Multiple sequence alignment - TraesCS3B01G312500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G312500 chr3B 100.000 3754 0 0 1 3754 501988664 501984911 0.000000e+00 6933
1 TraesCS3B01G312500 chr3B 99.045 419 4 0 3336 3754 581683826 581683408 0.000000e+00 752
2 TraesCS3B01G312500 chr3B 98.329 419 7 0 3336 3754 60264549 60264967 0.000000e+00 736
3 TraesCS3B01G312500 chr3B 89.444 180 16 3 1875 2053 829381789 829381612 1.360000e-54 224
4 TraesCS3B01G312500 chr3D 94.344 3359 129 16 1 3337 386303962 386300643 0.000000e+00 5094
5 TraesCS3B01G312500 chr3A 93.639 3364 149 20 1 3337 507772546 507769221 0.000000e+00 4966
6 TraesCS3B01G312500 chr3A 99.052 422 4 0 3333 3754 605245873 605246294 0.000000e+00 758
7 TraesCS3B01G312500 chr1B 99.284 419 3 0 3336 3754 95489517 95489099 0.000000e+00 758
8 TraesCS3B01G312500 chr1B 90.374 187 15 2 1871 2057 436689166 436688983 3.750000e-60 243
9 TraesCS3B01G312500 chr1B 89.873 79 7 1 732 809 667062144 667062222 2.390000e-17 100
10 TraesCS3B01G312500 chr6B 99.045 419 4 0 3336 3754 145017052 145016634 0.000000e+00 752
11 TraesCS3B01G312500 chr1A 99.043 418 3 1 3338 3754 589034127 589034544 0.000000e+00 749
12 TraesCS3B01G312500 chr5A 98.807 419 5 0 3336 3754 603005820 603005402 0.000000e+00 747
13 TraesCS3B01G312500 chr5A 91.803 183 13 2 1870 2050 320214223 320214405 1.730000e-63 254
14 TraesCS3B01G312500 chr2B 98.329 419 6 1 3336 3754 577244690 577244273 0.000000e+00 734
15 TraesCS3B01G312500 chr2A 98.095 420 7 1 3336 3754 249761461 249761042 0.000000e+00 730
16 TraesCS3B01G312500 chr2A 92.045 176 14 0 1882 2057 184561322 184561147 8.050000e-62 248
17 TraesCS3B01G312500 chr4B 94.083 169 9 1 1882 2050 532434995 532435162 4.810000e-64 255
18 TraesCS3B01G312500 chr1D 91.444 187 13 2 1871 2057 324412404 324412221 1.730000e-63 254
19 TraesCS3B01G312500 chr7D 93.976 166 10 0 1885 2050 500775622 500775457 6.220000e-63 252
20 TraesCS3B01G312500 chr7D 86.869 198 23 3 1854 2050 454079213 454079408 6.310000e-53 219
21 TraesCS3B01G312500 chr4D 92.486 173 13 0 1887 2059 64390634 64390462 8.050000e-62 248
22 TraesCS3B01G312500 chr2D 93.413 167 10 1 1885 2050 387193861 387193695 2.900000e-61 246
23 TraesCS3B01G312500 chr5D 89.247 186 14 5 1872 2052 242367916 242368100 1.050000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G312500 chr3B 501984911 501988664 3753 True 6933 6933 100.000 1 3754 1 chr3B.!!$R1 3753
1 TraesCS3B01G312500 chr3D 386300643 386303962 3319 True 5094 5094 94.344 1 3337 1 chr3D.!!$R1 3336
2 TraesCS3B01G312500 chr3A 507769221 507772546 3325 True 4966 4966 93.639 1 3337 1 chr3A.!!$R1 3336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 459 0.471617 ACATGACCTGGCTAGATGGC 59.528 55.0 0.00 0.0 42.18 4.40 F
1785 1794 0.248990 TTGTTGCTGGCTTGCTTTCG 60.249 50.0 4.89 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1809 0.321830 GCATGCATTTGGGCCACTTT 60.322 50.0 14.21 0.0 0.00 2.66 R
3615 3648 0.037882 TGTTTCGCCAGAGCAGAGAG 60.038 55.0 0.00 0.0 39.83 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.332428 ACTAAGGGAACTACACACACAC 57.668 45.455 0.00 0.00 42.68 3.82
55 56 1.319614 TGCATCACCGTCGAGATCCA 61.320 55.000 0.00 0.00 0.00 3.41
127 128 0.548031 ACCCGCATGGACATCATCTT 59.452 50.000 0.00 0.00 37.49 2.40
136 137 1.009829 GACATCATCTTCGCCGCTTT 58.990 50.000 0.00 0.00 0.00 3.51
138 139 2.205074 ACATCATCTTCGCCGCTTTAG 58.795 47.619 0.00 0.00 0.00 1.85
223 224 2.897969 AGCTTACCTCTCGTCAAAAGGA 59.102 45.455 0.00 0.00 34.16 3.36
299 301 4.657824 ACCACGCGGGAGTGAACG 62.658 66.667 11.66 0.00 44.43 3.95
315 317 2.553602 TGAACGCTTTGTTGCATCTGAT 59.446 40.909 0.00 0.00 42.09 2.90
317 319 1.200716 ACGCTTTGTTGCATCTGATGG 59.799 47.619 18.60 2.08 0.00 3.51
325 327 2.061509 TGCATCTGATGGGTCAATGG 57.938 50.000 18.60 0.00 33.05 3.16
332 334 1.227943 ATGGGTCAATGGGATCGCG 60.228 57.895 0.00 0.00 0.00 5.87
388 390 5.389935 GCTAGGATGTTCGTGTTGAGAAAAG 60.390 44.000 0.00 0.00 0.00 2.27
390 392 5.123227 AGGATGTTCGTGTTGAGAAAAGAA 58.877 37.500 0.00 0.00 0.00 2.52
392 394 5.909610 GGATGTTCGTGTTGAGAAAAGAAAG 59.090 40.000 0.00 0.00 0.00 2.62
399 401 5.269313 GTGTTGAGAAAAGAAAGCTGACAG 58.731 41.667 0.00 0.00 0.00 3.51
402 404 5.741388 TGAGAAAAGAAAGCTGACAGTTC 57.259 39.130 3.99 1.06 0.00 3.01
411 413 9.507329 AAAGAAAGCTGACAGTTCTGATAATTA 57.493 29.630 8.62 0.00 32.03 1.40
413 415 9.107177 AGAAAGCTGACAGTTCTGATAATTATG 57.893 33.333 1.78 0.00 30.48 1.90
450 452 2.034687 GTGGCACATGACCTGGCT 59.965 61.111 13.86 0.00 44.52 4.75
457 459 0.471617 ACATGACCTGGCTAGATGGC 59.528 55.000 0.00 0.00 42.18 4.40
588 590 4.268405 CCAAGCACATCACAACAAGAAAAC 59.732 41.667 0.00 0.00 0.00 2.43
592 594 3.020984 ACATCACAACAAGAAAACGGGT 58.979 40.909 0.00 0.00 0.00 5.28
743 746 1.973281 CATTTGTGCCCAGCCTCGT 60.973 57.895 0.00 0.00 0.00 4.18
837 841 4.397832 ACGGGCACGCGGGTTATT 62.398 61.111 9.12 0.00 46.04 1.40
846 850 3.209097 CGGGTTATTGGGCCAGCG 61.209 66.667 6.23 0.00 0.00 5.18
902 906 1.597742 GTATAGACCGCGTCCACCTA 58.402 55.000 4.92 0.00 32.18 3.08
904 908 0.959553 ATAGACCGCGTCCACCTATG 59.040 55.000 4.92 0.00 32.18 2.23
1201 1206 2.827322 TCTTTTCCTCGGATTGGTCGTA 59.173 45.455 0.00 0.00 0.00 3.43
1593 1601 3.228453 GCATTCCCATGATTGAGATGGT 58.772 45.455 0.00 0.00 39.08 3.55
1606 1614 2.779430 TGAGATGGTGGCTATTCATGGT 59.221 45.455 0.00 0.00 0.00 3.55
1621 1629 4.574674 TCATGGTCAGGCTGAAATAAGT 57.425 40.909 20.62 0.00 0.00 2.24
1622 1630 4.264253 TCATGGTCAGGCTGAAATAAGTG 58.736 43.478 20.62 12.10 0.00 3.16
1623 1631 2.436417 TGGTCAGGCTGAAATAAGTGC 58.564 47.619 20.62 3.72 0.00 4.40
1624 1632 2.224744 TGGTCAGGCTGAAATAAGTGCA 60.225 45.455 20.62 0.00 0.00 4.57
1625 1633 2.421424 GGTCAGGCTGAAATAAGTGCAG 59.579 50.000 20.62 0.00 0.00 4.41
1667 1676 3.178046 TGCCTGAGGTAGAATGGTTGTA 58.822 45.455 0.00 0.00 0.00 2.41
1670 1679 4.404715 GCCTGAGGTAGAATGGTTGTAGTA 59.595 45.833 0.00 0.00 0.00 1.82
1715 1724 7.985184 TGTGCCTGAGTTTTAATCTAATATCGT 59.015 33.333 0.00 0.00 0.00 3.73
1746 1755 4.345547 GTCCTTGTTTTGGGGTTAATGGAA 59.654 41.667 0.00 0.00 0.00 3.53
1748 1757 4.591072 CCTTGTTTTGGGGTTAATGGAAGA 59.409 41.667 0.00 0.00 0.00 2.87
1782 1791 1.066257 CGTTGTTGCTGGCTTGCTT 59.934 52.632 4.89 0.00 0.00 3.91
1783 1792 0.528249 CGTTGTTGCTGGCTTGCTTT 60.528 50.000 4.89 0.00 0.00 3.51
1784 1793 1.211743 GTTGTTGCTGGCTTGCTTTC 58.788 50.000 4.89 0.00 0.00 2.62
1785 1794 0.248990 TTGTTGCTGGCTTGCTTTCG 60.249 50.000 4.89 0.00 0.00 3.46
1786 1795 1.360192 GTTGCTGGCTTGCTTTCGT 59.640 52.632 4.89 0.00 0.00 3.85
1787 1796 0.936297 GTTGCTGGCTTGCTTTCGTG 60.936 55.000 4.89 0.00 0.00 4.35
1788 1797 1.100463 TTGCTGGCTTGCTTTCGTGA 61.100 50.000 4.89 0.00 0.00 4.35
1789 1798 1.081840 GCTGGCTTGCTTTCGTGAC 60.082 57.895 0.00 0.00 0.00 3.67
1790 1799 1.510480 GCTGGCTTGCTTTCGTGACT 61.510 55.000 0.00 0.00 0.00 3.41
