AutoCloner

Multiple sequence alignment - TraesCS3B01G312200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G312200	chr3B	100.000	6191	0	0	1	6191	501416876	501423066	0.000000e+00	11433.0
1	TraesCS3B01G312200	chr3B	86.890	717	61	10	2237	2925	13265678	13266389	0.000000e+00	773.0
2	TraesCS3B01G312200	chr3B	86.331	556	69	4	1683	2232	674680059	674679505	3.190000e-167	599.0
3	TraesCS3B01G312200	chr3A	87.291	1975	129	30	3386	5294	507595633	507597551	0.000000e+00	2145.0
4	TraesCS3B01G312200	chr3A	92.761	1188	58	13	471	1642	507594382	507595557	0.000000e+00	1692.0
5	TraesCS3B01G312200	chr3A	87.302	567	64	7	1676	2236	27720787	27721351	5.230000e-180	641.0
6	TraesCS3B01G312200	chr3A	88.246	536	46	13	2376	2902	467158436	467158963	5.270000e-175	625.0
7	TraesCS3B01G312200	chr3A	84.498	658	73	19	5324	5976	507621331	507621964	1.900000e-174	623.0
8	TraesCS3B01G312200	chr3A	91.549	284	19	5	2930	3211	444288260	444288540	2.710000e-103	387.0
9	TraesCS3B01G312200	chr3A	92.672	232	15	2	5961	6191	507630933	507631163	3.580000e-87	333.0
10	TraesCS3B01G312200	chr3D	90.781	1345	77	18	78	1401	385432868	385434186	0.000000e+00	1753.0
11	TraesCS3B01G312200	chr3D	87.001	877	81	20	5324	6191	385468972	385469824	0.000000e+00	957.0
12	TraesCS3B01G312200	chr3D	87.805	697	40	17	4618	5295	385468107	385468777	0.000000e+00	774.0
13	TraesCS3B01G312200	chr3D	90.229	481	42	4	1759	2236	26032407	26032885	1.900000e-174	623.0
14	TraesCS3B01G312200	chr3D	92.781	374	16	2	3669	4042	385438156	385438518	1.180000e-146	531.0
15	TraesCS3B01G312200	chr3D	83.333	552	85	5	1689	2235	301732787	301733336	2.580000e-138	503.0
16	TraesCS3B01G312200	chr3D	96.512	258	8	1	1394	1650	385435043	385435300	5.740000e-115	425.0
17	TraesCS3B01G312200	chr3D	97.126	174	5	0	4056	4229	385467090	385467263	1.690000e-75	294.0
18	TraesCS3B01G312200	chr3D	94.536	183	6	1	3491	3673	385437703	385437881	4.730000e-71	279.0
19	TraesCS3B01G312200	chr3D	93.478	184	10	1	4415	4596	385467927	385468110	7.910000e-69	272.0
20	TraesCS3B01G312200	chr3D	80.970	268	34	12	88	340	554163663	554163928	4.900000e-46	196.0
21	TraesCS3B01G312200	chr3D	80.682	264	38	10	88	344	28958241	28957984	6.330000e-45	193.0
22	TraesCS3B01G312200	chr3D	84.653	202	17	5	3303	3490	385437448	385437649	8.190000e-44	189.0
23	TraesCS3B01G312200	chr3D	83.607	183	20	4	4247	4419	385467485	385467667	4.970000e-36	163.0
24	TraesCS3B01G312200	chr3D	80.220	182	31	4	5460	5638	413670426	413670247	1.400000e-26	132.0
25	TraesCS3B01G312200	chr3D	81.481	162	16	13	90	241	12627508	12627351	3.030000e-23	121.0
26	TraesCS3B01G312200	chr6B	88.951	715	47	11	2237	2925	10258707	10259415	0.000000e+00	854.0
27	TraesCS3B01G312200	chr6B	87.634	558	62	6	1683	2236	465145368	465145922	5.230000e-180	641.0
28	TraesCS3B01G312200	chr6B	83.803	142	20	3	5501	5640	508812838	508812698	1.400000e-26	132.0
29	TraesCS3B01G312200	chr1B	88.440	718	48	12	2234	2927	669738452	669739158	0.000000e+00	833.0
30	TraesCS3B01G312200	chr1B	87.121	528	64	3	1685	2209	15778742	15779268	4.130000e-166	595.0
31	TraesCS3B01G312200	chr1B	84.752	564	81	4	1683	2242	466944086	466943524	1.510000e-155	560.0
32	TraesCS3B01G312200	chr1B	93.662	142	9	0	4104	4245	665276869	665277010	4.860000e-51	213.0
33	TraesCS3B01G312200	chr1B	75.931	403	77	12	3394	3790	418807692	418807304	8.190000e-44	189.0
34	TraesCS3B01G312200	chr1B	89.706	68	5	2	3730	3796	665275914	665275980	1.110000e-12	86.1
35	TraesCS3B01G312200	chr2A	86.517	712	64	13	2237	2925	59913295	59912593	0.000000e+00	754.0
36	TraesCS3B01G312200	chr2A	87.755	539	37	4	2229	2738	753749050	753748512	2.470000e-168	603.0
37	TraesCS3B01G312200	chr2A	91.815	281	19	4	2932	3210	717393820	717393542	7.530000e-104	388.0
38	TraesCS3B01G312200	chr2A	90.909	286	22	4	2928	3211	474948	475231	1.260000e-101	381.0
39	TraesCS3B01G312200	chr2A	87.747	253	28	3	2237	2487	241458439	241458188	6.070000e-75	292.0
40	TraesCS3B01G312200	chr2D	87.519	657	52	12	2237	2868	559219284	559219935	0.000000e+00	732.0
41	TraesCS3B01G312200	chr2D	92.262	504	37	2	2237	2739	73225763	73225261	0.000000e+00	713.0
42	TraesCS3B01G312200	chr2D	88.455	563	58	4	1677	2236	53579642	53580200	0.000000e+00	673.0
43	TraesCS3B01G312200	chr2D	84.534	569	79	7	1677	2241	15492863	15493426	7.010000e-154	555.0
44	TraesCS3B01G312200	chr2D	84.359	569	81	7	1677	2241	186826854	186827418	9.070000e-153	551.0
45	TraesCS3B01G312200	chr2D	91.103	281	23	2	2932	3211	181311802	181312081	4.530000e-101	379.0
46	TraesCS3B01G312200	chr2D	77.049	183	35	5	5459	5637	15133253	15133432	1.420000e-16	99.0
47	TraesCS3B01G312200	chr1D	86.252	691	63	16	2237	2902	453583507	453584190	0.000000e+00	721.0
48	TraesCS3B01G312200	chr1D	84.369	563	82	5	1683	2241	59486154	59485594	1.170000e-151	547.0
49	TraesCS3B01G312200	chr1D	83.363	565	84	9	1677	2234	481036238	481035677	1.190000e-141	514.0
50	TraesCS3B01G312200	chr1D	82.416	563	89	9	1677	2234	481058007	481057450	3.360000e-132	483.0
51	TraesCS3B01G312200	chr1D	77.037	405	70	16	3394	3790	309076009	309075620	1.750000e-50	211.0
52	TraesCS3B01G312200	chr1D	80.426	235	21	19	88	303	79135033	79134805	8.310000e-34	156.0
53	TraesCS3B01G312200	chr1D	78.309	272	36	18	88	340	486210663	486210396	2.990000e-33	154.0
54	TraesCS3B01G312200	chr1D	82.581	155	15	7	89	235	244625313	244625163	6.520000e-25	126.0
55	TraesCS3B01G312200	chr1D	78.462	195	27	10	5452	5640	420651161	420651346	5.070000e-21	113.0
56	TraesCS3B01G312200	chr1D	80.000	170	17	9	88	245	435047789	435047625	6.560000e-20	110.0
57	TraesCS3B01G312200	chr1D	84.337	83	8	3	5566	5648	398867498	398867421	6.650000e-10	76.8
58	TraesCS3B01G312200	chr2B	90.993	544	30	3	2231	2756	651612033	651612575	0.000000e+00	715.0
59	TraesCS3B01G312200	chr2B	83.918	684	79	21	2237	2902	581428448	581429118	5.270000e-175	625.0
60	TraesCS3B01G312200	chr2B	78.977	176	32	4	5459	5631	495146739	495146566	1.410000e-21	115.0
61	TraesCS3B01G312200	chr5B	90.152	528	30	6	2236	2746	547017904	547017382	0.000000e+00	667.0
62	TraesCS3B01G312200	chr5B	79.006	181	29	7	5459	5638	623121637	623121809	1.410000e-21	115.0
63	TraesCS3B01G312200	chr7B	88.022	551	62	3	1689	2236	300672460	300671911	0.000000e+00	649.0
64	TraesCS3B01G312200	chr7B	91.786	280	19	4	2934	3211	643379605	643379882	2.710000e-103	387.0
65	TraesCS3B01G312200	chr1A	87.840	551	58	6	1689	2236	76725731	76725187	6.770000e-179	638.0
66	TraesCS3B01G312200	chr1A	84.560	557	74	10	1683	2232	568765507	568764956	5.460000e-150	542.0
67	TraesCS3B01G312200	chr1A	83.333	564	87	6	1683	2241	275767650	275768211	1.190000e-141	514.0
68	TraesCS3B01G312200	chr1A	90.845	284	21	5	2930	3211	535439303	535439023	5.860000e-100	375.0
69	TraesCS3B01G312200	chr1A	76.543	405	72	15	3394	3790	388836275	388835886	3.780000e-47	200.0
70	TraesCS3B01G312200	chr1A	89.610	77	8	0	5564	5640	517098620	517098696	1.420000e-16	99.0
71	TraesCS3B01G312200	chr4B	86.121	562	71	4	1677	2232	604129490	604130050	3.190000e-167	599.0
72	TraesCS3B01G312200	chr4B	87.938	257	23	5	88	344	182668924	182669172	4.690000e-76	296.0
73	TraesCS3B01G312200	chr4B	81.203	266	32	13	88	340	660939301	660939561	1.360000e-46	198.0
74	TraesCS3B01G312200	chr4B	79.478	268	29	19	94	340	667643468	667643206	3.840000e-37	167.0
75	TraesCS3B01G312200	chr4B	80.000	160	21	11	89	243	17042000	17042153	2.360000e-19	108.0
76	TraesCS3B01G312200	chr4B	82.353	119	14	7	5518	5631	601776518	601776402	5.110000e-16	97.1
77	TraesCS3B01G312200	chr4B	88.889	72	8	0	273	344	396722898	396722969	8.550000e-14	89.8
78	TraesCS3B01G312200	chr6D	85.612	556	73	7	1683	2232	61175138	61174584	1.500000e-160	577.0
79	TraesCS3B01G312200	chr6D	78.571	560	112	8	1683	2236	7678426	7677869	4.560000e-96	363.0
80	TraesCS3B01G312200	chr6D	80.224	268	38	10	88	344	47379649	47379386	2.950000e-43	187.0
81	TraesCS3B01G312200	chr6D	80.435	184	31	4	5459	5640	459736560	459736380	1.080000e-27	135.0
82	TraesCS3B01G312200	chr6D	76.806	263	36	17	88	327	44544963	44544703	2.340000e-24	124.0
83	TraesCS3B01G312200	chr6D	75.094	265	43	15	87	339	27226156	27225903	1.100000e-17	102.0
84	TraesCS3B01G312200	chr6D	78.322	143	27	3	189	329	88827555	88827695	8.550000e-14	89.8
85	TraesCS3B01G312200	chr6D	84.706	85	6	7	88	171	161140614	161140536	1.850000e-10	78.7
86	TraesCS3B01G312200	chr6D	82.353	85	11	1	5547	5631	370364612	370364692	3.100000e-08	71.3
87	TraesCS3B01G312200	chr7D	85.088	570	77	7	1677	2241	414312367	414312933	5.380000e-160	575.0
88	TraesCS3B01G312200	chr7D	79.412	272	32	19	88	340	127017358	127017092	2.970000e-38	171.0
89	TraesCS3B01G312200	chr7D	77.860	271	45	12	85	344	616429807	616429541	2.990000e-33	154.0
90	TraesCS3B01G312200	chr7D	80.328	183	30	6	5467	5647	29801126	29801304	3.890000e-27	134.0
91	TraesCS3B01G312200	chr7D	79.885	174	29	6	5467	5637	41058105	41057935	8.430000e-24	122.0
92	TraesCS3B01G312200	chr7D	80.000	160	27	4	5483	5638	125907605	125907763	5.070000e-21	113.0
93	TraesCS3B01G312200	chr5D	84.574	564	81	5	1677	2236	243093478	243094039	7.010000e-154	555.0
94	TraesCS3B01G312200	chr5D	81.061	264	33	13	88	340	434813796	434813539	1.760000e-45	195.0
95	TraesCS3B01G312200	chr5D	80.303	264	36	14	88	340	238700073	238699815	1.060000e-42	185.0
96	TraesCS3B01G312200	chr5D	77.222	180	33	6	5459	5638	501432113	501432284	1.420000e-16	99.0
97	TraesCS3B01G312200	chr4D	82.616	558	89	5	1683	2236	502047643	502047090	2.590000e-133	486.0
98	TraesCS3B01G312200	chr4D	84.154	467	67	5	1677	2138	379337236	379337700	4.400000e-121	446.0
