Multiple sequence alignment - TraesCS3B01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G312400 chr3B 100.000 9585 0 0 1 9585 501971082 501980666 0.000000e+00 17701.0
1 TraesCS3B01G312400 chr3B 86.395 294 34 4 2508 2796 254941124 254941416 5.590000e-82 316.0
2 TraesCS3B01G312400 chr3B 82.743 226 38 1 8829 9053 694098866 694099091 5.870000e-47 200.0
3 TraesCS3B01G312400 chr3B 91.803 122 9 1 8797 8917 658489550 658489671 1.660000e-37 169.0
4 TraesCS3B01G312400 chr3B 88.571 70 4 3 9122 9191 382708102 382708167 2.220000e-11 82.4
5 TraesCS3B01G312400 chr3B 88.571 70 4 3 9122 9191 658488987 658489052 2.220000e-11 82.4
6 TraesCS3B01G312400 chr3D 95.410 6361 168 39 2848 9135 386293511 386299820 0.000000e+00 10015.0
7 TraesCS3B01G312400 chr3D 93.702 2858 91 35 1 2850 386290574 386293350 0.000000e+00 4198.0
8 TraesCS3B01G312400 chr3D 92.205 449 13 9 9158 9585 386299807 386300254 4.920000e-172 616.0
9 TraesCS3B01G312400 chr3D 79.777 539 64 23 2508 3008 175544194 175544725 5.510000e-92 350.0
10 TraesCS3B01G312400 chr3D 95.105 143 6 1 8912 9053 410670082 410670224 3.480000e-54 224.0
11 TraesCS3B01G312400 chr3D 92.562 121 8 1 8794 8913 14846791 14846671 1.280000e-38 172.0
12 TraesCS3B01G312400 chr3D 92.500 120 8 1 8797 8915 107670963 107671082 4.600000e-38 171.0
13 TraesCS3B01G312400 chr3D 83.529 85 10 4 7482 7564 386298264 386298182 1.030000e-09 76.8
14 TraesCS3B01G312400 chr3A 95.853 4582 144 18 1713 6256 507758152 507762725 0.000000e+00 7367.0
15 TraesCS3B01G312400 chr3A 93.022 1648 65 15 1 1635 507756396 507758006 0.000000e+00 2361.0
16 TraesCS3B01G312400 chr3A 96.061 1244 42 6 6254 7494 507763652 507764891 0.000000e+00 2019.0
17 TraesCS3B01G312400 chr3A 95.476 1260 36 6 7557 8798 507764890 507766146 0.000000e+00 1991.0
18 TraesCS3B01G312400 chr3A 82.423 421 26 16 9195 9585 507766207 507766609 3.340000e-84 324.0
19 TraesCS3B01G312400 chr3A 85.473 296 34 6 2508 2798 215957038 215957329 5.630000e-77 300.0
20 TraesCS3B01G312400 chr3A 89.610 231 9 5 9356 9571 51915153 51915383 7.330000e-71 279.0
21 TraesCS3B01G312400 chr3A 94.231 52 2 1 6362 6412 431125566 431125515 2.870000e-10 78.7
22 TraesCS3B01G312400 chr3A 96.970 33 1 0 7532 7564 507764890 507764922 1.000000e-03 56.5
23 TraesCS3B01G312400 chr7D 81.467 518 64 18 1 512 518093464 518092973 6.980000e-106 396.0
24 TraesCS3B01G312400 chr7D 79.421 311 37 15 2488 2791 391584798 391584508 2.730000e-45 195.0
25 TraesCS3B01G312400 chr7D 77.778 315 43 10 4900 5195 290866518 290866824 1.660000e-37 169.0
26 TraesCS3B01G312400 chr7D 92.857 70 4 1 1734 1802 529857627 529857558 6.130000e-17 100.0
27 TraesCS3B01G312400 chr7D 95.349 43 2 0 7475 7517 596062993 596063035 1.730000e-07 69.4
28 TraesCS3B01G312400 chr7B 79.126 618 89 26 4916 5506 226612675 226612071 3.250000e-104 390.0
29 TraesCS3B01G312400 chr7B 94.595 148 6 2 8912 9057 131081566 131081713 2.690000e-55 228.0
30 TraesCS3B01G312400 chr7B 90.076 131 12 1 8796 8925 589467160 589467030 1.660000e-37 169.0
31 TraesCS3B01G312400 chr7B 84.496 129 17 1 2665 2790 388173733 388173605 3.630000e-24 124.0
32 TraesCS3B01G312400 chr7B 100.000 39 0 0 7568 7606 228115872 228115834 1.340000e-08 73.1
33 TraesCS3B01G312400 chr7B 100.000 36 0 0 7482 7517 228115835 228115870 6.210000e-07 67.6
34 TraesCS3B01G312400 chr5A 79.092 617 90 24 4916 5506 288908903 288909506 1.170000e-103 388.0
35 TraesCS3B01G312400 chr5A 78.591 369 67 10 1 362 128117506 128117869 5.790000e-57 233.0
36 TraesCS3B01G312400 chr5A 85.714 126 16 1 5383 5506 701891407 701891282 2.170000e-26 132.0
37 TraesCS3B01G312400 chr5A 88.571 70 5 3 9122 9191 659866943 659866877 2.220000e-11 82.4
38 TraesCS3B01G312400 chr5A 85.897 78 7 3 9122 9199 519884798 519884871 7.980000e-11 80.5
39 TraesCS3B01G312400 chr6A 78.281 640 95 21 4897 5506 617540178 617540803 1.180000e-98 372.0
40 TraesCS3B01G312400 chr6A 78.136 558 83 24 1 553 104076791 104076268 1.550000e-82 318.0
41 TraesCS3B01G312400 chr6A 89.189 74 8 0 1732 1805 496624407 496624334 1.020000e-14 93.5
42 TraesCS3B01G312400 chr6A 90.000 70 5 1 9122 9191 91374883 91374950 1.330000e-13 89.8
43 TraesCS3B01G312400 chr6A 92.308 52 2 1 6362 6413 59711302 59711351 1.340000e-08 73.1
44 TraesCS3B01G312400 chr2B 78.115 626 90 29 4916 5506 717365075 717365688 4.260000e-93 353.0
45 TraesCS3B01G312400 chr2B 92.715 151 10 1 8904 9053 38039106 38038956 5.830000e-52 217.0
46 TraesCS3B01G312400 chr2B 83.217 143 22 2 4900 5042 606867250 606867390 7.810000e-26 130.0
47 TraesCS3B01G312400 chr2B 90.769 65 3 1 9522 9583 528207654 528207718 6.170000e-12 84.2
48 TraesCS3B01G312400 chr2B 100.000 38 0 0 7480 7517 174395563 174395600 4.800000e-08 71.3
49 TraesCS3B01G312400 chr2B 95.556 45 1 1 7568 7611 507827125 507827169 4.800000e-08 71.3
50 TraesCS3B01G312400 chr2B 92.157 51 2 2 7468 7517 507827176 507827127 4.800000e-08 71.3
51 TraesCS3B01G312400 chr2D 87.261 314 22 6 2472 2783 649143902 649143605 9.220000e-90 342.0
52 TraesCS3B01G312400 chr2D 91.613 155 11 2 8912 9064 445733813 445733659 7.540000e-51 213.0
53 TraesCS3B01G312400 chr2D 80.224 268 48 3 103 365 585658948 585658681 7.590000e-46 196.0
54 TraesCS3B01G312400 chr2D 88.571 70 4 3 9122 9191 531967489 531967554 2.220000e-11 82.4
55 TraesCS3B01G312400 chr2D 95.652 46 2 0 6359 6404 98269107 98269062 3.710000e-09 75.0
56 TraesCS3B01G312400 chr2D 100.000 40 0 0 7569 7608 625151925 625151964 3.710000e-09 75.0
57 TraesCS3B01G312400 chr2D 89.474 57 3 2 6359 6415 468098309 468098362 1.730000e-07 69.4
58 TraesCS3B01G312400 chr2D 100.000 36 0 0 7482 7517 625151961 625151926 6.210000e-07 67.6
59 TraesCS3B01G312400 chr5D 85.093 322 41 5 2480 2796 308629826 308630145 1.200000e-83 322.0
60 TraesCS3B01G312400 chr5D 91.228 57 3 2 7461 7517 29900977 29901031 1.030000e-09 76.8
61 TraesCS3B01G312400 chr5D 100.000 38 0 0 7568 7605 29901033 29900996 4.800000e-08 71.3
62 TraesCS3B01G312400 chr7A 87.023 262 30 4 8796 9054 721098232 721098492 9.420000e-75 292.0
63 TraesCS3B01G312400 chr7A 89.610 231 9 5 9356 9571 211291303 211291533 7.330000e-71 279.0