1791 1800 1.795768 CTGGCTTGCTTTCGTGACTA 58.204 50.000 0.00 0.00 0.00 2.59
1792 1801 1.728971 CTGGCTTGCTTTCGTGACTAG 59.271 52.381 0.00 0.00 0.00 2.57
1793 1802 1.343142 TGGCTTGCTTTCGTGACTAGA 59.657 47.619 0.00 0.00 0.00 2.43
1794 1803 2.224185 TGGCTTGCTTTCGTGACTAGAA 60.224 45.455 0.00 0.00 0.00 2.10
1795 1804 3.003480 GGCTTGCTTTCGTGACTAGAAT 58.997 45.455 0.00 0.00 0.00 2.40
1796 1805 4.181578 GGCTTGCTTTCGTGACTAGAATA 58.818 43.478 0.00 0.00 0.00 1.75
1797 1806 4.630069 GGCTTGCTTTCGTGACTAGAATAA 59.370 41.667 0.00 0.00 0.00 1.40
1798 1807 5.294552 GGCTTGCTTTCGTGACTAGAATAAT 59.705 40.000 0.00 0.00 0.00 1.28
1799 1808 6.414890 GCTTGCTTTCGTGACTAGAATAATC 58.585 40.000 0.00 0.00 0.00 1.75
1800 1809 6.036083 GCTTGCTTTCGTGACTAGAATAATCA 59.964 38.462 0.00 0.00 0.00 2.57
1801 1810 7.413000 GCTTGCTTTCGTGACTAGAATAATCAA 60.413 37.037 0.00 0.00 0.00 2.57
1802 1811 7.899178 TGCTTTCGTGACTAGAATAATCAAA 57.101 32.000 0.00 0.00 0.00 2.69
1803 1812 7.963981 TGCTTTCGTGACTAGAATAATCAAAG 58.036 34.615 0.00 0.00 0.00 2.77
1804 1813 7.602644 TGCTTTCGTGACTAGAATAATCAAAGT 59.397 33.333 0.00 0.00 0.00 2.66
1805 1814 7.900352 GCTTTCGTGACTAGAATAATCAAAGTG 59.100 37.037 0.00 0.00 0.00 3.16
1806 1815 7.827819 TTCGTGACTAGAATAATCAAAGTGG 57.172 36.000 0.00 0.00 0.00 4.00
1807 1816 5.810587 TCGTGACTAGAATAATCAAAGTGGC 59.189 40.000 0.00 0.00 0.00 5.01
1879 1888 5.479124 TTACAGAGGGAGTACAAACCTTC 57.521 43.478 0.00 1.89 34.02 3.46
1890 1899 8.890718 GGGAGTACAAACCTTCAAATTATCTAC 58.109 37.037 0.00 0.00 0.00 2.59
1891 1900 9.668497 GGAGTACAAACCTTCAAATTATCTACT 57.332 33.333 0.00 0.00 0.00 2.57
1893 1902 9.668497 AGTACAAACCTTCAAATTATCTACTCC 57.332 33.333 0.00 0.00 0.00 3.85
1918 1927 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1919 1928 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1965 1974 3.438087 ACGGAGCAAAATGAGTGAATCTG 59.562 43.478 0.00 0.00 0.00 2.90
2096 2105 2.670019 TCCTCTTAGCGTATGGCCTA 57.330 50.000 3.32 0.00 45.17 3.93
2116 2125 7.232534 TGGCCTATCAATTTTCTGTTTGTAAGT 59.767 33.333 3.32 0.00 0.00 2.24
2496 2515 8.491134 ACACTGGTAATTAAGCCTGTCATATTA 58.509 33.333 2.72 0.00 35.24 0.98
2608 2627 2.825532 GCCTTTCACTAAAAGCCATCCA 59.174 45.455 0.00 0.00 42.63 3.41
2621 2640 2.172717 AGCCATCCATTACCACTGTACC 59.827 50.000 0.00 0.00 0.00 3.34
2707 2726 7.054124 TGTAGTGTTCTTGTTCTGATCCTTTT 58.946 34.615 0.00 0.00 0.00 2.27
2708 2727 8.208224 TGTAGTGTTCTTGTTCTGATCCTTTTA 58.792 33.333 0.00 0.00 0.00 1.52
2988 3007 8.641499 TTGTTTCATGATACCAGTTTTTGTTC 57.359 30.769 12.93 0.00 0.00 3.18
2989 3008 6.915300 TGTTTCATGATACCAGTTTTTGTTCG 59.085 34.615 12.93 0.00 0.00 3.95
3043 3062 5.777850 TGCATCATGGAATCCTAAACATG 57.222 39.130 0.00 0.00 41.44 3.21
3065 3084 4.332543 TGCTCAATTCATAACGGCAGTTAG 59.667 41.667 14.68 7.51 44.96 2.34
3086 3105 7.714377 AGTTAGATAGCTCAATGGAAAGTGATG 59.286 37.037 0.00 0.00 0.00 3.07
3135 3154 2.030185 TCTCTTTCAGCGTACACTGACC 60.030 50.000 13.07 0.00 46.13 4.02
3255 3288 2.637025 CCACGCGTTTCAGGGTTG 59.363 61.111 10.22 0.00 34.98 3.77
3271 3304 6.012113 TCAGGGTTGAAGATCAATGAAATGT 58.988 36.000 0.00 0.00 38.79 2.71
3351 3384 9.956720 ACAATGATATAAGAGTAAAATGCAAGC 57.043 29.630 0.00 0.00 0.00 4.01
3352 3385 9.110617 CAATGATATAAGAGTAAAATGCAAGCG 57.889 33.333 0.00 0.00 0.00 4.68
3353 3386 6.658831 TGATATAAGAGTAAAATGCAAGCGC 58.341 36.000 0.00 0.00 39.24 5.92
3354 3387 2.247311 AAGAGTAAAATGCAAGCGCG 57.753 45.000 0.00 0.00 42.97 6.86
3355 3388 0.447801 AGAGTAAAATGCAAGCGCGG 59.552 50.000 8.83 0.00 42.97 6.46
3356 3389 0.168128 GAGTAAAATGCAAGCGCGGT 59.832 50.000 4.23 4.23 42.97 5.68
3357 3390 0.168128 AGTAAAATGCAAGCGCGGTC 59.832 50.000 12.91 0.00 42.97 4.79
3358 3391 0.796870 GTAAAATGCAAGCGCGGTCC 60.797 55.000 12.91 6.62 42.97 4.46
3359 3392 0.958382 TAAAATGCAAGCGCGGTCCT 60.958 50.000 12.91 0.00 42.97 3.85
3360 3393 0.958382 AAAATGCAAGCGCGGTCCTA 60.958 50.000 12.91 0.27 42.97 2.94
3361 3394 0.958382 AAATGCAAGCGCGGTCCTAA 60.958 50.000 12.91 0.00 42.97 2.69
3362 3395 0.748005 AATGCAAGCGCGGTCCTAAT 60.748 50.000 12.91 0.10 42.97 1.73
3363 3396 0.748005 ATGCAAGCGCGGTCCTAATT 60.748 50.000 12.91 0.00 42.97 1.40
3364 3397 1.352056 GCAAGCGCGGTCCTAATTC 59.648 57.895 12.91 0.00 0.00 2.17
3365 3398 1.090052 GCAAGCGCGGTCCTAATTCT 61.090 55.000 12.91 0.00 0.00 2.40
3366 3399 1.369625 CAAGCGCGGTCCTAATTCTT 58.630 50.000 12.91 0.00 0.00 2.52
3367 3400 1.737793 CAAGCGCGGTCCTAATTCTTT 59.262 47.619 12.91 0.00 0.00 2.52
3368 3401 1.653151 AGCGCGGTCCTAATTCTTTC 58.347 50.000 4.23 0.00 0.00 2.62
3369 3402 0.656259 GCGCGGTCCTAATTCTTTCC 59.344 55.000 8.83 0.00 0.00 3.13
3370 3403 1.296727 CGCGGTCCTAATTCTTTCCC 58.703 55.000 0.00 0.00 0.00 3.97
3371 3404 1.406341 CGCGGTCCTAATTCTTTCCCA 60.406 52.381 0.00 0.00 0.00 4.37
3372 3405 2.718563 GCGGTCCTAATTCTTTCCCAA 58.281 47.619 0.00 0.00 0.00 4.12
3373 3406 3.086282 GCGGTCCTAATTCTTTCCCAAA 58.914 45.455 0.00 0.00 0.00 3.28
3374 3407 3.508402 GCGGTCCTAATTCTTTCCCAAAA 59.492 43.478 0.00 0.00 0.00 2.44
3375 3408 4.380550 GCGGTCCTAATTCTTTCCCAAAAG 60.381 45.833 0.00 0.00 42.77 2.27
3376 3409 4.765339 CGGTCCTAATTCTTTCCCAAAAGT 59.235 41.667 0.00 0.00 42.17 2.66
3377 3410 5.335661 CGGTCCTAATTCTTTCCCAAAAGTG 60.336 44.000 0.00 0.00 42.17 3.16
3378 3411 5.538813 GGTCCTAATTCTTTCCCAAAAGTGT 59.461 40.000 0.00 0.00 42.17 3.55
3379 3412 6.294564 GGTCCTAATTCTTTCCCAAAAGTGTC 60.295 42.308 0.00 0.00 42.17 3.67
3380 3413 5.472137 TCCTAATTCTTTCCCAAAAGTGTCG 59.528 40.000 0.00 0.00 42.17 4.35
3381 3414 5.472137 CCTAATTCTTTCCCAAAAGTGTCGA 59.528 40.000 0.00 0.00 42.17 4.20
3382 3415 4.830826 ATTCTTTCCCAAAAGTGTCGAC 57.169 40.909 9.11 9.11 42.17 4.20
3383 3416 3.553828 TCTTTCCCAAAAGTGTCGACT 57.446 42.857 17.92 0.00 42.17 4.18
3384 3417 3.202906 TCTTTCCCAAAAGTGTCGACTG 58.797 45.455 17.92 5.93 42.17 3.51
3385 3418 1.961793 TTCCCAAAAGTGTCGACTGG 58.038 50.000 17.92 14.92 30.61 4.00
3386 3419 0.107831 TCCCAAAAGTGTCGACTGGG 59.892 55.000 26.36 26.36 35.20 4.45
3387 3420 0.179029 CCCAAAAGTGTCGACTGGGT 60.179 55.000 24.77 4.46 31.05 4.51
3388 3421 1.226746 CCAAAAGTGTCGACTGGGTC 58.773 55.000 17.92 2.51 30.61 4.46
3389 3422 1.226746 CAAAAGTGTCGACTGGGTCC 58.773 55.000 17.92 0.00 30.61 4.46
3390 3423 1.129058 AAAAGTGTCGACTGGGTCCT 58.871 50.000 17.92 0.24 30.61 3.85
3391 3424 2.005370 AAAGTGTCGACTGGGTCCTA 57.995 50.000 17.92 0.00 30.61 2.94
3392 3425 2.005370 AAGTGTCGACTGGGTCCTAA 57.995 50.000 17.92 0.00 30.61 2.69
3393 3426 2.233305 AGTGTCGACTGGGTCCTAAT 57.767 50.000 17.92 0.00 0.00 1.73
3394 3427 2.537143 AGTGTCGACTGGGTCCTAATT 58.463 47.619 17.92 0.00 0.00 1.40
3395 3428 2.496470 AGTGTCGACTGGGTCCTAATTC 59.504 50.000 17.92 0.00 0.00 2.17
3396 3429 2.496470 GTGTCGACTGGGTCCTAATTCT 59.504 50.000 17.92 0.00 0.00 2.40
3397 3430 3.056035 GTGTCGACTGGGTCCTAATTCTT 60.056 47.826 17.92 0.00 0.00 2.52
