATACGTGTGGGCACAA 58.769 50.000 12.66 0.00 45.50 3.33
3294 3854 0.394938 TCATACGTGTGGGCACAACT 59.605 50.000 12.66 0.00 45.50 3.16
3300 3860 1.808512 CGTGTGGGCACAACTACTTCA 60.809 52.381 0.00 0.00 45.50 3.02
3307 3867 2.154462 GCACAACTACTTCATGCCACT 58.846 47.619 0.00 0.00 0.00 4.00
3308 3868 2.160417 GCACAACTACTTCATGCCACTC 59.840 50.000 0.00 0.00 0.00 3.51
3309 3869 3.668447 CACAACTACTTCATGCCACTCT 58.332 45.455 0.00 0.00 0.00 3.24
3311 3871 3.580458 ACAACTACTTCATGCCACTCTCT 59.420 43.478 0.00 0.00 0.00 3.10
3314 3874 4.029520 ACTACTTCATGCCACTCTCTCAT 58.970 43.478 0.00 0.00 0.00 2.90
3318 3878 5.809001 ACTTCATGCCACTCTCTCATTAAA 58.191 37.500 0.00 0.00 0.00 1.52
3329 3889 9.906660 CCACTCTCTCATTAAATACTACTCATC 57.093 37.037 0.00 0.00 0.00 2.92
3337 3897 9.213777 TCATTAAATACTACTCATCTTCACCCT 57.786 33.333 0.00 0.00 0.00 4.34
3339 3899 4.946478 ATACTACTCATCTTCACCCTGC 57.054 45.455 0.00 0.00 0.00 4.85
3357 4003 0.655733 GCGCGTGTGGCATAGTTATT 59.344 50.000 8.43 0.00 43.84 1.40
3374 4020 5.630121 AGTTATTCGGGATGGCAAATATGA 58.370 37.500 0.00 0.00 0.00 2.15
3383 4029 6.642131 CGGGATGGCAAATATGATTGTAAAAG 59.358 38.462 0.00 0.00 32.80 2.27
3388 4034 7.554211 TGGCAAATATGATTGTAAAAGCATGA 58.446 30.769 6.64 0.00 32.80 3.07
3400 4046 8.445275 TTGTAAAAGCATGACAACTCTCTTTA 57.555 30.769 0.00 0.00 0.00 1.85
3443 4089 9.647797 TTGACACGTCTAATTTATGATAGTTGT 57.352 29.630 0.00 0.00 0.00 3.32
3459 4105 3.128349 AGTTGTCGCGTGTAATCAAACT 58.872 40.909 5.77 3.14 0.00 2.66
3462 4108 6.094719 AGTTGTCGCGTGTAATCAAACTATA 58.905 36.000 5.77 0.00 0.00 1.31
3484 4130 9.731819 CTATAGTTGTCGTGTGTGATTAACTAT 57.268 33.333 0.00 0.00 40.38 2.12
3512 4158 7.156876 CCACATATGGTCAAACAATAGTTGT 57.843 36.000 7.80 0.00 43.00 3.32
3537 4183 3.244387 TGTGTGTTTATCTAGCTGCCACA 60.244 43.478 0.00 0.00 0.00 4.17
3538 4184 3.941483 GTGTGTTTATCTAGCTGCCACAT 59.059 43.478 0.00 0.00 34.31 3.21
3575 4221 5.590259 AGTTGCCATGTATGTTTACCTGATC 59.410 40.000 0.00 0.00 0.00 2.92
3599 4245 0.090676 CGTACGCGTAACTGCAGTTG 59.909 55.000 36.50 24.02 38.90 3.16
3623 4269 4.804139 CCGTCTAGCAAACGAATCATAGTT 59.196 41.667 4.17 0.00 42.62 2.24
3645 4291 5.878332 TGCCATGTGTGTTTATCTAGTTG 57.122 39.130 0.00 0.00 0.00 3.16
3693 4339 0.158096 CAACAACGTACGACTGTCGC 59.842 55.000 28.27 13.24 45.12 5.19
3699 4345 4.409218 TACGACTGTCGCGTGGGC 62.409 66.667 28.27 0.00 45.12 5.36
3719 4365 0.598065 GAAAAGCAGTTCGCCCACAT 59.402 50.000 0.00 0.00 44.04 3.21
3721 4367 0.823356 AAAGCAGTTCGCCCACATGT 60.823 50.000 0.00 0.00 44.04 3.21
3724 4370 2.112928 AGTTCGCCCACATGTGCA 59.887 55.556 20.81 0.64 0.00 4.57
3740 4386 0.840288 TGCATGGACTAGGTGGTGGT 60.840 55.000 0.00 0.00 0.00 4.16
3748 4394 0.472471 CTAGGTGGTGGTTGTGTGGT 59.528 55.000 0.00 0.00 0.00 4.16
3762 4408 3.713288 TGTGTGGTCAGAAACTAGTTCG 58.287 45.455 8.95 0.97 41.52 3.95
3763 4409 3.131577 TGTGTGGTCAGAAACTAGTTCGT 59.868 43.478 8.95 0.00 41.52 3.85
3764 4410 4.117685 GTGTGGTCAGAAACTAGTTCGTT 58.882 43.478 8.95 0.00 41.52 3.85
3772 4418 3.802685 AGAAACTAGTTCGTTCACACAGC 59.197 43.478 8.95 0.00 41.52 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.800471 GCAAAAGGGAAAACATCATCGATC 59.200 41.667 0.00 0.00 0.00 3.69
