Multiple sequence alignment - TraesCS3B01G312300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G312300 chr3B 100.000 5592 0 0 1 5592 501502467 501496876 0.000000e+00 10327.0
1 TraesCS3B01G312300 chr3B 96.104 77 3 0 3489 3565 501498903 501498979 5.880000e-25 126.0
2 TraesCS3B01G312300 chr3A 92.731 3522 126 49 1 3493 507641407 507637987 0.000000e+00 4966.0
3 TraesCS3B01G312300 chr3A 90.405 1803 87 32 3559 5283 507637987 507636193 0.000000e+00 2292.0
4 TraesCS3B01G312300 chr3A 87.582 153 17 2 5379 5531 507632830 507632680 5.760000e-40 176.0
5 TraesCS3B01G312300 chr3A 90.123 81 3 1 3487 3562 650424850 650424770 3.560000e-17 100.0
6 TraesCS3B01G312300 chr3D 95.871 1889 66 8 1417 3301 385474919 385473039 0.000000e+00 3046.0
7 TraesCS3B01G312300 chr3D 91.304 2093 87 40 3559 5592 385472953 385470897 0.000000e+00 2769.0
8 TraesCS3B01G312300 chr3D 91.208 1399 65 26 7 1384 385476627 385475266 0.000000e+00 1849.0
9 TraesCS3B01G312300 chr3D 100.000 54 0 0 3442 3495 385473001 385472948 3.560000e-17 100.0
10 TraesCS3B01G312300 chr7B 93.421 76 2 1 3492 3564 589938040 589938115 5.920000e-20 110.0
11 TraesCS3B01G312300 chr7A 94.366 71 4 0 3492 3562 576445303 576445233 5.920000e-20 110.0
12 TraesCS3B01G312300 chr7A 94.366 71 4 0 3492 3562 658646859 658646929 5.920000e-20 110.0
13 TraesCS3B01G312300 chr2B 92.208 77 3 2 3489 3562 159968519 159968443 7.660000e-19 106.0
14 TraesCS3B01G312300 chr2B 91.892 74 3 1 3492 3562 376149177 376149250 3.560000e-17 100.0
15 TraesCS3B01G312300 chr2B 98.214 56 1 0 3373 3428 551110989 551111044 1.280000e-16 99.0
16 TraesCS3B01G312300 chr4A 92.000 75 5 1 3488 3562 730883618 730883545 2.760000e-18 104.0
17 TraesCS3B01G312300 chr6B 91.026 78 3 2 3488 3562 22733666 22733742 9.910000e-18 102.0
18 TraesCS3B01G312300 chr5B 98.246 57 0 1 3373 3428 128350945 128351001 1.280000e-16 99.0
19 TraesCS3B01G312300 chr1D 98.214 56 1 0 3373 3428 260956102 260956047 1.280000e-16 99.0
20 TraesCS3B01G312300 chr1D 96.610 59 1 1 3370 3428 256553265 256553322 4.610000e-16 97.1
21 TraesCS3B01G312300 chr1B 98.214 56 1 0 3373 3428 560222250 560222195 1.280000e-16 99.0
22 TraesCS3B01G312300 chr1A 98.214 56 0 1 3373 3428 561089541 561089487 4.610000e-16 97.1
23 TraesCS3B01G312300 chr5D 96.552 58 0 2 3372 3428 81756286 81756342 1.660000e-15 95.3
24 TraesCS3B01G312300 chr7D 90.278 72 3 4 3358 3428 192076711 192076779 2.150000e-14 91.6
25 TraesCS3B01G312300 chr6D 100.000 30 0 0 5514 5543 324814031 324814002 7.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G312300 chr3B 501496876 501502467 5591 True 10327 10327 100.000000 1 5592 1 chr3B.!!$R1 5591
1 TraesCS3B01G312300 chr3A 507632680 507641407 8727 True 2478 4966 90.239333 1 5531 3 chr3A.!!$R2 5530
2 TraesCS3B01G312300 chr3D 385470897 385476627 5730 True 1941 3046 94.595750 7 5592 4 chr3D.!!$R1 5585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 987 0.691078 GTGGACCTGCAGATCCCCTA 60.691 60.0 25.13 2.57 33.69 3.53 F
2499 2875 0.815734 ATTGCTCATCTGTTGCCTGC 59.184 50.0 0.00 0.00 0.00 4.85 F
2905 3285 1.234821 TTGGACTTGCAAGGTTAGCG 58.765 50.0 29.18 4.70 33.85 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2905 3285 1.302511 ATGTGTGTTGGAGTCGGCC 60.303 57.895 0.0 0.0 0.00 6.13 R
3912 4296 0.392706 ACTCACCACAGCATGACGAA 59.607 50.000 0.0 0.0 39.69 3.85 R
4885 5328 0.543749 ATTGCCTAGACCCTGCTGAC 59.456 55.000 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 1.202359 GCGAGCCAGAAAAACAAACCA 60.202 47.619 0.00 0.00 0.00 3.67
133 145 3.892162 CCCGGTTTCCACCACCCA 61.892 66.667 0.00 0.00 44.53 4.51