64 TraesCS3B01G312400 chr7A 86.452 155 20 1 8796 8949 575459100 575459254 1.660000e-37 169.0
65 TraesCS3B01G312400 chr7A 76.656 317 46 10 4900 5195 329466141 329466450 6.000000e-32 150.0
66 TraesCS3B01G312400 chr7A 89.552 67 1 1 7479 7539 411492948 411493014 7.980000e-11 80.5
67 TraesCS3B01G312400 chr7A 100.000 38 0 0 7568 7605 411492988 411492951 4.800000e-08 71.3
68 TraesCS3B01G312400 chr7A 100.000 38 0 0 7568 7605 466945220 466945183 4.800000e-08 71.3
69 TraesCS3B01G312400 chr4D 90.043 231 8 5 9356 9571 123738655 123738425 1.580000e-72 285.0
70 TraesCS3B01G312400 chr4D 89.224 232 9 6 9355 9571 123509158 123508928 9.480000e-70 276.0
71 TraesCS3B01G312400 chr4D 94.068 118 6 1 8797 8913 367720887 367720770 2.750000e-40 178.0
72 TraesCS3B01G312400 chr4D 95.652 46 2 0 6357 6402 394295128 394295083 3.710000e-09 75.0
73 TraesCS3B01G312400 chr4D 90.000 60 1 2 7481 7539 5786238 5786183 1.340000e-08 73.1
74 TraesCS3B01G312400 chr4D 95.556 45 2 0 6358 6402 173574374 173574418 1.340000e-08 73.1
75 TraesCS3B01G312400 chr4D 100.000 38 0 0 7568 7605 5786200 5786237 4.800000e-08 71.3
76 TraesCS3B01G312400 chr4D 97.368 38 1 0 7568 7605 369904221 369904258 2.230000e-06 65.8
77 TraesCS3B01G312400 chr4D 97.368 38 1 0 7480 7517 369904260 369904223 2.230000e-06 65.8
78 TraesCS3B01G312400 chr6D 89.610 231 9 5 9356 9571 458963944 458964174 7.330000e-71 279.0
79 TraesCS3B01G312400 chr6D 89.177 231 10 3 9356 9571 108466707 108466937 3.410000e-69 274.0
80 TraesCS3B01G312400 chr6D 88.312 231 12 3 9356 9571 57920179 57920409 7.380000e-66 263.0
81 TraesCS3B01G312400 chr6D 78.095 315 37 18 230 540 144856272 144856558 4.600000e-38 171.0
82 TraesCS3B01G312400 chr6D 91.803 61 5 0 1732 1792 346830345 346830405 1.720000e-12 86.1
83 TraesCS3B01G312400 chr6D 100.000 38 0 0 7568 7605 87467559 87467522 4.800000e-08 71.3
84 TraesCS3B01G312400 chr6D 95.349 43 2 0 6359 6401 462210655 462210697 1.730000e-07 69.4
85 TraesCS3B01G312400 chr6D 95.349 43 1 1 7476 7517 87467515 87467557 6.210000e-07 67.6
86 TraesCS3B01G312400 chr6D 97.436 39 1 0 7568 7606 106837869 106837831 6.210000e-07 67.6
87 TraesCS3B01G312400 chr6D 93.333 45 3 0 6357 6401 177788382 177788426 6.210000e-07 67.6
88 TraesCS3B01G312400 chr6D 87.931 58 6 1 6345 6401 456406358 456406415 6.210000e-07 67.6
89 TraesCS3B01G312400 chr6D 93.182 44 3 0 6359 6402 7460178 7460221 2.230000e-06 65.8
90 TraesCS3B01G312400 chr6D 93.182 44 3 0 6358 6401 78083164 78083121 2.230000e-06 65.8
91 TraesCS3B01G312400 chr6D 86.667 60 6 1 6359 6418 288470116 288470173 2.230000e-06 65.8
92 TraesCS3B01G312400 chr6D 97.368 38 1 0 7568 7605 396447981 396447944 2.230000e-06 65.8
93 TraesCS3B01G312400 chr6D 84.058 69 8 3 6347 6415 313153073 313153008 8.040000e-06 63.9
94 TraesCS3B01G312400 chr6D 97.297 37 1 0 7478 7514 396447940 396447976 8.040000e-06 63.9
95 TraesCS3B01G312400 chr6D 100.000 33 0 0 7482 7514 106837832 106837864 2.890000e-05 62.1
96 TraesCS3B01G312400 chr6D 87.273 55 5 2 6345 6399 325386234 325386286 2.890000e-05 62.1
97 TraesCS3B01G312400 chr1D 89.610 231 9 5 9356 9571 212468864 212468634 7.330000e-71 279.0
98 TraesCS3B01G312400 chr1D 87.097 186 21 2 2472 2655 73718163 73718347 3.510000e-49 207.0
99 TraesCS3B01G312400 chr1D 93.103 58 3 1 7482 7539 325490367 325490311 6.170000e-12 84.2
100 TraesCS3B01G312400 chr1D 94.000 50 3 0 6352 6401 115989916 115989965 1.030000e-09 76.8
101 TraesCS3B01G312400 chr1D 93.750 48 2 1 6355 6401 124334332 124334379 4.800000e-08 71.3
102 TraesCS3B01G312400 chr1D 97.436 39 1 0 7568 7606 103683538 103683500 6.210000e-07 67.6
103 TraesCS3B01G312400 chr1D 97.436 39 0 1 7567 7605 325490330 325490367 2.230000e-06 65.8
104 TraesCS3B01G312400 chr1D 89.796 49 5 0 6349 6397 473744589 473744637 8.040000e-06 63.9
105 TraesCS3B01G312400 chrUn 89.177 231 10 5 9356 9571 86477933 86478163 3.410000e-69 274.0
106 TraesCS3B01G312400 chrUn 89.177 231 10 5 9356 9571 186192421 186192191 3.410000e-69 274.0
107 TraesCS3B01G312400 chrUn 89.177 231 10 3 9356 9571 221549423 221549193 3.410000e-69 274.0
108 TraesCS3B01G312400 chrUn 91.558 154 12 1 8912 9064 457867416 457867569 2.710000e-50 211.0
109 TraesCS3B01G312400 chrUn 89.474 152 4 2 9432 9571 415353803 415353954 2.130000e-41 182.0
110 TraesCS3B01G312400 chrUn 95.349 43 2 0 6359 6401 197752395 197752437 1.730000e-07 69.4
111 TraesCS3B01G312400 chrUn 93.182 44 3 0 6358 6401 104668807 104668850 2.230000e-06 65.8
112 TraesCS3B01G312400 chrUn 95.000 40 2 0 6362 6401 19086528 19086489 8.040000e-06 63.9
113 TraesCS3B01G312400 chrUn 95.000 40 2 0 6362 6401 31861291 31861252 8.040000e-06 63.9
114 TraesCS3B01G312400 chrUn 95.000 40 2 0 6362 6401 65138950 65138911 8.040000e-06 63.9
115 TraesCS3B01G312400 chrUn 93.023 43 3 0 6357 6399 68883354 68883312 8.040000e-06 63.9
116 TraesCS3B01G312400 chrUn 95.000 40 2 0 6362 6401 84435462 84435423 8.040000e-06 63.9
117 TraesCS3B01G312400 chr5B 87.097 217 22 4 2472 2683 703259732 703259947 3.460000e-59 241.0
118 TraesCS3B01G312400 chr1A 90.323 186 15 2 2472 2655 73316459 73316643 3.460000e-59 241.0
119 TraesCS3B01G312400 chr1A 85.106 94 14 0 2703 2796 73316664 73316757 7.920000e-16 97.1
120 TraesCS3B01G312400 chr1A 78.832 137 21 6 423 552 147597923 147597788 1.720000e-12 86.1
121 TraesCS3B01G312400 chr1A 95.652 46 2 0 6356 6401 522508150 522508195 3.710000e-09 75.0
122 TraesCS3B01G312400 chr1A 97.500 40 1 0 7568 7607 282696295 282696256 1.730000e-07 69.4
123 TraesCS3B01G312400 chr1B 81.728 301 32 10 2472 2762 117173145 117173432 7.490000e-56 230.0
124 TraesCS3B01G312400 chr1B 80.973 226 40 1 146 368 44617442 44617217 9.890000e-40 176.0
125 TraesCS3B01G312400 chr1B 81.731 104 18 1 1961 2064 664789317 664789215 1.720000e-12 86.1
126 TraesCS3B01G312400 chr1B 97.500 40 1 0 7568 7607 314739118 314739079 1.730000e-07 69.4
127 TraesCS3B01G312400 chr4B 81.938 227 38 3 8829 9053 438442488 438442713 1.270000e-43 189.0
128 TraesCS3B01G312400 chr4B 80.000 195 34 5 149 341 632887704 632887895 1.300000e-28 139.0