99	TraesCS3B01G312200	chr4D	81.283	561	78	9	1683	2234	379696303	379695761	4.430000e-116	429.0
100	TraesCS3B01G312200	chr4D	80.952	567	82	12	1676	2236	28557438	28556892	5.740000e-115	425.0
101	TraesCS3B01G312200	chr4D	82.273	440	54	10	1683	2119	419441963	419441545	5.900000e-95	359.0
102	TraesCS3B01G312200	chr4D	83.688	141	20	2	88	227	405705623	405705761	5.040000e-26	130.0
103	TraesCS3B01G312200	chr4D	83.333	144	18	6	5501	5638	487090309	487090452	1.810000e-25	128.0
104	TraesCS3B01G312200	chr4D	81.560	141	16	6	5507	5637	482161232	482161372	2.360000e-19	108.0
105	TraesCS3B01G312200	chr7A	91.756	279	17	5	2935	3211	568942338	568942064	3.500000e-102	383.0
106	TraesCS3B01G312200	chr7A	86.381	257	26	4	2237	2487	8268160	8268413	7.910000e-69	272.0
107	TraesCS3B01G312200	chr7A	83.146	178	25	4	5459	5636	66636548	66636720	2.310000e-34	158.0
108	TraesCS3B01G312200	chr5A	91.071	280	21	4	2934	3211	574021453	574021176	5.860000e-100	375.0
109	TraesCS3B01G312200	chr5A	94.783	115	5	1	3227	3340	536715723	536715609	1.770000e-40	178.0
110	TraesCS3B01G312200	chr6A	89.761	293	23	7	2922	3211	522884202	522884490	9.800000e-98	368.0
111	TraesCS3B01G312200	chr6A	90.566	159	15	0	2233	2391	23260427	23260585	1.750000e-50	211.0
112	TraesCS3B01G312200	chr6A	74.089	247	42	17	88	327	109387071	109387302	1.430000e-11	82.4
113	TraesCS3B01G312200	chr4A	86.328	256	27	3	2237	2487	656908456	656908204	7.910000e-69	272.0
114	TraesCS3B01G312200	chr4A	79.087	263	37	15	88	340	624288351	624288605	1.380000e-36	165.0
115	TraesCS3B01G312200	chr4A	86.667	90	10	2	1	90	719585684	719585771	1.420000e-16	99.0
116	TraesCS3B01G312200	chr4A	86.667	90	10	2	1	90	719624695	719624782	1.420000e-16	99.0
117	TraesCS3B01G312200	chr4A	86.667	90	10	2	1	90	719663814	719663901	1.420000e-16	99.0
118	TraesCS3B01G312200	chrUn	80.000	165	20	12	84	243	39720906	39720750	6.560000e-20	110.0
119	TraesCS3B01G312200	chrUn	80.380	158	17	11	88	237	65831038	65830887	2.360000e-19	108.0
120	TraesCS3B01G312200	chrUn	79.755	163	12	16	88	241	195377475	195377625	1.420000e-16	99.0
121	TraesCS3B01G312200	chrUn	91.176	68	6	0	1683	1750	360475049	360474982	6.610000e-15	93.5
122	TraesCS3B01G312200	chrUn	78.049	164	20	13	88	242	17480288	17480132	8.550000e-14	89.8
123	TraesCS3B01G312200	chrUn	90.323	62	2	4	91	151	1599091	1599149	1.850000e-10	78.7
124	TraesCS3B01G312200	chrUn	89.062	64	5	2	88	150	310357866	310357804	1.850000e-10	78.7
125	TraesCS3B01G312200	chrUn	87.692	65	8	0	88	152	36352391	36352455	6.650000e-10	76.8
126	TraesCS3B01G312200	chrUn	87.692	65	8	0	88	152	214882614	214882550	6.650000e-10	76.8
127	TraesCS3B01G312200	chrUn	92.593	54	1	2	88	138	265024751	265024698	2.390000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G312200	chr3B	501416876	501423066	6190	False	11433.0	11433	100.0000	1	6191	1	chr3B.!!$F2	6190
1	TraesCS3B01G312200	chr3B	13265678	13266389	711	False	773.0	773	86.8900	2237	2925	1	chr3B.!!$F1	688
2	TraesCS3B01G312200	chr3B	674679505	674680059	554	True	599.0	599	86.3310	1683	2232	1	chr3B.!!$R1	549
3	TraesCS3B01G312200	chr3A	507594382	507597551	3169	False	1918.5	2145	90.0260	471	5294	2	chr3A.!!$F6	4823
4	TraesCS3B01G312200	chr3A	27720787	27721351	564	False	641.0	641	87.3020	1676	2236	1	chr3A.!!$F1	560
5	TraesCS3B01G312200	chr3A	467158436	467158963	527	False	625.0	625	88.2460	2376	2902	1	chr3A.!!$F3	526
6	TraesCS3B01G312200	chr3A	507621331	507621964	633	False	623.0	623	84.4980	5324	5976	1	chr3A.!!$F4	652
7	TraesCS3B01G312200	chr3D	385432868	385438518	5650	False	635.4	1753	91.8526	78	4042	5	chr3D.!!$F4	3964
8	TraesCS3B01G312200	chr3D	301732787	301733336	549	False	503.0	503	83.3330	1689	2235	1	chr3D.!!$F2	546
9	TraesCS3B01G312200	chr3D	385467090	385469824	2734	False	492.0	957	89.8034	4056	6191	5	chr3D.!!$F5	2135
10	TraesCS3B01G312200	chr6B	10258707	10259415	708	False	854.0	854	88.9510	2237	2925	1	chr6B.!!$F1	688
11	TraesCS3B01G312200	chr6B	465145368	465145922	554	False	641.0	641	87.6340	1683	2236	1	chr6B.!!$F2	553
12	TraesCS3B01G312200	chr1B	669738452	669739158	706	False	833.0	833	88.4400	2234	2927	1	chr1B.!!$F2	693
13	TraesCS3B01G312200	chr1B	15778742	15779268	526	False	595.0	595	87.1210	1685	2209	1	chr1B.!!$F1	524
14	TraesCS3B01G312200	chr1B	466943524	466944086	562	True	560.0	560	84.7520	1683	2242	1	chr1B.!!$R2	559
15	TraesCS3B01G312200	chr2A	59912593	59913295	702	True	754.0	754	86.5170	2237	2925	1	chr2A.!!$R1	688
16	TraesCS3B01G312200	chr2A	753748512	753749050	538	True	603.0	603	87.7550	2229	2738	1	chr2A.!!$R4	509
17	TraesCS3B01G312200	chr2D	559219284	559219935	651	False	732.0	732	87.5190	2237	2868	1	chr2D.!!$F6	631
18	TraesCS3B01G312200	chr2D	73225261	73225763	502	True	713.0	713	92.2620	2237	2739	1	chr2D.!!$R1	502
19	TraesCS3B01G312200	chr2D	53579642	53580200	558	False	673.0	673	88.4550	1677	2236	1	chr2D.!!$F3	559
20	TraesCS3B01G312200	chr2D	15492863	15493426	563	False	555.0	555	84.5340	1677	2241	1	chr2D.!!$F2	564
21	TraesCS3B01G312200	chr2D	186826854	186827418	564	False	551.0	551	84.3590	1677	2241	1	chr2D.!!$F5	564
22	TraesCS3B01G312200	chr1D	453583507	453584190	683	False	721.0	721	86.2520	2237	2902	1	chr1D.!!$F2	665
23	TraesCS3B01G312200	chr1D	59485594	59486154	560	True	547.0	547	84.3690	1683	2241	1	chr1D.!!$R1	558
24	TraesCS3B01G312200	chr1D	481035677	481036238	561	True	514.0	514	83.3630	1677	2234	1	chr1D.!!$R7	557
25	TraesCS3B01G312200	chr1D	481057450	481058007	557	True	483.0	483	82.4160	1677	2234	1	chr1D.!!$R8	557
26	TraesCS3B01G312200	chr2B	651612033	651612575	542	False	715.0	715	90.9930	2231	2756	1	chr2B.!!$F2	525
27	TraesCS3B01G312200	chr2B	581428448	581429118	670	False	625.0	625	83.9180	2237	2902	1	chr2B.!!$F1	665
28	TraesCS3B01G312200	chr5B	547017382	547017904	522	True	667.0	667	90.1520	2236	2746	1	chr5B.!!$R1	510
29	TraesCS3B01G312200	chr7B	300671911	300672460	549	True	649.0	649	88.0220	1689	2236	1	chr7B.!!$R1	547
30	TraesCS3B01G312200	chr1A	76725187	76725731	544	True	638.0	638	87.8400	1689	2236	1	chr1A.!!$R1	547
31	TraesCS3B01G312200	chr1A	568764956	568765507	551	True	542.0	542	84.5600	1683	2232	1	chr1A.!!$R4	549
32	TraesCS3B01G312200	chr1A	275767650	275768211	561	False	514.0	514	83.3330	1683	2241	1	chr1A.!!$F1	558
33	TraesCS3B01G312200	chr4B	604129490	604130050	560	False	599.0	599	86.1210	1677	2232	1	chr4B.!!$F4	555
34	TraesCS3B01G312200	chr6D	61174584	61175138	554	True	577.0	577	85.6120	1683	2232	1	chr6D.!!$R5	549
35	TraesCS3B01G312200	chr6D	7677869	7678426	557	True	363.0	363	78.5710	1683	2236	1	chr6D.!!$R1	553
36	TraesCS3B01G312200	chr7D	414312367	414312933	566	False	575.0	575	85.0880	1677	2241	1	chr7D.!!$F3	564
37	TraesCS3B01G312200	chr5D	243093478	243094039	561	False	555.0	555	84.5740	1677	2236	1	chr5D.!!$F1	559
38	TraesCS3B01G312200	chr4D	502047090	502047643	553	True	486.0	486	82.6160	1683	2236	1	chr4D.!!$R4	553
39	TraesCS3B01G312200	chr4D	379695761	379696303	542	True	429.0	429	81.2830	1683	2234	1	chr4D.!!$R2	551
40	TraesCS3B01G312200	chr4D	28556892	28557438	546	True	425.0	425	80.9520	1676	2236	1	chr4D.!!$R1	560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
27	28	0.036765	TTCACCCGGTCGAAATCAGG	60.037	55.0	0.00	0.00	0.00	3.86	F
34	35	0.323629	GGTCGAAATCAGGTGACCCA	59.676	55.0	0.00	0.00	44.06	4.51	F
259	266	0.531974	AAAGACAAAGCGGACGAGCA	60.532	50.0	0.00	0.00	40.15	4.26	F
673	683	0.663269	GTTTTAGCTGCCGCCAACAC	60.663	55.0	0.00	0.00	36.60	3.32	F
1960	2876	0.173708	GTGCCGAGAGACCGAAGATT	59.826	55.0	0.00	0.00	0.00	2.40	F
3222	5197	0.454600	TTCTATCCGTGCTCCGTGAC	59.545	55.0	0.00	0.00	33.66	3.67	F
3265	5240	0.036010	CCTGTGCCCAGTGGACTTAG	60.036	60.0	11.95	1.53	36.95	2.18	F
3266	5241	0.036010	CTGTGCCCAGTGGACTTAGG	60.036	60.0	11.95	0.00	33.80	2.69	F
3279	5254	0.107606	ACTTAGGCGAGCGAGAGAGA	60.108	55.0	0.00	0.00	0.00	3.10	F
4818	7968	0.108585	TCAAGGCTCACAGGTTCCAC	59.891	55.0	0.00	0.00	0.00	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1666	2564	0.312729	ATGAACCAAACCCGTTTCGC	59.687	50.000	0.00	0.00	0.00	4.70	R
1807	2721	0.459585	TGTATTCGAAGAGTGGCGGC	60.460	55.000	3.35	0.00	38.43	6.53	R
1960	2876	2.435805	GTCCCTGACTGCTTGATGGATA	59.564	50.000	0.00	0.00	0.00	2.59	R
2276	3201	2.034812	GTGCCGGTTCAATTACAAACCA	59.965	45.455	1.90	0.00	44.25	3.67	R
3260	5235	0.107606	TCTCTCTCGCTCGCCTAAGT	60.108	55.000	0.00	0.00	0.00	2.24	R
4464	7609	0.318699	CGGCCTCGCGATAGAATCAA	60.319	55.000	10.36	0.00	39.76	2.57	R
4603	7753	0.404040	AGAAAACTGATCCCCCGCAA	59.596	50.000	0.00	0.00	0.00	4.85	R
4891	8041	0.660300	CAGTTTCAAACGCGGGAAGC	60.660	55.000	12.47	13.12	43.95	3.86	R
4892	8042	0.660300	GCAGTTTCAAACGCGGGAAG	60.660	55.000	12.47	0.00	36.23	3.46	R
6161	9520	0.111061	TCTGCCTTGTTGTCTGCCAT	59.889	50.000	0.00	0.00	0.00	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.519408	AGAAATTGTTCACCCGGTCG	58.481	50.000	0.00	0.00	36.09	4.79
20	21	1.071071	AGAAATTGTTCACCCGGTCGA	59.929	47.619	0.00	0.00	36.09	4.20
21	22	1.874872	GAAATTGTTCACCCGGTCGAA	59.125	47.619	0.00	0.00	33.61	3.71
22	23	1.970092	AATTGTTCACCCGGTCGAAA	58.030	45.000	0.00	0.00	0.00	3.46
23	24	2.194201	ATTGTTCACCCGGTCGAAAT	57.806	45.000	0.00	0.00	0.00	2.17
24	25	1.515081	TTGTTCACCCGGTCGAAATC	58.485	50.000	0.00	0.00	0.00	2.17
25	26	0.393448	TGTTCACCCGGTCGAAATCA	59.607	50.000	0.00	0.00	0.00	2.57
26	27	1.076332	GTTCACCCGGTCGAAATCAG	58.924	55.000	0.00	0.00	0.00	2.90
27	28	0.036765	TTCACCCGGTCGAAATCAGG	60.037	55.000	0.00	0.00	0.00	3.86
28	29	1.189524	TCACCCGGTCGAAATCAGGT	61.190	55.000	0.00	0.00	0.00	4.00