135 147 2.975799 CGGTTTCCACCACCCACG 60.976 66.667 0.00 0.00 44.53 4.94
136 148 2.596338 GGTTTCCACCACCCACGG 60.596 66.667 0.00 0.00 43.61 4.94
137 149 2.193786 GTTTCCACCACCCACGGT 59.806 61.111 0.00 0.00 41.07 4.83
260 289 2.047844 CTGCCGCACTGTACTGCT 60.048 61.111 5.66 0.00 34.77 4.24
325 354 3.339093 CACCAACCCCCTCCCCTC 61.339 72.222 0.00 0.00 0.00 4.30
326 355 4.695791 ACCAACCCCCTCCCCTCC 62.696 72.222 0.00 0.00 0.00 4.30
400 435 5.515106 TGTTTTGAGAAAAGAAGGAAGGGA 58.485 37.500 0.00 0.00 0.00 4.20
411 446 4.711055 AGAAGGAAGGGAAAATAGAGGGA 58.289 43.478 0.00 0.00 0.00 4.20
413 448 4.369809 AGGAAGGGAAAATAGAGGGAGA 57.630 45.455 0.00 0.00 0.00 3.71
432 467 9.145442 GAGGGAGAAAATTATACTAGTACCACT 57.855 37.037 4.31 0.00 0.00 4.00
509 547 3.281787 AGGGACGGGAGGGAGGAA 61.282 66.667 0.00 0.00 0.00 3.36
622 666 2.215465 CTGCATTGCATTGGCCGACA 62.215 55.000 12.53 0.00 38.13 4.35
624 668 1.079875 GCATTGCATTGGCCGACAAG 61.080 55.000 10.41 0.00 43.48 3.16
722 771 2.433145 CCGTGCGTGATCTGCTGT 60.433 61.111 11.02 0.00 0.00 4.40
764 813 1.464376 GCGGGAGGATTCGGATCTCA 61.464 60.000 3.13 0.00 32.66 3.27
765 814 1.040646 CGGGAGGATTCGGATCTCAA 58.959 55.000 3.13 0.00 32.66 3.02
766 815 1.000283 CGGGAGGATTCGGATCTCAAG 60.000 57.143 3.13 0.00 32.66 3.02
767 816 1.270571 GGGAGGATTCGGATCTCAAGC 60.271 57.143 3.13 0.00 32.66 4.01
768 817 1.270571 GGAGGATTCGGATCTCAAGCC 60.271 57.143 3.13 3.95 32.66 4.35
809 858 2.368875 GTCGGGAGAGAGAGAGAGAGAT 59.631 54.545 0.00 0.00 41.26 2.75
812 861 3.617531 CGGGAGAGAGAGAGAGAGATAGC 60.618 56.522 0.00 0.00 0.00 2.97
926 987 0.691078 GTGGACCTGCAGATCCCCTA 60.691 60.000 25.13 2.57 33.69 3.53
971 1032 1.591703 CTTCGCTGCTGTGGAGGTA 59.408 57.895 4.57 0.00 0.00 3.08
975 1036 1.219393 GCTGCTGTGGAGGTACCTC 59.781 63.158 30.72 30.72 42.04 3.85
1266 1327 1.078214 TCCTCCAGCATTGCCTTCG 60.078 57.895 4.70 0.00 0.00 3.79
1434 1809 3.993584 GTGTACCCGTCACCGCCA 61.994 66.667 0.00 0.00 0.00 5.69
1518 1893 2.734723 CCATCGCCATCGCCTACG 60.735 66.667 0.00 0.00 42.01 3.51
1626 2001 3.221771 TCATACCAAGCCACATTATGCC 58.778 45.455 0.00 0.00 0.00 4.40
1782 2157 2.906691 CCACCATTTGGCTTGTCAAA 57.093 45.000 2.80 2.80 39.07 2.69
1823 2198 2.685017 TCCCTCAGCACTGCCGAT 60.685 61.111 0.00 0.00 0.00 4.18
1912 2287 6.818644 ACTAGCATCAGGTACTACAAAACATG 59.181 38.462 0.00 0.00 36.02 3.21
1919 2294 3.749609 GGTACTACAAAACATGAACGCCT 59.250 43.478 0.00 0.00 0.00 5.52
1930 2305 3.250040 ACATGAACGCCTGAGTGTTAAAC 59.750 43.478 0.00 0.00 46.55 2.01
2007 2383 2.307496 ATTTGTGTTGGCCAGATGGA 57.693 45.000 5.11 0.00 37.39 3.41
2271 2647 3.706373 GGGCAGGGAGAGCGTGAA 61.706 66.667 0.00 0.00 0.00 3.18
2441 2817 2.224066 CCCTGTCGATCATAGTGGTTCC 60.224 54.545 0.00 0.00 0.00 3.62
2479 2855 2.682155 AGCTTTAGTGAGGCAGCTAC 57.318 50.000 0.00 0.00 40.92 3.58
2499 2875 0.815734 ATTGCTCATCTGTTGCCTGC 59.184 50.000 0.00 0.00 0.00 4.85
2621 2997 8.500753 ACCTGCACGAAGATTGTAATATTTTA 57.499 30.769 0.00 0.00 0.00 1.52
2811 3189 4.218312 AGTTCCAGCTTCCAATTGTTTCT 58.782 39.130 4.43 0.00 0.00 2.52
2812 3190 5.385198 AGTTCCAGCTTCCAATTGTTTCTA 58.615 37.500 4.43 0.00 0.00 2.10
2813 3191 5.474876 AGTTCCAGCTTCCAATTGTTTCTAG 59.525 40.000 4.43 0.00 0.00 2.43
2818 3196 6.375455 CCAGCTTCCAATTGTTTCTAGTATGT 59.625 38.462 4.43 0.00 0.00 2.29
2881 3261 3.084786 CTCCAACAATCTCCAGGTTTCC 58.915 50.000 0.00 0.00 0.00 3.13
2905 3285 1.234821 TTGGACTTGCAAGGTTAGCG 58.765 50.000 29.18 4.70 33.85 4.26
2920 3300 4.980805 GCGGCCGACTCCAACACA 62.981 66.667 33.48 0.00 0.00 3.72
2990 3370 6.334989 CAAAGATAGCCATTGCAATCTTCAA 58.665 36.000 9.53 0.00 41.13 2.69