129 TraesCS3B01G312400 chr4B 88.571 70 4 3 9122 9191 432817312 432817377 2.220000e-11 82.4
130 TraesCS3B01G312400 chr4B 86.667 60 6 1 6357 6416 578509613 578509670 2.230000e-06 65.8
131 TraesCS3B01G312400 chr4B 86.667 60 6 1 6357 6416 578518774 578518831 2.230000e-06 65.8
132 TraesCS3B01G312400 chr4A 91.429 70 4 2 9122 9191 601204566 601204633 2.850000e-15 95.3
133 TraesCS3B01G312400 chr4A 95.745 47 2 0 6355 6401 427133054 427133100 1.030000e-09 76.8
134 TraesCS3B01G312400 chr2A 88.571 70 4 3 9122 9191 678421998 678422063 2.220000e-11 82.4
135 TraesCS3B01G312400 chr2A 95.745 47 2 0 6358 6404 162412443 162412489 1.030000e-09 76.8
136 TraesCS3B01G312400 chr2A 100.000 39 0 0 7567 7605 125205716 125205754 1.340000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G312400 chr3B 501971082 501980666 9584 False 17701.000000 17701 100.000000 1 9585 1 chr3B.!!$F3 9584
1 TraesCS3B01G312400 chr3D 386290574 386300254 9680 False 4943.000000 10015 93.772333 1 9585 3 chr3D.!!$F4 9584
2 TraesCS3B01G312400 chr3D 175544194 175544725 531 False 350.000000 350 79.777000 2508 3008 1 chr3D.!!$F2 500
3 TraesCS3B01G312400 chr3A 507756396 507766609 10213 False 2353.083333 7367 93.300833 1 9585 6 chr3A.!!$F3 9584
4 TraesCS3B01G312400 chr7B 226612071 226612675 604 True 390.000000 390 79.126000 4916 5506 1 chr7B.!!$R1 590
5 TraesCS3B01G312400 chr5A 288908903 288909506 603 False 388.000000 388 79.092000 4916 5506 1 chr5A.!!$F2 590
6 TraesCS3B01G312400 chr6A 617540178 617540803 625 False 372.000000 372 78.281000 4897 5506 1 chr6A.!!$F3 609
7 TraesCS3B01G312400 chr6A 104076268 104076791 523 True 318.000000 318 78.136000 1 553 1 chr6A.!!$R1 552
8 TraesCS3B01G312400 chr2B 717365075 717365688 613 False 353.000000 353 78.115000 4916 5506 1 chr2B.!!$F5 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 285 0.112218 TTTGTAGCACTGGCACCCAT 59.888 50.000 0.00 0.00 44.61 4.00 F
283 286 0.322456 TTGTAGCACTGGCACCCATC 60.322 55.000 0.00 0.00 44.61 3.51 F
396 400 1.229400 TCTTCGTAGGGCCCCTGTT 60.229 57.895 21.43 1.11 34.61 3.16 F
2150 2295 1.554836 TTGGTGTTATGGGCATGTGG 58.445 50.000 0.00 0.00 0.00 4.17 F
2796 2947 0.405973 GGCTTCTCTTCCCCAACCTT 59.594 55.000 0.00 0.00 0.00 3.50 F
3933 4291 0.030638 CAAACGTGCTTCCCAAGTGG 59.969 55.000 0.00 0.00 36.26 4.00 F
5056 5425 0.249868 CTGACAGCTGTTTCACCGGA 60.250 55.000 22.65 0.00 0.00 5.14 F
5973 6377 1.202627 TGTTGGAAAGTTTGCATGGGC 60.203 47.619 10.84 3.20 41.68 5.36 F
6651 7984 0.108804 CGTTCTAGGTGGTGCGTGAT 60.109 55.000 0.00 0.00 0.00 3.06 F
7869 9205 1.000955 GTGCTGTAGTGCTGTGTACCT 59.999 52.381 0.00 0.00 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2066 1.060743 GGTCCTTCCCCCTATGGTCC 61.061 65.000 0.00 0.00 0.00 4.46 R
2311 2456 1.818674 CCACAAAGTAAGGGCATGGAC 59.181 52.381 0.00 0.00 0.00 4.02 R
2363 2508 1.903404 TCTGCGCTGACTGTCTCCA 60.903 57.895 13.46 0.56 0.00 3.86 R
3601 3952 2.105821 AGATCGACCAACCACCAAAAGA 59.894 45.455 0.00 0.00 0.00 2.52 R
4454 4814 1.374252 CCCTCCGGAGACACAAACG 60.374 63.158 33.39 12.91 0.00 3.60 R
5773 6173 1.998315 CAGCTCGACAGTTTCTGGATG 59.002 52.381 1.90 0.00 35.51 3.51 R
6647 7980 0.615331 TCCACTTCAGGCCAGATCAC 59.385 55.000 5.01 0.00 0.00 3.06 R
7937 9290 2.023673 TGGCGCCATTCTTTTATGAGG 58.976 47.619 29.03 0.00 0.00 3.86 R
7944 9297 2.092968 TCTGTAGATGGCGCCATTCTTT 60.093 45.455 40.56 27.04 36.70 2.52 R
8890 10253 0.036388 TCTCTCCGCCGAAAATGCTT 60.036 50.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 209 5.270853 GTGGATGACACGTAATAAAATGGC 58.729 41.667 0.00 0.00 40.85 4.40
228 229 2.544685 CGATTGAGCGGATCTTTCTGT 58.455 47.619 0.00 0.00 0.00 3.41
252 253 2.810852 CAAGCCTCTGACTCCTTCAAAC 59.189 50.000 0.00 0.00 32.21 2.93
282 285 0.112218 TTTGTAGCACTGGCACCCAT 59.888 50.000 0.00 0.00 44.61 4.00
283 286 0.322456 TTGTAGCACTGGCACCCATC 60.322 55.000 0.00 0.00 44.61 3.51
370 373 1.688627 CCTAACCTCTTCGTAGGGCCT 60.689 57.143 12.58 12.58 41.32 5.19
396 400 1.229400 TCTTCGTAGGGCCCCTGTT 60.229 57.895 21.43 1.11 34.61 3.16
512 518 6.569418 CGTTTGAATGTTGGTTGTATGGATGA 60.569 38.462 0.00 0.00 0.00 2.92
515 521 7.479352 TGAATGTTGGTTGTATGGATGATTT 57.521 32.000 0.00 0.00 0.00 2.17
541 547 8.691797 TCTTTATTTATAAAGCTGGGCGAAAAT 58.308 29.630 14.54 0.00 45.46 1.82
588 594 5.073965 TCAGTGGTTTACCCTAAATTCTGGT 59.926 40.000 0.00 0.00 36.15 4.00
592 598 7.037153 AGTGGTTTACCCTAAATTCTGGTGATA 60.037 37.037 0.00 0.00 33.55 2.15
618 624 4.983671 AGAAATGCCCTAACGGATTTTC 57.016 40.909 0.00 0.00 35.66 2.29
659 671 6.067901 TCCCACCCTATAAAATTCCTCCAAAT 60.068 38.462 0.00 0.00 0.00 2.32
660 672 6.267699 CCCACCCTATAAAATTCCTCCAAATC 59.732 42.308 0.00 0.00 0.00 2.17
661 673 6.838612 CCACCCTATAAAATTCCTCCAAATCA 59.161 38.462 0.00 0.00 0.00 2.57
662 674 7.344352 CCACCCTATAAAATTCCTCCAAATCAA 59.656 37.037 0.00 0.00 0.00 2.57
663 675 8.757877 CACCCTATAAAATTCCTCCAAATCAAA 58.242 33.333 0.00 0.00 0.00 2.69
664 676 9.506042 ACCCTATAAAATTCCTCCAAATCAAAT 57.494 29.630 0.00 0.00 0.00 2.32
665 677 9.987272 CCCTATAAAATTCCTCCAAATCAAATC 57.013 33.333 0.00 0.00 0.00 2.17
671 683 9.796180 AAAATTCCTCCAAATCAAATCAAATCA 57.204 25.926 0.00 0.00 0.00 2.57
672 684 9.796180 AAATTCCTCCAAATCAAATCAAATCAA 57.204 25.926 0.00 0.00 0.00 2.57
673 685 9.796180 AATTCCTCCAAATCAAATCAAATCAAA 57.204 25.926 0.00 0.00 0.00 2.69
674 686 9.969001 ATTCCTCCAAATCAAATCAAATCAAAT 57.031 25.926 0.00 0.00 0.00 2.32
675 687 9.439500 TTCCTCCAAATCAAATCAAATCAAATC 57.561 29.630 0.00 0.00 0.00 2.17
676 688 8.595421 TCCTCCAAATCAAATCAAATCAAATCA 58.405 29.630 0.00 0.00 0.00 2.57
677 689 9.221933 CCTCCAAATCAAATCAAATCAAATCAA 57.778 29.630 0.00 0.00 0.00 2.57
840 852 2.743183 GCAGCATATCAGTCGGAGGTTT 60.743 50.000 0.00 0.00 0.00 3.27
881 902 5.986936 GACTTTTCGAAATCTCGTTTTCCT 58.013 37.500 12.12 0.00 45.62 3.36
962 983 4.382320 TCCTCCGCCCGTTTTCCG 62.382 66.667 0.00 0.00 0.00 4.30
1050 1071 2.115291 GCAAATGCCCCTCGACTCC 61.115 63.158 0.00 0.00 34.31 3.85
1263 1284 3.488721 GCGAGAAGATGCGTAAGTTCCTA 60.489 47.826 0.00 0.00 41.68 2.94