29	30	1.019278	CACCCGGTCGAAATCAGGTG	61.019	60.000	0.00	6.88	38.89	4.00
30	31	1.189524	ACCCGGTCGAAATCAGGTGA	61.190	55.000	0.00	0.00	0.00	4.02
31	32	0.739813	CCCGGTCGAAATCAGGTGAC	60.740	60.000	0.00	0.00	0.00	3.67
32	33	0.739813	CCGGTCGAAATCAGGTGACC	60.740	60.000	0.00	0.00	45.87	4.02
33	34	0.739813	CGGTCGAAATCAGGTGACCC	60.740	60.000	0.00	0.00	46.47	4.46
34	35	0.323629	GGTCGAAATCAGGTGACCCA	59.676	55.000	0.00	0.00	44.06	4.51
35	36	1.271163	GGTCGAAATCAGGTGACCCAA	60.271	52.381	0.00	0.00	44.06	4.12
36	37	2.500229	GTCGAAATCAGGTGACCCAAA	58.500	47.619	0.00	0.00	0.00	3.28
37	38	3.081804	GTCGAAATCAGGTGACCCAAAT	58.918	45.455	0.00	0.00	0.00	2.32
38	39	3.506067	GTCGAAATCAGGTGACCCAAATT	59.494	43.478	0.00	0.00	0.00	1.82
39	40	4.022329	GTCGAAATCAGGTGACCCAAATTT	60.022	41.667	0.00	1.95	32.73	1.82
40	41	5.182380	GTCGAAATCAGGTGACCCAAATTTA	59.818	40.000	0.00	0.00	31.18	1.40
41	42	5.770663	TCGAAATCAGGTGACCCAAATTTAA	59.229	36.000	0.00	0.00	31.18	1.52
42	43	6.265649	TCGAAATCAGGTGACCCAAATTTAAA	59.734	34.615	0.00	0.00	31.18	1.52
43	44	6.926272	CGAAATCAGGTGACCCAAATTTAAAA	59.074	34.615	0.00	0.00	31.18	1.52
44	45	7.602265	CGAAATCAGGTGACCCAAATTTAAAAT	59.398	33.333	0.00	0.00	31.18	1.82
45	46	9.283768	GAAATCAGGTGACCCAAATTTAAAATT	57.716	29.630	0.00	0.00	31.18	1.82
46	47	8.620116	AATCAGGTGACCCAAATTTAAAATTG	57.380	30.769	8.74	8.74	0.00	2.32
47	48	6.529220	TCAGGTGACCCAAATTTAAAATTGG	58.471	36.000	23.01	23.01	44.61	3.16
63	64	9.709495	TTTAAAATTGGAGACCTGAATTGATTG	57.291	29.630	0.00	0.00	0.00	2.67
64	65	6.923199	AAATTGGAGACCTGAATTGATTGT	57.077	33.333	0.00	0.00	0.00	2.71
65	66	6.923199	AATTGGAGACCTGAATTGATTGTT	57.077	33.333	0.00	0.00	0.00	2.83
66	67	8.421249	AAATTGGAGACCTGAATTGATTGTTA	57.579	30.769	0.00	0.00	0.00	2.41
67	68	7.636150	ATTGGAGACCTGAATTGATTGTTAG	57.364	36.000	0.00	0.00	0.00	2.34
68	69	5.500234	TGGAGACCTGAATTGATTGTTAGG	58.500	41.667	0.00	0.00	0.00	2.69
69	70	4.336713	GGAGACCTGAATTGATTGTTAGGC	59.663	45.833	0.00	0.00	0.00	3.93
70	71	4.273318	AGACCTGAATTGATTGTTAGGCC	58.727	43.478	0.00	0.00	0.00	5.19
71	72	4.018050	AGACCTGAATTGATTGTTAGGCCT	60.018	41.667	11.78	11.78	0.00	5.19
72	73	4.677182	ACCTGAATTGATTGTTAGGCCTT	58.323	39.130	12.58	0.00	0.00	4.35
73	74	5.826643	ACCTGAATTGATTGTTAGGCCTTA	58.173	37.500	12.58	0.00	0.00	2.69
74	75	6.252995	ACCTGAATTGATTGTTAGGCCTTAA	58.747	36.000	12.58	4.71	0.00	1.85
75	76	6.723977	ACCTGAATTGATTGTTAGGCCTTAAA	59.276	34.615	12.58	3.34	0.00	1.52
76	77	7.234577	ACCTGAATTGATTGTTAGGCCTTAAAA	59.765	33.333	12.58	2.73	0.00	1.52
92	93	5.655090	GCCTTAAAAATTAGGGAGCTTACCA	59.345	40.000	10.58	0.00	31.95	3.25
137	138	9.482627	CTTTATAAATAAAGCAAACCACCACAA	57.517	29.630	9.01	0.00	41.69	3.33
139	140	4.744795	AATAAAGCAAACCACCACAACA	57.255	36.364	0.00	0.00	0.00	3.33
146	147	1.931635	AACCACCACAACAACAAGGT	58.068	45.000	0.00	0.00	33.91	3.50
157	158	4.525100	ACAACAACAAGGTACAACAAGGTT	59.475	37.500	0.00	0.00	0.00	3.50
158	159	5.011227	ACAACAACAAGGTACAACAAGGTTT	59.989	36.000	0.00	0.00	0.00	3.27
159	160	5.066968	ACAACAAGGTACAACAAGGTTTG	57.933	39.130	0.00	0.00	0.00	2.93
170	171	1.615883	ACAAGGTTTGCACACACACAA	59.384	42.857	5.20	0.00	0.00	3.33
179	180	1.200716	GCACACACACAATAGCAGCAT	59.799	47.619	0.00	0.00	0.00	3.79
196	197	6.118170	AGCAGCATGACAGATAGTACAAAAT	58.882	36.000	0.00	0.00	39.69	1.82
201	202	7.066284	AGCATGACAGATAGTACAAAATGGTTC	59.934	37.037	0.00	0.00	0.00	3.62
224	225	1.739562	GAGGGCACAGCTCGACAAG	60.740	63.158	0.00	0.00	32.17	3.16
259	266	0.531974	AAAGACAAAGCGGACGAGCA	60.532	50.000	0.00	0.00	40.15	4.26
277	284	4.320494	CGAGCAGCAACAAGGAAACTAATT	60.320	41.667	0.00	0.00	42.68	1.40
292	299	2.246761	TAATTCGGCTCGGGTGGTGG	62.247	60.000	0.00	0.00	0.00	4.61
338	345	1.493950	GAGCCATCGCATGAAGGTCG	61.494	60.000	0.00	0.00	35.37	4.79
362	369	5.163612	GGCAATTAGGGAGCTTAAGTCTTTG	60.164	44.000	4.02	4.04	0.00	2.77
365	372	1.705186	AGGGAGCTTAAGTCTTTGGCA	59.295	47.619	4.02	0.00	0.00	4.92
381	388	8.897752	AGTCTTTGGCAAGCTTAATAATAAGAG	58.102	33.333	0.00	0.00	40.90	2.85
383	390	6.391227	TTGGCAAGCTTAATAATAAGAGGC	57.609	37.500	0.00	3.87	40.90	4.70
386	393	7.461749	TGGCAAGCTTAATAATAAGAGGCTAT	58.538	34.615	0.00	0.00	40.90	2.97
387	394	7.944554	TGGCAAGCTTAATAATAAGAGGCTATT	59.055	33.333	0.00	0.00	40.90	1.73
392	399	9.945904	AGCTTAATAATAAGAGGCTATTACACC	57.054	33.333	3.31	0.00	40.90	4.16
393	400	9.945904	GCTTAATAATAAGAGGCTATTACACCT	57.054	33.333	3.31	0.00	40.90	4.00
410	417	4.666512	ACACCTGAATGTGGCTTCTTATT	58.333	39.130	0.00	0.00	40.62	1.40
429	439	3.374042	TTTGTCTTGTGGGGACTTTGA	57.626	42.857	0.00	0.00	35.04	2.69
435	445	3.069443	TCTTGTGGGGACTTTGAAATTGC	59.931	43.478	0.00	0.00	0.00	3.56
443	453	3.681417	GGACTTTGAAATTGCAGGAATGC	59.319	43.478	0.00	0.00	0.00	3.56
444	454	4.562143	GGACTTTGAAATTGCAGGAATGCT	60.562	41.667	1.53	0.00	35.49	3.79
445	455	4.563061	ACTTTGAAATTGCAGGAATGCTC	58.437	39.130	1.53	0.00	35.49	4.26
446	456	4.282703	ACTTTGAAATTGCAGGAATGCTCT	59.717	37.500	1.53	0.00	35.49	4.09
447	457	3.861276	TGAAATTGCAGGAATGCTCTG	57.139	42.857	1.53	0.00	35.49	3.35
453	463	2.391469	CAGGAATGCTCTGCCTTCG	58.609	57.895	0.00	0.00	34.79	3.79
468	478	5.069119	TCTGCCTTCGCTAATCTATTTCTCA	59.931	40.000	0.00	0.00	35.36	3.27
492	502	8.833493	TCACAACATGCAATCATTTATAGAGAG	58.167	33.333	0.00	0.00	0.00	3.20
525	535	8.531622	TTAACATGCGAACATTCATGAAAAAT	57.468	26.923	13.09	0.89	41.82	1.82
530	540	5.917447	TGCGAACATTCATGAAAAATTTCGA	59.083	32.000	29.13	19.05	40.01	3.71
531	541	6.419116	TGCGAACATTCATGAAAAATTTCGAA	59.581	30.769	29.13	22.81	40.01	3.71
607	617	3.700038	TGCATACATCCAAACATGCATGA	59.300	39.130	32.75	10.72	46.46	3.07
608	618	4.046462	GCATACATCCAAACATGCATGAC	58.954	43.478	32.75	2.44	42.61	3.06
609	619	4.440387	GCATACATCCAAACATGCATGACA	60.440	41.667	32.75	11.36	42.61	3.58
610	620	5.652518	CATACATCCAAACATGCATGACAA	58.347	37.500	32.75	13.10	31.44	3.18
611	621	4.603989	ACATCCAAACATGCATGACAAA	57.396	36.364	32.75	13.78	0.00	2.83
612	622	4.958509	ACATCCAAACATGCATGACAAAA	58.041	34.783	32.75	14.81	0.00	2.44
613	623	5.553123	ACATCCAAACATGCATGACAAAAT	58.447	33.333	32.75	16.30	0.00	1.82
614	624	5.410132	ACATCCAAACATGCATGACAAAATG	59.590	36.000	32.75	26.24	0.00	2.32
615	625	5.211174	TCCAAACATGCATGACAAAATGA	57.789	34.783	32.75	15.31	0.00	2.57
673	683	0.663269	GTTTTAGCTGCCGCCAACAC	60.663	55.000	0.00	0.00	36.60	3.32
758	773	5.576384	GCAAATCCAAGTGCAATAATCGAAA	59.424	36.000	0.00	0.00	40.58	3.46
797	812	5.857268	TGATTCAGCAGATATCCGAATCAA	58.143	37.500	22.45	13.29	45.34	2.57
798	813	5.930569	TGATTCAGCAGATATCCGAATCAAG	59.069	40.000	22.45	1.71	45.34	3.02
807	822	1.378531	TCCGAATCAAGGAAATGCGG	58.621	50.000	0.00	0.00	38.68	5.69
931	951	3.193691	ACGCTACAAATACAGCTCTGTCT	59.806	43.478	5.72	0.00	43.74	3.41
1292	1318	6.052405	ACCATACTAAATGAACGGGTTACA	57.948	37.500	0.00	0.00	0.00	2.41
1302	1331	2.723124	ACGGGTTACATACGTTCGTT	57.277	45.000	2.62	0.00	37.61	3.85
1304	1333	2.228822	ACGGGTTACATACGTTCGTTCT	59.771	45.455	2.62	0.00	37.61	3.01
1305	1334	2.595536	CGGGTTACATACGTTCGTTCTG	59.404	50.000	2.62	4.86	0.00	3.02
1306	1335	2.925563	GGGTTACATACGTTCGTTCTGG	59.074	50.000	2.62	0.00	0.00	3.86
1307	1336	3.367292	GGGTTACATACGTTCGTTCTGGA	60.367	47.826	2.62	0.00	0.00	3.86
1308	1337	3.609807	GGTTACATACGTTCGTTCTGGAC	59.390	47.826	2.62	5.79	0.00	4.02
1329	1358	2.447408	TCTGGTTAGATGGCGAGGTA	57.553	50.000	0.00	0.00	0.00	3.08
1352	1381	1.179814	AGCCAAGAAGACGACGAGGT	61.180	55.000	0.00	0.00	0.00	3.85
1457	2351	9.994432	CAAGGTTCTTACTATTTCATTTGCTAG	57.006	33.333	0.00	0.00	0.00	3.42
1540	2438	1.949547	GCTTGTCAGGCAGCTCAAGAT	60.950	52.381	13.21	0.00	39.39	2.40
1799	2709	2.423538	GCAAGAAACTCACAACCACACT	59.576	45.455	0.00	0.00	0.00	3.55
1807	2721	3.663176	CAACCACACTGGCGGCAG	61.663	66.667	34.75	34.75	42.67	4.85
1960	2876	0.173708	GTGCCGAGAGACCGAAGATT	59.826	55.000	0.00	0.00	0.00	2.40
2087	3006	2.582636	ACCTGCCCAAACCAGATCTAAT	59.417	45.455	0.00	0.00	32.03	1.73
2105	3024	5.138276	TCTAATAACCTCCACACTAGCGAT	58.862	41.667	0.00	0.00	0.00	4.58
2147	3072	4.669965	CGCGAAGAGAGCATTTGAATTTGA	60.670	41.667	0.00	0.00	34.19	2.69
2152	3077	8.017373	CGAAGAGAGCATTTGAATTTGAAGTAA	58.983	33.333	0.00	0.00	0.00	2.24
2156	3081	7.945134	AGAGCATTTGAATTTGAAGTAAGTGT	58.055	30.769	0.00	0.00	0.00	3.55
2275	3200	5.118990	GCCTAATGTGAAGCTCATTACTCA	58.881	41.667	2.96	0.00	36.92	3.41
2276	3201	5.762218	GCCTAATGTGAAGCTCATTACTCAT	59.238	40.000	2.96	0.00	36.92	2.90
2363	3288	3.181469	GCTCATTAGTACCGGTTCATGGA	60.181	47.826	15.04	3.23	0.00	3.41
2697	3672	3.197116	AGGTTGGGTTTCTAGTCGTATGG	59.803	47.826	0.00	0.00	0.00	2.74
2768	4653	4.087182	CAGTACTAAAGGTCTCCTCACCA	58.913	47.826	0.00	0.00	39.16	4.17
2772	4657	0.471211	AAAGGTCTCCTCACCACCGA	60.471	55.000	0.00	0.00	39.16	4.69
2906	4880	2.119457	GCCTTACGAACCGGTAATACG	58.881	52.381	8.00	14.34	32.36	3.06
2927	4902	1.429463	CCGGTTCTGCACTAGTGAAC	58.571	55.000	27.08	19.84	39.26	3.18
2928	4903	1.270094	CCGGTTCTGCACTAGTGAACA	60.270	52.381	27.08	14.34	41.07	3.18
2929	4904	2.612972	CCGGTTCTGCACTAGTGAACAT	60.613	50.000	27.08	0.00	41.07	2.71
2930	4905	3.067106	CGGTTCTGCACTAGTGAACATT	58.933	45.455	27.08	0.00	41.07	2.71
2931	4906	3.498397	CGGTTCTGCACTAGTGAACATTT	59.502	43.478	27.08	0.00	41.07	2.32
2932	4907	4.688879	CGGTTCTGCACTAGTGAACATTTA	59.311	41.667	27.08	1.52	41.07	1.40
2933	4908	5.178623	CGGTTCTGCACTAGTGAACATTTAA	59.821	40.000	27.08	7.03	41.07	1.52
2934	4909	6.603095	GGTTCTGCACTAGTGAACATTTAAG	58.397	40.000	27.08	2.23	41.07	1.85
2935	4910	6.348540	GGTTCTGCACTAGTGAACATTTAAGG	60.349	42.308	27.08	1.45	41.07	2.69