2992 3372 6.726490 AGATAGCCATTGCAATCTTCAATT 57.274 33.333 9.53 0.00 41.13 2.32
2994 3374 8.418597 AGATAGCCATTGCAATCTTCAATTAT 57.581 30.769 9.53 1.49 41.13 1.28
2995 3375 8.867097 AGATAGCCATTGCAATCTTCAATTATT 58.133 29.630 9.53 0.00 41.13 1.40
3427 3809 9.200817 CCTCATTCATTAATTAAGAGGGGAAAA 57.799 33.333 17.07 0.74 37.97 2.29
3444 3826 4.025229 GGGAAAATTTCGTTGAAGTTTGGC 60.025 41.667 0.00 0.00 33.12 4.52
3492 3874 6.381498 TTGGTTGATTTCCTGTCCATAGTA 57.619 37.500 0.00 0.00 0.00 1.82
3493 3875 5.741011 TGGTTGATTTCCTGTCCATAGTAC 58.259 41.667 0.00 0.00 0.00 2.73
3494 3876 5.487488 TGGTTGATTTCCTGTCCATAGTACT 59.513 40.000 0.00 0.00 0.00 2.73
3495 3877 6.049790 GGTTGATTTCCTGTCCATAGTACTC 58.950 44.000 0.00 0.00 0.00 2.59
3496 3878 5.871396 TGATTTCCTGTCCATAGTACTCC 57.129 43.478 0.00 0.00 0.00 3.85
3497 3879 4.654262 TGATTTCCTGTCCATAGTACTCCC 59.346 45.833 0.00 0.00 0.00 4.30
3498 3880 4.348020 TTTCCTGTCCATAGTACTCCCT 57.652 45.455 0.00 0.00 0.00 4.20
3499 3881 3.596940 TCCTGTCCATAGTACTCCCTC 57.403 52.381 0.00 0.00 0.00 4.30
3500 3882 3.132056 TCCTGTCCATAGTACTCCCTCT 58.868 50.000 0.00 0.00 0.00 3.69
3501 3883 3.117474 TCCTGTCCATAGTACTCCCTCTG 60.117 52.174 0.00 0.00 0.00 3.35
3502 3884 3.373220 CCTGTCCATAGTACTCCCTCTGT 60.373 52.174 0.00 0.00 0.00 3.41
3503 3885 4.282496 CTGTCCATAGTACTCCCTCTGTT 58.718 47.826 0.00 0.00 0.00 3.16
3504 3886 4.279145 TGTCCATAGTACTCCCTCTGTTC 58.721 47.826 0.00 0.00 0.00 3.18
3505 3887 3.637694 GTCCATAGTACTCCCTCTGTTCC 59.362 52.174 0.00 0.00 0.00 3.62
3506 3888 3.271225 TCCATAGTACTCCCTCTGTTCCA 59.729 47.826 0.00 0.00 0.00 3.53
3507 3889 4.030913 CCATAGTACTCCCTCTGTTCCAA 58.969 47.826 0.00 0.00 0.00 3.53
3508 3890 4.469945 CCATAGTACTCCCTCTGTTCCAAA 59.530 45.833 0.00 0.00 0.00 3.28
3509 3891 5.045869 CCATAGTACTCCCTCTGTTCCAAAA 60.046 44.000 0.00 0.00 0.00 2.44
3510 3892 6.353082 CCATAGTACTCCCTCTGTTCCAAAAT 60.353 42.308 0.00 0.00 0.00 1.82
3511 3893 7.147549 CCATAGTACTCCCTCTGTTCCAAAATA 60.148 40.741 0.00 0.00 0.00 1.40
3512 3894 6.301169 AGTACTCCCTCTGTTCCAAAATAG 57.699 41.667 0.00 0.00 0.00 1.73
3513 3895 6.023603 AGTACTCCCTCTGTTCCAAAATAGA 58.976 40.000 0.00 0.00 32.42 1.98
3514 3896 6.674419 AGTACTCCCTCTGTTCCAAAATAGAT 59.326 38.462 0.00 0.00 32.88 1.98
3515 3897 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
3516 3898 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
3517 3899 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
3518 3900 5.488919 TCCCTCTGTTCCAAAATAGATGACT 59.511 40.000 0.00 0.00 32.88 3.41
3519 3901 5.819901 CCCTCTGTTCCAAAATAGATGACTC 59.180 44.000 0.00 0.00 32.88 3.36
3520 3902 6.409704 CCTCTGTTCCAAAATAGATGACTCA 58.590 40.000 0.00 0.00 32.88 3.41
3521 3903 6.881065 CCTCTGTTCCAAAATAGATGACTCAA 59.119 38.462 0.00 0.00 32.88 3.02
3522 3904 7.148340 CCTCTGTTCCAAAATAGATGACTCAAC 60.148 40.741 0.00 0.00 32.88 3.18
3523 3905 7.453393 TCTGTTCCAAAATAGATGACTCAACT 58.547 34.615 0.00 0.00 28.72 3.16
3524 3906 7.939039 TCTGTTCCAAAATAGATGACTCAACTT 59.061 33.333 0.00 0.00 28.72 2.66
3525 3907 9.219603 CTGTTCCAAAATAGATGACTCAACTTA 57.780 33.333 0.00 0.00 0.00 2.24
3526 3908 8.999431 TGTTCCAAAATAGATGACTCAACTTAC 58.001 33.333 0.00 0.00 0.00 2.34
3527 3909 8.999431 GTTCCAAAATAGATGACTCAACTTACA 58.001 33.333 0.00 0.00 0.00 2.41
3528 3910 9.567776 TTCCAAAATAGATGACTCAACTTACAA 57.432 29.630 0.00 0.00 0.00 2.41
3529 3911 9.567776 TCCAAAATAGATGACTCAACTTACAAA 57.432 29.630 0.00 0.00 0.00 2.83
3530 3912 9.831737 CCAAAATAGATGACTCAACTTACAAAG 57.168 33.333 0.00 0.00 0.00 2.77