2 3 4.675146 CGCAAAAGGGAAAACATCATCGAT 60.675 41.667 0.00 0.00 0.00 3.59
4 5 2.916716 CGCAAAAGGGAAAACATCATCG 59.083 45.455 0.00 0.00 0.00 3.84
6 7 2.632512 ACCGCAAAAGGGAAAACATCAT 59.367 40.909 0.00 0.00 35.02 2.45
7 8 2.035632 ACCGCAAAAGGGAAAACATCA 58.964 42.857 0.00 0.00 35.02 3.07
9 10 1.069978 CCACCGCAAAAGGGAAAACAT 59.930 47.619 0.00 0.00 35.02 2.71
10 11 0.461961 CCACCGCAAAAGGGAAAACA 59.538 50.000 0.00 0.00 35.02 2.83
11 12 0.462375 ACCACCGCAAAAGGGAAAAC 59.538 50.000 0.00 0.00 35.02 2.43
12 13 0.461961 CACCACCGCAAAAGGGAAAA 59.538 50.000 0.00 0.00 35.02 2.29
13 14 0.684805 ACACCACCGCAAAAGGGAAA 60.685 50.000 0.00 0.00 35.02 3.13
14 15 1.076632 ACACCACCGCAAAAGGGAA 60.077 52.632 0.00 0.00 35.02 3.97
15 16 1.826054 CACACCACCGCAAAAGGGA 60.826 57.895 0.00 0.00 35.02 4.20
16 17 2.124693 ACACACCACCGCAAAAGGG 61.125 57.895 0.00 0.00 35.02 3.95
17 18 1.065600 CACACACCACCGCAAAAGG 59.934 57.895 0.00 0.00 37.30 3.11
18 19 0.525242 CACACACACCACCGCAAAAG 60.525 55.000 0.00 0.00 0.00 2.27
19 20 1.508545 CACACACACCACCGCAAAA 59.491 52.632 0.00 0.00 0.00 2.44
20 21 2.410687 CCACACACACCACCGCAAA 61.411 57.895 0.00 0.00 0.00 3.68
21 22 2.616797 ATCCACACACACCACCGCAA 62.617 55.000 0.00 0.00 0.00 4.85
22 23 3.113514 ATCCACACACACCACCGCA 62.114 57.895 0.00 0.00 0.00 5.69
23 24 2.281484 ATCCACACACACCACCGC 60.281 61.111 0.00 0.00 0.00 5.68
24 25 0.321564 ATGATCCACACACACCACCG 60.322 55.000 0.00 0.00 0.00 4.94
25 26 1.167851 CATGATCCACACACACCACC 58.832 55.000 0.00 0.00 0.00 4.61
26 27 1.536766 CACATGATCCACACACACCAC 59.463 52.381 0.00 0.00 0.00 4.16
27 28 1.545204 CCACATGATCCACACACACCA 60.545 52.381 0.00 0.00 0.00 4.17
28 29 1.167851 CCACATGATCCACACACACC 58.832 55.000 0.00 0.00 0.00 4.16
36 37 3.643320 GACCTGTCTATCCACATGATCCA 59.357 47.826 0.00 0.00 34.76 3.41
37 38 3.643320 TGACCTGTCTATCCACATGATCC 59.357 47.826 0.00 0.00 34.76 3.36
52 53 1.696097 AAGGCACTCGGTTGACCTGT 61.696 55.000 0.00 0.00 38.49 4.00
86 87 2.241176 AGAGAACCAAACACCCTCACAA 59.759 45.455 0.00 0.00 0.00 3.33
92 93 7.654520 GGTTAATTAAAAGAGAACCAAACACCC 59.345 37.037 0.00 0.00 39.51 4.61
98 99 8.754991 TGACTGGTTAATTAAAAGAGAACCAA 57.245 30.769 13.49 0.00 46.62 3.67
99 100 8.626526 GTTGACTGGTTAATTAAAAGAGAACCA 58.373 33.333 13.49 10.19 45.56 3.67
121 122 9.487790 GGTCTCCATTCATTTTAAAAATGTTGA 57.512 29.630 4.44 1.37 0.00 3.18
126 127 6.439058 TCGGGGTCTCCATTCATTTTAAAAAT 59.561 34.615 4.44 0.00 34.36 1.82
127 128 5.775701 TCGGGGTCTCCATTCATTTTAAAAA 59.224 36.000 4.44 0.00 34.36 1.94
132 133 3.290710 CATCGGGGTCTCCATTCATTTT 58.709 45.455 0.00 0.00 34.36 1.82
133 134 2.423373 CCATCGGGGTCTCCATTCATTT 60.423 50.000 0.00 0.00 34.36 2.32
135 136 0.767375 CCATCGGGGTCTCCATTCAT 59.233 55.000 0.00 0.00 34.36 2.57
136 137 2.220953 CCATCGGGGTCTCCATTCA 58.779 57.895 0.00 0.00 34.36 2.57
144 145 4.382577 AATGCAATTTTAACCATCGGGGTC 60.383 41.667 0.00 0.00 41.85 4.46
146 147 3.817709 ATGCAATTTTAACCATCGGGG 57.182 42.857 0.00 0.00 44.81 5.73
148 149 4.630940 AGCAAATGCAATTTTAACCATCGG 59.369 37.500 8.28 0.00 46.10 4.18