2936	4911	4.695455	TCTGCACTAGTGAACATTTAAGGC	59.305	41.667	27.08	6.76	0.00	4.35
2937	4912	3.756434	TGCACTAGTGAACATTTAAGGCC	59.244	43.478	27.08	0.00	0.00	5.19
2938	4913	4.010349	GCACTAGTGAACATTTAAGGCCT	58.990	43.478	27.08	0.00	0.00	5.19
2939	4914	4.095036	GCACTAGTGAACATTTAAGGCCTC	59.905	45.833	27.08	0.00	0.00	4.70
2940	4915	5.245531	CACTAGTGAACATTTAAGGCCTCA	58.754	41.667	18.45	0.00	0.00	3.86
2941	4916	5.882557	CACTAGTGAACATTTAAGGCCTCAT	59.117	40.000	18.45	0.00	0.00	2.90
2942	4917	6.375455	CACTAGTGAACATTTAAGGCCTCATT	59.625	38.462	18.45	0.00	0.00	2.57
2943	4918	6.948309	ACTAGTGAACATTTAAGGCCTCATTT	59.052	34.615	5.23	0.00	0.00	2.32
2944	4919	6.029346	AGTGAACATTTAAGGCCTCATTTG	57.971	37.500	5.23	4.84	0.00	2.32
2945	4920	5.047092	AGTGAACATTTAAGGCCTCATTTGG	60.047	40.000	5.23	0.00	0.00	3.28
2946	4921	4.837860	TGAACATTTAAGGCCTCATTTGGT	59.162	37.500	5.23	0.00	0.00	3.67
2947	4922	5.306678	TGAACATTTAAGGCCTCATTTGGTT	59.693	36.000	5.23	7.06	0.00	3.67
2948	4923	5.823861	ACATTTAAGGCCTCATTTGGTTT	57.176	34.783	5.23	0.00	0.00	3.27
2949	4924	5.550290	ACATTTAAGGCCTCATTTGGTTTG	58.450	37.500	5.23	0.00	0.00	2.93
2950	4925	5.071653	ACATTTAAGGCCTCATTTGGTTTGT	59.928	36.000	5.23	0.00	0.00	2.83
2951	4926	6.268847	ACATTTAAGGCCTCATTTGGTTTGTA	59.731	34.615	5.23	0.00	0.00	2.41
2952	4927	5.975693	TTAAGGCCTCATTTGGTTTGTAG	57.024	39.130	5.23	0.00	0.00	2.74
2953	4928	2.807676	AGGCCTCATTTGGTTTGTAGG	58.192	47.619	0.00	0.00	0.00	3.18
2954	4929	2.378547	AGGCCTCATTTGGTTTGTAGGA	59.621	45.455	0.00	0.00	0.00	2.94
2955	4930	3.161866	GGCCTCATTTGGTTTGTAGGAA	58.838	45.455	0.00	0.00	0.00	3.36
2956	4931	3.769300	GGCCTCATTTGGTTTGTAGGAAT	59.231	43.478	0.00	0.00	0.00	3.01
2957	4932	4.222810	GGCCTCATTTGGTTTGTAGGAATT	59.777	41.667	0.00	0.00	0.00	2.17
2958	4933	5.279960	GGCCTCATTTGGTTTGTAGGAATTT	60.280	40.000	0.00	0.00	0.00	1.82
2959	4934	6.230472	GCCTCATTTGGTTTGTAGGAATTTT	58.770	36.000	0.00	0.00	0.00	1.82
2960	4935	7.382898	GCCTCATTTGGTTTGTAGGAATTTTA	58.617	34.615	0.00	0.00	0.00	1.52
2961	4936	8.040727	GCCTCATTTGGTTTGTAGGAATTTTAT	58.959	33.333	0.00	0.00	0.00	1.40
2987	4962	7.988937	AGGAATTGTATAGGATAGGATTTGCA	58.011	34.615	0.00	0.00	0.00	4.08
2988	4963	8.448008	AGGAATTGTATAGGATAGGATTTGCAA	58.552	33.333	0.00	0.00	0.00	4.08
2989	4964	9.077885	GGAATTGTATAGGATAGGATTTGCAAA	57.922	33.333	15.44	15.44	0.00	3.68
2991	4966	8.641498	ATTGTATAGGATAGGATTTGCAAAGG	57.359	34.615	18.19	0.00	0.00	3.11
2992	4967	7.387265	TGTATAGGATAGGATTTGCAAAGGA	57.613	36.000	18.19	2.96	0.00	3.36
2993	4968	7.811282	TGTATAGGATAGGATTTGCAAAGGAA	58.189	34.615	18.19	3.55	0.00	3.36
2994	4969	8.278639	TGTATAGGATAGGATTTGCAAAGGAAA	58.721	33.333	18.19	3.91	0.00	3.13
2995	4970	9.131791	GTATAGGATAGGATTTGCAAAGGAAAA	57.868	33.333	18.19	2.48	0.00	2.29
2996	4971	6.933514	AGGATAGGATTTGCAAAGGAAAAA	57.066	33.333	18.19	1.42	0.00	1.94
2997	4972	7.500629	AGGATAGGATTTGCAAAGGAAAAAT	57.499	32.000	18.19	6.18	0.00	1.82
2998	4973	7.921304	AGGATAGGATTTGCAAAGGAAAAATT	58.079	30.769	18.19	0.00	0.00	1.82
2999	4974	8.043113	AGGATAGGATTTGCAAAGGAAAAATTC	58.957	33.333	18.19	7.27	0.00	2.17
3011	4986	4.623932	GGAAAAATTCCTTTGAAGCCCT	57.376	40.909	1.86	0.00	46.57	5.19
3012	4987	4.973168	GGAAAAATTCCTTTGAAGCCCTT	58.027	39.130	1.86	0.00	46.57	3.95
3013	4988	5.376625	GGAAAAATTCCTTTGAAGCCCTTT	58.623	37.500	1.86	0.00	46.57	3.11
3014	4989	6.530120	GGAAAAATTCCTTTGAAGCCCTTTA	58.470	36.000	1.86	0.00	46.57	1.85
3015	4990	6.650807	GGAAAAATTCCTTTGAAGCCCTTTAG	59.349	38.462	1.86	0.00	46.57	1.85
3016	4991	6.747414	AAAATTCCTTTGAAGCCCTTTAGT	57.253	33.333	0.00	0.00	33.05	2.24
3017	4992	6.747414	AAATTCCTTTGAAGCCCTTTAGTT	57.253	33.333	0.00	0.00	33.05	2.24
3018	4993	6.747414	AATTCCTTTGAAGCCCTTTAGTTT	57.253	33.333	0.00	0.00	33.05	2.66
3019	4994	5.529581	TTCCTTTGAAGCCCTTTAGTTTG	57.470	39.130	0.00	0.00	0.00	2.93
3020	4995	4.542697	TCCTTTGAAGCCCTTTAGTTTGT	58.457	39.130	0.00	0.00	0.00	2.83
3021	4996	5.697067	TCCTTTGAAGCCCTTTAGTTTGTA	58.303	37.500	0.00	0.00	0.00	2.41
3022	4997	5.768164	TCCTTTGAAGCCCTTTAGTTTGTAG	59.232	40.000	0.00	0.00	0.00	2.74
3023	4998	5.048013	CCTTTGAAGCCCTTTAGTTTGTAGG	60.048	44.000	0.00	0.00	0.00	3.18
3024	4999	4.986054	TGAAGCCCTTTAGTTTGTAGGA	57.014	40.909	0.00	0.00	0.00	2.94
3025	5000	5.313280	TGAAGCCCTTTAGTTTGTAGGAA	57.687	39.130	0.00	0.00	0.00	3.36
3026	5001	5.887754	TGAAGCCCTTTAGTTTGTAGGAAT	58.112	37.500	0.00	0.00	0.00	3.01
3027	5002	5.710099	TGAAGCCCTTTAGTTTGTAGGAATG	59.290	40.000	0.00	0.00	0.00	2.67
3028	5003	4.600062	AGCCCTTTAGTTTGTAGGAATGG	58.400	43.478	0.00	0.00	0.00	3.16
3029	5004	4.291249	AGCCCTTTAGTTTGTAGGAATGGA	59.709	41.667	0.00	0.00	0.00	3.41
3030	5005	5.044105	AGCCCTTTAGTTTGTAGGAATGGAT	60.044	40.000	0.00	0.00	0.00	3.41
3031	5006	5.656859	GCCCTTTAGTTTGTAGGAATGGATT	59.343	40.000	0.00	0.00	0.00	3.01
3032	5007	6.183360	GCCCTTTAGTTTGTAGGAATGGATTC	60.183	42.308	0.00	0.00	36.08	2.52
3067	5042	8.539117	TGTAGGATAGAGATCAATCTTTCACA	57.461	34.615	0.00	0.00	37.25	3.58
3068	5043	8.417106	TGTAGGATAGAGATCAATCTTTCACAC	58.583	37.037	0.00	0.00	37.25	3.82
3069	5044	7.673641	AGGATAGAGATCAATCTTTCACACT	57.326	36.000	0.00	0.00	37.25	3.55
3070	5045	8.088463	AGGATAGAGATCAATCTTTCACACTT	57.912	34.615	0.00	0.00	37.25	3.16
3071	5046	8.547173	AGGATAGAGATCAATCTTTCACACTTT	58.453	33.333	0.00	0.00	37.25	2.66
3072	5047	9.823647	GGATAGAGATCAATCTTTCACACTTTA	57.176	33.333	0.00	0.00	37.25	1.85
3076	5051	9.784531	AGAGATCAATCTTTCACACTTTAGAAA	57.215	29.630	0.00	0.00	37.25	2.52
3101	5076	8.691661	AAAAAGAAACATTAGCCTAGACTCAA	57.308	30.769	0.00	0.00	0.00	3.02
3102	5077	8.870075	AAAAGAAACATTAGCCTAGACTCAAT	57.130	30.769	0.00	0.00	0.00	2.57
3103	5078	7.856145	AAGAAACATTAGCCTAGACTCAATG	57.144	36.000	0.00	0.00	33.75	2.82
3104	5079	7.187824	AGAAACATTAGCCTAGACTCAATGA	57.812	36.000	12.01	0.00	32.29	2.57
3105	5080	7.624549	AGAAACATTAGCCTAGACTCAATGAA	58.375	34.615	12.01	0.00	32.29	2.57
3106	5081	8.103305	AGAAACATTAGCCTAGACTCAATGAAA	58.897	33.333	12.01	0.00	32.29	2.69
3107	5082	8.635765	AAACATTAGCCTAGACTCAATGAAAA	57.364	30.769	12.01	0.00	32.29	2.29
3108	5083	8.635765	AACATTAGCCTAGACTCAATGAAAAA	57.364	30.769	12.01	0.00	32.29	1.94
3133	5108	8.409358	AATTCCTATCTATACACCAAAATGGC	57.591	34.615	0.00	0.00	42.67	4.40
3134	5109	6.508030	TCCTATCTATACACCAAAATGGCA	57.492	37.500	0.00	0.00	42.67	4.92
3135	5110	7.090319	TCCTATCTATACACCAAAATGGCAT	57.910	36.000	0.00	0.00	42.67	4.40
3136	5111	7.168219	TCCTATCTATACACCAAAATGGCATC	58.832	38.462	0.00	0.00	42.67	3.91
3137	5112	7.017551	TCCTATCTATACACCAAAATGGCATCT	59.982	37.037	0.00	0.00	42.67	2.90
3138	5113	7.335422	CCTATCTATACACCAAAATGGCATCTC	59.665	40.741	0.00	0.00	42.67	2.75
3139	5114	6.252599	TCTATACACCAAAATGGCATCTCT	57.747	37.500	0.00	0.00	42.67	3.10
3140	5115	6.662755	TCTATACACCAAAATGGCATCTCTT	58.337	36.000	0.00	0.00	42.67	2.85
3141	5116	5.841957	ATACACCAAAATGGCATCTCTTC	57.158	39.130	0.00	0.00	42.67	2.87
3142	5117	3.771216	ACACCAAAATGGCATCTCTTCT	58.229	40.909	0.00	0.00	42.67	2.85
3143	5118	4.154942	ACACCAAAATGGCATCTCTTCTT	58.845	39.130	0.00	0.00	42.67	2.52
3144	5119	4.590222	ACACCAAAATGGCATCTCTTCTTT	59.410	37.500	0.00	0.00	42.67	2.52
3145	5120	5.070847	ACACCAAAATGGCATCTCTTCTTTT	59.929	36.000	0.00	0.00	42.67	2.27
3146	5121	6.267471	ACACCAAAATGGCATCTCTTCTTTTA	59.733	34.615	0.00	0.00	42.67	1.52
3147	5122	7.038799	ACACCAAAATGGCATCTCTTCTTTTAT	60.039	33.333	0.00	0.00	42.67	1.40
3148	5123	8.469200	CACCAAAATGGCATCTCTTCTTTTATA	58.531	33.333	0.00	0.00	42.67	0.98
3149	5124	8.689972	ACCAAAATGGCATCTCTTCTTTTATAG	58.310	33.333	0.00	0.00	42.67	1.31
3150	5125	8.906867	CCAAAATGGCATCTCTTCTTTTATAGA	58.093	33.333	0.00	0.00	0.00	1.98
3156	5131	9.685276	TGGCATCTCTTCTTTTATAGAAATTGA	57.315	29.630	0.00	0.00	42.19	2.57
3178	5153	3.806380	GATGCATGTCATCTCACTTCCT	58.194	45.455	2.46	0.00	46.29	3.36
3179	5154	4.953667	GATGCATGTCATCTCACTTCCTA	58.046	43.478	2.46	0.00	46.29	2.94
3180	5155	5.549347	GATGCATGTCATCTCACTTCCTAT	58.451	41.667	2.46	0.00	46.29	2.57
3181	5156	4.700700	TGCATGTCATCTCACTTCCTATG	58.299	43.478	0.00	0.00	0.00	2.23
3182	5157	4.406649	TGCATGTCATCTCACTTCCTATGA	59.593	41.667	0.00	0.00	0.00	2.15
3183	5158	5.071384	TGCATGTCATCTCACTTCCTATGAT	59.929	40.000	0.00	0.00	31.49	2.45
3184	5159	5.996513	GCATGTCATCTCACTTCCTATGATT	59.003	40.000	0.00	0.00	31.49	2.57
3185	5160	6.485984	GCATGTCATCTCACTTCCTATGATTT	59.514	38.462	0.00	0.00	31.49	2.17
3186	5161	7.013083	GCATGTCATCTCACTTCCTATGATTTT	59.987	37.037	0.00	0.00	31.49	1.82
3187	5162	7.854557	TGTCATCTCACTTCCTATGATTTTG	57.145	36.000	0.00	0.00	31.49	2.44
3188	5163	6.317140	TGTCATCTCACTTCCTATGATTTTGC	59.683	38.462	0.00	0.00	31.49	3.68
3189	5164	6.541641	GTCATCTCACTTCCTATGATTTTGCT	59.458	38.462	0.00	0.00	31.49	3.91
3190	5165	7.712639	GTCATCTCACTTCCTATGATTTTGCTA	59.287	37.037	0.00	0.00	31.49	3.49
3191	5166	8.435187	TCATCTCACTTCCTATGATTTTGCTAT	58.565	33.333	0.00	0.00	0.00	2.97
3192	5167	9.064706	CATCTCACTTCCTATGATTTTGCTATT	57.935	33.333	0.00	0.00	0.00	1.73
3193	5168	9.638176	ATCTCACTTCCTATGATTTTGCTATTT	57.362	29.630	0.00	0.00	0.00	1.40
3194	5169	9.113838	TCTCACTTCCTATGATTTTGCTATTTC	57.886	33.333	0.00	0.00	0.00	2.17
3195	5170	9.118300	CTCACTTCCTATGATTTTGCTATTTCT	57.882	33.333	0.00	0.00	0.00	2.52
3217	5192	8.603242	TTCTATAAAATTTCTATCCGTGCTCC	57.397	34.615	0.00	0.00	0.00	4.70
3218	5193	5.924475	ATAAAATTTCTATCCGTGCTCCG	57.076	39.130	0.00	0.00	0.00	4.63
3219	5194	2.981859	AATTTCTATCCGTGCTCCGT	57.018	45.000	0.00	0.00	33.66	4.69
3220	5195	2.225068	ATTTCTATCCGTGCTCCGTG	57.775	50.000	0.00	0.00	33.66	4.94