3398 3431 3.581332 TGTCGACTGGGTCCTAATTCTTT 59.419 43.478 17.92 0.00 0.00 2.52
3399 3432 4.182339 GTCGACTGGGTCCTAATTCTTTC 58.818 47.826 8.70 0.00 0.00 2.62
3400 3433 3.835978 TCGACTGGGTCCTAATTCTTTCA 59.164 43.478 0.00 0.00 0.00 2.69
3401 3434 4.285003 TCGACTGGGTCCTAATTCTTTCAA 59.715 41.667 0.00 0.00 0.00 2.69
3402 3435 5.001232 CGACTGGGTCCTAATTCTTTCAAA 58.999 41.667 0.00 0.00 0.00 2.69
3403 3436 5.472137 CGACTGGGTCCTAATTCTTTCAAAA 59.528 40.000 0.00 0.00 0.00 2.44
3404 3437 6.151144 CGACTGGGTCCTAATTCTTTCAAAAT 59.849 38.462 0.00 0.00 0.00 1.82
3405 3438 7.232118 ACTGGGTCCTAATTCTTTCAAAATG 57.768 36.000 0.00 0.00 0.00 2.32
3406 3439 6.036577 TGGGTCCTAATTCTTTCAAAATGC 57.963 37.500 0.00 0.00 0.00 3.56
3407 3440 5.541868 TGGGTCCTAATTCTTTCAAAATGCA 59.458 36.000 0.00 0.00 0.00 3.96
3408 3441 5.869344 GGGTCCTAATTCTTTCAAAATGCAC 59.131 40.000 0.00 0.00 0.00 4.57
3409 3442 6.454795 GGTCCTAATTCTTTCAAAATGCACA 58.545 36.000 0.00 0.00 0.00 4.57
3410 3443 7.099120 GGTCCTAATTCTTTCAAAATGCACAT 58.901 34.615 0.00 0.00 0.00 3.21
3411 3444 7.276438 GGTCCTAATTCTTTCAAAATGCACATC 59.724 37.037 0.00 0.00 0.00 3.06
3412 3445 8.031277 GTCCTAATTCTTTCAAAATGCACATCT 58.969 33.333 0.00 0.00 0.00 2.90
3413 3446 8.030692 TCCTAATTCTTTCAAAATGCACATCTG 58.969 33.333 0.00 0.00 0.00 2.90
3414 3447 7.277098 CCTAATTCTTTCAAAATGCACATCTGG 59.723 37.037 0.00 0.00 0.00 3.86
3415 3448 4.524316 TCTTTCAAAATGCACATCTGGG 57.476 40.909 0.00 0.00 0.00 4.45
3416 3449 3.896888 TCTTTCAAAATGCACATCTGGGT 59.103 39.130 0.00 0.00 0.00 4.51
3417 3450 3.940209 TTCAAAATGCACATCTGGGTC 57.060 42.857 0.00 0.00 0.00 4.46
3418 3451 2.170166 TCAAAATGCACATCTGGGTCC 58.830 47.619 0.00 0.00 0.00 4.46
3419 3452 2.173519 CAAAATGCACATCTGGGTCCT 58.826 47.619 0.00 0.00 0.00 3.85
3420 3453 3.010027 TCAAAATGCACATCTGGGTCCTA 59.990 43.478 0.00 0.00 0.00 2.94
3421 3454 3.737559 AAATGCACATCTGGGTCCTAA 57.262 42.857 0.00 0.00 0.00 2.69
3422 3455 3.737559 AATGCACATCTGGGTCCTAAA 57.262 42.857 0.00 0.00 0.00 1.85
3423 3456 3.959495 ATGCACATCTGGGTCCTAAAT 57.041 42.857 0.00 0.00 0.00 1.40
3424 3457 3.281727 TGCACATCTGGGTCCTAAATC 57.718 47.619 0.00 0.00 0.00 2.17
3425 3458 2.846206 TGCACATCTGGGTCCTAAATCT 59.154 45.455 0.00 0.00 0.00 2.40
3426 3459 3.266772 TGCACATCTGGGTCCTAAATCTT 59.733 43.478 0.00 0.00 0.00 2.40
3427 3460 4.263905 TGCACATCTGGGTCCTAAATCTTT 60.264 41.667 0.00 0.00 0.00 2.52
3428 3461 4.336713 GCACATCTGGGTCCTAAATCTTTC 59.663 45.833 0.00 0.00 0.00 2.62
3429 3462 5.749462 CACATCTGGGTCCTAAATCTTTCT 58.251 41.667 0.00 0.00 0.00 2.52
3430 3463 6.632672 GCACATCTGGGTCCTAAATCTTTCTA 60.633 42.308 0.00 0.00 0.00 2.10
3431 3464 7.338710 CACATCTGGGTCCTAAATCTTTCTAA 58.661 38.462 0.00 0.00 0.00 2.10
3432 3465 7.497249 CACATCTGGGTCCTAAATCTTTCTAAG 59.503 40.741 0.00 0.00 0.00 2.18
3433 3466 7.182930 ACATCTGGGTCCTAAATCTTTCTAAGT 59.817 37.037 0.00 0.00 0.00 2.24
3434 3467 7.569599 TCTGGGTCCTAAATCTTTCTAAGTT 57.430 36.000 0.00 0.00 0.00 2.66
3435 3468 7.394816 TCTGGGTCCTAAATCTTTCTAAGTTG 58.605 38.462 0.00 0.00 0.00 3.16
3436 3469 7.017254 TCTGGGTCCTAAATCTTTCTAAGTTGT 59.983 37.037 0.00 0.00 0.00 3.32
3437 3470 7.523415 TGGGTCCTAAATCTTTCTAAGTTGTT 58.477 34.615 0.00 0.00 0.00 2.83
3438 3471 7.664318 TGGGTCCTAAATCTTTCTAAGTTGTTC 59.336 37.037 0.00 0.00 0.00 3.18
3439 3472 7.664318 GGGTCCTAAATCTTTCTAAGTTGTTCA 59.336 37.037 0.00 0.00 0.00 3.18
3440 3473 8.504815 GGTCCTAAATCTTTCTAAGTTGTTCAC 58.495 37.037 0.00 0.00 0.00 3.18
3441 3474 8.504815 GTCCTAAATCTTTCTAAGTTGTTCACC 58.495 37.037 0.00 0.00 0.00 4.02
3442 3475 7.664318 TCCTAAATCTTTCTAAGTTGTTCACCC 59.336 37.037 0.00 0.00 0.00 4.61
3443 3476 5.941948 AATCTTTCTAAGTTGTTCACCCG 57.058 39.130 0.00 0.00 0.00 5.28
3444 3477 4.675976 TCTTTCTAAGTTGTTCACCCGA 57.324 40.909 0.00 0.00 0.00 5.14
3445 3478 4.628074 TCTTTCTAAGTTGTTCACCCGAG 58.372 43.478 0.00 0.00 0.00 4.63
3446 3479 3.396260 TTCTAAGTTGTTCACCCGAGG 57.604 47.619 0.00 0.00 0.00 4.63
3447 3480 2.322658 TCTAAGTTGTTCACCCGAGGT 58.677 47.619 0.00 0.00 35.62 3.85
3448 3481 2.298163 TCTAAGTTGTTCACCCGAGGTC 59.702 50.000 0.00 0.00 31.02 3.85
3449 3482 0.108019 AAGTTGTTCACCCGAGGTCC 59.892 55.000 0.00 0.00 31.02 4.46
3450 3483 0.763223 AGTTGTTCACCCGAGGTCCT 60.763 55.000 0.00 0.00 31.02 3.85
3451 3484 0.971386 GTTGTTCACCCGAGGTCCTA 59.029 55.000 0.00 0.00 31.02 2.94
3452 3485 1.345415 GTTGTTCACCCGAGGTCCTAA 59.655 52.381 0.00 0.00 31.02 2.69
3453 3486 1.946984 TGTTCACCCGAGGTCCTAAT 58.053 50.000 0.00 0.00 31.02 1.73
3454 3487 2.262637 TGTTCACCCGAGGTCCTAATT 58.737 47.619 0.00 0.00 31.02 1.40
3455 3488 2.640826 TGTTCACCCGAGGTCCTAATTT 59.359 45.455 0.00 0.00 31.02 1.82
3456 3489 3.268330 GTTCACCCGAGGTCCTAATTTC 58.732 50.000 0.00 0.00 31.02 2.17
3457 3490 1.479323 TCACCCGAGGTCCTAATTTCG 59.521 52.381 0.00 0.00 31.02 3.46
3458 3491 1.479323 CACCCGAGGTCCTAATTTCGA 59.521 52.381 0.00 0.00 35.19 3.71
3459 3492 1.479730 ACCCGAGGTCCTAATTTCGAC 59.520 52.381 0.00 0.00 35.19 4.20
3460 3493 1.755380 CCCGAGGTCCTAATTTCGACT 59.245 52.381 0.00 0.00 35.19 4.18
3461 3494 2.481449 CCCGAGGTCCTAATTTCGACTG 60.481 54.545 0.00 0.00 35.19 3.51
3462 3495 2.165845 CCGAGGTCCTAATTTCGACTGT 59.834 50.000 0.00 0.00 35.19 3.55
3463 3496 3.436496 CGAGGTCCTAATTTCGACTGTC 58.564 50.000 0.00 0.00 35.19 3.51
3464 3497 3.734293 CGAGGTCCTAATTTCGACTGTCC 60.734 52.174 1.55 0.00 35.19 4.02
3465 3498 2.165845 AGGTCCTAATTTCGACTGTCCG 59.834 50.000 1.55 0.00 0.00 4.79
3466 3499 1.925185 GTCCTAATTTCGACTGTCCGC 59.075 52.381 1.55 0.00 0.00 5.54
3467 3500 1.134907 TCCTAATTTCGACTGTCCGCC 60.135 52.381 1.55 0.00 0.00 6.13
3468 3501 0.921347 CTAATTTCGACTGTCCGCCG 59.079 55.000 1.55 0.00 0.00 6.46
3469 3502 1.079875 TAATTTCGACTGTCCGCCGC 61.080 55.000 1.55 0.00 0.00 6.53
3470 3503 2.781595 AATTTCGACTGTCCGCCGCT 62.782 55.000 1.55 0.00 0.00 5.52
3471 3504 4.717629 TTCGACTGTCCGCCGCTG 62.718 66.667 1.55 0.00 0.00 5.18
3498 3531 3.645975 CGTGGCGCTTTGACCGTT 61.646 61.111 7.64 0.00 0.00 4.44
3499 3532 2.051345 GTGGCGCTTTGACCGTTG 60.051 61.111 7.64 0.00 0.00 4.10
3500 3533 3.959975 TGGCGCTTTGACCGTTGC 61.960 61.111 7.64 0.00 0.00 4.17
3501 3534 4.700365 GGCGCTTTGACCGTTGCC 62.700 66.667 7.64 0.00 35.04 4.52
3502 3535 3.959975 GCGCTTTGACCGTTGCCA 61.960 61.111 0.00 0.00 0.00 4.92
3503 3536 2.051345 CGCTTTGACCGTTGCCAC 60.051 61.111 0.00 0.00 0.00 5.01
3504 3537 2.051345 GCTTTGACCGTTGCCACG 60.051 61.111 2.82 2.82 46.71 4.94
3505 3538 2.830285 GCTTTGACCGTTGCCACGT 61.830 57.895 9.67 0.00 45.62 4.49
3506 3539 1.278637 CTTTGACCGTTGCCACGTC 59.721 57.895 9.67 7.60 45.62 4.34
3507 3540 2.424576 CTTTGACCGTTGCCACGTCG 62.425 60.000 9.67 0.00 45.62 5.12
3508 3541 2.902759 TTTGACCGTTGCCACGTCGA 62.903 55.000 9.67 4.50 45.62 4.20
3509 3542 3.400590 GACCGTTGCCACGTCGAC 61.401 66.667 9.67 5.18 45.62 4.20
3510 3543 3.836176 GACCGTTGCCACGTCGACT 62.836 63.158 14.70 0.00 45.62 4.18