1413 1437 4.499037 TCGTGTATGTGAGGATTATCGG 57.501 45.455 0.00 0.00 0.00 4.18
1433 1457 2.288763 GGTGGTTATGTTGCAAAGGTGG 60.289 50.000 0.00 0.00 0.00 4.61
1549 1574 4.762289 AATGCTGGCTAGTAGTTTAGCT 57.238 40.909 17.35 0.00 44.32 3.32
1557 1582 4.323257 GGCTAGTAGTTTAGCTTTGGGTGA 60.323 45.833 0.00 0.00 44.32 4.02
1558 1583 5.429130 GCTAGTAGTTTAGCTTTGGGTGAT 58.571 41.667 0.00 0.00 42.18 3.06
1559 1584 5.880887 GCTAGTAGTTTAGCTTTGGGTGATT 59.119 40.000 0.00 0.00 42.18 2.57
1560 1585 6.374613 GCTAGTAGTTTAGCTTTGGGTGATTT 59.625 38.462 0.00 0.00 42.18 2.17
1561 1586 6.819397 AGTAGTTTAGCTTTGGGTGATTTC 57.181 37.500 0.00 0.00 0.00 2.17
1562 1587 6.543735 AGTAGTTTAGCTTTGGGTGATTTCT 58.456 36.000 0.00 0.00 0.00 2.52
1563 1588 5.712152 AGTTTAGCTTTGGGTGATTTCTG 57.288 39.130 0.00 0.00 0.00 3.02
1671 1816 8.146412 CAGTGTGATGAGTGATATTAGGATTGA 58.854 37.037 0.00 0.00 0.00 2.57
1835 1980 1.704628 TGAAAGTGGGATGCTGGAAGA 59.295 47.619 0.00 0.00 34.07 2.87
1846 1991 3.845781 TGCTGGAAGATCTAACCCATC 57.154 47.619 13.91 9.78 34.07 3.51
1921 2066 9.453325 CATTGTTTTTGATGGAAAGAAAAATGG 57.547 29.630 0.00 0.00 32.71 3.16
2150 2295 1.554836 TTGGTGTTATGGGCATGTGG 58.445 50.000 0.00 0.00 0.00 4.17
2311 2456 7.974243 TTGAATGATTTGTCAGCATATTTCG 57.026 32.000 0.00 0.00 0.00 3.46
2363 2508 2.943036 ATTGTAGGTTGACACGGGTT 57.057 45.000 0.00 0.00 0.00 4.11
2471 2616 2.030185 CACGTCGGTAGAATATCAGGGG 60.030 54.545 0.00 0.00 0.00 4.79
2713 2864 2.285442 CTCCCCTTCCCCGACCTT 60.285 66.667 0.00 0.00 0.00 3.50
2796 2947 0.405973 GGCTTCTCTTCCCCAACCTT 59.594 55.000 0.00 0.00 0.00 3.50
2900 3249 0.751277 TGTGTGCCCTTGTTCCTGTG 60.751 55.000 0.00 0.00 0.00 3.66
2918 3267 5.013391 TCCTGTGCATATGACATCCATACAT 59.987 40.000 6.97 0.00 40.29 2.29
2964 3313 5.545658 TGCTTAAGCTGTTATTGCACTAC 57.454 39.130 26.90 0.00 42.66 2.73
3263 3613 6.645306 TGGTTATCGTTCATGGTTTCTGATA 58.355 36.000 0.00 0.00 0.00 2.15
3348 3698 8.850007 ATTTGGACTTTCTAGGAAGTTCTTAC 57.150 34.615 20.95 7.28 39.84 2.34
3368 3718 4.380843 ACAATGGATAGTGGTGGTCAAA 57.619 40.909 0.00 0.00 0.00 2.69
3933 4291 0.030638 CAAACGTGCTTCCCAAGTGG 59.969 55.000 0.00 0.00 36.26 4.00
3949 4307 4.319177 CAAGTGGAAGATCGGAAAAGAGT 58.681 43.478 0.00 0.00 0.00 3.24
4128 4486 0.811915 ACTACGCACAGAAGATCGCT 59.188 50.000 0.00 0.00 0.00 4.93
4141 4499 2.183679 AGATCGCTCTTCTGGGAGTTT 58.816 47.619 0.00 0.00 35.89 2.66
4454 4814 8.547967 TTCATAGACACTGGTATCTTTGTTTC 57.452 34.615 0.97 0.00 0.00 2.78
4488 4848 4.641396 CGGAGGGCTGTTATCATCATTAA 58.359 43.478 0.00 0.00 0.00 1.40
4994 5363 6.103205 ACCATTCCAAGAATCATACCTACCAT 59.897 38.462 0.00 0.00 0.00 3.55
5054 5423 1.159713 TGCTGACAGCTGTTTCACCG 61.160 55.000 26.94 5.57 42.97 4.94
5055 5424 1.845809 GCTGACAGCTGTTTCACCGG 61.846 60.000 22.65 13.62 38.45 5.28
5056 5425 0.249868 CTGACAGCTGTTTCACCGGA 60.250 55.000 22.65 0.00 0.00 5.14
5363 5758 6.699575 TCACTGAGAAGATCGTCATTGATA 57.300 37.500 11.35 0.00 30.03 2.15
5694 6092 4.700700 TCACAGATCTACTATCCGTCGAA 58.299 43.478 0.00 0.00 0.00 3.71
5730 6129 8.362464 TGTATTGTTAGAGGTATTGACAGAGT 57.638 34.615 0.00 0.00 0.00 3.24
5973 6377 1.202627 TGTTGGAAAGTTTGCATGGGC 60.203 47.619 10.84 3.20 41.68 5.36
6117 6521 5.825151 TGATGTACTCACTCTATCACTGAGG 59.175 44.000 0.00 0.00 36.51 3.86
6221 6625 2.858745 AGTGCAAAAGTGTATCCGGTT 58.141 42.857 0.00 0.00 0.00 4.44
6365 7698 4.220821 TCGATCATATGCTTTCTAGTCCCC 59.779 45.833 0.00 0.00 0.00 4.81
6367 7700 3.941629 TCATATGCTTTCTAGTCCCCCT 58.058 45.455 0.00 0.00 0.00 4.79
6401 7734 8.718102 ATATAAGAGCGTTTTTGACACTACAT 57.282 30.769 0.00 0.00 0.00 2.29
6402 7735 5.751243 AAGAGCGTTTTTGACACTACATT 57.249 34.783 0.00 0.00 0.00 2.71
6647 7980 1.068055 AGTTACGTTCTAGGTGGTGCG 60.068 52.381 0.00 0.00 0.00 5.34
6651 7984 0.108804 CGTTCTAGGTGGTGCGTGAT 60.109 55.000 0.00 0.00 0.00 3.06
6687 8020 4.462483 GGAAGCTTCATTGTTCCCATACAA 59.538 41.667 27.02 0.00 41.81 2.41
6754 8087 6.927416 TGCATTCTCTCATTGCAAAGTTAAT 58.073 32.000 1.71 0.00 42.95 1.40
6829 8162 8.866956 CATGTTCTATTGATTTTCCAAAGCTTC 58.133 33.333 0.00 0.00 0.00 3.86
6879 8212 6.530601 AGGTTAGTAAAATATGGGGCTGAT 57.469 37.500 0.00 0.00 0.00 2.90
7018 8353 8.638565 GCAGTCATTTGAATGTTTAATGTGTAC 58.361 33.333 9.45 0.00 41.66 2.90
7090 8426 8.514330 AAAGCCGGTTCATATATGTTTTTCTA 57.486 30.769 12.42 0.00 0.00 2.10
7216 8552 5.751243 ACGTTTTAAAATGCTGACTGACT 57.249 34.783 18.08 0.00 0.00 3.41
7431 8767 7.523293 TGTTTGGTTGATATTTGACATGAGT 57.477 32.000 0.00 0.00 0.00 3.41
7508 8844 7.931948 ACTACCTCCATTCCAAAATATAAGACG 59.068 37.037 0.00 0.00 0.00 4.18
7549 8885 9.723601 AAAACGTCTTATATTTGTACCTACCAA 57.276 29.630 0.00 0.00 0.00 3.67
7550 8886 9.723601 AAACGTCTTATATTTGTACCTACCAAA 57.276 29.630 0.00 0.00 0.00 3.28
7551 8887 9.723601 AACGTCTTATATTTGTACCTACCAAAA 57.276 29.630 0.00 0.00 0.00 2.44
7552 8888 9.154847 ACGTCTTATATTTGTACCTACCAAAAC 57.845 33.333 0.00 0.00 0.00 2.43
7553 8889 8.323140 CGTCTTATATTTGTACCTACCAAAACG 58.677 37.037 0.00 0.00 0.00 3.60
7554 8890 9.154847 GTCTTATATTTGTACCTACCAAAACGT 57.845 33.333 0.00 0.00 0.00 3.99
7555 8891 9.369904 TCTTATATTTGTACCTACCAAAACGTC 57.630 33.333 0.00 0.00 0.00 4.34
7556 8892 9.374838 CTTATATTTGTACCTACCAAAACGTCT 57.625 33.333 0.00 0.00 0.00 4.18
7557 8893 9.723601 TTATATTTGTACCTACCAAAACGTCTT 57.276 29.630 0.00 0.00 0.00 3.01
7559 8895 9.895138 ATATTTGTACCTACCAAAACGTCTTAT 57.105 29.630 0.00 0.00 0.00 1.73
7561 8897 9.895138 ATTTGTACCTACCAAAACGTCTTATAT 57.105 29.630 0.00 0.00 0.00 0.86
7562 8898 9.723601 TTTGTACCTACCAAAACGTCTTATATT 57.276 29.630 0.00 0.00 0.00 1.28
7563 8899 9.723601 TTGTACCTACCAAAACGTCTTATATTT 57.276 29.630 0.00 0.00 0.00 1.40
7564 8900 9.153721 TGTACCTACCAAAACGTCTTATATTTG 57.846 33.333 0.00 0.00 33.62 2.32
7565 8901 7.080353 ACCTACCAAAACGTCTTATATTTGC 57.920 36.000 3.19 0.00 32.73 3.68
7566 8902 6.655848 ACCTACCAAAACGTCTTATATTTGCA 59.344 34.615 3.19 0.00 32.73 4.08
7567 8903 6.964934 CCTACCAAAACGTCTTATATTTGCAC 59.035 38.462 3.19 0.00 32.73 4.57
7568 8904 5.705902 ACCAAAACGTCTTATATTTGCACC 58.294 37.500 3.19 0.00 32.73 5.01