3221	5196	1.179152	TTTCTATCCGTGCTCCGTGA	58.821	50.000	0.00	0.00	33.66	4.35
3222	5197	0.454600	TTCTATCCGTGCTCCGTGAC	59.545	55.000	0.00	0.00	33.66	3.67
3223	5198	0.678684	TCTATCCGTGCTCCGTGACA	60.679	55.000	0.00	0.00	33.66	3.58
3224	5199	0.525668	CTATCCGTGCTCCGTGACAC	60.526	60.000	0.00	0.00	33.66	3.67
3227	5202	4.293648	CGTGCTCCGTGACACCCA	62.294	66.667	0.00	0.00	33.09	4.51
3230	5205	2.262915	GCTCCGTGACACCCAGAG	59.737	66.667	0.00	5.40	0.00	3.35
3234	5209	2.665000	CGTGACACCCAGAGGCAT	59.335	61.111	0.00	0.00	36.11	4.40
3237	5212	2.226315	TGACACCCAGAGGCATGCT	61.226	57.895	18.92	3.20	36.11	3.79
3250	5225	3.461773	ATGCTAGCCGACGCCTGT	61.462	61.111	13.29	0.00	34.57	4.00
3262	5237	3.958860	GCCTGTGCCCAGTGGACT	61.959	66.667	11.95	0.00	36.95	3.85
3263	5238	2.839098	CCTGTGCCCAGTGGACTT	59.161	61.111	11.95	0.00	36.95	3.01
3264	5239	2.066340	CCTGTGCCCAGTGGACTTA	58.934	57.895	11.95	0.00	36.95	2.24
3265	5240	0.036010	CCTGTGCCCAGTGGACTTAG	60.036	60.000	11.95	1.53	36.95	2.18
3266	5241	0.036010	CTGTGCCCAGTGGACTTAGG	60.036	60.000	11.95	0.00	33.80	2.69
3267	5242	1.377333	GTGCCCAGTGGACTTAGGC	60.377	63.158	11.95	4.65	41.14	3.93
3268	5243	2.125106	GCCCAGTGGACTTAGGCG	60.125	66.667	11.95	0.00	34.35	5.52
3269	5244	2.656069	GCCCAGTGGACTTAGGCGA	61.656	63.158	11.95	0.00	34.35	5.54
3270	5245	1.517832	CCCAGTGGACTTAGGCGAG	59.482	63.158	11.95	0.00	0.00	5.03
3271	5246	1.153549	CCAGTGGACTTAGGCGAGC	60.154	63.158	1.68	0.00	0.00	5.03
3272	5247	1.517257	CAGTGGACTTAGGCGAGCG	60.517	63.158	0.00	0.00	0.00	5.03
3273	5248	1.677966	AGTGGACTTAGGCGAGCGA	60.678	57.895	0.00	0.00	0.00	4.93
3274	5249	1.226717	GTGGACTTAGGCGAGCGAG	60.227	63.158	0.00	0.00	0.00	5.03
3278	5253	0.306533	GACTTAGGCGAGCGAGAGAG	59.693	60.000	0.00	0.00	0.00	3.20
3279	5254	0.107606	ACTTAGGCGAGCGAGAGAGA	60.108	55.000	0.00	0.00	0.00	3.10
3280	5255	1.234821	CTTAGGCGAGCGAGAGAGAT	58.765	55.000	0.00	0.00	0.00	2.75
3281	5256	1.606668	CTTAGGCGAGCGAGAGAGATT	59.393	52.381	0.00	0.00	0.00	2.40
3282	5257	0.947960	TAGGCGAGCGAGAGAGATTG	59.052	55.000	0.00	0.00	0.00	2.67
3283	5258	1.948635	GGCGAGCGAGAGAGATTGC	60.949	63.158	0.00	0.00	0.00	3.56
3284	5259	1.226802	GCGAGCGAGAGAGATTGCA	60.227	57.895	0.00	0.00	31.47	4.08
3285	5260	0.803768	GCGAGCGAGAGAGATTGCAA	60.804	55.000	0.00	0.00	31.47	4.08
3286	5261	0.919981	CGAGCGAGAGAGATTGCAAC	59.080	55.000	0.00	0.00	31.47	4.17
3287	5262	0.919981	GAGCGAGAGAGATTGCAACG	59.080	55.000	0.00	0.00	31.47	4.10
3288	5263	0.244994	AGCGAGAGAGATTGCAACGT	59.755	50.000	0.00	0.00	31.47	3.99
3289	5264	0.368227	GCGAGAGAGATTGCAACGTG	59.632	55.000	0.00	0.00	0.00	4.49
3291	5266	1.402852	CGAGAGAGATTGCAACGTGGA	60.403	52.381	0.00	0.00	0.00	4.02
3292	5267	2.688507	GAGAGAGATTGCAACGTGGAA	58.311	47.619	0.00	0.00	30.73	3.53
3293	5268	3.067106	GAGAGAGATTGCAACGTGGAAA	58.933	45.455	0.00	0.00	29.75	3.13
3294	5269	3.679389	AGAGAGATTGCAACGTGGAAAT	58.321	40.909	0.00	0.00	29.75	2.17
3295	5270	3.686726	AGAGAGATTGCAACGTGGAAATC	59.313	43.478	15.07	15.07	29.75	2.17
3296	5271	3.411446	AGAGATTGCAACGTGGAAATCA	58.589	40.909	23.18	0.00	29.75	2.57
3297	5272	3.820467	AGAGATTGCAACGTGGAAATCAA	59.180	39.130	23.18	4.91	29.75	2.57
3298	5273	4.278170	AGAGATTGCAACGTGGAAATCAAA	59.722	37.500	23.18	0.00	29.75	2.69
3299	5274	4.942852	AGATTGCAACGTGGAAATCAAAA	58.057	34.783	23.18	0.00	29.75	2.44
3300	5275	4.744631	AGATTGCAACGTGGAAATCAAAAC	59.255	37.500	23.18	0.00	29.75	2.43
3316	5600	5.656213	TCAAAACCCTAGAGTAGTACTGC	57.344	43.478	7.76	3.75	0.00	4.40
3317	5601	4.157289	TCAAAACCCTAGAGTAGTACTGCG	59.843	45.833	7.76	0.00	0.00	5.18
3359	5643	9.300681	TCTTCACCTCTACATTGATTGATTTTT	57.699	29.630	0.00	0.00	0.00	1.94
3474	5772	2.430332	GCAGTATCAGCTCTCTTCTGGT	59.570	50.000	0.00	0.00	32.63	4.00
3484	5782	2.125350	CTTCTGGTCGCTGGGAGC	60.125	66.667	15.91	15.91	43.52	4.70
3550	5901	0.632835	ACCATGCCTCCACCATTGAT	59.367	50.000	0.00	0.00	0.00	2.57
3645	6000	2.472695	TTCCTGCTGTATGCGTCTTT	57.527	45.000	0.00	0.00	46.63	2.52
3661	6020	4.319177	CGTCTTTTCTCCTTTCCATCACT	58.681	43.478	0.00	0.00	0.00	3.41
3710	6348	6.183360	CCACGCCTTCAATTACTTAGCAATAA	60.183	38.462	0.00	0.00	0.00	1.40
3792	6430	5.804639	TGTTGTCACAGATAGGCAAGTAAT	58.195	37.500	0.00	0.00	0.00	1.89
3793	6431	6.941857	TGTTGTCACAGATAGGCAAGTAATA	58.058	36.000	0.00	0.00	0.00	0.98
3794	6432	7.390823	TGTTGTCACAGATAGGCAAGTAATAA	58.609	34.615	0.00	0.00	0.00	1.40
3864	6502	1.000607	AGTGCTTGCTGCTTGTTCATG	60.001	47.619	0.00	0.00	43.37	3.07
3868	6506	0.318022	TTGCTGCTTGTTCATGCACG	60.318	50.000	8.85	7.25	35.20	5.34
3893	6531	7.922278	CGTGCATATTGTTAGGGTACTACTAAA	59.078	37.037	10.67	0.61	32.68	1.85
3894	6532	9.038803	GTGCATATTGTTAGGGTACTACTAAAC	57.961	37.037	10.67	7.38	32.68	2.01
3895	6533	8.984855	TGCATATTGTTAGGGTACTACTAAACT	58.015	33.333	10.67	4.09	32.68	2.66
3896	6534	9.828039	GCATATTGTTAGGGTACTACTAAACTT	57.172	33.333	10.67	3.97	32.68	2.66
4102	6743	7.224949	TCGACAAATAATGGTTATCATTGCGTA	59.775	33.333	0.29	0.00	45.00	4.42
4261	7124	5.183228	TGCAGGTAATACTCTTTAAGCACC	58.817	41.667	0.00	0.00	0.00	5.01
4264	7127	7.147549	TGCAGGTAATACTCTTTAAGCACCTAT	60.148	37.037	0.00	0.00	33.46	2.57
4286	7149	5.627499	TTGCACAGATGAATAGGAAACAC	57.373	39.130	0.00	0.00	0.00	3.32
4295	7166	7.011389	CAGATGAATAGGAAACACGCTTATCAA	59.989	37.037	0.00	0.00	0.00	2.57
4296	7167	7.552687	AGATGAATAGGAAACACGCTTATCAAA	59.447	33.333	0.00	0.00	0.00	2.69
4403	7280	6.497785	TTTATCTAGACCCGAATCGATCTC	57.502	41.667	3.36	0.00	0.00	2.75
4422	7563	4.412796	CTCATGGTCTGAGCCTTATGAA	57.587	45.455	4.17	0.00	44.73	2.57
4464	7609	0.617413	CAGCACCAGATGGAAGAGGT	59.383	55.000	5.72	0.00	38.94	3.85
4566	7716	2.423185	TGCCGATTTTCCATGCTTACTG	59.577	45.455	0.00	0.00	0.00	2.74
4582	7732	4.453819	GCTTACTGAACTGAACTGAGCATT	59.546	41.667	0.00	0.00	0.00	3.56
4596	7746	5.130292	CTGAGCATTCACCATCAGTTTTT	57.870	39.130	0.00	0.00	35.52	1.94
4618	7768	3.448469	TTTTTGCGGGGGATCAGTT	57.552	47.368	0.00	0.00	0.00	3.16
4619	7769	1.710816	TTTTTGCGGGGGATCAGTTT	58.289	45.000	0.00	0.00	0.00	2.66
4620	7770	1.710816	TTTTGCGGGGGATCAGTTTT	58.289	45.000	0.00	0.00	0.00	2.43
4621	7771	1.253100	TTTGCGGGGGATCAGTTTTC	58.747	50.000	0.00	0.00	0.00	2.29
4622	7772	0.404040	TTGCGGGGGATCAGTTTTCT	59.596	50.000	0.00	0.00	0.00	2.52
4623	7773	0.404040	TGCGGGGGATCAGTTTTCTT	59.596	50.000	0.00	0.00	0.00	2.52
4624	7774	1.203001	TGCGGGGGATCAGTTTTCTTT	60.203	47.619	0.00	0.00	0.00	2.52
4625	7775	1.893137	GCGGGGGATCAGTTTTCTTTT	59.107	47.619	0.00	0.00	0.00	2.27
4626	7776	2.299013	GCGGGGGATCAGTTTTCTTTTT	59.701	45.455	0.00	0.00	0.00	1.94
4637	7787	8.980481	ATCAGTTTTCTTTTTAACCTGAGAGA	57.020	30.769	0.00	0.00	0.00	3.10
4638	7788	8.801882	TCAGTTTTCTTTTTAACCTGAGAGAA	57.198	30.769	0.00	0.00	0.00	2.87
4639	7789	9.408648	TCAGTTTTCTTTTTAACCTGAGAGAAT	57.591	29.630	0.00	0.00	0.00	2.40
4674	7824	1.470098	GATTCAGCTGCAATCCACGTT	59.530	47.619	19.77	0.00	0.00	3.99
4755	7905	4.098960	TCTCTGACCAAACTCAACGTAACT	59.901	41.667	0.00	0.00	0.00	2.24
4773	7923	2.050144	ACTAGCCCCATCATCGTCATT	58.950	47.619	0.00	0.00	0.00	2.57
4818	7968	0.108585	TCAAGGCTCACAGGTTCCAC	59.891	55.000	0.00	0.00	0.00	4.02
4830	7980	4.011517	TTCCACCTTCCGCCGACC	62.012	66.667	0.00	0.00	0.00	4.79
4846	7996	3.119602	GCCGACCTTTTTCCTACCATTTC	60.120	47.826	0.00	0.00	0.00	2.17
4851	8001	5.473273	ACCTTTTTCCTACCATTTCCCTTT	58.527	37.500	0.00	0.00	0.00	3.11
4859	8009	4.455877	CCTACCATTTCCCTTTATCGATGC	59.544	45.833	8.54	0.00	0.00	3.91
4889	8039	3.064408	GCTTCATGTTTCTCGATCATGCA	59.936	43.478	12.12	0.00	38.82	3.96
4890	8040	4.261072	GCTTCATGTTTCTCGATCATGCAT	60.261	41.667	0.00	0.00	38.82	3.96
4891	8041	4.806342	TCATGTTTCTCGATCATGCATG	57.194	40.909	21.07	21.07	38.82	4.06
4892	8042	3.002965	TCATGTTTCTCGATCATGCATGC	59.997	43.478	22.25	11.82	38.82	4.06
4899	8049	1.285023	GATCATGCATGCTTCCCGC	59.715	57.895	22.25	0.00	39.77	6.13
4910	8060	0.660300	GCTTCCCGCGTTTGAAACTG	60.660	55.000	4.92	1.42	0.00	3.16
4948	8098	3.769300	TGAGATCTGGATTTCTCGTCCAA	59.231	43.478	0.00	0.00	44.69	3.53
5023	8195	3.134623	TGTATGTGAACCAGATAGGCAGG	59.865	47.826	0.00	0.00	43.14	4.85
5035	8207	5.059833	CAGATAGGCAGGGTCTATTTCAAC	58.940	45.833	0.00	0.00	29.95	3.18
5103	8275	0.031449	GCTCAGCTCATACCTCGGAC	59.969	60.000	0.00	0.00	0.00	4.79
5157	8329	2.825836	CTCCCGGCTCAACATGCC	60.826	66.667	0.00	0.00	46.42	4.40
5195	8367	7.912250	CGCTTCAGTTTCAAGATTATAAGCAAT	59.088	33.333	3.17	0.00	37.30	3.56
5207	8384	8.627208	AGATTATAAGCAATGGACCACTATTG	57.373	34.615	0.00	0.00	44.22	1.90
5273	8450	9.962759	GTCTTATGTTAATTCGAATTACGTGTT	57.037	29.630	26.23	13.87	43.13	3.32
5295	8472	4.829872	TTCTGTAACACCGGGTGATAAT	57.170	40.909	32.72	17.15	36.96	1.28
5296	8473	4.395959	TCTGTAACACCGGGTGATAATC	57.604	45.455	32.72	14.77	36.96	1.75
5297	8474	3.120792	CTGTAACACCGGGTGATAATCG	58.879	50.000	32.72	12.93	36.96	3.34
5298	8475	2.496871	TGTAACACCGGGTGATAATCGT	59.503	45.455	32.72	6.26	36.96	3.73
5301	8478	1.134907	ACACCGGGTGATAATCGTGTC	60.135	52.381	32.72	0.00	36.96	3.67
5302	8479	1.134936	CACCGGGTGATAATCGTGTCA	60.135	52.381	22.77	0.00	35.23	3.58
5303	8480	1.134907	ACCGGGTGATAATCGTGTCAC	60.135	52.381	6.32	0.00	43.25	3.67
5311	8488	5.348986	GTGATAATCGTGTCACCACTACAT	58.651	41.667	0.00	0.00	39.34	2.29
5313	8490	7.145985	GTGATAATCGTGTCACCACTACATAT	58.854	38.462	0.00	0.00	39.34	1.78
5341	8683	1.478510	AGATAATCCGCTATGCCTCCG	59.521	52.381	0.00	0.00	0.00	4.63
5343	8685	1.334160	TAATCCGCTATGCCTCCGAA	58.666	50.000	0.00	0.00	0.00	4.30
5388	8730	6.872920	TGTTTGTTTAGCCCATGGATTATTC	58.127	36.000	15.22	0.06	0.00	1.75
5400	8743	2.104111	TGGATTATTCTGTGGGGTAGCG	59.896	50.000	0.00	0.00	0.00	4.26