3548 3930 9.831737 CTTACAAAGTTGAGTCATCTATTTTGG 57.168 33.333 14.35 0.00 40.00 3.28
3549 3931 9.567776 TTACAAAGTTGAGTCATCTATTTTGGA 57.432 29.630 14.35 6.88 40.00 3.53
3550 3932 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
3551 3933 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
3552 3934 8.352201 CAAAGTTGAGTCATCTATTTTGGAACA 58.648 33.333 4.14 0.00 35.65 3.18
3553 3935 7.678947 AGTTGAGTCATCTATTTTGGAACAG 57.321 36.000 1.70 0.00 42.39 3.16
3554 3936 7.453393 AGTTGAGTCATCTATTTTGGAACAGA 58.547 34.615 1.70 0.00 42.39 3.41
3555 3937 7.605691 AGTTGAGTCATCTATTTTGGAACAGAG 59.394 37.037 1.70 0.00 42.39 3.35
3556 3938 6.409704 TGAGTCATCTATTTTGGAACAGAGG 58.590 40.000 0.00 0.00 42.39 3.69
3557 3939 5.749462 AGTCATCTATTTTGGAACAGAGGG 58.251 41.667 0.00 0.00 42.39 4.30
3730 4114 1.457346 GTGGCTGATGCTAGCTGTTT 58.543 50.000 17.23 0.00 43.22 2.83
3873 4257 4.526970 GGCAACCTGATTATTCTTCCAGA 58.473 43.478 0.00 0.00 0.00 3.86
3915 4299 8.341903 TGGATACAGTGTTATTTAATGCATTCG 58.658 33.333 16.86 0.00 46.17 3.34
3945 4329 3.188048 GTGGTGAGTCATGAAAGAAGCTG 59.812 47.826 0.00 0.00 0.00 4.24
3946 4330 2.746362 GGTGAGTCATGAAAGAAGCTGG 59.254 50.000 0.00 0.00 0.00 4.85
3947 4331 3.557898 GGTGAGTCATGAAAGAAGCTGGA 60.558 47.826 0.00 0.00 0.00 3.86
3948 4332 3.683822 GTGAGTCATGAAAGAAGCTGGAG 59.316 47.826 0.00 0.00 0.00 3.86
3949 4333 3.326006 TGAGTCATGAAAGAAGCTGGAGT 59.674 43.478 0.00 0.00 0.00 3.85
3988 4372 5.703730 AAACAGGGACCGATTATCCTAAA 57.296 39.130 0.00 0.00 36.40 1.85
4026 4414 6.704493 GCATAAATGGAACTGATGAATGCATT 59.296 34.615 12.83 12.83 36.80 3.56
4056 4444 4.910195 TGACACCTCATTGCTCTAAATGT 58.090 39.130 0.00 0.00 38.46 2.71
4113 4528 7.148086 TGGATGCATAATGTAAACTCAAACTCC 60.148 37.037 0.00 0.00 0.00 3.85
4161 4577 1.815003 CCCTTTCTCTCGCAAGCAATT 59.185 47.619 0.00 0.00 37.18 2.32
4179 4595 3.616956 ATTGAGCATCGAGACTTTGGA 57.383 42.857 0.00 0.00 38.61 3.53
4188 4604 1.896465 CGAGACTTTGGAGACCTTCCT 59.104 52.381 0.00 0.00 46.92 3.36
4197 4613 1.410365 GGAGACCTTCCTGATCCGAGA 60.410 57.143 0.00 0.00 43.16 4.04
4316 4732 6.017687 GGGCAGGTACTAAATAATAAACCACG 60.018 42.308 0.00 0.00 36.02 4.94
4339 4755 8.013378 CACGTTTCATTAATTTTACCTCGTTCT 58.987 33.333 0.00 0.00 0.00 3.01
4349 4765 8.970691 AATTTTACCTCGTTCTTGAATGAATG 57.029 30.769 6.71 4.26 35.06 2.67
4378 4795 7.725818 AATGACAGCACATGACTAAGATATG 57.274 36.000 0.00 0.00 0.00 1.78
4379 4796 5.052481 TGACAGCACATGACTAAGATATGC 58.948 41.667 0.00 0.00 0.00 3.14
4380 4797 4.384056 ACAGCACATGACTAAGATATGCC 58.616 43.478 0.00 0.00 31.94 4.40
4382 4799 3.392285 AGCACATGACTAAGATATGCCCA 59.608 43.478 0.00 0.00 31.94 5.36
4384 4801 3.742882 CACATGACTAAGATATGCCCACG 59.257 47.826 0.00 0.00 0.00 4.94
4386 4803 4.587262 ACATGACTAAGATATGCCCACGTA 59.413 41.667 0.00 0.00 0.00 3.57
4391 4809 6.704493 TGACTAAGATATGCCCACGTATTTTC 59.296 38.462 0.00 0.00 0.00 2.29
4398 4816 1.544246 GCCCACGTATTTTCCTTTGCT 59.456 47.619 0.00 0.00 0.00 3.91
4411 4832 2.912956 TCCTTTGCTATCTCAGGTGGTT 59.087 45.455 0.00 0.00 0.00 3.67
4414 4835 4.446371 CTTTGCTATCTCAGGTGGTTAGG 58.554 47.826 0.00 0.00 0.00 2.69
4781 5219 7.483307 TCTTTTCTGTTCTTGGTCAAATGAAG 58.517 34.615 0.00 0.00 0.00 3.02
4784 5222 6.624352 TCTGTTCTTGGTCAAATGAAGAAG 57.376 37.500 0.00 0.00 36.60 2.85
4831 5270 5.134339 TCCAGGCATTCCCAGATAAAGTAAT 59.866 40.000 0.00 0.00 35.39 1.89
4837 5276 7.196331 GCATTCCCAGATAAAGTAATTGTGTC 58.804 38.462 0.00 0.00 0.00 3.67
4903 5346 1.888436 CGTCAGCAGGGTCTAGGCAA 61.888 60.000 0.00 0.00 0.00 4.52
4941 5390 2.463752 TGACTCGGGCCTTGTATTAGT 58.536 47.619 0.84 0.00 0.00 2.24