150 151 7.463544 GGTTAGCAAATGCAATTTTAACCATC 58.536 34.615 21.80 5.76 46.10 3.51
152 153 6.793492 GGTTAGCAAATGCAATTTTAACCA 57.207 33.333 21.80 0.00 46.10 3.67
154 155 8.027440 TGATGGTTAGCAAATGCAATTTTAAC 57.973 30.769 8.28 6.99 46.10 2.01
192 194 4.330620 AGAAAGTGACTAACGCGTCAAAAA 59.669 37.500 14.44 0.00 44.73 1.94
193 195 3.866910 AGAAAGTGACTAACGCGTCAAAA 59.133 39.130 14.44 0.00 44.73 2.44
196 198 2.787601 AGAAAGTGACTAACGCGTCA 57.212 45.000 14.44 2.41 41.33 4.35
201 203 4.164294 CGGGAAGTAGAAAGTGACTAACG 58.836 47.826 0.00 0.00 0.00 3.18
203 205 3.512724 CCCGGGAAGTAGAAAGTGACTAA 59.487 47.826 18.48 0.00 0.00 2.24
204 206 3.094572 CCCGGGAAGTAGAAAGTGACTA 58.905 50.000 18.48 0.00 0.00 2.59
207 209 2.176889 CTCCCGGGAAGTAGAAAGTGA 58.823 52.381 26.68 0.00 0.00 3.41
208 210 1.207329 CCTCCCGGGAAGTAGAAAGTG 59.793 57.143 26.68 8.44 37.23 3.16
210 212 0.178301 GCCTCCCGGGAAGTAGAAAG 59.822 60.000 26.68 10.07 37.23 2.62
214 216 0.976073 TTCAGCCTCCCGGGAAGTAG 60.976 60.000 26.68 15.06 37.23 2.57
215 217 0.976073 CTTCAGCCTCCCGGGAAGTA 60.976 60.000 26.68 5.72 37.23 2.24
216 218 2.203938 TTCAGCCTCCCGGGAAGT 60.204 61.111 26.68 9.04 37.23 3.01
217 219 2.586792 CTTCAGCCTCCCGGGAAG 59.413 66.667 26.68 20.93 37.23 3.46
221 223 4.479993 CTGCCTTCAGCCTCCCGG 62.480 72.222 0.00 0.00 42.71 5.73
224 226 3.011517 TCCCTGCCTTCAGCCTCC 61.012 66.667 0.00 0.00 42.71 4.30
226 228 2.156098 TTGTCCCTGCCTTCAGCCT 61.156 57.895 0.00 0.00 42.71 4.58
227 229 1.973812 GTTGTCCCTGCCTTCAGCC 60.974 63.158 0.00 0.00 42.71 4.85
228 230 0.610232 ATGTTGTCCCTGCCTTCAGC 60.610 55.000 0.00 0.00 39.00 4.26
229 231 1.171308 CATGTTGTCCCTGCCTTCAG 58.829 55.000 0.00 0.00 40.02 3.02
230 232 0.770499 TCATGTTGTCCCTGCCTTCA 59.230 50.000 0.00 0.00 0.00 3.02
231 233 1.457346 CTCATGTTGTCCCTGCCTTC 58.543 55.000 0.00 0.00 0.00 3.46
232 234 0.038744 CCTCATGTTGTCCCTGCCTT 59.961 55.000 0.00 0.00 0.00 4.35
233 235 0.842030 TCCTCATGTTGTCCCTGCCT 60.842 55.000 0.00 0.00 0.00 4.75
234 236 0.393537 CTCCTCATGTTGTCCCTGCC 60.394 60.000 0.00 0.00 0.00 4.85
235 237 1.028868 GCTCCTCATGTTGTCCCTGC 61.029 60.000 0.00 0.00 0.00 4.85
236 238 0.742281 CGCTCCTCATGTTGTCCCTG 60.742 60.000 0.00 0.00 0.00 4.45
237 239 0.904865 TCGCTCCTCATGTTGTCCCT 60.905 55.000 0.00 0.00 0.00 4.20
238 240 0.741221 GTCGCTCCTCATGTTGTCCC 60.741 60.000 0.00 0.00 0.00 4.46
239 241 0.037326 TGTCGCTCCTCATGTTGTCC 60.037 55.000 0.00 0.00 0.00 4.02
240 242 1.354040 CTGTCGCTCCTCATGTTGTC 58.646 55.000 0.00 0.00 0.00 3.18
241 243 0.036952 CCTGTCGCTCCTCATGTTGT 60.037 55.000 0.00 0.00 0.00 3.32
242 244 0.742281 CCCTGTCGCTCCTCATGTTG 60.742 60.000 0.00 0.00 0.00 3.33
243 245 0.904865 TCCCTGTCGCTCCTCATGTT 60.905 55.000 0.00 0.00 0.00 2.71
244 246 0.689080 ATCCCTGTCGCTCCTCATGT 60.689 55.000 0.00 0.00 0.00 3.21
245 247 0.249784 CATCCCTGTCGCTCCTCATG 60.250 60.000 0.00 0.00 0.00 3.07
246 248 0.397675 TCATCCCTGTCGCTCCTCAT 60.398 55.000 0.00 0.00 0.00 2.90
247 249 1.000359 TCATCCCTGTCGCTCCTCA 60.000 57.895 0.00 0.00 0.00 3.86
248 250 1.739049 CTCATCCCTGTCGCTCCTC 59.261 63.158 0.00 0.00 0.00 3.71