5421	8764	5.032220	GCGTAACAGGGTACATTATTTTGC	58.968	41.667	0.00	0.00	0.00	3.68
5465	8808	5.934625	CCTAGATTATCATAAGTGTGTGGCC	59.065	44.000	0.00	0.00	0.00	5.36
5469	8812	0.322456	TCATAAGTGTGTGGCCAGGC	60.322	55.000	5.11	1.26	0.00	4.85
5479	8822	2.360475	GGCCAGGCCTCAGTTGAC	60.360	66.667	24.99	0.00	46.69	3.18
5480	8823	2.753029	GCCAGGCCTCAGTTGACT	59.247	61.111	0.00	0.00	0.00	3.41
5481	8824	1.553690	GGCCAGGCCTCAGTTGACTA	61.554	60.000	24.99	0.00	46.69	2.59
5482	8825	0.324943	GCCAGGCCTCAGTTGACTAA	59.675	55.000	0.00	0.00	0.00	2.24
5483	8826	1.677217	GCCAGGCCTCAGTTGACTAAG	60.677	57.143	0.00	0.00	0.00	2.18
5484	8827	1.902508	CCAGGCCTCAGTTGACTAAGA	59.097	52.381	0.00	0.00	0.00	2.10
5485	8828	2.354203	CCAGGCCTCAGTTGACTAAGAC	60.354	54.545	0.00	0.00	0.00	3.01
5486	8829	2.564947	CAGGCCTCAGTTGACTAAGACT	59.435	50.000	0.00	0.00	0.00	3.24
5487	8830	3.007398	CAGGCCTCAGTTGACTAAGACTT	59.993	47.826	0.00	0.00	0.00	3.01
5488	8831	4.220821	CAGGCCTCAGTTGACTAAGACTTA	59.779	45.833	0.00	0.00	0.00	2.24
5489	8832	4.838986	AGGCCTCAGTTGACTAAGACTTAA	59.161	41.667	0.00	0.00	0.00	1.85
5490	8833	4.930405	GGCCTCAGTTGACTAAGACTTAAC	59.070	45.833	0.00	0.00	0.00	2.01
5491	8834	4.930405	GCCTCAGTTGACTAAGACTTAACC	59.070	45.833	0.00	0.00	0.00	2.85
5492	8835	5.510861	GCCTCAGTTGACTAAGACTTAACCA	60.511	44.000	0.00	0.00	0.00	3.67
5493	8836	6.522054	CCTCAGTTGACTAAGACTTAACCAA	58.478	40.000	0.00	1.40	0.00	3.67
5494	8837	6.424207	CCTCAGTTGACTAAGACTTAACCAAC	59.576	42.308	20.68	20.68	34.38	3.77
5499	8842	6.342338	TGACTAAGACTTAACCAACTCTCC	57.658	41.667	0.00	0.00	0.00	3.71
5577	8928	7.007725	GCACAAATCTCAATGTAAAATCTCACG	59.992	37.037	0.00	0.00	0.00	4.35
5589	8940	8.227731	TGTAAAATCTCACGAATATAGCATCG	57.772	34.615	0.00	4.40	44.33	3.84
5593	8944	5.284428	TCTCACGAATATAGCATCGACTC	57.716	43.478	11.05	0.00	41.43	3.36
5596	8947	4.755123	TCACGAATATAGCATCGACTCAGA	59.245	41.667	11.05	1.35	41.43	3.27
5598	8949	4.085195	CGAATATAGCATCGACTCAGACG	58.915	47.826	0.00	0.00	41.43	4.18
5614	8965	3.252701	TCAGACGTAACCAAGTCTCAGTC	59.747	47.826	0.00	0.00	44.98	3.51
5667	9018	2.961062	CTCATAAATTGCCTTGAGGGGG	59.039	50.000	0.00	0.00	33.54	5.40
5674	9025	2.812664	GCCTTGAGGGGGCTTATTG	58.187	57.895	0.00	0.00	45.57	1.90
5681	9032	2.782925	TGAGGGGGCTTATTGCAGATTA	59.217	45.455	0.00	0.00	45.15	1.75
5684	9039	4.819610	AGGGGGCTTATTGCAGATTATTT	58.180	39.130	0.00	0.00	45.15	1.40
5728	9086	7.497909	AGAGTTATCCAACATGTTATTTACCCG	59.502	37.037	11.53	0.00	37.10	5.28
5754	9112	6.817641	TCAATGCCATCACAATATTTGAAACC	59.182	34.615	4.99	0.00	0.00	3.27
5763	9121	8.877864	TCACAATATTTGAAACCCTATCTTGT	57.122	30.769	0.00	0.00	0.00	3.16
5766	9124	8.749354	ACAATATTTGAAACCCTATCTTGTTCC	58.251	33.333	0.00	0.00	0.00	3.62
5769	9127	2.304761	TGAAACCCTATCTTGTTCCGCT	59.695	45.455	0.00	0.00	0.00	5.52
5774	9132	1.134367	CCTATCTTGTTCCGCTCGACA	59.866	52.381	0.00	0.00	0.00	4.35
5777	9135	0.317160	TCTTGTTCCGCTCGACATGT	59.683	50.000	0.00	0.00	0.00	3.21
5801	9159	1.269413	GCCCATTCTTCCATCAATGCG	60.269	52.381	0.00	0.00	0.00	4.73
5811	9169	2.016318	CCATCAATGCGCTCCACTAAA	58.984	47.619	9.73	0.00	0.00	1.85
5816	9174	2.246719	ATGCGCTCCACTAAATCTCC	57.753	50.000	9.73	0.00	0.00	3.71
5817	9175	0.178068	TGCGCTCCACTAAATCTCCC	59.822	55.000	9.73	0.00	0.00	4.30
5838	9196	3.503748	CCTGTTCTCACTTCACCCAAATC	59.496	47.826	0.00	0.00	0.00	2.17
5839	9197	3.486383	TGTTCTCACTTCACCCAAATCC	58.514	45.455	0.00	0.00	0.00	3.01
5853	9211	3.356290	CCAAATCCTCCAAACCCTAGTG	58.644	50.000	0.00	0.00	0.00	2.74
5860	9218	3.193479	CCTCCAAACCCTAGTGCAAAATC	59.807	47.826	0.00	0.00	0.00	2.17
5891	9249	2.890814	GGAGATCCGGGGATTCTTCTA	58.109	52.381	0.00	0.00	34.60	2.10
5903	9261	6.096846	CGGGGATTCTTCTATTGGAATTGTTT	59.903	38.462	0.00	0.00	33.05	2.83
5972	9330	2.965572	CCCATGTGGCCTGTTTATTG	57.034	50.000	3.32	0.00	0.00	1.90
5991	9349	8.349983	GTTTATTGTCTCCATAACTTGTTGTGT	58.650	33.333	8.89	0.00	0.00	3.72
6116	9475	4.826733	GTGATATAATCCACCATGCCACAA	59.173	41.667	0.00	0.00	0.00	3.33
6161	9520	5.566429	GCCATGTTTGTTTACATCATGTGGA	60.566	40.000	0.00	0.00	36.64	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	1.515081	TCGACCGGGTGAACAATTTC	58.485	50.000	3.30	0.00	0.00	2.17
2	3	1.970092	TTCGACCGGGTGAACAATTT	58.030	45.000	3.30	0.00	0.00	1.82
4	5	2.081462	GATTTCGACCGGGTGAACAAT	58.919	47.619	3.30	0.44	0.00	2.71
6	7	0.393448	TGATTTCGACCGGGTGAACA	59.607	50.000	3.30	1.80	0.00	3.18
7	8	1.076332	CTGATTTCGACCGGGTGAAC	58.924	55.000	3.30	0.00	0.00	3.18
9	10	1.189524	ACCTGATTTCGACCGGGTGA	61.190	55.000	3.30	0.00	40.35	4.02
10	11	1.295423	ACCTGATTTCGACCGGGTG	59.705	57.895	3.30	0.00	40.35	4.61
11	12	1.189524	TCACCTGATTTCGACCGGGT	61.190	55.000	6.32	0.00	42.48	5.28
12	13	0.739813	GTCACCTGATTTCGACCGGG	60.740	60.000	6.32	0.00	34.99	5.73
13	14	0.739813	GGTCACCTGATTTCGACCGG	60.740	60.000	0.00	0.00	38.68	5.28
14	15	2.750815	GGTCACCTGATTTCGACCG	58.249	57.895	0.00	0.00	38.68	4.79
15	16	0.323629	TGGGTCACCTGATTTCGACC	59.676	55.000	0.00	0.00	45.95	4.79
16	17	2.178912	TTGGGTCACCTGATTTCGAC	57.821	50.000	0.00	0.00	37.76	4.20
17	18	2.940994	TTTGGGTCACCTGATTTCGA	57.059	45.000	0.00	0.00	37.76	3.71
18	19	4.519540	AAATTTGGGTCACCTGATTTCG	57.480	40.909	0.00	0.00	37.76	3.46
19	20	8.846943	ATTTTAAATTTGGGTCACCTGATTTC	57.153	30.769	0.00	0.00	35.29	2.17
20	21	9.065798	CAATTTTAAATTTGGGTCACCTGATTT	57.934	29.630	12.85	1.05	36.56	2.17
21	22	7.665145	CCAATTTTAAATTTGGGTCACCTGATT	59.335	33.333	24.76	1.36	38.98	2.57
22	23	7.017056	TCCAATTTTAAATTTGGGTCACCTGAT	59.983	33.333	28.74	0.00	42.21	2.90
23	24	6.327626	TCCAATTTTAAATTTGGGTCACCTGA	59.672	34.615	28.74	13.37	42.21	3.86
24	25	6.529220	TCCAATTTTAAATTTGGGTCACCTG	58.471	36.000	28.74	11.18	42.21	4.00
25	26	6.556874	TCTCCAATTTTAAATTTGGGTCACCT	59.443	34.615	28.74	0.00	42.21	4.00
26	27	6.649141	GTCTCCAATTTTAAATTTGGGTCACC	59.351	38.462	28.74	15.81	42.21	4.02
27	28	6.649141	GGTCTCCAATTTTAAATTTGGGTCAC	59.351	38.462	28.74	23.14	42.21	3.67
28	29	6.556874	AGGTCTCCAATTTTAAATTTGGGTCA	59.443	34.615	28.74	16.42	42.21	4.02
29	30	6.873605	CAGGTCTCCAATTTTAAATTTGGGTC	59.126	38.462	28.74	21.32	42.21	4.46
30	31	6.556874	TCAGGTCTCCAATTTTAAATTTGGGT	59.443	34.615	28.74	14.14	42.21	4.51
31	32	7.003402	TCAGGTCTCCAATTTTAAATTTGGG	57.997	36.000	28.74	22.19	42.21	4.12
32	33	9.506018	AATTCAGGTCTCCAATTTTAAATTTGG	57.494	29.630	25.82	25.82	43.10	3.28
37	38	9.709495	CAATCAATTCAGGTCTCCAATTTTAAA	57.291	29.630	0.00	0.00	0.00	1.52
38	39	8.869109	ACAATCAATTCAGGTCTCCAATTTTAA	58.131	29.630	0.00	0.00	0.00	1.52
39	40	8.421249	ACAATCAATTCAGGTCTCCAATTTTA	57.579	30.769	0.00	0.00	0.00	1.52
40	41	7.307131	ACAATCAATTCAGGTCTCCAATTTT	57.693	32.000	0.00	0.00	0.00	1.82
41	42	6.923199	ACAATCAATTCAGGTCTCCAATTT	57.077	33.333	0.00	0.00	0.00	1.82
42	43	6.923199	AACAATCAATTCAGGTCTCCAATT	57.077	33.333	0.00	0.00	0.00	2.32
43	44	6.604795	CCTAACAATCAATTCAGGTCTCCAAT	59.395	38.462	0.00	0.00	0.00	3.16
44	45	5.945784	CCTAACAATCAATTCAGGTCTCCAA	59.054	40.000	0.00	0.00	0.00	3.53
45	46	5.500234	CCTAACAATCAATTCAGGTCTCCA	58.500	41.667	0.00	0.00	0.00	3.86
46	47	4.336713	GCCTAACAATCAATTCAGGTCTCC	59.663	45.833	0.00	0.00	0.00	3.71
47	48	4.336713	GGCCTAACAATCAATTCAGGTCTC	59.663	45.833	0.00	0.00	0.00	3.36
48	49	4.018050	AGGCCTAACAATCAATTCAGGTCT	60.018	41.667	1.29	0.00	33.34	3.85
49	50	4.273318	AGGCCTAACAATCAATTCAGGTC	58.727	43.478	1.29	0.00	0.00	3.85
50	51	4.322057	AGGCCTAACAATCAATTCAGGT	57.678	40.909	1.29	0.00	0.00	4.00
51	52	6.773976	TTAAGGCCTAACAATCAATTCAGG	57.226	37.500	5.16	0.00	0.00	3.86
52	53	9.657419	ATTTTTAAGGCCTAACAATCAATTCAG	57.343	29.630	5.16	0.00	0.00	3.02
57	58	8.536175	CCCTAATTTTTAAGGCCTAACAATCAA	58.464	33.333	5.16	0.00	0.00	2.57
58	59	7.896496	TCCCTAATTTTTAAGGCCTAACAATCA	59.104	33.333	5.16	0.00	0.00	2.57
59	60	8.301252	TCCCTAATTTTTAAGGCCTAACAATC	57.699	34.615	5.16	0.00	0.00	2.67
60	61	7.147724	GCTCCCTAATTTTTAAGGCCTAACAAT	60.148	37.037	5.16	3.24	0.00	2.71
61	62	6.153851	GCTCCCTAATTTTTAAGGCCTAACAA	59.846	38.462	5.16	0.00	0.00	2.83
62	63	5.655090	GCTCCCTAATTTTTAAGGCCTAACA	59.345	40.000	5.16	0.00	0.00	2.41
63	64	5.892119	AGCTCCCTAATTTTTAAGGCCTAAC	59.108	40.000	5.16	0.00	0.00	2.34
64	65	6.087276	AGCTCCCTAATTTTTAAGGCCTAA	57.913	37.500	5.16	0.00	0.00	2.69
65	66	5.727243	AGCTCCCTAATTTTTAAGGCCTA	57.273	39.130	5.16	0.00	0.00	3.93
66	67	4.609866	AGCTCCCTAATTTTTAAGGCCT	57.390	40.909	0.00	0.00	0.00	5.19
67	68	5.068723	GGTAAGCTCCCTAATTTTTAAGGCC	59.931	44.000	0.00	0.00	0.00	5.19
68	69	5.655090	TGGTAAGCTCCCTAATTTTTAAGGC	59.345	40.000	4.21	0.00	0.00	4.35
69	70	7.712204	TTGGTAAGCTCCCTAATTTTTAAGG	57.288	36.000	4.21	0.00	0.00	2.69
70	71	9.990360	TTTTTGGTAAGCTCCCTAATTTTTAAG	57.010	29.630	4.21	0.00	0.00	1.85
124	125	1.999024	CTTGTTGTTGTGGTGGTTTGC	59.001	47.619	0.00	0.00	0.00	3.68
137	138	4.619628	GCAAACCTTGTTGTACCTTGTTGT	60.620	41.667	0.00	0.00	0.00	3.32
139	140	3.511934	TGCAAACCTTGTTGTACCTTGTT	59.488	39.130	0.00	0.00	0.00	2.83
146	147	2.820197	TGTGTGTGCAAACCTTGTTGTA	59.180	40.909	4.11	0.00	0.00	2.41
157	158	1.001487	GCTGCTATTGTGTGTGTGCAA	60.001	47.619	0.00	0.00	0.00	4.08
158	159	0.592637	GCTGCTATTGTGTGTGTGCA	59.407	50.000	0.00	0.00	0.00	4.57
159	160	0.592637	TGCTGCTATTGTGTGTGTGC	59.407	50.000	0.00	0.00	0.00	4.57
170	171	6.410942	TTGTACTATCTGTCATGCTGCTAT	57.589	37.500	0.00	0.00	0.00	2.97
179	180	6.371548	GCAGAACCATTTTGTACTATCTGTCA	59.628	38.462	0.00	0.00	36.36	3.58
259	266	3.057526	GCCGAATTAGTTTCCTTGTTGCT	60.058	43.478	0.00	0.00	0.00	3.91
314	321	0.452987	TTCATGCGATGGCTCTTTGC	59.547	50.000	0.15	0.00	40.82	3.68