5006 5456 2.470821 GACGTAATCCCGTGGATCTTG 58.529 52.381 5.97 2.61 42.27 3.02
5018 5468 3.002042 CGTGGATCTTGTGCTCAATCATC 59.998 47.826 0.99 6.81 32.82 2.92
5019 5469 4.197750 GTGGATCTTGTGCTCAATCATCT 58.802 43.478 15.09 0.00 32.82 2.90
5042 5496 2.417515 GCACCCTCCGTTTTGTCAAAAA 60.418 45.455 12.26 0.00 32.82 1.94
5053 5507 0.395862 TGTCAAAAAGCCGGTGGGAA 60.396 50.000 1.90 0.00 34.06 3.97
5055 5509 0.825840 TCAAAAAGCCGGTGGGAAGG 60.826 55.000 1.90 0.00 34.06 3.46
5165 5625 0.685660 GGGTCTCGTTTCCCTGTCTT 59.314 55.000 0.00 0.00 40.48 3.01
5195 5655 4.053295 CGTCGGTCGATAATTAAATGGGT 58.947 43.478 0.00 0.00 42.86 4.51
5283 8852 7.277098 GTCGCACCAAGAAGAAATAATACTACA 59.723 37.037 0.00 0.00 0.00 2.74
5284 8853 7.985184 TCGCACCAAGAAGAAATAATACTACAT 59.015 33.333 0.00 0.00 0.00 2.29
5291 8860 7.497595 AGAAGAAATAATACTACATGCACGGA 58.502 34.615 0.00 0.00 0.00 4.69
5292 8861 8.150945 AGAAGAAATAATACTACATGCACGGAT 58.849 33.333 0.00 0.00 0.00 4.18
5293 8862 9.419297 GAAGAAATAATACTACATGCACGGATA 57.581 33.333 0.00 0.00 0.00 2.59
5294 8863 9.944376 AAGAAATAATACTACATGCACGGATAT 57.056 29.630 0.00 0.00 0.00 1.63
5342 8930 0.818040 GGACTGTCGGTTGCCAACTT 60.818 55.000 7.62 0.00 0.00 2.66
5352 8940 1.818959 TTGCCAACTTGCCATGCCTC 61.819 55.000 0.00 0.00 0.00 4.70
5356 8944 0.034186 CAACTTGCCATGCCTCCCTA 60.034 55.000 0.00 0.00 0.00 3.53
5359 8947 0.179034 CTTGCCATGCCTCCCTACTC 60.179 60.000 0.00 0.00 0.00 2.59
5361 8949 2.823758 GCCATGCCTCCCTACTCCC 61.824 68.421 0.00 0.00 0.00 4.30
5362 8950 2.511452 CCATGCCTCCCTACTCCCG 61.511 68.421 0.00 0.00 0.00 5.14
5365 8953 1.049289 ATGCCTCCCTACTCCCGTTC 61.049 60.000 0.00 0.00 0.00 3.95
5366 8954 1.381463 GCCTCCCTACTCCCGTTCT 60.381 63.158 0.00 0.00 0.00 3.01
5367 8955 0.976590 GCCTCCCTACTCCCGTTCTT 60.977 60.000 0.00 0.00 0.00 2.52
5368 8956 1.569653 CCTCCCTACTCCCGTTCTTT 58.430 55.000 0.00 0.00 0.00 2.52
5369 8957 2.743553 CCTCCCTACTCCCGTTCTTTA 58.256 52.381 0.00 0.00 0.00 1.85
5370 8958 3.306613 CCTCCCTACTCCCGTTCTTTAT 58.693 50.000 0.00 0.00 0.00 1.40
5371 8959 3.710165 CCTCCCTACTCCCGTTCTTTATT 59.290 47.826 0.00 0.00 0.00 1.40
5377 9108 7.180766 TCCCTACTCCCGTTCTTTATTTTTCTA 59.819 37.037 0.00 0.00 0.00 2.10
5458 9189 1.340017 TGAAGCCCAGCAAGGATGTAC 60.340 52.381 0.00 0.00 41.22 2.90
5474 9205 4.381079 GGATGTACGTCTTCTGAAGCTTCT 60.381 45.833 26.09 6.90 0.00 2.85
5507 9241 4.904251 TGAGAATGAGAAGGCTAAGGCTAT 59.096 41.667 0.00 0.00 37.50 2.97
5539 9273 6.777213 ACGAAATCACTAGTTGAGGAGTAT 57.223 37.500 0.00 0.00 37.77 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.000325 AGGCAAGTTGTGGTTTGTTTTTC 59.000 39.130 4.48 0.00 0.00 2.29
33 35 0.878961 GGAACGACGAGGCAAGTTGT 60.879 55.000 0.00 0.21 37.80 3.32
107 119 0.551879 TGGAAACCGGGAAGAAACCA 59.448 50.000 6.32 2.44 0.00 3.67
133 145 2.283966 CTCCCCTCACCTCACCGT 60.284 66.667 0.00 0.00 0.00 4.83
135 147 2.689034 CCCTCCCCTCACCTCACC 60.689 72.222 0.00 0.00 0.00 4.02
136 148 2.689034 CCCCTCCCCTCACCTCAC 60.689 72.222 0.00 0.00 0.00 3.51
137 149 4.741239 GCCCCTCCCCTCACCTCA 62.741 72.222 0.00 0.00 0.00 3.86
169 193 2.787249 CAGATTGTCGCTTGCGGG 59.213 61.111 15.10 0.00 0.00 6.13
432 467 5.112129 TGGACAGTAGAGCATCACTAGTA 57.888 43.478 0.00 0.00 37.82 1.82
491 526 3.618855 TTCCTCCCTCCCGTCCCTG 62.619 68.421 0.00 0.00 0.00 4.45
492 527 3.281787 TTCCTCCCTCCCGTCCCT 61.282 66.667 0.00 0.00 0.00 4.20
493 528 3.082055 GTTCCTCCCTCCCGTCCC 61.082 72.222 0.00 0.00 0.00 4.46
494 529 3.082055 GGTTCCTCCCTCCCGTCC 61.082 72.222 0.00 0.00 0.00 4.79
509 547 1.480137 CCGAGCTCATCTCTTTCTGGT 59.520 52.381 15.40 0.00 39.70 4.00