249 251 2.430610 GCTCATCCCTGTCGCTCCT 61.431 63.158 0.00 0.00 0.00 3.69
250 252 2.107953 GCTCATCCCTGTCGCTCC 59.892 66.667 0.00 0.00 0.00 4.70
269 271 4.103103 TCTGCCTCGTCGCGTCAG 62.103 66.667 5.77 5.55 0.00 3.51
274 276 2.510238 ATTGCTCTGCCTCGTCGC 60.510 61.111 0.00 0.00 0.00 5.19
276 278 1.086634 GTCCATTGCTCTGCCTCGTC 61.087 60.000 0.00 0.00 0.00 4.20
277 279 1.078848 GTCCATTGCTCTGCCTCGT 60.079 57.895 0.00 0.00 0.00 4.18
278 280 2.169789 CGTCCATTGCTCTGCCTCG 61.170 63.158 0.00 0.00 0.00 4.63
279 281 0.809241 CTCGTCCATTGCTCTGCCTC 60.809 60.000 0.00 0.00 0.00 4.70
280 282 1.220206 CTCGTCCATTGCTCTGCCT 59.780 57.895 0.00 0.00 0.00 4.75
281 283 2.467826 GCTCGTCCATTGCTCTGCC 61.468 63.158 0.00 0.00 0.00 4.85
283 285 0.179137 TACGCTCGTCCATTGCTCTG 60.179 55.000 0.00 0.00 0.00 3.35
284 286 0.530744 TTACGCTCGTCCATTGCTCT 59.469 50.000 0.00 0.00 0.00 4.09
285 287 0.924090 CTTACGCTCGTCCATTGCTC 59.076 55.000 0.00 0.00 0.00 4.26
287 289 1.348594 GCTTACGCTCGTCCATTGC 59.651 57.895 0.00 0.00 0.00 3.56
288 290 1.752501 CGGCTTACGCTCGTCCATTG 61.753 60.000 0.00 0.00 36.09 2.82
290 292 2.104331 CGGCTTACGCTCGTCCAT 59.896 61.111 0.00 0.00 36.09 3.41
307 310 0.318275 CGCTTCCATCGGCTCTAGAC 60.318 60.000 0.00 0.00 0.00 2.59
308 311 0.465642 TCGCTTCCATCGGCTCTAGA 60.466 55.000 0.00 0.00 0.00 2.43
312 315 1.590259 GACTCGCTTCCATCGGCTC 60.590 63.158 0.00 0.00 0.00 4.70
319 322 0.391597 AAGTTTCGGACTCGCTTCCA 59.608 50.000 3.38 0.00 37.72 3.53
322 325 1.499049 GTCAAGTTTCGGACTCGCTT 58.501 50.000 0.00 0.00 37.72 4.68
330 333 0.443869 CCTGCATCGTCAAGTTTCGG 59.556 55.000 0.00 0.00 0.00 4.30
331 334 0.443869 CCCTGCATCGTCAAGTTTCG 59.556 55.000 0.00 0.00 0.00 3.46
332 335 0.804989 CCCCTGCATCGTCAAGTTTC 59.195 55.000 0.00 0.00 0.00 2.78
342 345 4.722700 ACCGCACACCCCTGCATC 62.723 66.667 0.00 0.00 36.94 3.91
343 346 4.722700 GACCGCACACCCCTGCAT 62.723 66.667 0.00 0.00 36.94 3.96
345 348 4.722700 ATGACCGCACACCCCTGC 62.723 66.667 0.00 0.00 0.00 4.85
346 349 2.436646 GATGACCGCACACCCCTG 60.437 66.667 0.00 0.00 0.00 4.45
347 350 2.927856 TGATGACCGCACACCCCT 60.928 61.111 0.00 0.00 0.00 4.79
348 351 2.746277 GTGATGACCGCACACCCC 60.746 66.667 0.00 0.00 36.31 4.95
349 352 2.746277 GGTGATGACCGCACACCC 60.746 66.667 0.00 0.00 45.53 4.61
367 370 0.181350 CCCCTATCTGCAACCACTCC 59.819 60.000 0.00 0.00 0.00 3.85
368 371 0.464554 GCCCCTATCTGCAACCACTC 60.465 60.000 0.00 0.00 0.00 3.51
372 375 1.152881 CCTGCCCCTATCTGCAACC 60.153 63.158 0.00 0.00 36.98 3.77
374 377 1.131638 CTACCTGCCCCTATCTGCAA 58.868 55.000 0.00 0.00 36.98 4.08
376 379 0.471971 TCCTACCTGCCCCTATCTGC 60.472 60.000 0.00 0.00 0.00 4.26
379 382 2.379226 TCTAGTCCTACCTGCCCCTATC 59.621 54.545 0.00 0.00 0.00 2.08
382 385 1.016415 TTCTAGTCCTACCTGCCCCT 58.984 55.000 0.00 0.00 0.00 4.79
383 386 1.415200 CTTCTAGTCCTACCTGCCCC 58.585 60.000 0.00 0.00 0.00 5.80
386 389 2.736347 TCACCTTCTAGTCCTACCTGC 58.264 52.381 0.00 0.00 0.00 4.85
387 390 5.740290 TTTTCACCTTCTAGTCCTACCTG 57.260 43.478 0.00 0.00 0.00 4.00
388 391 6.272558 ACAATTTTCACCTTCTAGTCCTACCT 59.727 38.462 0.00 0.00 0.00 3.08