7569 8905 5.475564 ACCAAAACGTCTTATATTTGCACCT 59.524 36.000 3.19 0.00 32.73 4.00
7570 8906 6.655848 ACCAAAACGTCTTATATTTGCACCTA 59.344 34.615 3.19 0.00 32.73 3.08
7571 8907 6.964934 CCAAAACGTCTTATATTTGCACCTAC 59.035 38.462 3.19 0.00 32.73 3.18
7572 8908 6.673154 AAACGTCTTATATTTGCACCTACC 57.327 37.500 0.00 0.00 0.00 3.18
7573 8909 5.347620 ACGTCTTATATTTGCACCTACCA 57.652 39.130 0.00 0.00 0.00 3.25
7694 9030 2.550180 GCCCGCAAAAGAGATAGAATCC 59.450 50.000 0.00 0.00 0.00 3.01
7770 9106 4.746535 TTTGGCGTGATTGAGAGGTATA 57.253 40.909 0.00 0.00 0.00 1.47
7817 9153 4.202620 TGGTCTTGATCCCAACCATTTACA 60.203 41.667 6.18 0.00 0.00 2.41
7818 9154 4.770010 GGTCTTGATCCCAACCATTTACAA 59.230 41.667 0.00 0.00 0.00 2.41
7819 9155 5.336451 GGTCTTGATCCCAACCATTTACAAC 60.336 44.000 0.00 0.00 0.00 3.32
7869 9205 1.000955 GTGCTGTAGTGCTGTGTACCT 59.999 52.381 0.00 0.00 0.00 3.08
7870 9206 1.272490 TGCTGTAGTGCTGTGTACCTC 59.728 52.381 0.00 0.00 0.00 3.85
7872 9208 2.171840 CTGTAGTGCTGTGTACCTCCT 58.828 52.381 0.00 0.00 0.00 3.69
7873 9209 2.563179 CTGTAGTGCTGTGTACCTCCTT 59.437 50.000 0.00 0.00 0.00 3.36
7874 9210 3.762288 CTGTAGTGCTGTGTACCTCCTTA 59.238 47.826 0.00 0.00 0.00 2.69
7875 9211 4.350245 TGTAGTGCTGTGTACCTCCTTAT 58.650 43.478 0.00 0.00 0.00 1.73
7876 9212 5.512298 TGTAGTGCTGTGTACCTCCTTATA 58.488 41.667 0.00 0.00 0.00 0.98
7877 9213 5.593095 TGTAGTGCTGTGTACCTCCTTATAG 59.407 44.000 0.00 0.00 0.00 1.31
7880 9216 3.052414 TGCTGTGTACCTCCTTATAGGGA 60.052 47.826 3.21 3.21 41.32 4.20
7925 9278 5.754890 CCTAATTTTAATGTCTTGCCCATGC 59.245 40.000 0.00 0.00 38.26 4.06
8476 9829 3.315470 AGCGAATACGAGATCTGCTGTTA 59.685 43.478 0.00 0.00 42.66 2.41
8522 9875 7.435488 CACCTAGTGATAGAAATTTAGTGTCGG 59.565 40.741 0.00 0.00 35.23 4.79
8597 9950 1.191425 TCGTTTGAATGCAACGACGAG 59.809 47.619 8.92 0.00 40.38 4.18
8611 9964 3.713288 ACGACGAGTGAATGAAGTCAAA 58.287 40.909 0.00 0.00 32.57 2.69
8722 10076 2.309528 TCGTGACATTCCTATGTGGC 57.690 50.000 0.00 0.00 44.90 5.01
8740 10094 3.377172 GTGGCCCAGTGTATATGTTGTTC 59.623 47.826 0.00 0.00 0.00 3.18
8787 10141 2.674852 CGATACAGCAAAGCAGACACAT 59.325 45.455 0.00 0.00 0.00 3.21
8788 10142 3.484721 CGATACAGCAAAGCAGACACATG 60.485 47.826 0.00 0.00 0.00 3.21
8792 10146 3.438087 ACAGCAAAGCAGACACATGTATC 59.562 43.478 0.00 0.00 0.00 2.24
8793 10147 3.437741 CAGCAAAGCAGACACATGTATCA 59.562 43.478 6.93 0.00 0.00 2.15
8794 10148 4.095932 CAGCAAAGCAGACACATGTATCAT 59.904 41.667 6.93 0.00 0.00 2.45
8798 10152 7.172190 AGCAAAGCAGACACATGTATCATATAC 59.828 37.037 6.93 0.00 0.00 1.47
8799 10153 7.172190 GCAAAGCAGACACATGTATCATATACT 59.828 37.037 6.93 0.00 0.00 2.12
8801 10155 6.929625 AGCAGACACATGTATCATATACTCC 58.070 40.000 6.93 0.00 0.00 3.85
8802 10156 6.071108 AGCAGACACATGTATCATATACTCCC 60.071 42.308 6.93 0.00 0.00 4.30
8803 10157 6.071108 GCAGACACATGTATCATATACTCCCT 60.071 42.308 6.93 0.00 0.00 4.20
8804 10158 7.542890 CAGACACATGTATCATATACTCCCTC 58.457 42.308 6.93 0.00 0.00 4.30
8805 10159 6.665680 AGACACATGTATCATATACTCCCTCC 59.334 42.308 6.93 0.00 0.00 4.30
8806 10160 5.419155 ACACATGTATCATATACTCCCTCCG 59.581 44.000 0.00 0.00 0.00 4.63
8808 10162 3.362706 TGTATCATATACTCCCTCCGCC 58.637 50.000 0.00 0.00 0.00 6.13
8809 10163 1.867363 ATCATATACTCCCTCCGCCC 58.133 55.000 0.00 0.00 0.00 6.13
8810 10164 0.611062 TCATATACTCCCTCCGCCCG 60.611 60.000 0.00 0.00 0.00 6.13
8812 10166 0.113776 ATATACTCCCTCCGCCCGAA 59.886 55.000 0.00 0.00 0.00 4.30
8813 10167 0.106066 TATACTCCCTCCGCCCGAAA 60.106 55.000 0.00 0.00 0.00 3.46
8816 10170 1.745489 CTCCCTCCGCCCGAAAAAG 60.745 63.158 0.00 0.00 0.00 2.27
8818 10172 1.602605 CCCTCCGCCCGAAAAAGTT 60.603 57.895 0.00 0.00 0.00 2.66
8819 10173 1.176619 CCCTCCGCCCGAAAAAGTTT 61.177 55.000 0.00 0.00 0.00 2.66
8820 10174 0.039527 CCTCCGCCCGAAAAAGTTTG 60.040 55.000 0.00 0.00 0.00 2.93
8821 10175 0.666374 CTCCGCCCGAAAAAGTTTGT 59.334 50.000 0.00 0.00 0.00 2.83
8824 10178 0.318360 CGCCCGAAAAAGTTTGTCCC 60.318 55.000 0.00 0.00 0.00 4.46
8825 10179 0.747852 GCCCGAAAAAGTTTGTCCCA 59.252 50.000 0.00 0.00 0.00 4.37
8826 10180 1.343142 GCCCGAAAAAGTTTGTCCCAT 59.657 47.619 0.00 0.00 0.00 4.00
8827 10181 2.866065 GCCCGAAAAAGTTTGTCCCATG 60.866 50.000 0.00 0.00 0.00 3.66
8829 10183 2.035832 CCGAAAAAGTTTGTCCCATGCT 59.964 45.455 0.00 0.00 0.00 3.79
8830 10184 3.492482 CCGAAAAAGTTTGTCCCATGCTT 60.492 43.478 0.00 0.00 0.00 3.91
8831 10185 3.490526 CGAAAAAGTTTGTCCCATGCTTG 59.509 43.478 0.00 0.00 0.00 4.01
8832 10186 4.441792 GAAAAAGTTTGTCCCATGCTTGT 58.558 39.130 0.00 0.00 0.00 3.16
8833 10187 3.733443 AAAGTTTGTCCCATGCTTGTC 57.267 42.857 0.00 0.00 0.00 3.18
8834 10188 1.620822 AGTTTGTCCCATGCTTGTCC 58.379 50.000 0.00 0.00 0.00 4.02
8835 10189 0.603065 GTTTGTCCCATGCTTGTCCC 59.397 55.000 0.00 0.00 0.00 4.46
8836 10190 0.482446 TTTGTCCCATGCTTGTCCCT 59.518 50.000 0.00 0.00 0.00 4.20
8846 10209 4.209538 CATGCTTGTCCCTCAAATGGATA 58.790 43.478 0.00 0.00 35.48 2.59
8854 10217 7.187824 TGTCCCTCAAATGGATATATCTAGC 57.812 40.000 12.42 0.00 33.65 3.42
8855 10218 6.730507 TGTCCCTCAAATGGATATATCTAGCA 59.269 38.462 12.42 2.95 33.65 3.49
8856 10219 7.044798 GTCCCTCAAATGGATATATCTAGCAC 58.955 42.308 12.42 0.00 33.65 4.40
8860 10223 9.593134 CCTCAAATGGATATATCTAGCACTAAC 57.407 37.037 12.42 0.00 0.00 2.34
8866 10229 7.896811 TGGATATATCTAGCACTAACTTGGTG 58.103 38.462 12.42 0.97 37.70 4.17
8883 10246 5.415701 ACTTGGTGCTAGATACAACCATTTG 59.584 40.000 0.00 0.00 38.83 2.32
8884 10247 5.172687 TGGTGCTAGATACAACCATTTGA 57.827 39.130 0.00 0.00 36.48 2.69
8885 10248 5.185454 TGGTGCTAGATACAACCATTTGAG 58.815 41.667 0.00 0.00 36.48 3.02
8886 10249 4.576463 GGTGCTAGATACAACCATTTGAGG 59.424 45.833 0.00 0.00 36.48 3.86
8887 10250 4.576463 GTGCTAGATACAACCATTTGAGGG 59.424 45.833 0.00 0.00 36.48 4.30
8888 10251 4.473196 TGCTAGATACAACCATTTGAGGGA 59.527 41.667 0.00 0.00 36.48 4.20
8889 10252 4.816925 GCTAGATACAACCATTTGAGGGAC 59.183 45.833 0.00 0.00 36.48 4.46
8890 10253 4.927267 AGATACAACCATTTGAGGGACA 57.073 40.909 0.00 0.00 36.48 4.02
8891 10254 5.255397 AGATACAACCATTTGAGGGACAA 57.745 39.130 0.00 0.00 36.48 3.18