563 601 2.826287 CCGCTCGCCTCTCTCTCA 60.826 66.667 0.00 0.00 0.00 3.27
685 729 2.268920 GAGAATCCAGCGGCCACA 59.731 61.111 2.24 0.00 0.00 4.17
687 731 2.586245 CAGAGAATCCAGCGGCCA 59.414 61.111 2.24 0.00 33.66 5.36
764 813 2.802106 GTAGAGAGAGCGCGGCTT 59.198 61.111 8.83 0.00 39.88 4.35
765 814 3.578272 CGTAGAGAGAGCGCGGCT 61.578 66.667 8.83 5.31 43.88 5.52
766 815 3.793603 GACGTAGAGAGAGCGCGGC 62.794 68.421 8.83 0.00 0.00 6.53
767 816 2.325166 GACGTAGAGAGAGCGCGG 59.675 66.667 8.83 0.00 0.00 6.46
768 817 2.053811 CGACGTAGAGAGAGCGCG 60.054 66.667 0.00 0.00 0.00 6.86
769 818 2.351435 GCGACGTAGAGAGAGCGC 60.351 66.667 0.00 0.00 37.60 5.92
770 819 1.011684 CAGCGACGTAGAGAGAGCG 60.012 63.158 0.00 0.00 0.00 5.03
771 820 0.027063 GACAGCGACGTAGAGAGAGC 59.973 60.000 0.00 0.00 0.00 4.09
772 821 0.299300 CGACAGCGACGTAGAGAGAG 59.701 60.000 0.00 0.00 40.82 3.20
773 822 1.082679 CCGACAGCGACGTAGAGAGA 61.083 60.000 0.00 0.00 40.82 3.10
809 858 4.675303 ACCCACCCTGGCCTGCTA 62.675 66.667 3.32 0.00 35.79 3.49
954 1015 1.292223 GTACCTCCACAGCAGCGAA 59.708 57.895 0.00 0.00 0.00 4.70
1041 1102 2.929598 GCGTACGACGACGACGAC 60.930 66.667 25.15 16.54 46.05 4.34
1234 1295 2.524394 AGGAGGTGACGGCAGTGT 60.524 61.111 0.00 0.00 0.00 3.55
1237 1298 2.997315 TGGAGGAGGTGACGGCAG 60.997 66.667 0.00 0.00 0.00 4.85
1392 1453 3.567478 CTGTACGCGTGGCTGGTCA 62.567 63.158 24.59 8.31 0.00 4.02
1553 1928 4.315941 GCGGGGGAGGCGAATAGG 62.316 72.222 0.00 0.00 0.00 2.57
1602 1977 4.801891 CATAATGTGGCTTGGTATGATGC 58.198 43.478 0.00 0.00 0.00 3.91
1912 2287 1.862827 ACGTTTAACACTCAGGCGTTC 59.137 47.619 0.00 0.00 0.00 3.95
1966 2342 6.885952 ATACTGTAATGAGCATCGTCTAGT 57.114 37.500 0.00 0.00 38.61 2.57
2007 2383 2.035576 GCCCGGTGATCGTAAGTAGAAT 59.964 50.000 0.00 0.00 37.11 2.40
2271 2647 2.505819 AGTATCAACTTCGGCCCTGAAT 59.494 45.455 0.00 0.00 29.00 2.57
2479 2855 1.469251 GCAGGCAACAGATGAGCAATG 60.469 52.381 0.00 0.00 41.41 2.82
2621 2997 9.566432 GGATTAATGAGGAGACAATTTAGTCAT 57.434 33.333 0.00 0.00 40.98 3.06
2849 3227 6.214615 TGGAGATTGTTGGAGGTACATAGAAA 59.785 38.462 0.00 0.00 0.00 2.52
2850 3228 5.724370 TGGAGATTGTTGGAGGTACATAGAA 59.276 40.000 0.00 0.00 0.00 2.10
2881 3261 3.369546 AACCTTGCAAGTCCAAAATCG 57.630 42.857 24.35 8.66 0.00 3.34
2905 3285 1.302511 ATGTGTGTTGGAGTCGGCC 60.303 57.895 0.00 0.00 0.00 6.13
3003 3383 9.567776 ACTATCTATAGATCACAGATTATCGGG 57.432 37.037 18.59 0.00 36.05 5.14
3151 3532 5.773575 GAAGAATCAACAGGTTTTCTTCCC 58.226 41.667 19.32 5.70 44.07 3.97
3380 3762 2.362077 GCAAGTCTTTTGCCTCCTTTCA 59.638 45.455 0.54 0.00 39.38 2.69
3427 3809 5.705609 ACATAGCCAAACTTCAACGAAAT 57.294 34.783 0.00 0.00 0.00 2.17
3431 3813 5.607119 AGTAACATAGCCAAACTTCAACG 57.393 39.130 0.00 0.00 0.00 4.10
3492 3874 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
3493 3875 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
3494 3876 5.488919 AGTCATCTATTTTGGAACAGAGGGA 59.511 40.000 0.00 0.00 42.39 4.20
3495 3877 5.749462 AGTCATCTATTTTGGAACAGAGGG 58.251 41.667 0.00 0.00 42.39 4.30
3496 3878 6.409704 TGAGTCATCTATTTTGGAACAGAGG 58.590 40.000 0.00 0.00 42.39 3.69
3497 3879 7.605691 AGTTGAGTCATCTATTTTGGAACAGAG 59.394 37.037 1.70 0.00 42.39 3.35
3498 3880 7.453393 AGTTGAGTCATCTATTTTGGAACAGA 58.547 34.615 1.70 0.00 42.39 3.41
3499 3881 7.678947 AGTTGAGTCATCTATTTTGGAACAG 57.321 36.000 1.70 0.00 42.39 3.16
3500 3882 8.999431 GTAAGTTGAGTCATCTATTTTGGAACA 58.001 33.333 4.14 0.00 0.00 3.18
3501 3883 8.999431 TGTAAGTTGAGTCATCTATTTTGGAAC 58.001 33.333 4.14 0.00 0.00 3.62
3502 3884 9.567776 TTGTAAGTTGAGTCATCTATTTTGGAA 57.432 29.630 4.14 0.00 0.00 3.53