389 392 6.473758 ACAATTTTCACCTTCTAGTCCTACC 58.526 40.000 0.00 0.00 0.00 3.18
391 394 8.215050 TGAAACAATTTTCACCTTCTAGTCCTA 58.785 33.333 0.00 0.00 45.08 2.94
392 395 7.060421 TGAAACAATTTTCACCTTCTAGTCCT 58.940 34.615 0.00 0.00 45.08 3.85
394 397 7.013369 ACCTGAAACAATTTTCACCTTCTAGTC 59.987 37.037 0.00 0.00 45.08 2.59
395 398 6.833933 ACCTGAAACAATTTTCACCTTCTAGT 59.166 34.615 0.00 0.00 45.08 2.57
396 399 7.277174 ACCTGAAACAATTTTCACCTTCTAG 57.723 36.000 0.00 0.00 45.08 2.43
397 400 7.229907 GGTACCTGAAACAATTTTCACCTTCTA 59.770 37.037 4.06 0.00 45.08 2.10
398 401 6.040504 GGTACCTGAAACAATTTTCACCTTCT 59.959 38.462 4.06 0.00 45.08 2.85
399 402 6.040504 AGGTACCTGAAACAATTTTCACCTTC 59.959 38.462 15.42 0.00 45.08 3.46
400 403 5.897250 AGGTACCTGAAACAATTTTCACCTT 59.103 36.000 15.42 0.00 45.08 3.50
401 404 5.301805 CAGGTACCTGAAACAATTTTCACCT 59.698 40.000 34.54 0.00 45.08 4.00
403 406 5.528870 CCAGGTACCTGAAACAATTTTCAC 58.471 41.667 38.35 0.00 45.08 3.18
433 910 5.637006 TCATGGAAATAGTTTTTGGACCG 57.363 39.130 0.00 0.00 0.00 4.79
436 913 7.322664 GCTGATTCATGGAAATAGTTTTTGGA 58.677 34.615 0.00 0.00 0.00 3.53
437 914 6.254157 CGCTGATTCATGGAAATAGTTTTTGG 59.746 38.462 0.00 0.00 0.00 3.28
438 915 6.808212 ACGCTGATTCATGGAAATAGTTTTTG 59.192 34.615 0.00 0.00 0.00 2.44
439 916 6.924111 ACGCTGATTCATGGAAATAGTTTTT 58.076 32.000 0.00 0.00 0.00 1.94
440 917 6.515272 ACGCTGATTCATGGAAATAGTTTT 57.485 33.333 0.00 0.00 0.00 2.43
444 921 8.993121 AGTATAAACGCTGATTCATGGAAATAG 58.007 33.333 0.00 0.00 0.00 1.73
445 922 8.902540 AGTATAAACGCTGATTCATGGAAATA 57.097 30.769 0.00 0.00 0.00 1.40
447 924 7.335673 TCAAGTATAAACGCTGATTCATGGAAA 59.664 33.333 0.00 0.00 0.00 3.13
448 925 6.821160 TCAAGTATAAACGCTGATTCATGGAA 59.179 34.615 0.00 0.00 0.00 3.53
736 1217 0.613777 GACGGAAGATGGGGTTGTCT 59.386 55.000 0.00 0.00 0.00 3.41
743 1224 1.221840 CAGGTGGACGGAAGATGGG 59.778 63.158 0.00 0.00 0.00 4.00
770 1251 2.603776 GTGACAGGGGACGAGGGT 60.604 66.667 0.00 0.00 0.00 4.34
798 1280 0.916809 AATTAAGACCGGGGTGGAGG 59.083 55.000 6.32 0.00 42.00 4.30
800 1282 0.538118 CGAATTAAGACCGGGGTGGA 59.462 55.000 6.32 0.00 42.00 4.02
803 1285 1.269012 TGACGAATTAAGACCGGGGT 58.731 50.000 6.32 0.00 0.00 4.95
818 1302 3.431922 TTACCCTCTCGCTTAATGACG 57.568 47.619 0.00 0.00 0.00 4.35
820 1304 3.451178 AGCTTTACCCTCTCGCTTAATGA 59.549 43.478 0.00 0.00 0.00 2.57
866 1350 1.138036 CTTCGTCCACGCCGTATCA 59.862 57.895 0.00 0.00 39.60 2.15
867 1351 2.228914 GCTTCGTCCACGCCGTATC 61.229 63.158 0.00 0.00 39.60 2.24
868 1352 2.202703 GCTTCGTCCACGCCGTAT 60.203 61.111 0.00 0.00 39.60 3.06
882 1366 1.544759 CGGTTTGGAACTGGTAGGCTT 60.545 52.381 0.00 0.00 34.07 4.35
964 1448 0.101040 CGACGACCCTTTATACGGCA 59.899 55.000 0.00 0.00 33.05 5.69
1035 1520 7.606456 GGTTGGTTTTCCTTTTCTTTCTTTCTT 59.394 33.333 0.00 0.00 41.38 2.52
1036 1521 7.103641 GGTTGGTTTTCCTTTTCTTTCTTTCT 58.896 34.615 0.00 0.00 41.38 2.52
1037 1522 6.876789 TGGTTGGTTTTCCTTTTCTTTCTTTC 59.123 34.615 0.00 0.00 41.38 2.62
1078 1565 0.245539 TCCTCCCACGCTAAGAAACG 59.754 55.000 0.00 0.00 0.00 3.60
1100 1587 3.774336 TCCCCCACGCTCCCCTAT 61.774 66.667 0.00 0.00 0.00 2.57