316	323	1.340405	ACCTTCATGCGATGGCTCTTT	60.340	47.619	0.15	0.00	39.56	2.52
326	333	1.003545	CTAATTGCCGACCTTCATGCG	60.004	52.381	0.00	0.00	0.00	4.73
330	337	1.209504	CTCCCTAATTGCCGACCTTCA	59.790	52.381	0.00	0.00	0.00	3.02
338	345	4.157849	AGACTTAAGCTCCCTAATTGCC	57.842	45.455	1.29	0.00	0.00	4.52
362	369	7.929941	ATAGCCTCTTATTATTAAGCTTGCC	57.070	36.000	9.86	0.00	35.72	4.52
381	388	2.618709	GCCACATTCAGGTGTAATAGCC	59.381	50.000	0.00	0.00	37.06	3.93
383	390	5.431765	AGAAGCCACATTCAGGTGTAATAG	58.568	41.667	0.00	0.00	37.06	1.73
386	393	3.788227	AGAAGCCACATTCAGGTGTAA	57.212	42.857	0.00	0.00	37.06	2.41
387	394	3.788227	AAGAAGCCACATTCAGGTGTA	57.212	42.857	0.00	0.00	37.06	2.90
389	396	5.047802	ACAAATAAGAAGCCACATTCAGGTG	60.048	40.000	0.00	0.00	38.52	4.00
391	398	5.416952	AGACAAATAAGAAGCCACATTCAGG	59.583	40.000	0.00	0.00	0.00	3.86
392	399	6.506500	AGACAAATAAGAAGCCACATTCAG	57.493	37.500	0.00	0.00	0.00	3.02
393	400	6.265196	ACAAGACAAATAAGAAGCCACATTCA	59.735	34.615	0.00	0.00	0.00	2.57
394	401	6.583806	CACAAGACAAATAAGAAGCCACATTC	59.416	38.462	0.00	0.00	0.00	2.67
395	402	6.449698	CACAAGACAAATAAGAAGCCACATT	58.550	36.000	0.00	0.00	0.00	2.71
396	403	5.047802	CCACAAGACAAATAAGAAGCCACAT	60.048	40.000	0.00	0.00	0.00	3.21
410	417	3.374042	TTCAAAGTCCCCACAAGACAA	57.626	42.857	0.00	0.00	36.68	3.18
435	445	1.712977	GCGAAGGCAGAGCATTCCTG	61.713	60.000	10.30	0.00	44.89	3.86
443	453	5.537188	AGAAATAGATTAGCGAAGGCAGAG	58.463	41.667	0.00	0.00	43.41	3.35
444	454	5.069119	TGAGAAATAGATTAGCGAAGGCAGA	59.931	40.000	0.00	0.00	43.41	4.26
445	455	5.176590	GTGAGAAATAGATTAGCGAAGGCAG	59.823	44.000	0.00	0.00	43.41	4.85
446	456	5.050490	GTGAGAAATAGATTAGCGAAGGCA	58.950	41.667	0.00	0.00	43.41	4.75
447	457	5.050490	TGTGAGAAATAGATTAGCGAAGGC	58.950	41.667	0.00	0.00	40.37	4.35
448	458	6.535150	TGTTGTGAGAAATAGATTAGCGAAGG	59.465	38.462	0.00	0.00	0.00	3.46
453	463	7.019774	TGCATGTTGTGAGAAATAGATTAGC	57.980	36.000	0.00	0.00	0.00	3.09
468	478	8.969260	TCTCTCTATAAATGATTGCATGTTGT	57.031	30.769	0.00	0.00	34.26	3.32
492	502	2.225491	TGTTCGCATGTTAAGGTGCTTC	59.775	45.455	9.54	2.53	39.16	3.86
525	535	7.065204	TGCATACACTATTAGCAACATTCGAAA	59.935	33.333	0.00	0.00	31.42	3.46
530	540	6.772233	TGGATGCATACACTATTAGCAACATT	59.228	34.615	7.78	0.00	38.85	2.71
531	541	6.298361	TGGATGCATACACTATTAGCAACAT	58.702	36.000	7.78	0.00	38.85	2.71
607	617	3.573967	AGATTCGGGCTTTGTCATTTTGT	59.426	39.130	0.00	0.00	0.00	2.83
608	618	3.922240	CAGATTCGGGCTTTGTCATTTTG	59.078	43.478	0.00	0.00	0.00	2.44
609	619	3.573967	ACAGATTCGGGCTTTGTCATTTT	59.426	39.130	0.00	0.00	0.00	1.82
610	620	3.057315	CACAGATTCGGGCTTTGTCATTT	60.057	43.478	0.00	0.00	0.00	2.32
611	621	2.489329	CACAGATTCGGGCTTTGTCATT	59.511	45.455	0.00	0.00	0.00	2.57
612	622	2.086869	CACAGATTCGGGCTTTGTCAT	58.913	47.619	0.00	0.00	0.00	3.06
613	623	1.071542	TCACAGATTCGGGCTTTGTCA	59.928	47.619	0.00	0.00	0.00	3.58
614	624	1.734465	CTCACAGATTCGGGCTTTGTC	59.266	52.381	0.00	0.00	0.00	3.18
615	625	1.611673	CCTCACAGATTCGGGCTTTGT	60.612	52.381	0.00	0.00	0.00	2.83
673	683	2.132996	TGGCCAAGCACAAACTGGG	61.133	57.895	0.61	0.00	33.37	4.45
676	686	0.901124	TTTGTGGCCAAGCACAAACT	59.099	45.000	7.24	0.00	43.63	2.66
758	773	3.520721	TGAATCATCGATGGGCCTATCAT	59.479	43.478	26.72	16.55	0.00	2.45
825	840	0.523335	GCGTTGGATTGGATGCGAAC	60.523	55.000	0.00	0.00	0.00	3.95
830	845	0.742505	ATGCAGCGTTGGATTGGATG	59.257	50.000	0.00	0.00	30.30	3.51
931	951	0.337773	AGGAGATGCAGGAGGAGACA	59.662	55.000	0.00	0.00	0.00	3.41
1292	1318	3.367087	CCAGAAGTCCAGAACGAACGTAT	60.367	47.826	0.00	0.00	0.00	3.06
1298	1327	3.493334	TCTAACCAGAAGTCCAGAACGA	58.507	45.455	0.00	0.00	0.00	3.85
1300	1329	4.508662	CCATCTAACCAGAAGTCCAGAAC	58.491	47.826	0.00	0.00	33.50	3.01
1302	1331	2.501723	GCCATCTAACCAGAAGTCCAGA	59.498	50.000	0.00	0.00	33.50	3.86
1304	1333	1.207089	CGCCATCTAACCAGAAGTCCA	59.793	52.381	0.00	0.00	33.50	4.02
1305	1334	1.480954	TCGCCATCTAACCAGAAGTCC	59.519	52.381	0.00	0.00	33.50	3.85
1306	1335	2.482142	CCTCGCCATCTAACCAGAAGTC	60.482	54.545	0.00	0.00	33.50	3.01
1307	1336	1.482593	CCTCGCCATCTAACCAGAAGT	59.517	52.381	0.00	0.00	33.50	3.01
1308	1337	1.482593	ACCTCGCCATCTAACCAGAAG	59.517	52.381	0.00	0.00	33.50	2.85
1329	1358	0.946221	CGTCGTCTTCTTGGCTGCTT	60.946	55.000	0.00	0.00	0.00	3.91
1352	1381	0.902531	GAGGATCAGTTCCCGGTTCA	59.097	55.000	0.00	0.00	46.81	3.18
1457	2351	1.226603	CGTGCCGCTACAGTCCTAC	60.227	63.158	0.00	0.00	0.00	3.18
1540	2438	0.764890	CTCTCGGCCCCATTCCATAA	59.235	55.000	0.00	0.00	0.00	1.90
1561	2459	0.537188	ACCCGCAGATCAACGAAGAT	59.463	50.000	8.77	0.00	0.00	2.40
1661	2559	1.067071	ACCAAACCCGTTTCGCAAAAA	60.067	42.857	0.00	0.00	0.00	1.94
1663	2561	0.531200	AACCAAACCCGTTTCGCAAA	59.469	45.000	0.00	0.00	0.00	3.68
1666	2564	0.312729	ATGAACCAAACCCGTTTCGC	59.687	50.000	0.00	0.00	0.00	4.70
1668	2566	3.719173	TTGATGAACCAAACCCGTTTC	57.281	42.857	0.00	0.00	0.00	2.78
1669	2567	4.681074	AATTGATGAACCAAACCCGTTT	57.319	36.364	0.00	0.00	0.00	3.60
1670	2568	5.793030	TTAATTGATGAACCAAACCCGTT	57.207	34.783	0.00	0.00	0.00	4.44
1671	2569	5.993748	ATTAATTGATGAACCAAACCCGT	57.006	34.783	0.00	0.00	0.00	5.28
1672	2570	8.247562	TCTTAATTAATTGATGAACCAAACCCG	58.752	33.333	11.05	0.00	0.00	5.28
1725	2624	6.522054	TGTATTGATTTTTGCCCGGTTTTTA	58.478	32.000	0.00	0.00	0.00	1.52
1807	2721	0.459585	TGTATTCGAAGAGTGGCGGC	60.460	55.000	3.35	0.00	38.43	6.53
1810	2724	4.742438	TTTTGTGTATTCGAAGAGTGGC	57.258	40.909	3.35	0.00	38.43	5.01
1811	2725	5.411361	TGGATTTTGTGTATTCGAAGAGTGG	59.589	40.000	3.35	0.00	38.43	4.00
1812	2726	6.480524	TGGATTTTGTGTATTCGAAGAGTG	57.519	37.500	3.35	0.00	38.43	3.51
1960	2876	2.435805	GTCCCTGACTGCTTGATGGATA	59.564	50.000	0.00	0.00	0.00	2.59
2087	3006	2.730382	TGATCGCTAGTGTGGAGGTTA	58.270	47.619	2.66	0.00	0.00	2.85
2105	3024	3.242284	CGCGAAAGAACTTTGTGACTTGA	60.242	43.478	0.00	0.00	32.11	3.02
2156	3081	3.387374	ACCATTGAGCCAAATGTGTTTGA	59.613	39.130	7.86	0.00	46.03	2.69
2192	3117	3.190079	CGACCATCGATCAAGTGATGTT	58.810	45.455	0.00	0.00	43.74	2.71
2275	3200	2.894126	TGCCGGTTCAATTACAAACCAT	59.106	40.909	1.90	0.00	44.25	3.55
2276	3201	2.034812	GTGCCGGTTCAATTACAAACCA	59.965	45.455	1.90	0.00	44.25	3.67
2640	3615	3.697747	CAGGCCCGTACGACCCAA	61.698	66.667	18.76	0.00	0.00	4.12
2747	4611	4.087907	GTGGTGAGGAGACCTTTAGTACT	58.912	47.826	0.00	0.00	36.88	2.73
2906	4880	1.741770	CACTAGTGCAGAACCGGCC	60.742	63.158	10.54	0.00	0.00	6.13
2927	4902	5.550290	ACAAACCAAATGAGGCCTTAAATG	58.450	37.500	6.77	6.32	0.00	2.32
2928	4903	5.823861	ACAAACCAAATGAGGCCTTAAAT	57.176	34.783	6.77	0.00	0.00	1.40
2929	4904	5.245075	CCTACAAACCAAATGAGGCCTTAAA	59.755	40.000	6.77	0.00	0.00	1.52
2930	4905	4.770010	CCTACAAACCAAATGAGGCCTTAA	59.230	41.667	6.77	0.00	0.00	1.85
2931	4906	4.043561	TCCTACAAACCAAATGAGGCCTTA	59.956	41.667	6.77	1.66	0.00	2.69
2932	4907	3.165071	CCTACAAACCAAATGAGGCCTT	58.835	45.455	6.77	0.00	0.00	4.35
2933	4908	2.378547	TCCTACAAACCAAATGAGGCCT	59.621	45.455	3.86	3.86	0.00	5.19
2934	4909	2.802719	TCCTACAAACCAAATGAGGCC	58.197	47.619	0.00	0.00	0.00	5.19
2935	4910	5.405935	AATTCCTACAAACCAAATGAGGC	57.594	39.130	0.00	0.00	0.00	4.70
2961	4936	9.111519	TGCAAATCCTATCCTATACAATTCCTA	57.888	33.333	0.00	0.00	0.00	2.94
2962	4937	7.988937	TGCAAATCCTATCCTATACAATTCCT	58.011	34.615	0.00	0.00	0.00	3.36
2963	4938	8.635765	TTGCAAATCCTATCCTATACAATTCC	57.364	34.615	0.00	0.00	0.00	3.01
2965	4940	9.082313	CCTTTGCAAATCCTATCCTATACAATT	57.918	33.333	13.23	0.00	0.00	2.32
2966	4941	8.448008	TCCTTTGCAAATCCTATCCTATACAAT	58.552	33.333	13.23	0.00	0.00	2.71
2967	4942	7.811282	TCCTTTGCAAATCCTATCCTATACAA	58.189	34.615	13.23	0.00	0.00	2.41
2968	4943	7.387265	TCCTTTGCAAATCCTATCCTATACA	57.613	36.000	13.23	0.00	0.00	2.29
2969	4944	8.691661	TTTCCTTTGCAAATCCTATCCTATAC	57.308	34.615	13.23	0.00	0.00	1.47
2970	4945	9.707957	TTTTTCCTTTGCAAATCCTATCCTATA	57.292	29.630	13.23	0.00	0.00	1.31
2971	4946	8.608185	TTTTTCCTTTGCAAATCCTATCCTAT	57.392	30.769	13.23	0.00	0.00	2.57
2972	4947	8.608185	ATTTTTCCTTTGCAAATCCTATCCTA	57.392	30.769	13.23	0.00	0.00	2.94
2973	4948	6.933514	TTTTTCCTTTGCAAATCCTATCCT	57.066	33.333	13.23	0.00	0.00	3.24
2974	4949	7.280876	GGAATTTTTCCTTTGCAAATCCTATCC	59.719	37.037	13.23	9.41	46.57	2.59
2975	4950	8.201554	GGAATTTTTCCTTTGCAAATCCTATC	57.798	34.615	13.23	4.40	46.57	2.08
2991	4966	7.217200	ACTAAAGGGCTTCAAAGGAATTTTTC	58.783	34.615	0.00	0.00	31.34	2.29
2992	4967	7.136822	ACTAAAGGGCTTCAAAGGAATTTTT	57.863	32.000	0.00	0.00	31.34	1.94
2993	4968	6.747414	ACTAAAGGGCTTCAAAGGAATTTT	57.253	33.333	0.00	0.00	31.34	1.82
2994	4969	6.747414	AACTAAAGGGCTTCAAAGGAATTT	57.253	33.333	0.00	0.00	31.34	1.82
2995	4970	6.099701	ACAAACTAAAGGGCTTCAAAGGAATT	59.900	34.615	0.00	0.00	31.34	2.17
2996	4971	5.602561	ACAAACTAAAGGGCTTCAAAGGAAT	59.397	36.000	0.00	0.00	31.34	3.01
2997	4972	4.959839	ACAAACTAAAGGGCTTCAAAGGAA	59.040	37.500	0.00	0.00	0.00	3.36
2998	4973	4.542697	ACAAACTAAAGGGCTTCAAAGGA	58.457	39.130	0.00	0.00	0.00	3.36
2999	4974	4.937201	ACAAACTAAAGGGCTTCAAAGG	57.063	40.909	0.00	0.00	0.00	3.11
3000	4975	5.768164	TCCTACAAACTAAAGGGCTTCAAAG	59.232	40.000	0.00	0.00	0.00	2.77
3001	4976	5.697067	TCCTACAAACTAAAGGGCTTCAAA	58.303	37.500	0.00	0.00	0.00	2.69
3002	4977	5.313280	TCCTACAAACTAAAGGGCTTCAA	57.687	39.130	0.00	0.00	0.00	2.69
3003	4978	4.986054	TCCTACAAACTAAAGGGCTTCA	57.014	40.909	0.00	0.00	0.00	3.02
3004	4979	5.125578	CCATTCCTACAAACTAAAGGGCTTC	59.874	44.000	0.00	0.00	0.00	3.86
3005	4980	5.016831	CCATTCCTACAAACTAAAGGGCTT	58.983	41.667	0.00	0.00	0.00	4.35