3503 3885 9.567776 TTTGTAAGTTGAGTCATCTATTTTGGA 57.432 29.630 4.14 0.00 0.00 3.53
3504 3886 9.831737 CTTTGTAAGTTGAGTCATCTATTTTGG 57.168 33.333 4.14 0.00 0.00 3.28
3522 3904 9.831737 CCAAAATAGATGACTCAACTTTGTAAG 57.168 33.333 0.00 0.00 0.00 2.34
3523 3905 9.567776 TCCAAAATAGATGACTCAACTTTGTAA 57.432 29.630 0.00 0.00 0.00 2.41
3524 3906 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3525 3907 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3526 3908 8.352201 TGTTCCAAAATAGATGACTCAACTTTG 58.648 33.333 0.00 0.00 0.00 2.77
3527 3909 8.463930 TGTTCCAAAATAGATGACTCAACTTT 57.536 30.769 0.00 0.00 0.00 2.66
3528 3910 7.939039 TCTGTTCCAAAATAGATGACTCAACTT 59.061 33.333 0.00 0.00 28.72 2.66
3529 3911 7.453393 TCTGTTCCAAAATAGATGACTCAACT 58.547 34.615 0.00 0.00 28.72 3.16
3530 3912 7.148340 CCTCTGTTCCAAAATAGATGACTCAAC 60.148 40.741 0.00 0.00 32.88 3.18
3531 3913 6.881065 CCTCTGTTCCAAAATAGATGACTCAA 59.119 38.462 0.00 0.00 32.88 3.02
3532 3914 6.409704 CCTCTGTTCCAAAATAGATGACTCA 58.590 40.000 0.00 0.00 32.88 3.41
3533 3915 5.819901 CCCTCTGTTCCAAAATAGATGACTC 59.180 44.000 0.00 0.00 32.88 3.36
3534 3916 5.488919 TCCCTCTGTTCCAAAATAGATGACT 59.511 40.000 0.00 0.00 32.88 3.41
3535 3917 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
3536 3918 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
3537 3919 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
3538 3920 6.674419 AGTACTCCCTCTGTTCCAAAATAGAT 59.326 38.462 0.00 0.00 32.88 1.98
3539 3921 6.023603 AGTACTCCCTCTGTTCCAAAATAGA 58.976 40.000 0.00 0.00 32.42 1.98
3540 3922 6.301169 AGTACTCCCTCTGTTCCAAAATAG 57.699 41.667 0.00 0.00 0.00 1.73
3541 3923 7.186972 TCTAGTACTCCCTCTGTTCCAAAATA 58.813 38.462 0.00 0.00 0.00 1.40
3542 3924 6.023603 TCTAGTACTCCCTCTGTTCCAAAAT 58.976 40.000 0.00 0.00 0.00 1.82
3543 3925 5.399991 TCTAGTACTCCCTCTGTTCCAAAA 58.600 41.667 0.00 0.00 0.00 2.44
3544 3926 5.006896 TCTAGTACTCCCTCTGTTCCAAA 57.993 43.478 0.00 0.00 0.00 3.28
3545 3927 4.669866 TCTAGTACTCCCTCTGTTCCAA 57.330 45.455 0.00 0.00 0.00 3.53
3546 3928 4.883021 ATCTAGTACTCCCTCTGTTCCA 57.117 45.455 0.00 0.00 0.00 3.53
3547 3929 7.288158 ACAATTATCTAGTACTCCCTCTGTTCC 59.712 40.741 0.00 0.00 0.00 3.62
3548 3930 8.240267 ACAATTATCTAGTACTCCCTCTGTTC 57.760 38.462 0.00 0.00 0.00 3.18
3549 3931 8.478877 CAACAATTATCTAGTACTCCCTCTGTT 58.521 37.037 0.00 0.00 0.00 3.16
3550 3932 7.620094 ACAACAATTATCTAGTACTCCCTCTGT 59.380 37.037 0.00 0.00 0.00 3.41
3551 3933 8.012957 ACAACAATTATCTAGTACTCCCTCTG 57.987 38.462 0.00 0.00 0.00 3.35
3552 3934 8.478877 CAACAACAATTATCTAGTACTCCCTCT 58.521 37.037 0.00 0.00 0.00 3.69
3553 3935 8.475639 TCAACAACAATTATCTAGTACTCCCTC 58.524 37.037 0.00 0.00 0.00 4.30
3554 3936 8.375493 TCAACAACAATTATCTAGTACTCCCT 57.625 34.615 0.00 0.00 0.00 4.20
3555 3937 9.262358 GATCAACAACAATTATCTAGTACTCCC 57.738 37.037 0.00 0.00 0.00 4.30
3556 3938 9.817809 TGATCAACAACAATTATCTAGTACTCC 57.182 33.333 0.00 0.00 0.00 3.85
3730 4114 3.270960 AGTGGAAGGGGCCAACATAATAA 59.729 43.478 4.39 0.00 40.20 1.40
3873 4257 1.893808 CCACTTTCTGCGTGCCACT 60.894 57.895 0.00 0.00 0.00 4.00
3912 4296 0.392706 ACTCACCACAGCATGACGAA 59.607 50.000 0.00 0.00 39.69 3.85
3915 4299 1.736126 CATGACTCACCACAGCATGAC 59.264 52.381 0.00 0.00 39.69 3.06
3945 4329 7.155328 TGTTTTCTCAAGTTCTCATCTACTCC 58.845 38.462 0.00 0.00 0.00 3.85
3946 4330 7.330700 CCTGTTTTCTCAAGTTCTCATCTACTC 59.669 40.741 0.00 0.00 0.00 2.59
3947 4331 7.158021 CCTGTTTTCTCAAGTTCTCATCTACT 58.842 38.462 0.00 0.00 0.00 2.57
3948 4332 6.370166 CCCTGTTTTCTCAAGTTCTCATCTAC 59.630 42.308 0.00 0.00 0.00 2.59