3511 3544 3.103911 CCGTTGCCACGTCGACTC 61.104 66.667 14.70 0.68 45.62 3.36
3512 3545 3.458579 CGTTGCCACGTCGACTCG 61.459 66.667 14.70 3.66 41.84 4.18
3513 3546 2.050714 GTTGCCACGTCGACTCGA 60.051 61.111 14.70 0.00 34.70 4.04
3514 3547 2.081212 GTTGCCACGTCGACTCGAG 61.081 63.158 14.70 11.84 36.23 4.04
3515 3548 3.263503 TTGCCACGTCGACTCGAGG 62.264 63.158 18.41 17.42 45.39 4.63
3516 3549 4.477975 GCCACGTCGACTCGAGGG 62.478 72.222 21.64 15.00 44.42 4.30
3517 3550 4.477975 CCACGTCGACTCGAGGGC 62.478 72.222 21.64 7.44 44.42 5.19
3518 3551 4.477975 CACGTCGACTCGAGGGCC 62.478 72.222 21.64 0.00 44.42 5.80
3521 3554 4.131088 GTCGACTCGAGGGCCCAC 62.131 72.222 27.56 18.56 36.23 4.61
3535 3568 2.584143 CCACGCGGGATAACGACC 60.584 66.667 11.66 0.00 40.01 4.79
3536 3569 2.182284 CACGCGGGATAACGACCA 59.818 61.111 12.47 0.00 35.47 4.02
3537 3570 1.876714 CACGCGGGATAACGACCAG 60.877 63.158 12.47 0.00 35.47 4.00
3538 3571 2.960129 CGCGGGATAACGACCAGC 60.960 66.667 0.00 0.00 43.16 4.85
3539 3572 2.588034 GCGGGATAACGACCAGCC 60.588 66.667 0.00 0.00 41.38 4.85
3540 3573 2.279252 CGGGATAACGACCAGCCG 60.279 66.667 0.00 0.00 35.47 5.52
3541 3574 2.897972 GGGATAACGACCAGCCGT 59.102 61.111 0.00 0.00 45.64 5.68
3542 3575 1.520787 GGGATAACGACCAGCCGTG 60.521 63.158 0.00 0.00 42.54 4.94
3543 3576 2.171725 GGATAACGACCAGCCGTGC 61.172 63.158 0.00 0.00 42.54 5.34
3544 3577 1.447140 GATAACGACCAGCCGTGCA 60.447 57.895 0.00 0.00 42.54 4.57
3545 3578 0.810031 GATAACGACCAGCCGTGCAT 60.810 55.000 0.00 0.00 42.54 3.96
3546 3579 0.392461 ATAACGACCAGCCGTGCATT 60.392 50.000 0.00 0.00 42.54 3.56
3547 3580 0.604243 TAACGACCAGCCGTGCATTT 60.604 50.000 0.00 0.00 42.54 2.32
3548 3581 1.452145 AACGACCAGCCGTGCATTTT 61.452 50.000 0.00 0.00 42.54 1.82
3549 3582 1.285641 CGACCAGCCGTGCATTTTT 59.714 52.632 0.00 0.00 0.00 1.94
3579 3612 1.141185 CCCCCAACCCTAATCTCTCC 58.859 60.000 0.00 0.00 0.00 3.71
3580 3613 1.628043 CCCCCAACCCTAATCTCTCCA 60.628 57.143 0.00 0.00 0.00 3.86
3581 3614 1.490910 CCCCAACCCTAATCTCTCCAC 59.509 57.143 0.00 0.00 0.00 4.02
3582 3615 2.196595 CCCAACCCTAATCTCTCCACA 58.803 52.381 0.00 0.00 0.00 4.17
3583 3616 2.171448 CCCAACCCTAATCTCTCCACAG 59.829 54.545 0.00 0.00 0.00 3.66
3584 3617 2.420687 CCAACCCTAATCTCTCCACAGC 60.421 54.545 0.00 0.00 0.00 4.40
3585 3618 1.501582 ACCCTAATCTCTCCACAGCC 58.498 55.000 0.00 0.00 0.00 4.85
3586 3619 0.390860 CCCTAATCTCTCCACAGCCG 59.609 60.000 0.00 0.00 0.00 5.52
3587 3620 1.115467 CCTAATCTCTCCACAGCCGT 58.885 55.000 0.00 0.00 0.00 5.68
3588 3621 2.307768 CCTAATCTCTCCACAGCCGTA 58.692 52.381 0.00 0.00 0.00 4.02
3589 3622 2.294791 CCTAATCTCTCCACAGCCGTAG 59.705 54.545 0.00 0.00 0.00 3.51
3590 3623 1.853963 AATCTCTCCACAGCCGTAGT 58.146 50.000 0.00 0.00 0.00 2.73
3591 3624 1.394618 ATCTCTCCACAGCCGTAGTC 58.605 55.000 0.00 0.00 0.00 2.59
3592 3625 0.680280 TCTCTCCACAGCCGTAGTCC 60.680 60.000 0.00 0.00 0.00 3.85
3593 3626 0.681564 CTCTCCACAGCCGTAGTCCT 60.682 60.000 0.00 0.00 0.00 3.85
3594 3627 0.251653 TCTCCACAGCCGTAGTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
3595 3628 0.608640 CTCCACAGCCGTAGTCCTTT 59.391 55.000 0.00 0.00 0.00 3.11
3596 3629 0.606604 TCCACAGCCGTAGTCCTTTC 59.393 55.000 0.00 0.00 0.00 2.62
3597 3630 0.391263 CCACAGCCGTAGTCCTTTCC 60.391 60.000 0.00 0.00 0.00 3.13
3598 3631 0.608640 CACAGCCGTAGTCCTTTCCT 59.391 55.000 0.00 0.00 0.00 3.36
3599 3632 0.896226 ACAGCCGTAGTCCTTTCCTC 59.104 55.000 0.00 0.00 0.00 3.71
3600 3633 1.187087 CAGCCGTAGTCCTTTCCTCT 58.813 55.000 0.00 0.00 0.00 3.69
3601 3634 1.135333 CAGCCGTAGTCCTTTCCTCTC 59.865 57.143 0.00 0.00 0.00 3.20
3602 3635 0.460722 GCCGTAGTCCTTTCCTCTCC 59.539 60.000 0.00 0.00 0.00 3.71
3603 3636 1.960953 GCCGTAGTCCTTTCCTCTCCT 60.961 57.143 0.00 0.00 0.00 3.69
3604 3637 2.025898 CCGTAGTCCTTTCCTCTCCTC 58.974 57.143 0.00 0.00 0.00 3.71
3605 3638 2.357361 CCGTAGTCCTTTCCTCTCCTCT 60.357 54.545 0.00 0.00 0.00 3.69
3606 3639 3.358118 CGTAGTCCTTTCCTCTCCTCTT 58.642 50.000 0.00 0.00 0.00 2.85
3607 3640 3.379057 CGTAGTCCTTTCCTCTCCTCTTC 59.621 52.174 0.00 0.00 0.00 2.87
3608 3641 2.827755 AGTCCTTTCCTCTCCTCTTCC 58.172 52.381 0.00 0.00 0.00 3.46
3609 3642 1.834896 GTCCTTTCCTCTCCTCTTCCC 59.165 57.143 0.00 0.00 0.00 3.97
3610 3643 1.208706 CCTTTCCTCTCCTCTTCCCC 58.791 60.000 0.00 0.00 0.00 4.81
3611 3644 1.555765 CCTTTCCTCTCCTCTTCCCCA 60.556 57.143 0.00 0.00 0.00 4.96
3612 3645 1.557371 CTTTCCTCTCCTCTTCCCCAC 59.443 57.143 0.00 0.00 0.00 4.61
3613 3646 0.252742 TTCCTCTCCTCTTCCCCACC 60.253 60.000 0.00 0.00 0.00 4.61
3614 3647 1.156322 TCCTCTCCTCTTCCCCACCT 61.156 60.000 0.00 0.00 0.00 4.00
3615 3648 0.689412 CCTCTCCTCTTCCCCACCTC 60.689 65.000 0.00 0.00 0.00 3.85
3616 3649 0.338120 CTCTCCTCTTCCCCACCTCT 59.662 60.000 0.00 0.00 0.00 3.69
3617 3650 0.336737 TCTCCTCTTCCCCACCTCTC 59.663 60.000 0.00 0.00 0.00 3.20
3618 3651 0.338120 CTCCTCTTCCCCACCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
3619 3652 0.336737 TCCTCTTCCCCACCTCTCTC 59.663 60.000 0.00 0.00 0.00 3.20
3620 3653 0.338120 CCTCTTCCCCACCTCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
3621 3654 1.484038 CTCTTCCCCACCTCTCTCTG 58.516 60.000 0.00 0.00 0.00 3.35
3622 3655 0.616111 TCTTCCCCACCTCTCTCTGC 60.616 60.000 0.00 0.00 0.00 4.26
3623 3656 0.617249 CTTCCCCACCTCTCTCTGCT 60.617 60.000 0.00 0.00 0.00 4.24
3624 3657 0.616111 TTCCCCACCTCTCTCTGCTC 60.616 60.000 0.00 0.00 0.00 4.26
3625 3658 1.001503 CCCCACCTCTCTCTGCTCT 59.998 63.158 0.00 0.00 0.00 4.09
3626 3659 1.329171 CCCCACCTCTCTCTGCTCTG 61.329 65.000 0.00 0.00 0.00 3.35
3627 3660 1.329171 CCCACCTCTCTCTGCTCTGG 61.329 65.000 0.00 0.00 0.00 3.86
3628 3661 1.516892 CACCTCTCTCTGCTCTGGC 59.483 63.158 0.00 0.00 39.26 4.85
3629 3662 2.051518 ACCTCTCTCTGCTCTGGCG 61.052 63.158 0.00 0.00 42.25 5.69
3630 3663 1.752310 CCTCTCTCTGCTCTGGCGA 60.752 63.158 0.00 0.00 42.25 5.54
3631 3664 1.318886 CCTCTCTCTGCTCTGGCGAA 61.319 60.000 0.00 0.00 42.25 4.70
3632 3665 0.529833 CTCTCTCTGCTCTGGCGAAA 59.470 55.000 0.00 0.00 42.25 3.46
3633 3666 0.244994 TCTCTCTGCTCTGGCGAAAC 59.755 55.000 0.00 0.00 42.25 2.78
3634 3667 0.037882 CTCTCTGCTCTGGCGAAACA 60.038 55.000 0.00 0.00 42.25 2.83
3635 3668 0.037882 TCTCTGCTCTGGCGAAACAG 60.038 55.000 0.00 0.00 42.25 3.16
3636 3669 1.004560 TCTGCTCTGGCGAAACAGG 60.005 57.895 0.00 0.00 42.25 4.00
3637 3670 2.032528 TGCTCTGGCGAAACAGGG 59.967 61.111 0.00 0.00 41.97 4.45
3638 3671 2.747855 GCTCTGGCGAAACAGGGG 60.748 66.667 4.59 0.18 39.40 4.79
3639 3672 3.068881 CTCTGGCGAAACAGGGGA 58.931 61.111 0.00 0.00 38.98 4.81
3640 3673 1.078848 CTCTGGCGAAACAGGGGAG 60.079 63.158 0.00 0.00 38.98 4.30
3641 3674 1.535444 TCTGGCGAAACAGGGGAGA 60.535 57.895 0.00 0.00 38.98 3.71
3642 3675 0.909610 TCTGGCGAAACAGGGGAGAT 60.910 55.000 0.00 0.00 38.98 2.75
3643 3676 0.462759 CTGGCGAAACAGGGGAGATC 60.463 60.000 0.00 0.00 34.84 2.75