8892 10255 5.256474 AGATACAACCATTTGAGGGACAAG 58.744 41.667 0.00 0.00 39.77 3.16
8894 10257 1.962807 CAACCATTTGAGGGACAAGCA 59.037 47.619 0.00 0.00 39.77 3.91
8895 10258 2.564062 CAACCATTTGAGGGACAAGCAT 59.436 45.455 0.00 0.00 39.77 3.79
8897 10260 3.242011 ACCATTTGAGGGACAAGCATTT 58.758 40.909 0.00 0.00 39.77 2.32
8898 10261 3.647590 ACCATTTGAGGGACAAGCATTTT 59.352 39.130 0.00 0.00 39.77 1.82
8901 10264 1.533625 TGAGGGACAAGCATTTTCGG 58.466 50.000 0.00 0.00 0.00 4.30
8906 10280 0.179189 GACAAGCATTTTCGGCGGAG 60.179 55.000 7.21 0.00 36.08 4.63
8907 10281 0.605319 ACAAGCATTTTCGGCGGAGA 60.605 50.000 7.21 0.00 36.08 3.71
8913 10287 2.803492 GCATTTTCGGCGGAGAGAGTAT 60.803 50.000 7.21 0.00 0.00 2.12
8995 10370 7.787028 AGAGGTAGATTCACTCATTTTACTCC 58.213 38.462 0.00 0.00 33.76 3.85
8996 10371 6.574350 AGGTAGATTCACTCATTTTACTCCG 58.426 40.000 0.00 0.00 0.00 4.63
8998 10373 7.341256 AGGTAGATTCACTCATTTTACTCCGTA 59.659 37.037 0.00 0.00 0.00 4.02
9006 10383 7.338703 TCACTCATTTTACTCCGTATGTAGTCT 59.661 37.037 0.00 0.00 0.00 3.24
9013 10390 8.613060 TTTACTCCGTATGTAGTCTATAGTGG 57.387 38.462 0.00 0.00 0.00 4.00
9049 10426 8.919777 AAGATTTATATTTAGAAACGGAGGGG 57.080 34.615 0.00 0.00 0.00 4.79
9055 10433 4.932911 TTTAGAAACGGAGGGGGTATTT 57.067 40.909 0.00 0.00 0.00 1.40
9090 10468 2.041485 TGATCCTTTGACTTGCCCATGA 59.959 45.455 0.00 0.00 0.00 3.07
9104 10482 7.175104 ACTTGCCCATGAAAATTACTCTCTTA 58.825 34.615 0.00 0.00 0.00 2.10
9110 10488 8.345565 CCCATGAAAATTACTCTCTTAATTCCG 58.654 37.037 0.00 0.00 31.67 4.30
9124 10502 6.954232 TCTTAATTCCGAAATACTCCCAAGT 58.046 36.000 0.00 0.00 39.66 3.16
9125 10503 6.821665 TCTTAATTCCGAAATACTCCCAAGTG 59.178 38.462 0.00 0.00 36.92 3.16
9126 10504 4.837093 ATTCCGAAATACTCCCAAGTGA 57.163 40.909 0.00 0.00 36.92 3.41
9127 10505 3.604875 TCCGAAATACTCCCAAGTGAC 57.395 47.619 0.00 0.00 36.92 3.67
9128 10506 3.170717 TCCGAAATACTCCCAAGTGACT 58.829 45.455 0.00 0.00 36.92 3.41
9129 10507 3.194968 TCCGAAATACTCCCAAGTGACTC 59.805 47.826 0.00 0.00 36.92 3.36
9130 10508 3.056107 CCGAAATACTCCCAAGTGACTCA 60.056 47.826 0.00 0.00 36.92 3.41
9131 10509 4.562757 CCGAAATACTCCCAAGTGACTCAA 60.563 45.833 0.00 0.00 36.92 3.02
9132 10510 4.389077 CGAAATACTCCCAAGTGACTCAAC 59.611 45.833 0.00 0.00 36.92 3.18
9133 10511 5.552178 GAAATACTCCCAAGTGACTCAACT 58.448 41.667 0.00 0.00 36.92 3.16
9134 10512 5.568620 AATACTCCCAAGTGACTCAACTT 57.431 39.130 0.00 0.00 41.08 2.66
9135 10513 3.933861 ACTCCCAAGTGACTCAACTTT 57.066 42.857 0.00 0.00 38.34 2.66
9136 10514 6.681729 ATACTCCCAAGTGACTCAACTTTA 57.318 37.500 0.00 0.00 38.34 1.85
9137 10515 5.568620 ACTCCCAAGTGACTCAACTTTAT 57.431 39.130 0.00 0.00 38.34 1.40
9138 10516 6.681729 ACTCCCAAGTGACTCAACTTTATA 57.318 37.500 0.00 0.00 38.34 0.98
9139 10517 7.259088 ACTCCCAAGTGACTCAACTTTATAT 57.741 36.000 0.00 0.00 38.34 0.86
9140 10518 7.690256 ACTCCCAAGTGACTCAACTTTATATT 58.310 34.615 0.00 0.00 38.34 1.28
9141 10519 8.822805 ACTCCCAAGTGACTCAACTTTATATTA 58.177 33.333 0.00 0.00 38.34 0.98
9142 10520 9.838339 CTCCCAAGTGACTCAACTTTATATTAT 57.162 33.333 0.00 0.00 38.34 1.28
9186 10564 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
9192 10570 0.978907 TTTGGGACGGAGGGAGTAAC 59.021 55.000 0.00 0.00 0.00 2.50
9337 10732 8.779354 ATCTTGGTACATTTTTCTGTAGACTC 57.221 34.615 0.00 0.00 39.30 3.36
9420 10815 9.250624 GTATTTGAGTTATGATGAGTGAGGTAC 57.749 37.037 0.00 0.00 0.00 3.34
9523 10929 5.350365 CAGGCATGATTGTTTCAATTTCCAG 59.650 40.000 0.00 0.00 38.03 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.855349 CGTGCACGAGAATAGGATGC 59.145 55.000 34.93 0.00 43.02 3.91
139 140 3.324035 GCCAGAATAAGCGGCGAG 58.676 61.111 12.98 0.00 35.79 5.03
208 209 2.283617 CACAGAAAGATCCGCTCAATCG 59.716 50.000 0.00 0.00 0.00 3.34
228 229 1.130054 AAGGAGTCAGAGGCTTGCCA 61.130 55.000 14.54 0.00 0.00 4.92
267 270 1.616327 AGGATGGGTGCCAGTGCTA 60.616 57.895 0.00 0.00 36.75 3.49
282 285 3.518998 GTCGCGCTGCCTAGAGGA 61.519 66.667 5.56 0.00 37.39 3.71
283 286 4.577246 GGTCGCGCTGCCTAGAGG 62.577 72.222 5.56 0.00 38.53 3.69
370 373 1.329256 GCCCTACGAAGAGGATAGCA 58.671 55.000 0.00 0.00 39.15 3.49
396 400 0.250124 AAAACATCGAGTGACGGCCA 60.250 50.000 2.24 0.00 42.82 5.36
569 575 6.771267 CCTATCACCAGAATTTAGGGTAAACC 59.229 42.308 2.66 0.00 40.67 3.27
576 582 6.672266 TCTAGCCTATCACCAGAATTTAGG 57.328 41.667 0.00 0.00 33.93 2.69
637 644 7.896383 TGATTTGGAGGAATTTTATAGGGTG 57.104 36.000 0.00 0.00 0.00 4.61
672 684 9.444600 CCTCCTTTGATTTGATTTGATTTGATT 57.555 29.630 0.00 0.00 0.00 2.57
673 685 7.551617 GCCTCCTTTGATTTGATTTGATTTGAT 59.448 33.333 0.00 0.00 0.00 2.57
674 686 6.875195 GCCTCCTTTGATTTGATTTGATTTGA 59.125 34.615 0.00 0.00 0.00 2.69
675 687 6.093082 GGCCTCCTTTGATTTGATTTGATTTG 59.907 38.462 0.00 0.00 0.00 2.32
676 688 6.013119 AGGCCTCCTTTGATTTGATTTGATTT 60.013 34.615 0.00 0.00 0.00 2.17
677 689 5.486419 AGGCCTCCTTTGATTTGATTTGATT 59.514 36.000 0.00 0.00 0.00 2.57
678 690 5.028131 AGGCCTCCTTTGATTTGATTTGAT 58.972 37.500 0.00 0.00 0.00 2.57
881 902 2.171840 CAGGAAAGGAGGAGACGAAGA 58.828 52.381 0.00 0.00 0.00 2.87
925 946 4.966805 AGGAGGGTTTTATTCCATACGAGA 59.033 41.667 0.00 0.00 33.32 4.04
984 1005 4.108299 ATGATTGGTGCCGCCGGA 62.108 61.111 7.68 0.00 41.21 5.14
1263 1284 3.648507 AGCTCTTTCTTCATCCTGCAT 57.351 42.857 0.00 0.00 0.00 3.96
1413 1437 2.625790 TCCACCTTTGCAACATAACCAC 59.374 45.455 0.00 0.00 0.00 4.16
1433 1457 1.644786 CCTTTGGTCACCCGCGATTC 61.645 60.000 8.23 0.00 0.00 2.52
1549 1574 3.081061 CGGACATCAGAAATCACCCAAA 58.919 45.455 0.00 0.00 0.00 3.28
1559 1584 9.489084 CCTAACATTATAAATCGGACATCAGAA 57.511 33.333 0.00 0.00 0.00 3.02
1560 1585 8.647796 ACCTAACATTATAAATCGGACATCAGA 58.352 33.333 0.00 0.00 0.00 3.27
1561 1586 8.833231 ACCTAACATTATAAATCGGACATCAG 57.167 34.615 0.00 0.00 0.00 2.90
1562 1587 9.923143 CTACCTAACATTATAAATCGGACATCA 57.077 33.333 0.00 0.00 0.00 3.07
1563 1588 8.870879 GCTACCTAACATTATAAATCGGACATC 58.129 37.037 0.00 0.00 0.00 3.06
1687 1832 8.301252 AGTAAACTACAAACCCAAATTTGACT 57.699 30.769 19.86 7.07 41.28 3.41