1101 1588 4.475444 CTCCCCCACGCTCCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
1195 1686 3.507009 GACGACGAGGAGTCCCCG 61.507 72.222 12.09 12.09 46.92 5.73
1196 1687 1.726533 GATGACGACGAGGAGTCCCC 61.727 65.000 5.25 0.00 46.92 4.81
1197 1688 1.726533 GGATGACGACGAGGAGTCCC 61.727 65.000 5.25 0.00 46.92 4.46
1213 1704 1.818785 GTCGTCCGAGTCCGAGGAT 60.819 63.158 7.06 0.00 38.97 3.24
1419 1910 6.775708 AGCAATAAAGTAACAGTTCCCACTA 58.224 36.000 0.00 0.00 0.00 2.74
1420 1911 5.631119 AGCAATAAAGTAACAGTTCCCACT 58.369 37.500 0.00 0.00 0.00 4.00
1421 1912 5.959618 AGCAATAAAGTAACAGTTCCCAC 57.040 39.130 0.00 0.00 0.00 4.61
1422 1913 5.242838 CCAAGCAATAAAGTAACAGTTCCCA 59.757 40.000 0.00 0.00 0.00 4.37
1425 1916 7.013529 CGTACCAAGCAATAAAGTAACAGTTC 58.986 38.462 0.00 0.00 0.00 3.01
1427 1918 5.410439 CCGTACCAAGCAATAAAGTAACAGT 59.590 40.000 0.00 0.00 0.00 3.55
1428 1919 5.640357 TCCGTACCAAGCAATAAAGTAACAG 59.360 40.000 0.00 0.00 0.00 3.16
1433 1926 4.281898 ACTCCGTACCAAGCAATAAAGT 57.718 40.909 0.00 0.00 0.00 2.66
1489 1982 1.544982 CCGAGGGTCCTATCGCTTCTA 60.545 57.143 10.46 0.00 37.61 2.10
1523 2016 1.403323 GCTTTAGAACAGGCTGATGGC 59.597 52.381 23.66 10.90 40.90 4.40
1524 2017 2.996631 AGCTTTAGAACAGGCTGATGG 58.003 47.619 23.66 4.93 33.50 3.51
1525 2018 3.128242 CCAAGCTTTAGAACAGGCTGATG 59.872 47.826 23.66 1.47 35.08 3.07
1547 2042 4.885325 TGAACAAACTCTAAACCCTCCAAC 59.115 41.667 0.00 0.00 0.00 3.77
1570 2065 8.322091 ACAGACCTTCAGTTTACTGCTTATTAT 58.678 33.333 5.00 0.00 43.46 1.28
1571 2066 7.602644 CACAGACCTTCAGTTTACTGCTTATTA 59.397 37.037 5.00 0.00 43.46 0.98
1572 2067 6.428159 CACAGACCTTCAGTTTACTGCTTATT 59.572 38.462 5.00 0.00 43.46 1.40
1669 2165 1.691434 CTACTGCCCCCAGATCTTCTC 59.309 57.143 0.00 0.00 41.77 2.87
1673 2169 1.273838 TGTTCTACTGCCCCCAGATCT 60.274 52.381 0.00 0.00 41.77 2.75
1712 2208 4.844349 ACACCAGCATAAACATCTAGGT 57.156 40.909 0.00 0.00 0.00 3.08
1726 2222 0.037975 CATCAGGCCAAAACACCAGC 60.038 55.000 5.01 0.00 0.00 4.85
1807 2310 1.919600 GCAAGCACCCCTCCTGAGAT 61.920 60.000 0.00 0.00 0.00 2.75
1812 2315 3.655211 CCAGCAAGCACCCCTCCT 61.655 66.667 0.00 0.00 0.00 3.69
1948 2451 1.346068 AGGAGAAGCTCACTTGTGGAC 59.654 52.381 0.64 0.00 35.82 4.02
1976 2479 7.816031 AGGTCAAGCATAAGTTGAATCAATTTG 59.184 33.333 13.00 0.67 35.71 2.32
2040 2543 7.546667 ACAATTAGCAAATTCAAATGGCTAGTG 59.453 33.333 8.48 11.42 35.16 2.74
2200 2703 3.969287 TGACCAATCTCTCTCAAGGTG 57.031 47.619 0.00 0.00 0.00 4.00
2267 2770 5.850557 ACCCATTAATCATTGCGAAATCA 57.149 34.783 0.00 0.00 0.00 2.57
2268 2771 5.463061 CCAACCCATTAATCATTGCGAAATC 59.537 40.000 0.00 0.00 0.00 2.17
2273 2776 3.130164 TCACCAACCCATTAATCATTGCG 59.870 43.478 0.00 0.00 0.00 4.85
2275 2778 7.558604 AGAAATCACCAACCCATTAATCATTG 58.441 34.615 0.00 0.00 0.00 2.82
2286 2789 3.445096 CAGGATCAAGAAATCACCAACCC 59.555 47.826 0.00 0.00 0.00 4.11
2295 2798 3.616956 TCGTGAGCAGGATCAAGAAAT 57.383 42.857 0.81 0.00 35.24 2.17
2313 2816 8.540492 GGAATACAAAGTACAGTCACATATTCG 58.460 37.037 0.00 0.00 30.64 3.34
2317 2820 7.247456 TGGGAATACAAAGTACAGTCACATA 57.753 36.000 0.00 0.00 0.00 2.29