3644 3677 1.521681 GGCGAAACAGGGGAGATCG 60.522 63.158 0.00 0.00 36.64 3.69
3645 3678 1.515954 GCGAAACAGGGGAGATCGA 59.484 57.895 0.00 0.00 35.65 3.59
3646 3679 0.806492 GCGAAACAGGGGAGATCGAC 60.806 60.000 0.00 0.00 35.65 4.20
3647 3680 0.525668 CGAAACAGGGGAGATCGACG 60.526 60.000 0.00 0.00 35.65 5.12
3648 3681 0.179108 GAAACAGGGGAGATCGACGG 60.179 60.000 0.00 0.00 0.00 4.79
3649 3682 2.240162 AAACAGGGGAGATCGACGGC 62.240 60.000 0.00 0.00 0.00 5.68
3650 3683 4.271816 CAGGGGAGATCGACGGCG 62.272 72.222 2.87 2.87 39.35 6.46
3667 3700 3.379445 GGCGGTCCGGTGAGAAGA 61.379 66.667 14.38 0.00 0.00 2.87
3668 3701 2.182030 GCGGTCCGGTGAGAAGAG 59.818 66.667 14.38 0.00 0.00 2.85
3669 3702 2.885861 CGGTCCGGTGAGAAGAGG 59.114 66.667 2.34 0.00 0.00 3.69
3670 3703 2.579738 GGTCCGGTGAGAAGAGGC 59.420 66.667 0.00 0.00 0.00 4.70
3671 3704 2.283529 GGTCCGGTGAGAAGAGGCA 61.284 63.158 0.00 0.00 0.00 4.75
3672 3705 1.216710 GTCCGGTGAGAAGAGGCAG 59.783 63.158 0.00 0.00 0.00 4.85
3673 3706 1.984570 TCCGGTGAGAAGAGGCAGG 60.985 63.158 0.00 0.00 0.00 4.85
3674 3707 2.125350 CGGTGAGAAGAGGCAGGC 60.125 66.667 0.00 0.00 0.00 4.85
3675 3708 2.125350 GGTGAGAAGAGGCAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
3676 3709 2.125350 GTGAGAAGAGGCAGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
3677 3710 4.087892 TGAGAAGAGGCAGGCGGC 62.088 66.667 0.00 0.00 43.74 6.53
3693 3726 2.511600 GCCATCGTAGGCGCTTGT 60.512 61.111 7.64 0.00 46.12 3.16
3694 3727 2.526120 GCCATCGTAGGCGCTTGTC 61.526 63.158 7.64 0.00 46.12 3.18
3695 3728 1.883084 CCATCGTAGGCGCTTGTCC 60.883 63.158 7.64 0.00 38.14 4.02
3696 3729 2.104331 ATCGTAGGCGCTTGTCCG 59.896 61.111 7.64 4.44 38.14 4.79
3697 3730 3.426117 ATCGTAGGCGCTTGTCCGG 62.426 63.158 7.64 0.00 38.14 5.14
3740 3773 4.451150 GTGCATCGGCGACCTGGA 62.451 66.667 13.76 6.09 45.35 3.86
3741 3774 4.147449 TGCATCGGCGACCTGGAG 62.147 66.667 13.76 0.00 45.35 3.86
3742 3775 3.838271 GCATCGGCGACCTGGAGA 61.838 66.667 13.76 0.00 0.00 3.71
3743 3776 3.133014 CATCGGCGACCTGGAGAT 58.867 61.111 13.76 0.00 0.00 2.75
3744 3777 1.006805 CATCGGCGACCTGGAGATC 60.007 63.158 13.76 0.00 0.00 2.75
3745 3778 2.203771 ATCGGCGACCTGGAGATCC 61.204 63.158 13.76 0.00 0.00 3.36
3746 3779 2.648613 ATCGGCGACCTGGAGATCCT 62.649 60.000 13.76 0.00 36.82 3.24
3747 3780 2.851071 CGGCGACCTGGAGATCCTC 61.851 68.421 0.00 0.00 36.82 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.739338 AGCCACCGATGGATCTCGAC 61.739 60.000 0.00 0.00 42.56 4.20
55 56 3.083997 GGTCTGGGAGCCACCGAT 61.084 66.667 0.00 0.00 40.11 4.18
114 115 0.882042 GCGGCGAAGATGATGTCCAT 60.882 55.000 12.98 0.00 38.43 3.41
136 137 1.170919 GGCGATAGAGACGTGGCCTA 61.171 60.000 3.32 0.00 36.44 3.93
138 139 2.027751 GGCGATAGAGACGTGGCC 59.972 66.667 0.00 0.00 39.76 5.36
142 143 2.883468 CGAGCGGCGATAGAGACGT 61.883 63.158 12.98 0.00 44.57 4.34
195 196 0.103208 CGAGAGGTAAGCTGCCGATT 59.897 55.000 0.00 0.00 0.00 3.34
223 224 7.015487 CCTTATCCATTCACTCATCTTCTCTCT 59.985 40.741 0.00 0.00 0.00 3.10
299 301 1.547372 ACCCATCAGATGCAACAAAGC 59.453 47.619 4.68 0.00 0.00 3.51
315 317 2.189257 CGCGATCCCATTGACCCA 59.811 61.111 0.00 0.00 0.00 4.51
317 319 3.640000 CGCGCGATCCCATTGACC 61.640 66.667 28.94 0.00 0.00 4.02
325 327 1.145759 TCAATCTTGACGCGCGATCC 61.146 55.000 39.36 23.91 31.01 3.36
388 390 8.887717 ACATAATTATCAGAACTGTCAGCTTTC 58.112 33.333 0.00 0.00 0.00 2.62
390 392 9.539825 CTACATAATTATCAGAACTGTCAGCTT 57.460 33.333 0.00 0.00 0.00 3.74
392 394 8.973378 GTCTACATAATTATCAGAACTGTCAGC 58.027 37.037 0.00 0.00 0.00 4.26
399 401 7.873505 GGACCAGGTCTACATAATTATCAGAAC 59.126 40.741 19.57 11.39 32.47 3.01
402 404 7.015682 AGTGGACCAGGTCTACATAATTATCAG 59.984 40.741 31.67 0.00 44.58 2.90
411 413 2.623418 TCAGTGGACCAGGTCTACAT 57.377 50.000 31.67 17.40 44.58 2.29
413 415 2.567615 ACATTCAGTGGACCAGGTCTAC 59.432 50.000 25.24 25.24 42.92 2.59
553 555 1.153524 TGCTTGGGCCAATGAGTGT 59.846 52.632 21.25 0.00 37.74 3.55
559 561 0.542467 TGTGATGTGCTTGGGCCAAT 60.542 50.000 21.25 3.78 37.74 3.16
689 692 9.120422 CACCGTCGCTTACTTTTTATTTATTTT 57.880 29.630 0.00 0.00 0.00 1.82
712 715 1.664333 CAAATGCCGGCACAACACC 60.664 57.895 35.50 0.00 0.00 4.16
902 906 1.620819 GTGAGACCTGAGTGACACCAT 59.379 52.381 0.84 0.00 0.00 3.55
904 908 1.000283 CTGTGAGACCTGAGTGACACC 60.000 57.143 0.84 0.00 31.59 4.16
1175 1179 2.488153 CCAATCCGAGGAAAAGAACACC 59.512 50.000 0.00 0.00 0.00 4.16
1201 1206 3.181445 TGAGCAAACCATACTGTCCAAGT 60.181 43.478 0.00 0.00 43.40 3.16
1358 1363 2.762535 TTTTACCTTCGGAGAGCCAG 57.237 50.000 0.00 0.00 38.43 4.85
1593 1601 1.134007 CAGCCTGACCATGAATAGCCA 60.134 52.381 0.00 0.00 0.00 4.75
1606 1614 3.423539 ACTGCACTTATTTCAGCCTGA 57.576 42.857 0.00 0.00 0.00 3.86
1667 1676 1.608717 CTGGCCACTCGCTTCCTACT 61.609 60.000 0.00 0.00 37.74 2.57
1670 1679 2.925170 ACTGGCCACTCGCTTCCT 60.925 61.111 0.00 0.00 37.74 3.36
1715 1724 2.234908 CCCAAAACAAGGACACACCAAA 59.765 45.455 0.00 0.00 42.04 3.28
1746 1755 7.360101 GCAACAACGATAAAGTAGTGAATGTCT 60.360 37.037 0.00 0.00 0.00 3.41
1748 1757 6.426937 AGCAACAACGATAAAGTAGTGAATGT 59.573 34.615 0.00 0.00 0.00 2.71
1782 1791 6.312918 GCCACTTTGATTATTCTAGTCACGAA 59.687 38.462 0.00 0.00 0.00 3.85
1783 1792 5.810587 GCCACTTTGATTATTCTAGTCACGA 59.189 40.000 0.00 0.00 0.00 4.35
1784 1793 5.006746 GGCCACTTTGATTATTCTAGTCACG 59.993 44.000 0.00 0.00 0.00 4.35
1785 1794 5.297029 GGGCCACTTTGATTATTCTAGTCAC 59.703 44.000 4.39 0.00 0.00 3.67
1786 1795 5.045213 TGGGCCACTTTGATTATTCTAGTCA 60.045 40.000 0.00 0.00 0.00 3.41
1787 1796 5.437060 TGGGCCACTTTGATTATTCTAGTC 58.563 41.667 0.00 0.00 0.00 2.59
1788 1797 5.450818 TGGGCCACTTTGATTATTCTAGT 57.549 39.130 0.00 0.00 0.00 2.57
1789 1798 6.773976 TTTGGGCCACTTTGATTATTCTAG 57.226 37.500 5.23 0.00 0.00 2.43
1790 1799 6.406849 GCATTTGGGCCACTTTGATTATTCTA 60.407 38.462 5.23 0.00 0.00 2.10
1791 1800 5.627503 GCATTTGGGCCACTTTGATTATTCT 60.628 40.000 5.23 0.00 0.00 2.40
1792 1801 4.571984 GCATTTGGGCCACTTTGATTATTC 59.428 41.667 5.23 0.00 0.00 1.75
1793 1802 4.019501 TGCATTTGGGCCACTTTGATTATT 60.020 37.500 5.23 0.00 0.00 1.40
1794 1803 3.518705 TGCATTTGGGCCACTTTGATTAT 59.481 39.130 5.23 0.00 0.00 1.28
1795 1804 2.902486 TGCATTTGGGCCACTTTGATTA 59.098 40.909 5.23 0.00 0.00 1.75
1796 1805 1.698532 TGCATTTGGGCCACTTTGATT 59.301 42.857 5.23 0.00 0.00 2.57
1797 1806 1.350071 TGCATTTGGGCCACTTTGAT 58.650 45.000 5.23 0.00 0.00 2.57
1798 1807 1.002201 CATGCATTTGGGCCACTTTGA 59.998 47.619 5.23 0.00 0.00 2.69
1799 1808 1.444836 CATGCATTTGGGCCACTTTG 58.555 50.000 5.23 5.35 0.00 2.77
1800 1809 0.321830 GCATGCATTTGGGCCACTTT 60.322 50.000 14.21 0.00 0.00 2.66
1801 1810 1.297364 GCATGCATTTGGGCCACTT 59.703 52.632 14.21 0.00 0.00 3.16
1802 1811 2.662070 GGCATGCATTTGGGCCACT 61.662 57.895 21.36 0.00 45.70 4.00
1803 1812 2.125024 GGCATGCATTTGGGCCAC 60.125 61.111 21.36 0.00 45.70 5.01