1835 1980 2.501723 AGTCTGCAACGATGGGTTAGAT 59.498 45.455 0.00 0.00 36.49 1.98
1921 2066 1.060743 GGTCCTTCCCCCTATGGTCC 61.061 65.000 0.00 0.00 0.00 4.46
2311 2456 1.818674 CCACAAAGTAAGGGCATGGAC 59.181 52.381 0.00 0.00 0.00 4.02
2363 2508 1.903404 TCTGCGCTGACTGTCTCCA 60.903 57.895 13.46 0.56 0.00 3.86
2471 2616 4.151867 CCTAGGCGTACACTCAACTTTTTC 59.848 45.833 0.00 0.00 0.00 2.29
2713 2864 3.256960 GGGGAAGGACTGGTGGCA 61.257 66.667 0.00 0.00 0.00 4.92
2796 2947 4.289238 AGAAGAGACGAGGAGTAACTCA 57.711 45.455 0.00 0.00 37.34 3.41
2900 3249 5.582269 AGCGTTATGTATGGATGTCATATGC 59.418 40.000 0.00 0.00 40.15 3.14
2918 3267 1.470285 CCTAGGCGTGCTTAAGCGTTA 60.470 52.381 21.97 2.20 45.83 3.18
2964 3313 2.429069 GCGTTTTGCCTCCGCTTG 60.429 61.111 0.00 0.00 43.81 4.01
3263 3613 9.310449 TCCTCTTAAGTCTTAACAACATCTAGT 57.690 33.333 1.63 0.00 0.00 2.57
3348 3698 4.949238 TCATTTGACCACCACTATCCATTG 59.051 41.667 0.00 0.00 0.00 2.82
3601 3952 2.105821 AGATCGACCAACCACCAAAAGA 59.894 45.455 0.00 0.00 0.00 2.52
3768 4119 6.821665 GTGAGGACACTAAAATGCATACCTTA 59.178 38.462 0.00 0.00 42.99 2.69
3933 4291 5.632347 TGTTCGTTACTCTTTTCCGATCTTC 59.368 40.000 0.00 0.00 0.00 2.87
3949 4307 5.178623 GGTTGATGATTCACTGTGTTCGTTA 59.821 40.000 7.79 2.56 0.00 3.18
4101 4459 3.319972 TCTTCTGTGCGTAGTTTAGTGGT 59.680 43.478 0.00 0.00 0.00 4.16
4128 4486 3.045634 TCTTGGTCAAACTCCCAGAAGA 58.954 45.455 0.00 0.00 31.04 2.87
4141 4499 2.110188 AGGAGTGAGTACCTCTTGGTCA 59.890 50.000 0.00 0.00 44.78 4.02
4154 4512 3.743521 TGGATCAACAAACAGGAGTGAG 58.256 45.455 0.00 0.00 0.00 3.51
4168 4526 8.522830 GGTAAAAGAACAGATGAATTGGATCAA 58.477 33.333 0.00 0.00 32.06 2.57
4418 4778 7.453393 ACCAGTGTCTATGAAATCAGAAAGAA 58.547 34.615 0.00 0.00 0.00 2.52
4454 4814 1.374252 CCCTCCGGAGACACAAACG 60.374 63.158 33.39 12.91 0.00 3.60
4488 4848 7.453393 TGACAGGACATAATCTTTGAAGTCTT 58.547 34.615 0.00 0.00 0.00 3.01
4565 4925 2.095110 TGGTGACGTTATGGACTACACG 60.095 50.000 0.00 0.00 38.62 4.49
4994 5363 8.542080 TCATTTCTTCTATTTAACCTCCGGTAA 58.458 33.333 0.00 0.00 33.12 2.85
5321 5716 5.688621 CAGTGAATCAAATCCAAACACTGTG 59.311 40.000 6.19 6.19 44.48 3.66
5434 5830 8.783833 AGAGCATGATTGGAATACATATGTAC 57.216 34.615 17.69 6.35 32.72 2.90
5730 6129 3.646162 ACATTAGTATGGGCGGAGAATCA 59.354 43.478 0.00 0.00 34.28 2.57
5773 6173 1.998315 CAGCTCGACAGTTTCTGGATG 59.002 52.381 1.90 0.00 35.51 3.51
5978 6382 9.135189 AGGCATCTATAAATAAATGCAGTTCAA 57.865 29.630 1.02 0.00 44.90 2.69
6117 6521 7.592885 TGGTACTGATAATTCCCTGTAGTAC 57.407 40.000 0.00 0.00 38.67 2.73
6221 6625 4.754114 TGTTGACACGTCATGAATCATTCA 59.246 37.500 1.59 1.59 45.01 2.57
6266 7599 3.119291 CGACATTCGATCTTGAAGGGAG 58.881 50.000 0.00 0.00 43.74 4.30
6647 7980 0.615331 TCCACTTCAGGCCAGATCAC 59.385 55.000 5.01 0.00 0.00 3.06
6651 7984 1.130054 AGCTTCCACTTCAGGCCAGA 61.130 55.000 5.01 0.00 0.00 3.86
6687 8020 3.563808 ACAAGTGTTTATGTGTGCATCGT 59.436 39.130 0.00 0.00 36.58 3.73
6754 8087 4.202514 TGTGAATTGAATGACACCAGGGTA 60.203 41.667 11.27 0.00 33.08 3.69
7216 8552 4.211125 TCACCCTAGAACAAATGCACAAA 58.789 39.130 0.00 0.00 0.00 2.83
7298 8634 4.601406 ATTGGCAAAAGGAGGTATGGTA 57.399 40.909 3.01 0.00 0.00 3.25
7405 8741 8.084073 ACTCATGTCAAATATCAACCAAACAAG 58.916 33.333 0.00 0.00 0.00 3.16
7431 8767 3.092301 TCCATTGACCAACAAACACACA 58.908 40.909 0.00 0.00 42.03 3.72
7549 8885 6.174760 TGGTAGGTGCAAATATAAGACGTTT 58.825 36.000 0.00 0.00 0.00 3.60
7550 8886 5.736813 TGGTAGGTGCAAATATAAGACGTT 58.263 37.500 0.00 0.00 0.00 3.99
7551 8887 5.347620 TGGTAGGTGCAAATATAAGACGT 57.652 39.130 0.00 0.00 0.00 4.34
7552 8888 6.671614 TTTGGTAGGTGCAAATATAAGACG 57.328 37.500 0.00 0.00 0.00 4.18
7553 8889 6.964934 CGTTTTGGTAGGTGCAAATATAAGAC 59.035 38.462 0.00 0.00 0.00 3.01
7554 8890 6.655848 ACGTTTTGGTAGGTGCAAATATAAGA 59.344 34.615 0.00 0.00 0.00 2.10
7555 8891 6.848451 ACGTTTTGGTAGGTGCAAATATAAG 58.152 36.000 0.00 0.00 0.00 1.73
7556 8892 6.655848 AGACGTTTTGGTAGGTGCAAATATAA 59.344 34.615 0.00 0.00 0.00 0.98
7557 8893 6.174760 AGACGTTTTGGTAGGTGCAAATATA 58.825 36.000 0.00 0.00 0.00 0.86
7558 8894 5.007682 AGACGTTTTGGTAGGTGCAAATAT 58.992 37.500 0.00 0.00 0.00 1.28
7559 8895 4.391155 AGACGTTTTGGTAGGTGCAAATA 58.609 39.130 0.00 0.00 0.00 1.40
7560 8896 3.219281 AGACGTTTTGGTAGGTGCAAAT 58.781 40.909 0.00 0.00 0.00 2.32
7561 8897 2.645802 AGACGTTTTGGTAGGTGCAAA 58.354 42.857 0.00 0.00 0.00 3.68
7562 8898 2.335316 AGACGTTTTGGTAGGTGCAA 57.665 45.000 0.00 0.00 0.00 4.08
7563 8899 2.335316 AAGACGTTTTGGTAGGTGCA 57.665 45.000 0.00 0.00 0.00 4.57
7564 8900 6.673154 AATATAAGACGTTTTGGTAGGTGC 57.327 37.500 0.83 0.00 0.00 5.01
7565 8901 8.889849 CAAAATATAAGACGTTTTGGTAGGTG 57.110 34.615 0.83 0.00 38.51 4.00
7572 8908 9.289303 CTCCATTCCAAAATATAAGACGTTTTG 57.711 33.333 0.83 0.74 40.63 2.44
7573 8909 8.466798 CCTCCATTCCAAAATATAAGACGTTTT 58.533 33.333 0.00 0.00 0.00 2.43
7694 9030 2.203422 TGAAACACCCTTGGCCCG 60.203 61.111 0.00 0.00 0.00 6.13
7869 9205 2.853430 TGGCAGGTTTCCCTATAAGGA 58.147 47.619 0.00 0.00 39.89 3.36
7870 9206 3.884037 ATGGCAGGTTTCCCTATAAGG 57.116 47.619 0.00 0.00 39.89 2.69
7872 9208 6.584471 TTAGAATGGCAGGTTTCCCTATAA 57.416 37.500 0.00 0.00 39.89 0.98
7873 9209 6.388689 TCTTTAGAATGGCAGGTTTCCCTATA 59.611 38.462 0.00 0.00 39.89 1.31
7874 9210 5.193728 TCTTTAGAATGGCAGGTTTCCCTAT 59.806 40.000 0.00 0.00 39.89 2.57
7875 9211 4.538490 TCTTTAGAATGGCAGGTTTCCCTA 59.462 41.667 0.00 0.00 39.89 3.53
7876 9212 3.333680 TCTTTAGAATGGCAGGTTTCCCT 59.666 43.478 0.00 0.00 44.02 4.20
7877 9213 3.697166 TCTTTAGAATGGCAGGTTTCCC 58.303 45.455 0.00 0.00 0.00 3.97
7880 9216 5.583932 AGGAATCTTTAGAATGGCAGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
7925 9278 7.672983 TTCTTTTATGAGGTAGCTGTGAAAG 57.327 36.000 0.00 6.96 0.00 2.62
7937 9290 2.023673 TGGCGCCATTCTTTTATGAGG 58.976 47.619 29.03 0.00 0.00 3.86
7944 9297 2.092968 TCTGTAGATGGCGCCATTCTTT 60.093 45.455 40.56 27.04 36.70 2.52
7996 9349 6.317140 TCTTGAAAGATGTCTCCATATTGTGC 59.683 38.462 0.00 0.00 32.99 4.57
8042 9395 9.802039 ATTAAAAACACTATGGTTCTTACCTCA 57.198 29.630 0.00 0.00 45.27 3.86