3949 4333 6.270000 TCCCTGTTTTCTCAAGTTCTCATCTA 59.730 38.462 0.00 0.00 0.00 1.98
3988 4372 8.917088 AGTTCCATTTATGCTTATGTTTGCTAT 58.083 29.630 0.00 0.00 0.00 2.97
4026 4414 3.261643 AGCAATGAGGTGTCATCTGTGTA 59.738 43.478 0.00 0.00 43.04 2.90
4079 4494 9.797642 AGTTTACATTATGCATCCATCTATCAA 57.202 29.630 0.19 0.00 32.85 2.57
4161 4577 2.094494 GTCTCCAAAGTCTCGATGCTCA 60.094 50.000 0.00 0.00 0.00 4.26
4179 4595 2.534042 TTCTCGGATCAGGAAGGTCT 57.466 50.000 0.00 0.00 0.00 3.85
4188 4604 4.651778 ACTTGTTTTCCATTCTCGGATCA 58.348 39.130 0.00 0.00 34.19 2.92
4197 4613 9.447157 TCATTTTCTTCAAACTTGTTTTCCATT 57.553 25.926 0.00 0.00 0.00 3.16
4316 4732 9.887406 TCAAGAACGAGGTAAAATTAATGAAAC 57.113 29.630 0.00 0.00 0.00 2.78
4324 4740 8.792633 TCATTCATTCAAGAACGAGGTAAAATT 58.207 29.630 0.00 0.00 0.00 1.82
4366 4783 5.801531 AATACGTGGGCATATCTTAGTCA 57.198 39.130 0.00 0.00 0.00 3.41
4378 4795 1.544246 AGCAAAGGAAAATACGTGGGC 59.456 47.619 0.00 0.00 0.00 5.36
4379 4796 4.881850 AGATAGCAAAGGAAAATACGTGGG 59.118 41.667 0.00 0.00 0.00 4.61
4380 4797 5.584649 TGAGATAGCAAAGGAAAATACGTGG 59.415 40.000 0.00 0.00 0.00 4.94
4382 4799 5.817816 CCTGAGATAGCAAAGGAAAATACGT 59.182 40.000 0.00 0.00 30.92 3.57
4384 4801 6.038714 CCACCTGAGATAGCAAAGGAAAATAC 59.961 42.308 6.03 0.00 33.78 1.89
4386 4803 4.952335 CCACCTGAGATAGCAAAGGAAAAT 59.048 41.667 6.03 0.00 33.78 1.82
4391 4809 3.356529 AACCACCTGAGATAGCAAAGG 57.643 47.619 0.00 0.00 35.82 3.11
4398 4816 2.116238 GTGCCCTAACCACCTGAGATA 58.884 52.381 0.00 0.00 0.00 1.98
4411 4832 2.704065 GGCTAAACTATCCAGTGCCCTA 59.296 50.000 0.00 0.00 36.04 3.53
4414 4835 1.138266 TCGGCTAAACTATCCAGTGCC 59.862 52.381 0.00 0.00 37.79 5.01
4679 5109 2.266279 AGGATTTTCGTCAGGGGAGAA 58.734 47.619 0.00 0.00 0.00 2.87
4680 5110 1.952621 AGGATTTTCGTCAGGGGAGA 58.047 50.000 0.00 0.00 0.00 3.71
4885 5328 0.543749 ATTGCCTAGACCCTGCTGAC 59.456 55.000 0.00 0.00 0.00 3.51
4903 5346 2.688958 GTCAACCACCGAGCTCTACTAT 59.311 50.000 12.85 0.00 0.00 2.12
5018 5468 1.566018 GACAAAACGGAGGGTGCGAG 61.566 60.000 0.00 0.00 34.49 5.03
5019 5469 1.595929 GACAAAACGGAGGGTGCGA 60.596 57.895 0.00 0.00 34.49 5.10
5053 5507 2.750350 CAACGGGACAAGGAGCCT 59.250 61.111 0.00 0.00 0.00 4.58
5055 5509 3.056328 GGCAACGGGACAAGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
5195 5655 1.683629 GGCACCCCGTCCAAATTATCA 60.684 52.381 0.00 0.00 0.00 2.15
5342 8930 2.072487 GGAGTAGGGAGGCATGGCA 61.072 63.158 22.64 0.00 0.00 4.92
5352 8940 6.178324 AGAAAAATAAAGAACGGGAGTAGGG 58.822 40.000 0.00 0.00 46.69 3.53
5359 8947 9.000486 AGAAGAAGTAGAAAAATAAAGAACGGG 58.000 33.333 0.00 0.00 0.00 5.28
5370 8958 9.408648 AGAACAAATGGAGAAGAAGTAGAAAAA 57.591 29.630 0.00 0.00 0.00 1.94
5371 8959 8.980481 AGAACAAATGGAGAAGAAGTAGAAAA 57.020 30.769 0.00 0.00 0.00 2.29
5377 9108 6.360618 ACAGAAGAACAAATGGAGAAGAAGT 58.639 36.000 0.00 0.00 0.00 3.01
5482 9216 4.018960 AGCCTTAGCCTTCTCATTCTCAAA 60.019 41.667 0.00 0.00 41.25 2.69
5485 9219 3.836365 AGCCTTAGCCTTCTCATTCTC 57.164 47.619 0.00 0.00 41.25 2.87
5486 9220 4.657969 ACATAGCCTTAGCCTTCTCATTCT 59.342 41.667 0.00 0.00 41.25 2.40
5487 9221 4.967036 ACATAGCCTTAGCCTTCTCATTC 58.033 43.478 0.00 0.00 41.25 2.67
5488 9222 6.694445 ATACATAGCCTTAGCCTTCTCATT 57.306 37.500 0.00 0.00 41.25 2.57
5489 9223 6.694445 AATACATAGCCTTAGCCTTCTCAT 57.306 37.500 0.00 0.00 41.25 2.90
5539 9273 3.101437 TCACCTAATGCTAAGAACCGGA 58.899 45.455 9.46 0.00 0.00 5.14
5543 9277 5.120830 CCGCATATCACCTAATGCTAAGAAC 59.879 44.000 5.83 0.00 45.03 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.