1805 1814 4.179588 GGGGCATGCATTTGGGCC 62.180 66.667 21.36 17.12 45.67 5.80
1806 1815 1.123246 ATAGGGGCATGCATTTGGGC 61.123 55.000 21.36 0.00 0.00 5.36
1807 1816 0.682852 CATAGGGGCATGCATTTGGG 59.317 55.000 21.36 0.29 0.00 4.12
1879 1888 5.070580 AGGAACGGAGGGAGTAGATAATTTG 59.929 44.000 0.00 0.00 0.00 2.32
1890 1899 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1891 1900 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1892 1901 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1893 1902 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1978 1987 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
2038 2047 5.585047 AGAACATAACAATTACTTCCTCCGC 59.415 40.000 0.00 0.00 0.00 5.54
2071 2080 2.959707 CCATACGCTAAGAGGAAGGAGT 59.040 50.000 0.00 0.00 0.00 3.85
2116 2125 9.528018 CAAAAGGAGAAAGCAGTTAACAAAATA 57.472 29.630 8.61 0.00 0.00 1.40
2608 2627 5.280317 CCAACTACCAAGGTACAGTGGTAAT 60.280 44.000 21.09 13.02 46.02 1.89
2621 2640 2.568623 ACAGAAGGCCAACTACCAAG 57.431 50.000 5.01 0.00 0.00 3.61
2701 2720 6.496565 TGCAAATGAGAGGGAAAATAAAAGGA 59.503 34.615 0.00 0.00 0.00 3.36
2707 2726 6.493115 TGAAGTTGCAAATGAGAGGGAAAATA 59.507 34.615 0.00 0.00 0.00 1.40
2708 2727 5.305128 TGAAGTTGCAAATGAGAGGGAAAAT 59.695 36.000 0.00 0.00 0.00 1.82
2988 3007 6.572621 CGAAGAATCATAAAATGCATCAGACG 59.427 38.462 0.00 0.00 0.00 4.18
2989 3008 6.359087 GCGAAGAATCATAAAATGCATCAGAC 59.641 38.462 0.00 0.00 0.00 3.51
3043 3062 3.764885 AACTGCCGTTATGAATTGAGC 57.235 42.857 0.00 0.00 0.00 4.26
3065 3084 4.577693 TGCATCACTTTCCATTGAGCTATC 59.422 41.667 0.00 0.00 0.00 2.08
3086 3105 2.658373 TCATGCAAATGATGTGGTGC 57.342 45.000 0.00 0.00 37.51 5.01
3135 3154 5.455392 GCATATCCACTGGAAATCAAATCG 58.545 41.667 0.66 0.00 34.34 3.34
3223 3256 1.863662 CGTGGGCACAGAGTAGACGT 61.864 60.000 0.00 0.00 0.00 4.34
3224 3257 1.154016 CGTGGGCACAGAGTAGACG 60.154 63.158 0.00 0.00 0.00 4.18
3255 3288 7.156876 TGTAACCCACATTTCATTGATCTTC 57.843 36.000 0.00 0.00 30.04 2.87
3337 3370 0.168128 ACCGCGCTTGCATTTTACTC 59.832 50.000 5.56 0.00 39.07 2.59
3338 3371 0.168128 GACCGCGCTTGCATTTTACT 59.832 50.000 5.56 0.00 39.07 2.24
3339 3372 0.796870 GGACCGCGCTTGCATTTTAC 60.797 55.000 5.56 0.00 39.07 2.01
3340 3373 0.958382 AGGACCGCGCTTGCATTTTA 60.958 50.000 5.56 0.00 39.07 1.52
3341 3374 0.958382 TAGGACCGCGCTTGCATTTT 60.958 50.000 5.56 0.00 39.07 1.82
3342 3375 0.958382 TTAGGACCGCGCTTGCATTT 60.958 50.000 5.56 0.00 39.07 2.32
3343 3376 0.748005 ATTAGGACCGCGCTTGCATT 60.748 50.000 5.56 0.00 39.07 3.56
3344 3377 0.748005 AATTAGGACCGCGCTTGCAT 60.748 50.000 5.56 0.00 39.07 3.96
3345 3378 1.366111 GAATTAGGACCGCGCTTGCA 61.366 55.000 5.56 0.00 39.07 4.08
3346 3379 1.090052 AGAATTAGGACCGCGCTTGC 61.090 55.000 5.56 0.00 0.00 4.01
3347 3380 1.369625 AAGAATTAGGACCGCGCTTG 58.630 50.000 5.56 0.00 0.00 4.01
3348 3381 2.007608 GAAAGAATTAGGACCGCGCTT 58.992 47.619 5.56 0.00 0.00 4.68
3349 3382 1.653151 GAAAGAATTAGGACCGCGCT 58.347 50.000 5.56 0.00 0.00 5.92
3350 3383 0.656259 GGAAAGAATTAGGACCGCGC 59.344 55.000 0.00 0.00 0.00 6.86
3351 3384 1.296727 GGGAAAGAATTAGGACCGCG 58.703 55.000 0.00 0.00 0.00 6.46
3352 3385 2.413310 TGGGAAAGAATTAGGACCGC 57.587 50.000 0.00 0.00 0.00 5.68
3353 3386 4.765339 ACTTTTGGGAAAGAATTAGGACCG 59.235 41.667 5.95 0.00 44.03 4.79
3354 3387 5.538813 ACACTTTTGGGAAAGAATTAGGACC 59.461 40.000 5.95 0.00 44.03 4.46
3355 3388 6.567891 CGACACTTTTGGGAAAGAATTAGGAC 60.568 42.308 5.95 0.00 44.03 3.85
3356 3389 5.472137 CGACACTTTTGGGAAAGAATTAGGA 59.528 40.000 5.95 0.00 44.03 2.94
3357 3390 5.472137 TCGACACTTTTGGGAAAGAATTAGG 59.528 40.000 5.95 0.00 44.03 2.69
3358 3391 6.204882 AGTCGACACTTTTGGGAAAGAATTAG 59.795 38.462 19.50 0.00 44.03 1.73
3359 3392 6.017440 CAGTCGACACTTTTGGGAAAGAATTA 60.017 38.462 19.50 0.00 44.03 1.40
3360 3393 4.887655 AGTCGACACTTTTGGGAAAGAATT 59.112 37.500 19.50 0.00 44.03 2.17
3361 3394 4.275936 CAGTCGACACTTTTGGGAAAGAAT 59.724 41.667 19.50 0.00 44.03 2.40
3362 3395 3.625764 CAGTCGACACTTTTGGGAAAGAA 59.374 43.478 19.50 0.00 44.03 2.52
3363 3396 3.202906 CAGTCGACACTTTTGGGAAAGA 58.797 45.455 19.50 0.00 44.03 2.52
3364 3397 2.290641 CCAGTCGACACTTTTGGGAAAG 59.709 50.000 19.50 0.00 46.17 2.62
3365 3398 2.294074 CCAGTCGACACTTTTGGGAAA 58.706 47.619 19.50 0.00 0.00 3.13
3366 3399 1.961793 CCAGTCGACACTTTTGGGAA 58.038 50.000 19.50 0.00 0.00 3.97
3367 3400 3.698250 CCAGTCGACACTTTTGGGA 57.302 52.632 19.50 0.00 0.00 4.37
3368 3401 2.629002 CCCAGTCGACACTTTTGGG 58.371 57.895 21.44 21.44 42.26 4.12
3369 3402 1.226746 GACCCAGTCGACACTTTTGG 58.773 55.000 19.50 15.57 0.00 3.28
3370 3403 1.202651 AGGACCCAGTCGACACTTTTG 60.203 52.381 19.50 6.55 32.65 2.44
3371 3404 1.129058 AGGACCCAGTCGACACTTTT 58.871 50.000 19.50 0.00 32.65 2.27
3372 3405 2.005370 TAGGACCCAGTCGACACTTT 57.995 50.000 19.50 0.00 32.65 2.66
3373 3406 2.005370 TTAGGACCCAGTCGACACTT 57.995 50.000 19.50 0.00 32.65 3.16
3374 3407 2.233305 ATTAGGACCCAGTCGACACT 57.767 50.000 19.50 8.05 32.65 3.55
3375 3408 2.496470 AGAATTAGGACCCAGTCGACAC 59.504 50.000 19.50 3.45 32.65 3.67
3376 3409 2.816411 AGAATTAGGACCCAGTCGACA 58.184 47.619 19.50 0.00 32.65 4.35
3377 3410 3.889520 AAGAATTAGGACCCAGTCGAC 57.110 47.619 7.70 7.70 32.65 4.20
3378 3411 3.835978 TGAAAGAATTAGGACCCAGTCGA 59.164 43.478 0.00 0.00 32.65 4.20
3379 3412 4.202245 TGAAAGAATTAGGACCCAGTCG 57.798 45.455 0.00 0.00 32.65 4.18
3380 3413 6.894339 TTTTGAAAGAATTAGGACCCAGTC 57.106 37.500 0.00 0.00 0.00 3.51
3381 3414 6.295292 GCATTTTGAAAGAATTAGGACCCAGT 60.295 38.462 0.00 0.00 0.00 4.00
3382 3415 6.101997 GCATTTTGAAAGAATTAGGACCCAG 58.898 40.000 0.00 0.00 0.00 4.45
3383 3416 5.541868 TGCATTTTGAAAGAATTAGGACCCA 59.458 36.000 0.00 0.00 0.00 4.51
3384 3417 5.869344 GTGCATTTTGAAAGAATTAGGACCC 59.131 40.000 0.00 0.00 0.00 4.46
3385 3418 6.454795 TGTGCATTTTGAAAGAATTAGGACC 58.545 36.000 0.00 0.00 0.00 4.46
3386 3419 8.031277 AGATGTGCATTTTGAAAGAATTAGGAC 58.969 33.333 0.00 0.00 0.00 3.85
3387 3420 8.030692 CAGATGTGCATTTTGAAAGAATTAGGA 58.969 33.333 0.00 0.00 0.00 2.94
3388 3421 7.277098 CCAGATGTGCATTTTGAAAGAATTAGG 59.723 37.037 0.00 0.00 0.00 2.69
3389 3422 7.277098 CCCAGATGTGCATTTTGAAAGAATTAG 59.723 37.037 0.00 0.00 0.00 1.73
3390 3423 7.098477 CCCAGATGTGCATTTTGAAAGAATTA 58.902 34.615 0.00 0.00 0.00 1.40
3391 3424 5.935789 CCCAGATGTGCATTTTGAAAGAATT 59.064 36.000 0.00 0.00 0.00 2.17
3392 3425 5.012354 ACCCAGATGTGCATTTTGAAAGAAT 59.988 36.000 0.00 0.00 0.00 2.40
3393 3426 4.344679 ACCCAGATGTGCATTTTGAAAGAA 59.655 37.500 0.00 0.00 0.00 2.52
3394 3427 3.896888 ACCCAGATGTGCATTTTGAAAGA 59.103 39.130 0.00 0.00 0.00 2.52
3395 3428 4.240096 GACCCAGATGTGCATTTTGAAAG 58.760 43.478 0.00 0.00 0.00 2.62
3396 3429 3.006752 GGACCCAGATGTGCATTTTGAAA 59.993 43.478 0.00 0.00 0.00 2.69
3397 3430 2.562298 GGACCCAGATGTGCATTTTGAA 59.438 45.455 0.00 0.00 0.00 2.69