2321 2824 4.595781 ACCTGGGAATACAAAGTACAGTCA 59.404 41.667 0.00 0.00 0.00 3.41
2328 2831 3.370527 CCGATCACCTGGGAATACAAAGT 60.371 47.826 0.00 0.00 0.00 2.66
2348 2851 1.842381 AAAGAACCCAGAGCCCTCCG 61.842 60.000 0.00 0.00 0.00 4.63
2361 2864 3.251972 CAGCTCCCAAGAACAGAAAGAAC 59.748 47.826 0.00 0.00 0.00 3.01
2408 2911 5.247110 AGGCTACAGGTGATCATTACCTATG 59.753 44.000 0.00 0.00 46.55 2.23
2642 3151 2.225255 GCTTCTTGTTCTTCAGAGCACC 59.775 50.000 0.00 0.00 35.01 5.01
2643 3152 2.874701 TGCTTCTTGTTCTTCAGAGCAC 59.125 45.455 0.00 0.00 35.01 4.40
2644 3153 2.874701 GTGCTTCTTGTTCTTCAGAGCA 59.125 45.455 0.00 0.00 36.61 4.26
2645 3154 3.137533 AGTGCTTCTTGTTCTTCAGAGC 58.862 45.455 0.00 0.00 0.00 4.09
2646 3155 5.777802 TCTAGTGCTTCTTGTTCTTCAGAG 58.222 41.667 0.00 0.00 0.00 3.35
2647 3156 5.791336 TCTAGTGCTTCTTGTTCTTCAGA 57.209 39.130 0.00 0.00 0.00 3.27
2648 3157 6.090628 GTGATCTAGTGCTTCTTGTTCTTCAG 59.909 42.308 0.00 0.00 0.00 3.02
2649 3158 5.928839 GTGATCTAGTGCTTCTTGTTCTTCA 59.071 40.000 0.00 0.00 0.00 3.02
2650 3159 5.928839 TGTGATCTAGTGCTTCTTGTTCTTC 59.071 40.000 0.00 0.00 0.00 2.87
2651 3160 5.858381 TGTGATCTAGTGCTTCTTGTTCTT 58.142 37.500 0.00 0.00 0.00 2.52
2652 3161 5.474578 TGTGATCTAGTGCTTCTTGTTCT 57.525 39.130 0.00 0.00 0.00 3.01
2653 3162 5.928839 TCTTGTGATCTAGTGCTTCTTGTTC 59.071 40.000 0.00 0.00 0.00 3.18
2734 3243 1.813513 CACTGACACAGAACCATCCC 58.186 55.000 5.76 0.00 35.18 3.85
2751 3260 8.853469 AGTATATTAACTAAAGACAGACGCAC 57.147 34.615 0.00 0.00 0.00 5.34
2777 3286 9.368416 ACACCACATCTATATGTACTATCAAGT 57.632 33.333 0.00 0.00 44.70 3.16
2778 3287 9.631452 CACACCACATCTATATGTACTATCAAG 57.369 37.037 0.00 0.00 44.70 3.02
3017 3573 9.394767 TGCAAAGAAAATACTGCTATAAGATCA 57.605 29.630 0.00 0.00 35.78 2.92
3125 3685 3.626670 AGTTACGGAGGAAGTACTCGATG 59.373 47.826 7.80 0.00 38.39 3.84
3126 3686 3.883669 AGTTACGGAGGAAGTACTCGAT 58.116 45.455 7.80 0.00 38.39 3.59
3127 3687 3.340814 AGTTACGGAGGAAGTACTCGA 57.659 47.619 7.80 0.00 38.39 4.04
3149 3709 9.261180 CGTGTGGTGATCTAAACATTCTTATAT 57.739 33.333 0.00 0.00 0.00 0.86
3150 3710 8.255206 ACGTGTGGTGATCTAAACATTCTTATA 58.745 33.333 0.00 0.00 0.00 0.98
3151 3711 7.103641 ACGTGTGGTGATCTAAACATTCTTAT 58.896 34.615 0.00 0.00 0.00 1.73
3152 3712 6.460781 ACGTGTGGTGATCTAAACATTCTTA 58.539 36.000 0.00 0.00 0.00 2.10
3153 3713 5.305585 ACGTGTGGTGATCTAAACATTCTT 58.694 37.500 0.00 0.00 0.00 2.52
3154 3714 4.894784 ACGTGTGGTGATCTAAACATTCT 58.105 39.130 0.00 0.00 0.00 2.40
3204 3764 2.738139 CGCTCATGCCACACACGA 60.738 61.111 0.00 0.00 35.36 4.35
3228 3788 3.075005 ACATAGTCCGCGTGGCCT 61.075 61.111 11.05 7.05 34.14 5.19
3230 3790 2.125673 ACACATAGTCCGCGTGGC 60.126 61.111 11.05 5.67 34.91 5.01
3235 3795 0.036765 TTCACCCACACATAGTCCGC 60.037 55.000 0.00 0.00 0.00 5.54
3239 3799 7.676683 ATTCTACTATTCACCCACACATAGT 57.323 36.000 0.00 0.00 36.59 2.12
3242 3802 6.721318 ACAATTCTACTATTCACCCACACAT 58.279 36.000 0.00 0.00 0.00 3.21
3266 3826 3.936453 GCCCACACGTATGAACAATTCTA 59.064 43.478 0.00 0.00 0.00 2.10
3267 3827 2.747446 GCCCACACGTATGAACAATTCT 59.253 45.455 0.00 0.00 0.00 2.40