8112 9465 5.320723 TCATTGTAATTCAATTCACGACGC 58.679 37.500 0.00 0.00 43.33 5.19
8388 9741 4.574599 AACTAAAAACCAGCAAGAGCAG 57.425 40.909 0.00 0.00 45.49 4.24
8476 9829 5.305644 AGGTGGAGCGTTCTGAAATATATCT 59.694 40.000 0.00 0.00 0.00 1.98
8597 9950 6.476380 TCTTTGCATTGTTTGACTTCATTCAC 59.524 34.615 0.00 0.00 0.00 3.18
8611 9964 2.563620 TGCACCATGATCTTTGCATTGT 59.436 40.909 0.00 0.00 40.01 2.71
8713 10066 3.327757 ACATATACACTGGGCCACATAGG 59.672 47.826 0.00 2.59 41.84 2.57
8722 10076 3.309682 CGCAGAACAACATATACACTGGG 59.690 47.826 0.00 0.00 0.00 4.45
8740 10094 1.946768 TCTTTGGAACTTTGTCCGCAG 59.053 47.619 0.00 0.00 40.96 5.18
8787 10141 3.362706 GGCGGAGGGAGTATATGATACA 58.637 50.000 0.00 0.00 0.00 2.29
8788 10142 2.694109 GGGCGGAGGGAGTATATGATAC 59.306 54.545 0.00 0.00 0.00 2.24
8792 10146 0.611062 TCGGGCGGAGGGAGTATATG 60.611 60.000 0.00 0.00 0.00 1.78
8793 10147 0.113776 TTCGGGCGGAGGGAGTATAT 59.886 55.000 0.00 0.00 0.00 0.86
8794 10148 0.106066 TTTCGGGCGGAGGGAGTATA 60.106 55.000 0.00 0.00 0.00 1.47
8798 10152 1.745489 CTTTTTCGGGCGGAGGGAG 60.745 63.158 0.00 0.00 0.00 4.30
8799 10153 2.059345 AACTTTTTCGGGCGGAGGGA 62.059 55.000 0.00 0.00 0.00 4.20
8801 10155 0.039527 CAAACTTTTTCGGGCGGAGG 60.040 55.000 0.00 0.00 0.00 4.30
8802 10156 0.666374 ACAAACTTTTTCGGGCGGAG 59.334 50.000 0.00 0.00 0.00 4.63
8803 10157 0.664224 GACAAACTTTTTCGGGCGGA 59.336 50.000 0.00 0.00 0.00 5.54
8804 10158 0.318360 GGACAAACTTTTTCGGGCGG 60.318 55.000 0.00 0.00 0.00 6.13
8805 10159 0.318360 GGGACAAACTTTTTCGGGCG 60.318 55.000 0.00 0.00 0.00 6.13
8806 10160 0.747852 TGGGACAAACTTTTTCGGGC 59.252 50.000 0.00 0.00 31.92 6.13
8818 10172 4.159096 TTGAGGGACAAGCATGGGACAA 62.159 50.000 0.00 0.00 36.42 3.18
8819 10173 2.670729 TTGAGGGACAAGCATGGGACA 61.671 52.381 0.00 0.00 36.98 4.02
8820 10174 0.038166 TTGAGGGACAAGCATGGGAC 59.962 55.000 0.00 0.00 34.20 4.46
8821 10175 0.776810 TTTGAGGGACAAGCATGGGA 59.223 50.000 0.00 0.00 39.77 4.37
8824 10178 2.449464 TCCATTTGAGGGACAAGCATG 58.551 47.619 0.00 0.00 39.77 4.06
8825 10179 2.905415 TCCATTTGAGGGACAAGCAT 57.095 45.000 0.00 0.00 39.77 3.79
8826 10180 2.905415 ATCCATTTGAGGGACAAGCA 57.095 45.000 0.00 0.00 39.77 3.91
8827 10181 6.479884 AGATATATCCATTTGAGGGACAAGC 58.520 40.000 9.18 0.00 39.77 4.01
8829 10183 7.237471 TGCTAGATATATCCATTTGAGGGACAA 59.763 37.037 9.18 0.00 37.23 3.18
8830 10184 6.730507 TGCTAGATATATCCATTTGAGGGACA 59.269 38.462 9.18 0.00 37.23 4.02
8831 10185 7.044798 GTGCTAGATATATCCATTTGAGGGAC 58.955 42.308 9.18 0.06 37.23 4.46
8832 10186 6.962311 AGTGCTAGATATATCCATTTGAGGGA 59.038 38.462 9.18 0.00 39.14 4.20
8833 10187 7.192852 AGTGCTAGATATATCCATTTGAGGG 57.807 40.000 9.18 0.00 0.00 4.30
8834 10188 9.593134 GTTAGTGCTAGATATATCCATTTGAGG 57.407 37.037 9.18 0.00 0.00 3.86
8854 10217 5.581085 GGTTGTATCTAGCACCAAGTTAGTG 59.419 44.000 0.00 0.00 38.30 2.74
8855 10218 5.247564 TGGTTGTATCTAGCACCAAGTTAGT 59.752 40.000 0.00 0.00 33.25 2.24
8856 10219 5.730550 TGGTTGTATCTAGCACCAAGTTAG 58.269 41.667 0.00 0.00 32.79 2.34
8860 10223 5.647658 TCAAATGGTTGTATCTAGCACCAAG 59.352 40.000 0.00 0.00 36.07 3.61
8863 10226 4.576463 CCTCAAATGGTTGTATCTAGCACC 59.424 45.833 0.00 0.00 36.07 5.01
8866 10229 4.816925 GTCCCTCAAATGGTTGTATCTAGC 59.183 45.833 0.00 0.00 36.07 3.42
8876 10239 2.610438 ATGCTTGTCCCTCAAATGGT 57.390 45.000 0.00 0.00 35.48 3.55
8883 10246 0.171231 GCCGAAAATGCTTGTCCCTC 59.829 55.000 0.00 0.00 0.00 4.30
8884 10247 1.586154 CGCCGAAAATGCTTGTCCCT 61.586 55.000 0.00 0.00 0.00 4.20
8885 10248 1.154035 CGCCGAAAATGCTTGTCCC 60.154 57.895 0.00 0.00 0.00 4.46
8886 10249 1.154035 CCGCCGAAAATGCTTGTCC 60.154 57.895 0.00 0.00 0.00 4.02
8887 10250 0.179189 CTCCGCCGAAAATGCTTGTC 60.179 55.000 0.00 0.00 0.00 3.18
8888 10251 0.605319 TCTCCGCCGAAAATGCTTGT 60.605 50.000 0.00 0.00 0.00 3.16
8889 10252 0.097674 CTCTCCGCCGAAAATGCTTG 59.902 55.000 0.00 0.00 0.00 4.01
8890 10253 0.036388 TCTCTCCGCCGAAAATGCTT 60.036 50.000 0.00 0.00 0.00 3.91
8891 10254 0.460987 CTCTCTCCGCCGAAAATGCT 60.461 55.000 0.00 0.00 0.00 3.79
8892 10255 0.741221 ACTCTCTCCGCCGAAAATGC 60.741 55.000 0.00 0.00 0.00 3.56
8894 10257 4.341520 ACTTATACTCTCTCCGCCGAAAAT 59.658 41.667 0.00 0.00 0.00 1.82
8895 10258 3.698040 ACTTATACTCTCTCCGCCGAAAA 59.302 43.478 0.00 0.00 0.00 2.29
8897 10260 2.877168 GACTTATACTCTCTCCGCCGAA 59.123 50.000 0.00 0.00 0.00 4.30
8898 10261 2.104451 AGACTTATACTCTCTCCGCCGA 59.896 50.000 0.00 0.00 0.00 5.54
8901 10264 5.251601 ACAAAGACTTATACTCTCTCCGC 57.748 43.478 0.00 0.00 0.00 5.54
8907 10281 9.702253 TGGAATCTCTACAAAGACTTATACTCT 57.298 33.333 0.00 0.00 0.00 3.24
8938 10312 9.534565 GCATCTATATACATCCGTATGTGATTT 57.465 33.333 3.56 0.00 45.99 2.17
8941 10315 7.639113 TGCATCTATATACATCCGTATGTGA 57.361 36.000 3.56 0.00 45.99 3.58
8995 10370 8.780846 AGAGATTCCACTATAGACTACATACG 57.219 38.462 6.78 0.00 0.00 3.06
9039 10416 1.078115 ACCAAATACCCCCTCCGTTT 58.922 50.000 0.00 0.00 0.00 3.60
9042 10419 1.544759 GCATACCAAATACCCCCTCCG 60.545 57.143 0.00 0.00 0.00 4.63
9044 10421 2.583143 GTGCATACCAAATACCCCCTC 58.417 52.381 0.00 0.00 0.00 4.30
9104 10482 4.941873 GTCACTTGGGAGTATTTCGGAATT 59.058 41.667 0.00 0.00 33.90 2.17
9110 10488 5.552178 AGTTGAGTCACTTGGGAGTATTTC 58.448 41.667 0.00 0.00 33.90 2.17
9155 10533 8.293867 CGTCCCAAAATAAGTGACTCAAATTTA 58.706 33.333 0.00 0.00 0.00 1.40
9156 10534 7.145323 CGTCCCAAAATAAGTGACTCAAATTT 58.855 34.615 0.00 0.00 0.00 1.82
9157 10535 6.294508 CCGTCCCAAAATAAGTGACTCAAATT 60.295 38.462 0.00 0.00 0.00 1.82
9158 10536 5.183140 CCGTCCCAAAATAAGTGACTCAAAT 59.817 40.000 0.00 0.00 0.00 2.32
9159 10537 4.517453 CCGTCCCAAAATAAGTGACTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
9361 10756 8.622572 AGTTCCAAATTAATATTTCCCCATGT 57.377 30.769 0.00 0.00 31.63 3.21
9363 10758 9.278011 TCAAGTTCCAAATTAATATTTCCCCAT 57.722 29.630 0.00 0.00 31.63 4.00
9420 10815 3.058520 CGCTTTCTTCAACAATGCGAATG 59.941 43.478 0.12 0.00 45.40 2.67
9523 10929 2.031163 ACTTGACTGAGCCGCACC 59.969 61.111 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.