3398 3431 2.170166 GGACCCAGATGTGCATTTTGA 58.830 47.619 0.00 0.00 0.00 2.69
3399 3432 2.173519 AGGACCCAGATGTGCATTTTG 58.826 47.619 0.00 0.00 0.00 2.44
3400 3433 2.610438 AGGACCCAGATGTGCATTTT 57.390 45.000 0.00 0.00 0.00 1.82
3401 3434 3.737559 TTAGGACCCAGATGTGCATTT 57.262 42.857 0.00 0.00 0.00 2.32
3402 3435 3.737559 TTTAGGACCCAGATGTGCATT 57.262 42.857 0.00 0.00 0.00 3.56
3403 3436 3.461085 AGATTTAGGACCCAGATGTGCAT 59.539 43.478 0.00 0.00 0.00 3.96
3404 3437 2.846206 AGATTTAGGACCCAGATGTGCA 59.154 45.455 0.00 0.00 0.00 4.57
3405 3438 3.567478 AGATTTAGGACCCAGATGTGC 57.433 47.619 0.00 0.00 0.00 4.57
3406 3439 5.749462 AGAAAGATTTAGGACCCAGATGTG 58.251 41.667 0.00 0.00 0.00 3.21
3407 3440 7.182930 ACTTAGAAAGATTTAGGACCCAGATGT 59.817 37.037 0.00 0.00 0.00 3.06
3408 3441 7.569240 ACTTAGAAAGATTTAGGACCCAGATG 58.431 38.462 0.00 0.00 0.00 2.90
3409 3442 7.757242 ACTTAGAAAGATTTAGGACCCAGAT 57.243 36.000 0.00 0.00 0.00 2.90
3410 3443 7.017254 ACAACTTAGAAAGATTTAGGACCCAGA 59.983 37.037 0.00 0.00 0.00 3.86
3411 3444 7.168905 ACAACTTAGAAAGATTTAGGACCCAG 58.831 38.462 0.00 0.00 0.00 4.45
3412 3445 7.086685 ACAACTTAGAAAGATTTAGGACCCA 57.913 36.000 0.00 0.00 0.00 4.51
3413 3446 7.664318 TGAACAACTTAGAAAGATTTAGGACCC 59.336 37.037 0.00 0.00 0.00 4.46
3414 3447 8.504815 GTGAACAACTTAGAAAGATTTAGGACC 58.495 37.037 0.00 0.00 0.00 4.46
3415 3448 8.504815 GGTGAACAACTTAGAAAGATTTAGGAC 58.495 37.037 0.00 0.00 0.00 3.85
3416 3449 7.664318 GGGTGAACAACTTAGAAAGATTTAGGA 59.336 37.037 0.00 0.00 0.00 2.94
3417 3450 7.360946 CGGGTGAACAACTTAGAAAGATTTAGG 60.361 40.741 0.00 0.00 0.00 2.69
3418 3451 7.386848 TCGGGTGAACAACTTAGAAAGATTTAG 59.613 37.037 0.00 0.00 0.00 1.85
3419 3452 7.218614 TCGGGTGAACAACTTAGAAAGATTTA 58.781 34.615 0.00 0.00 0.00 1.40
3420 3453 6.059484 TCGGGTGAACAACTTAGAAAGATTT 58.941 36.000 0.00 0.00 0.00 2.17
3421 3454 5.617252 TCGGGTGAACAACTTAGAAAGATT 58.383 37.500 0.00 0.00 0.00 2.40
3422 3455 5.223449 TCGGGTGAACAACTTAGAAAGAT 57.777 39.130 0.00 0.00 0.00 2.40
3423 3456 4.502604 CCTCGGGTGAACAACTTAGAAAGA 60.503 45.833 0.00 0.00 0.00 2.52
3424 3457 3.746492 CCTCGGGTGAACAACTTAGAAAG 59.254 47.826 0.00 0.00 0.00 2.62
3425 3458 3.135167 ACCTCGGGTGAACAACTTAGAAA 59.865 43.478 0.00 0.00 32.98 2.52
3426 3459 2.701951 ACCTCGGGTGAACAACTTAGAA 59.298 45.455 0.00 0.00 32.98 2.10
3427 3460 2.298163 GACCTCGGGTGAACAACTTAGA 59.702 50.000 0.00 0.00 35.25 2.10
3428 3461 2.612221 GGACCTCGGGTGAACAACTTAG 60.612 54.545 0.00 0.00 35.25 2.18
3429 3462 1.345415 GGACCTCGGGTGAACAACTTA 59.655 52.381 0.00 0.00 35.25 2.24
3430 3463 0.108019 GGACCTCGGGTGAACAACTT 59.892 55.000 0.00 0.00 35.25 2.66
3431 3464 0.763223 AGGACCTCGGGTGAACAACT 60.763 55.000 0.00 0.00 35.25 3.16
3432 3465 0.971386 TAGGACCTCGGGTGAACAAC 59.029 55.000 0.00 0.00 35.25 3.32
3433 3466 1.719529 TTAGGACCTCGGGTGAACAA 58.280 50.000 0.00 0.00 35.25 2.83
3434 3467 1.946984 ATTAGGACCTCGGGTGAACA 58.053 50.000 0.00 0.00 35.25 3.18
3435 3468 3.268330 GAAATTAGGACCTCGGGTGAAC 58.732 50.000 0.00 0.00 35.25 3.18
3436 3469 2.093869 CGAAATTAGGACCTCGGGTGAA 60.094 50.000 0.00 0.00 35.25 3.18
3437 3470 1.479323 CGAAATTAGGACCTCGGGTGA 59.521 52.381 0.00 0.00 35.25 4.02
3438 3471 1.479323 TCGAAATTAGGACCTCGGGTG 59.521 52.381 0.00 0.00 35.25 4.61
3439 3472 1.479730 GTCGAAATTAGGACCTCGGGT 59.520 52.381 0.00 0.00 39.44 5.28
3440 3473 1.755380 AGTCGAAATTAGGACCTCGGG 59.245 52.381 0.00 0.00 33.66 5.14
3441 3474 2.165845 ACAGTCGAAATTAGGACCTCGG 59.834 50.000 0.00 0.00 33.66 4.63
3442 3475 3.436496 GACAGTCGAAATTAGGACCTCG 58.564 50.000 0.00 0.00 33.66 4.63
3443 3476 3.734293 CGGACAGTCGAAATTAGGACCTC 60.734 52.174 0.00 2.09 33.66 3.85
3444 3477 2.165845 CGGACAGTCGAAATTAGGACCT 59.834 50.000 0.00 0.00 33.66 3.85
3445 3478 2.537401 CGGACAGTCGAAATTAGGACC 58.463 52.381 5.45 0.00 33.66 4.46
3446 3479 1.925185 GCGGACAGTCGAAATTAGGAC 59.075 52.381 0.00 1.56 0.00 3.85
3447 3480 1.134907 GGCGGACAGTCGAAATTAGGA 60.135 52.381 0.00 0.00 0.00 2.94
3448 3481 1.287425 GGCGGACAGTCGAAATTAGG 58.713 55.000 0.00 0.00 0.00 2.69
3481 3514 3.645975 AACGGTCAAAGCGCCACG 61.646 61.111 2.29 2.31 43.79 4.94
3482 3515 2.051345 CAACGGTCAAAGCGCCAC 60.051 61.111 2.29 0.00 43.79 5.01
3483 3516 3.959975 GCAACGGTCAAAGCGCCA 61.960 61.111 2.29 0.00 43.79 5.69
3484 3517 4.700365 GGCAACGGTCAAAGCGCC 62.700 66.667 2.29 0.00 43.79 6.53
3485 3518 3.959975 TGGCAACGGTCAAAGCGC 61.960 61.111 0.00 0.00 43.79 5.92
3486 3519 2.051345 GTGGCAACGGTCAAAGCG 60.051 61.111 0.00 0.00 45.69 4.68
3487 3520 2.051345 CGTGGCAACGGTCAAAGC 60.051 61.111 5.48 0.00 46.25 3.51
3496 3529 2.050714 TCGAGTCGACGTGGCAAC 60.051 61.111 12.09 0.00 34.70 4.17
3497 3530 2.254350 CTCGAGTCGACGTGGCAA 59.746 61.111 12.09 0.00 34.70 4.52
3498 3531 3.733960 CCTCGAGTCGACGTGGCA 61.734 66.667 12.09 0.00 39.39 4.92
3499 3532 4.477975 CCCTCGAGTCGACGTGGC 62.478 72.222 12.09 0.33 42.89 5.01
3500 3533 4.477975 GCCCTCGAGTCGACGTGG 62.478 72.222 12.09 11.68 43.54 4.94
3501 3534 4.477975 GGCCCTCGAGTCGACGTG 62.478 72.222 12.09 6.83 34.70 4.49
3504 3537 4.131088 GTGGGCCCTCGAGTCGAC 62.131 72.222 25.70 7.70 0.00 4.20
3518 3551 2.584143 GGTCGTTATCCCGCGTGG 60.584 66.667 8.42 8.42 0.00 4.94
3519 3552 1.876714 CTGGTCGTTATCCCGCGTG 60.877 63.158 4.92 0.00 0.00 5.34
3520 3553 2.493030 CTGGTCGTTATCCCGCGT 59.507 61.111 4.92 0.00 0.00 6.01
3521 3554 2.960129 GCTGGTCGTTATCCCGCG 60.960 66.667 0.00 0.00 0.00 6.46
3522 3555 2.588034 GGCTGGTCGTTATCCCGC 60.588 66.667 0.00 0.00 35.08 6.13
3523 3556 2.279252 CGGCTGGTCGTTATCCCG 60.279 66.667 0.00 0.00 0.00 5.14
3524 3557 1.520787 CACGGCTGGTCGTTATCCC 60.521 63.158 0.00 0.00 41.86 3.85
3525 3558 2.171725 GCACGGCTGGTCGTTATCC 61.172 63.158 0.00 0.00 41.86 2.59
3526 3559 0.810031 ATGCACGGCTGGTCGTTATC 60.810 55.000 0.00 0.00 41.86 1.75
3527 3560 0.392461 AATGCACGGCTGGTCGTTAT 60.392 50.000 0.00 0.00 41.86 1.89
3528 3561 0.604243 AAATGCACGGCTGGTCGTTA 60.604 50.000 0.00 0.00 41.86 3.18
3529 3562 1.452145 AAAATGCACGGCTGGTCGTT 61.452 50.000 0.00 0.00 41.86 3.85
3530 3563 1.452145 AAAAATGCACGGCTGGTCGT 61.452 50.000 0.00 0.00 44.91 4.34
3531 3564 1.285641 AAAAATGCACGGCTGGTCG 59.714 52.632 0.00 0.00 0.00 4.79
3560 3593 1.141185 GGAGAGATTAGGGTTGGGGG 58.859 60.000 0.00 0.00 0.00 5.40
3561 3594 1.490910 GTGGAGAGATTAGGGTTGGGG 59.509 57.143 0.00 0.00 0.00 4.96
3562 3595 2.171448 CTGTGGAGAGATTAGGGTTGGG 59.829 54.545 0.00 0.00 0.00 4.12
3563 3596 2.420687 GCTGTGGAGAGATTAGGGTTGG 60.421 54.545 0.00 0.00 0.00 3.77
3564 3597 2.420687 GGCTGTGGAGAGATTAGGGTTG 60.421 54.545 0.00 0.00 0.00 3.77
3565 3598 1.840635 GGCTGTGGAGAGATTAGGGTT 59.159 52.381 0.00 0.00 0.00 4.11
3566 3599 1.501582 GGCTGTGGAGAGATTAGGGT 58.498 55.000 0.00 0.00 0.00 4.34
3567 3600 0.390860 CGGCTGTGGAGAGATTAGGG 59.609 60.000 0.00 0.00 0.00 3.53