3268 3828 2.486203 TGCCCACACGTATGAACAATTC 59.514 45.455 0.00 0.00 0.00 2.17
3269 3829 2.227865 GTGCCCACACGTATGAACAATT 59.772 45.455 0.00 0.00 36.98 2.32
3270 3830 1.810151 GTGCCCACACGTATGAACAAT 59.190 47.619 0.00 0.00 36.98 2.71
3271 3831 1.231221 GTGCCCACACGTATGAACAA 58.769 50.000 0.00 0.00 36.98 2.83
3272 3832 2.921374 GTGCCCACACGTATGAACA 58.079 52.632 0.00 0.00 36.98 3.18
3289 3849 3.580458 AGAGAGTGGCATGAAGTAGTTGT 59.420 43.478 0.00 0.00 0.00 3.32
3292 3852 3.435275 TGAGAGAGTGGCATGAAGTAGT 58.565 45.455 0.00 0.00 0.00 2.73
3294 3854 6.544928 TTAATGAGAGAGTGGCATGAAGTA 57.455 37.500 0.00 0.00 0.00 2.24
3300 3860 8.256356 AGTAGTATTTAATGAGAGAGTGGCAT 57.744 34.615 0.00 0.00 0.00 4.40
3311 3871 9.213777 AGGGTGAAGATGAGTAGTATTTAATGA 57.786 33.333 0.00 0.00 0.00 2.57
3314 3874 7.272978 GCAGGGTGAAGATGAGTAGTATTTAA 58.727 38.462 0.00 0.00 0.00 1.52
3318 3878 3.319405 CGCAGGGTGAAGATGAGTAGTAT 59.681 47.826 0.00 0.00 0.00 2.12
3337 3897 0.461163 ATAACTATGCCACACGCGCA 60.461 50.000 5.73 0.00 42.08 6.09
3339 3899 1.071502 CGAATAACTATGCCACACGCG 60.072 52.381 3.53 3.53 42.08 6.01
3357 4003 3.831323 ACAATCATATTTGCCATCCCGA 58.169 40.909 0.00 0.00 0.00 5.14
3374 4020 7.516198 AAGAGAGTTGTCATGCTTTTACAAT 57.484 32.000 0.83 0.00 35.72 2.71
3383 4029 6.681777 ACCAAAATAAAGAGAGTTGTCATGC 58.318 36.000 0.00 0.00 0.00 4.06
3420 4066 7.043590 GCGACAACTATCATAAATTAGACGTGT 60.044 37.037 0.00 0.00 0.00 4.49
3423 4069 6.141844 ACGCGACAACTATCATAAATTAGACG 59.858 38.462 15.93 0.00 0.00 4.18
3436 4082 4.927425 AGTTTGATTACACGCGACAACTAT 59.073 37.500 15.93 0.00 0.00 2.12
3443 4089 6.094719 ACAACTATAGTTTGATTACACGCGA 58.905 36.000 15.93 0.00 35.83 5.87
3462 4108 7.572759 CAAATAGTTAATCACACACGACAACT 58.427 34.615 0.00 0.00 31.74 3.16
3484 4130 7.256119 AACTATTGTTTGACCATATGTGGCAAA 60.256 33.333 19.52 19.52 43.12 3.68
3512 4158 5.584649 GTGGCAGCTAGATAAACACACATAA 59.415 40.000 0.00 0.00 0.00 1.90
3513 4159 5.116180 GTGGCAGCTAGATAAACACACATA 58.884 41.667 0.00 0.00 0.00 2.29
3537 4183 5.893255 ACATGGCAACTATGATTAACCACAT 59.107 36.000 0.00 0.00 37.61 3.21
3538 4184 5.260424 ACATGGCAACTATGATTAACCACA 58.740 37.500 0.00 0.00 37.61 4.17
3550 4196 6.056090 TCAGGTAAACATACATGGCAACTA 57.944 37.500 0.00 0.00 33.12 2.24
3591 4237 0.950555 TTGCTAGACGGCAACTGCAG 60.951 55.000 13.48 13.48 45.64 4.41
3599 4245 1.355971 TGATTCGTTTGCTAGACGGC 58.644 50.000 0.00 0.00 40.70 5.68
3623 4269 4.155826 GCAACTAGATAAACACACATGGCA 59.844 41.667 0.00 0.00 0.00 4.92
3645 4291 2.098298 CAGTTGCGCGTACATGGC 59.902 61.111 8.43 0.00 0.00 4.40
3693 4339 1.082104 GAACTGCTTTTCGCCCACG 60.082 57.895 0.00 0.00 42.01 4.94
3719 4365 0.324614 CACCACCTAGTCCATGCACA 59.675 55.000 0.00 0.00 0.00 4.57
3721 4367 0.840288 ACCACCACCTAGTCCATGCA 60.840 55.000 0.00 0.00 0.00 3.96
3724 4370 1.351017 CACAACCACCACCTAGTCCAT 59.649 52.381 0.00 0.00 0.00 3.41
3740 4386 4.116961 CGAACTAGTTTCTGACCACACAA 58.883 43.478 10.02 0.00 31.20 3.33
3748 4394 5.001237 TGTGTGAACGAACTAGTTTCTGA 57.999 39.130 10.02 0.00 34.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.