3568 3601 1.115467 ACGGCTGTGGAGAGATTAGG 58.885 55.000 0.00 0.00 0.00 2.69
3569 3602 2.952978 ACTACGGCTGTGGAGAGATTAG 59.047 50.000 16.89 0.07 0.00 1.73
3570 3603 2.950309 GACTACGGCTGTGGAGAGATTA 59.050 50.000 16.89 0.00 0.00 1.75
3571 3604 1.751924 GACTACGGCTGTGGAGAGATT 59.248 52.381 16.89 0.00 0.00 2.40
3572 3605 1.394618 GACTACGGCTGTGGAGAGAT 58.605 55.000 16.89 0.00 0.00 2.75
3573 3606 0.680280 GGACTACGGCTGTGGAGAGA 60.680 60.000 16.89 0.00 0.00 3.10
3574 3607 0.681564 AGGACTACGGCTGTGGAGAG 60.682 60.000 16.89 3.65 0.00 3.20
3575 3608 0.251653 AAGGACTACGGCTGTGGAGA 60.252 55.000 16.89 0.00 0.00 3.71
3576 3609 0.608640 AAAGGACTACGGCTGTGGAG 59.391 55.000 16.89 4.86 0.00 3.86
3577 3610 0.606604 GAAAGGACTACGGCTGTGGA 59.393 55.000 16.89 0.00 0.00 4.02
3578 3611 0.391263 GGAAAGGACTACGGCTGTGG 60.391 60.000 8.92 8.23 0.00 4.17
3579 3612 0.608640 AGGAAAGGACTACGGCTGTG 59.391 55.000 8.92 0.70 0.00 3.66
3580 3613 0.896226 GAGGAAAGGACTACGGCTGT 59.104 55.000 2.42 2.42 0.00 4.40
3581 3614 1.135333 GAGAGGAAAGGACTACGGCTG 59.865 57.143 0.00 0.00 0.00 4.85
3582 3615 1.476477 GAGAGGAAAGGACTACGGCT 58.524 55.000 0.00 0.00 0.00 5.52
3583 3616 0.460722 GGAGAGGAAAGGACTACGGC 59.539 60.000 0.00 0.00 0.00 5.68
3584 3617 2.025898 GAGGAGAGGAAAGGACTACGG 58.974 57.143 0.00 0.00 0.00 4.02
3585 3618 3.007473 AGAGGAGAGGAAAGGACTACG 57.993 52.381 0.00 0.00 0.00 3.51
3586 3619 3.702548 GGAAGAGGAGAGGAAAGGACTAC 59.297 52.174 0.00 0.00 0.00 2.73
3587 3620 3.309994 GGGAAGAGGAGAGGAAAGGACTA 60.310 52.174 0.00 0.00 0.00 2.59
3588 3621 2.561069 GGGAAGAGGAGAGGAAAGGACT 60.561 54.545 0.00 0.00 0.00 3.85
3589 3622 1.834896 GGGAAGAGGAGAGGAAAGGAC 59.165 57.143 0.00 0.00 0.00 3.85
3590 3623 1.273896 GGGGAAGAGGAGAGGAAAGGA 60.274 57.143 0.00 0.00 0.00 3.36
3591 3624 1.208706 GGGGAAGAGGAGAGGAAAGG 58.791 60.000 0.00 0.00 0.00 3.11
3592 3625 1.557371 GTGGGGAAGAGGAGAGGAAAG 59.443 57.143 0.00 0.00 0.00 2.62
3593 3626 1.657804 GTGGGGAAGAGGAGAGGAAA 58.342 55.000 0.00 0.00 0.00 3.13
3594 3627 0.252742 GGTGGGGAAGAGGAGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
3595 3628 1.156322 AGGTGGGGAAGAGGAGAGGA 61.156 60.000 0.00 0.00 0.00 3.71
3596 3629 0.689412 GAGGTGGGGAAGAGGAGAGG 60.689 65.000 0.00 0.00 0.00 3.69
3597 3630 0.338120 AGAGGTGGGGAAGAGGAGAG 59.662 60.000 0.00 0.00 0.00 3.20
3598 3631 0.336737 GAGAGGTGGGGAAGAGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
3599 3632 0.338120 AGAGAGGTGGGGAAGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
3600 3633 0.336737 GAGAGAGGTGGGGAAGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
3601 3634 0.338120 AGAGAGAGGTGGGGAAGAGG 59.662 60.000 0.00 0.00 0.00 3.69
3602 3635 1.484038 CAGAGAGAGGTGGGGAAGAG 58.516 60.000 0.00 0.00 0.00 2.85
3603 3636 0.616111 GCAGAGAGAGGTGGGGAAGA 60.616 60.000 0.00 0.00 0.00 2.87
3604 3637 0.617249 AGCAGAGAGAGGTGGGGAAG 60.617 60.000 0.00 0.00 0.00 3.46
3605 3638 0.616111 GAGCAGAGAGAGGTGGGGAA 60.616 60.000 0.00 0.00 0.00 3.97
3606 3639 1.000993 GAGCAGAGAGAGGTGGGGA 59.999 63.158 0.00 0.00 0.00 4.81
3607 3640 1.001503 AGAGCAGAGAGAGGTGGGG 59.998 63.158 0.00 0.00 0.00 4.96
3608 3641 1.329171 CCAGAGCAGAGAGAGGTGGG 61.329 65.000 0.00 0.00 0.00 4.61
3609 3642 1.958902 GCCAGAGCAGAGAGAGGTGG 61.959 65.000 0.00 0.00 39.53 4.61
3610 3643 1.516892 GCCAGAGCAGAGAGAGGTG 59.483 63.158 0.00 0.00 39.53 4.00
3611 3644 2.051518 CGCCAGAGCAGAGAGAGGT 61.052 63.158 0.00 0.00 39.83 3.85
3612 3645 1.318886 TTCGCCAGAGCAGAGAGAGG 61.319 60.000 0.00 0.00 39.83 3.69
3613 3646 0.529833 TTTCGCCAGAGCAGAGAGAG 59.470 55.000 0.00 0.00 39.83 3.20
3614 3647 0.244994 GTTTCGCCAGAGCAGAGAGA 59.755 55.000 0.00 0.00 39.83 3.10
3615 3648 0.037882 TGTTTCGCCAGAGCAGAGAG 60.038 55.000 0.00 0.00 39.83 3.20
3616 3649 0.037882 CTGTTTCGCCAGAGCAGAGA 60.038 55.000 0.00 0.00 39.83 3.10
3617 3650 1.018226 CCTGTTTCGCCAGAGCAGAG 61.018 60.000 0.00 0.00 39.83 3.35
3618 3651 1.004560 CCTGTTTCGCCAGAGCAGA 60.005 57.895 0.00 0.00 39.83 4.26
3619 3652 2.037136 CCCTGTTTCGCCAGAGCAG 61.037 63.158 0.00 0.00 39.83 4.24
3620 3653 2.032528 CCCTGTTTCGCCAGAGCA 59.967 61.111 0.00 0.00 39.83 4.26
3621 3654 2.747855 CCCCTGTTTCGCCAGAGC 60.748 66.667 0.00 0.00 34.23 4.09
3622 3655 1.078848 CTCCCCTGTTTCGCCAGAG 60.079 63.158 0.00 0.00 34.23 3.35
3623 3656 0.909610 ATCTCCCCTGTTTCGCCAGA 60.910 55.000 0.00 0.00 34.23 3.86
3624 3657 0.462759 GATCTCCCCTGTTTCGCCAG 60.463 60.000 0.00 0.00 0.00 4.85
3625 3658 1.602237 GATCTCCCCTGTTTCGCCA 59.398 57.895 0.00 0.00 0.00 5.69
3626 3659 1.521681 CGATCTCCCCTGTTTCGCC 60.522 63.158 0.00 0.00 0.00 5.54
3627 3660 0.806492 GTCGATCTCCCCTGTTTCGC 60.806 60.000 0.00 0.00 0.00 4.70
3628 3661 0.525668 CGTCGATCTCCCCTGTTTCG 60.526 60.000 0.00 0.00 0.00 3.46
3629 3662 0.179108 CCGTCGATCTCCCCTGTTTC 60.179 60.000 0.00 0.00 0.00 2.78
3630 3663 1.898154 CCGTCGATCTCCCCTGTTT 59.102 57.895 0.00 0.00 0.00 2.83
3631 3664 2.722201 GCCGTCGATCTCCCCTGTT 61.722 63.158 0.00 0.00 0.00 3.16
3632 3665 3.148279 GCCGTCGATCTCCCCTGT 61.148 66.667 0.00 0.00 0.00 4.00
3633 3666 4.271816 CGCCGTCGATCTCCCCTG 62.272 72.222 0.00 0.00 38.10 4.45
3650 3683 3.358076 CTCTTCTCACCGGACCGCC 62.358 68.421 9.46 0.00 0.00 6.13
3651 3684 2.182030 CTCTTCTCACCGGACCGC 59.818 66.667 9.46 0.00 0.00 5.68
3652 3685 2.885861 CCTCTTCTCACCGGACCG 59.114 66.667 9.46 6.99 0.00 4.79
3653 3686 2.232298 CTGCCTCTTCTCACCGGACC 62.232 65.000 9.46 0.00 0.00 4.46
3654 3687 1.216710 CTGCCTCTTCTCACCGGAC 59.783 63.158 9.46 0.00 0.00 4.79
3655 3688 1.984570 CCTGCCTCTTCTCACCGGA 60.985 63.158 9.46 0.00 0.00 5.14
3656 3689 2.581354 CCTGCCTCTTCTCACCGG 59.419 66.667 0.00 0.00 0.00 5.28
3657 3690 2.125350 GCCTGCCTCTTCTCACCG 60.125 66.667 0.00 0.00 0.00 4.94
3658 3691 2.125350 CGCCTGCCTCTTCTCACC 60.125 66.667 0.00 0.00 0.00 4.02
3659 3692 2.125350 CCGCCTGCCTCTTCTCAC 60.125 66.667 0.00 0.00 0.00 3.51
3660 3693 4.087892 GCCGCCTGCCTCTTCTCA 62.088 66.667 0.00 0.00 0.00 3.27
3677 3710 1.883084 GGACAAGCGCCTACGATGG 60.883 63.158 2.29 0.00 43.93 3.51
3678 3711 2.230940 CGGACAAGCGCCTACGATG 61.231 63.158 2.29 0.00 43.93 3.84
3679 3712 2.104331 CGGACAAGCGCCTACGAT 59.896 61.111 2.29 0.00 43.93 3.73
3680 3713 4.124351 CCGGACAAGCGCCTACGA 62.124 66.667 2.29 0.00 43.93 3.43
3723 3756 4.451150 TCCAGGTCGCCGATGCAC 62.451 66.667 0.00 0.00 37.32 4.57
3724 3757 4.147449 CTCCAGGTCGCCGATGCA 62.147 66.667 0.00 0.00 37.32 3.96
3725 3758 3.157217 ATCTCCAGGTCGCCGATGC 62.157 63.158 0.00 0.00 0.00 3.91
3726 3759 1.006805 GATCTCCAGGTCGCCGATG 60.007 63.158 0.00 0.00 0.00 3.84
3727 3760 2.203771 GGATCTCCAGGTCGCCGAT 61.204 63.158 0.00 0.00 35.64 4.18
3728 3761 2.833582 GGATCTCCAGGTCGCCGA 60.834 66.667 0.00 0.00 35.64 5.54
3729 3762 2.835431 AGGATCTCCAGGTCGCCG 60.835 66.667 0.00 0.00 38.89 6.46
3730 3763 3.133946 GAGGATCTCCAGGTCGCC 58.866 66.667 0.00 0.00 38.89 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.