3006	4981	4.291249	TCCATTCCTACAAACTAAAGGGCT	59.709	41.667	0.00	0.00	0.00	5.19
3007	4982	4.595986	TCCATTCCTACAAACTAAAGGGC	58.404	43.478	0.00	0.00	0.00	5.19
3008	4983	7.334844	GAATCCATTCCTACAAACTAAAGGG	57.665	40.000	0.00	0.00	0.00	3.95
3041	5016	9.152327	TGTGAAAGATTGATCTCTATCCTACAT	57.848	33.333	0.00	0.00	35.76	2.29
3042	5017	8.417106	GTGTGAAAGATTGATCTCTATCCTACA	58.583	37.037	0.00	0.00	35.76	2.74
3043	5018	8.637986	AGTGTGAAAGATTGATCTCTATCCTAC	58.362	37.037	0.00	0.00	35.76	3.18
3044	5019	8.774546	AGTGTGAAAGATTGATCTCTATCCTA	57.225	34.615	0.00	0.00	35.76	2.94
3045	5020	7.673641	AGTGTGAAAGATTGATCTCTATCCT	57.326	36.000	0.00	0.00	35.76	3.24
3046	5021	8.729805	AAAGTGTGAAAGATTGATCTCTATCC	57.270	34.615	0.00	0.00	35.76	2.59
3050	5025	9.784531	TTTCTAAAGTGTGAAAGATTGATCTCT	57.215	29.630	0.00	0.00	35.76	3.10
3076	5051	8.691661	TTGAGTCTAGGCTAATGTTTCTTTTT	57.308	30.769	0.00	0.00	0.00	1.94
3077	5052	8.734386	CATTGAGTCTAGGCTAATGTTTCTTTT	58.266	33.333	0.00	0.00	0.00	2.27
3078	5053	8.103305	TCATTGAGTCTAGGCTAATGTTTCTTT	58.897	33.333	18.08	0.00	32.22	2.52
3079	5054	7.624549	TCATTGAGTCTAGGCTAATGTTTCTT	58.375	34.615	18.08	0.00	32.22	2.52
3080	5055	7.187824	TCATTGAGTCTAGGCTAATGTTTCT	57.812	36.000	18.08	0.00	32.22	2.52
3081	5056	7.849804	TTCATTGAGTCTAGGCTAATGTTTC	57.150	36.000	18.08	0.27	32.22	2.78
3082	5057	8.635765	TTTTCATTGAGTCTAGGCTAATGTTT	57.364	30.769	18.08	0.00	32.22	2.83
3083	5058	8.635765	TTTTTCATTGAGTCTAGGCTAATGTT	57.364	30.769	18.08	0.00	32.22	2.71
3107	5082	8.860088	GCCATTTTGGTGTATAGATAGGAATTT	58.140	33.333	0.00	0.00	40.46	1.82
3108	5083	8.004215	TGCCATTTTGGTGTATAGATAGGAATT	58.996	33.333	0.00	0.00	40.46	2.17
3109	5084	7.526041	TGCCATTTTGGTGTATAGATAGGAAT	58.474	34.615	0.00	0.00	40.46	3.01
3110	5085	6.905736	TGCCATTTTGGTGTATAGATAGGAA	58.094	36.000	0.00	0.00	40.46	3.36
3111	5086	6.508030	TGCCATTTTGGTGTATAGATAGGA	57.492	37.500	0.00	0.00	40.46	2.94
3112	5087	7.170965	AGATGCCATTTTGGTGTATAGATAGG	58.829	38.462	0.00	0.00	40.46	2.57
3113	5088	8.099537	AGAGATGCCATTTTGGTGTATAGATAG	58.900	37.037	0.00	0.00	40.46	2.08
3114	5089	7.977818	AGAGATGCCATTTTGGTGTATAGATA	58.022	34.615	0.00	0.00	40.46	1.98
3115	5090	6.845908	AGAGATGCCATTTTGGTGTATAGAT	58.154	36.000	0.00	0.00	40.46	1.98
3116	5091	6.252599	AGAGATGCCATTTTGGTGTATAGA	57.747	37.500	0.00	0.00	40.46	1.98
3117	5092	6.769822	AGAAGAGATGCCATTTTGGTGTATAG	59.230	38.462	0.00	0.00	40.46	1.31
3118	5093	6.662755	AGAAGAGATGCCATTTTGGTGTATA	58.337	36.000	0.00	0.00	40.46	1.47
3119	5094	5.513233	AGAAGAGATGCCATTTTGGTGTAT	58.487	37.500	0.00	0.00	40.46	2.29
3120	5095	4.922206	AGAAGAGATGCCATTTTGGTGTA	58.078	39.130	0.00	0.00	40.46	2.90
3121	5096	3.771216	AGAAGAGATGCCATTTTGGTGT	58.229	40.909	0.00	0.00	40.46	4.16
3122	5097	4.796038	AAGAAGAGATGCCATTTTGGTG	57.204	40.909	0.00	0.00	40.46	4.17
3123	5098	5.813513	AAAAGAAGAGATGCCATTTTGGT	57.186	34.783	0.00	0.00	40.46	3.67
3124	5099	8.906867	TCTATAAAAGAAGAGATGCCATTTTGG	58.093	33.333	0.00	0.00	41.55	3.28
3130	5105	9.685276	TCAATTTCTATAAAAGAAGAGATGCCA	57.315	29.630	0.00	0.00	44.95	4.92
3158	5133	3.928005	AGGAAGTGAGATGACATGCAT	57.072	42.857	0.00	0.00	40.77	3.96
3159	5134	4.406649	TCATAGGAAGTGAGATGACATGCA	59.593	41.667	0.00	0.00	0.00	3.96
3160	5135	4.953667	TCATAGGAAGTGAGATGACATGC	58.046	43.478	0.00	0.00	0.00	4.06
3161	5136	8.343366	CAAAATCATAGGAAGTGAGATGACATG	58.657	37.037	0.00	0.00	31.41	3.21
3162	5137	7.013083	GCAAAATCATAGGAAGTGAGATGACAT	59.987	37.037	0.00	0.00	31.41	3.06
3163	5138	6.317140	GCAAAATCATAGGAAGTGAGATGACA	59.683	38.462	0.00	0.00	31.41	3.58
3164	5139	6.541641	AGCAAAATCATAGGAAGTGAGATGAC	59.458	38.462	0.00	0.00	31.41	3.06
3165	5140	6.656902	AGCAAAATCATAGGAAGTGAGATGA	58.343	36.000	0.00	0.00	33.09	2.92
3166	5141	6.939132	AGCAAAATCATAGGAAGTGAGATG	57.061	37.500	0.00	0.00	0.00	2.90
3167	5142	9.638176	AAATAGCAAAATCATAGGAAGTGAGAT	57.362	29.630	0.00	0.00	0.00	2.75
3168	5143	9.113838	GAAATAGCAAAATCATAGGAAGTGAGA	57.886	33.333	0.00	0.00	0.00	3.27
3169	5144	9.118300	AGAAATAGCAAAATCATAGGAAGTGAG	57.882	33.333	0.00	0.00	0.00	3.51
3191	5166	9.052759	GGAGCACGGATAGAAATTTTATAGAAA	57.947	33.333	0.00	0.00	0.00	2.52
3192	5167	7.384115	CGGAGCACGGATAGAAATTTTATAGAA	59.616	37.037	0.00	0.00	39.42	2.10
3193	5168	6.866770	CGGAGCACGGATAGAAATTTTATAGA	59.133	38.462	0.00	0.00	39.42	1.98
3194	5169	7.050281	CGGAGCACGGATAGAAATTTTATAG	57.950	40.000	0.00	0.00	39.42	1.31
3196	5171	5.924475	CGGAGCACGGATAGAAATTTTAT	57.076	39.130	0.00	0.00	39.42	1.40
3211	5186	2.357517	CTGGGTGTCACGGAGCAC	60.358	66.667	0.00	0.00	35.07	4.40
3212	5187	2.523168	TCTGGGTGTCACGGAGCA	60.523	61.111	0.00	0.00	0.00	4.26
3213	5188	2.262915	CTCTGGGTGTCACGGAGC	59.737	66.667	0.00	0.00	34.84	4.70
3214	5189	2.973899	CCTCTGGGTGTCACGGAG	59.026	66.667	10.41	10.41	40.30	4.63
3215	5190	3.311110	GCCTCTGGGTGTCACGGA	61.311	66.667	0.00	0.00	34.45	4.69
3216	5191	2.959484	ATGCCTCTGGGTGTCACGG	61.959	63.158	0.00	0.00	34.45	4.94
3217	5192	1.742880	CATGCCTCTGGGTGTCACG	60.743	63.158	0.00	0.00	34.45	4.35
3218	5193	2.042831	GCATGCCTCTGGGTGTCAC	61.043	63.158	6.36	0.00	34.45	3.67
3219	5194	0.909133	TAGCATGCCTCTGGGTGTCA	60.909	55.000	15.66	0.00	34.45	3.58
3220	5195	0.179062	CTAGCATGCCTCTGGGTGTC	60.179	60.000	15.66	0.00	34.45	3.67
3221	5196	1.910722	CTAGCATGCCTCTGGGTGT	59.089	57.895	15.66	0.00	34.45	4.16
3222	5197	1.525535	GCTAGCATGCCTCTGGGTG	60.526	63.158	15.66	0.00	34.45	4.61
3223	5198	2.914289	GCTAGCATGCCTCTGGGT	59.086	61.111	15.66	0.00	34.45	4.51
3234	5209	4.435436	CACAGGCGTCGGCTAGCA	62.435	66.667	21.98	0.00	36.44	3.49
3250	5225	2.954684	CGCCTAAGTCCACTGGGCA	61.955	63.158	18.29	0.00	42.13	5.36
3253	5228	1.153549	GCTCGCCTAAGTCCACTGG	60.154	63.158	0.00	0.00	0.00	4.00
3254	5229	1.517257	CGCTCGCCTAAGTCCACTG	60.517	63.158	0.00	0.00	0.00	3.66
3257	5232	1.377366	CTCTCGCTCGCCTAAGTCCA	61.377	60.000	0.00	0.00	0.00	4.02
3258	5233	1.096386	TCTCTCGCTCGCCTAAGTCC	61.096	60.000	0.00	0.00	0.00	3.85
3260	5235	0.107606	TCTCTCTCGCTCGCCTAAGT	60.108	55.000	0.00	0.00	0.00	2.24
3261	5236	1.234821	ATCTCTCTCGCTCGCCTAAG	58.765	55.000	0.00	0.00	0.00	2.18
3262	5237	1.335182	CAATCTCTCTCGCTCGCCTAA	59.665	52.381	0.00	0.00	0.00	2.69
3263	5238	0.947960	CAATCTCTCTCGCTCGCCTA	59.052	55.000	0.00	0.00	0.00	3.93
3264	5239	1.732917	CAATCTCTCTCGCTCGCCT	59.267	57.895	0.00	0.00	0.00	5.52
3265	5240	1.948635	GCAATCTCTCTCGCTCGCC	60.949	63.158	0.00	0.00	0.00	5.54
3266	5241	0.803768	TTGCAATCTCTCTCGCTCGC	60.804	55.000	0.00	0.00	0.00	5.03
3267	5242	0.919981	GTTGCAATCTCTCTCGCTCG	59.080	55.000	0.59	0.00	0.00	5.03
3268	5243	0.919981	CGTTGCAATCTCTCTCGCTC	59.080	55.000	0.59	0.00	0.00	5.03
3269	5244	0.244994	ACGTTGCAATCTCTCTCGCT	59.755	50.000	0.59	0.00	0.00	4.93
3270	5245	0.368227	CACGTTGCAATCTCTCTCGC	59.632	55.000	0.59	0.00	0.00	5.03
3271	5246	0.994995	CCACGTTGCAATCTCTCTCG	59.005	55.000	0.59	1.62	0.00	4.04
3272	5247	2.370281	TCCACGTTGCAATCTCTCTC	57.630	50.000	0.59	0.00	0.00	3.20
3273	5248	2.839486	TTCCACGTTGCAATCTCTCT	57.161	45.000	0.59	0.00	0.00	3.10
3274	5249	3.436704	TGATTTCCACGTTGCAATCTCTC	59.563	43.478	11.99	0.00	0.00	3.20
3278	5253	4.084589	GGTTTTGATTTCCACGTTGCAATC	60.085	41.667	0.59	5.28	0.00	2.67
3279	5254	3.807071	GGTTTTGATTTCCACGTTGCAAT	59.193	39.130	0.59	0.00	0.00	3.56
3280	5255	3.190874	GGTTTTGATTTCCACGTTGCAA	58.809	40.909	0.00	0.00	0.00	4.08
3281	5256	2.482142	GGGTTTTGATTTCCACGTTGCA	60.482	45.455	0.00	0.00	0.00	4.08
3282	5257	2.131972	GGGTTTTGATTTCCACGTTGC	58.868	47.619	0.00	0.00	0.00	4.17
3283	5258	3.726291	AGGGTTTTGATTTCCACGTTG	57.274	42.857	0.00	0.00	0.00	4.10
3284	5259	4.721132	TCTAGGGTTTTGATTTCCACGTT	58.279	39.130	0.00	0.00	0.00	3.99
3285	5260	4.202430	ACTCTAGGGTTTTGATTTCCACGT	60.202	41.667	0.00	0.00	0.00	4.49
3286	5261	4.324267	ACTCTAGGGTTTTGATTTCCACG	58.676	43.478	0.00	0.00	0.00	4.94
3287	5262	6.473758	ACTACTCTAGGGTTTTGATTTCCAC	58.526	40.000	0.00	0.00	0.00	4.02
3288	5263	6.697641	ACTACTCTAGGGTTTTGATTTCCA	57.302	37.500	0.00	0.00	0.00	3.53
3289	5264	7.764901	CAGTACTACTCTAGGGTTTTGATTTCC	59.235	40.741	0.00	0.00	0.00	3.13
3291	5266	7.104290	GCAGTACTACTCTAGGGTTTTGATTT	58.896	38.462	0.00	0.00	0.00	2.17
3292	5267	6.627508	CGCAGTACTACTCTAGGGTTTTGATT	60.628	42.308	0.00	0.00	0.00	2.57
3293	5268	5.163540	CGCAGTACTACTCTAGGGTTTTGAT	60.164	44.000	0.00	0.00	0.00	2.57
3294	5269	4.157289	CGCAGTACTACTCTAGGGTTTTGA	59.843	45.833	0.00	0.00	0.00	2.69
3295	5270	4.157289	TCGCAGTACTACTCTAGGGTTTTG	59.843	45.833	0.00	0.00	0.00	2.44
3296	5271	4.338879	TCGCAGTACTACTCTAGGGTTTT	58.661	43.478	0.00	0.00	0.00	2.43
3297	5272	3.960571	TCGCAGTACTACTCTAGGGTTT	58.039	45.455	0.00	0.00	0.00	3.27
3298	5273	3.641434	TCGCAGTACTACTCTAGGGTT	57.359	47.619	0.00	0.00	0.00	4.11
3299	5274	3.277715	GTTCGCAGTACTACTCTAGGGT	58.722	50.000	0.00	0.00	0.00	4.34
3300	5275	2.617774	GGTTCGCAGTACTACTCTAGGG	59.382	54.545	0.00	0.00	0.00	3.53
3316	5600	3.926527	TGAAGAAATCTCGTGATGGTTCG	59.073	43.478	0.00	0.00	32.44	3.95
3317	5601	4.093556	GGTGAAGAAATCTCGTGATGGTTC	59.906	45.833	0.00	2.64	32.44	3.62
3382	5680	4.965532	AGAAGGCAGTCCTATACAAGTCAT	59.034	41.667	0.00	0.00	43.40	3.06
3383	5681	4.353777	AGAAGGCAGTCCTATACAAGTCA	58.646	43.478	0.00	0.00	43.40	3.41
3384	5682	5.346181	AAGAAGGCAGTCCTATACAAGTC	57.654	43.478	0.00	0.00	43.40	3.01
3397	5695	1.237285	CGGTGGGACAAAGAAGGCAG	61.237	60.000	0.00	0.00	44.16	4.85
3457	5755	1.678627	GCGACCAGAAGAGAGCTGATA	59.321	52.381	0.00	0.00	35.39	2.15
3474	5772	4.697756	CGGGTTTGCTCCCAGCGA	62.698	66.667	11.47	0.00	46.26	4.93
3484	5782	0.250234	TCTCATCCTCTGCGGGTTTG	59.750	55.000	0.00	0.00	0.00	2.93
3550	5901	4.770362	TCCACGAGGCGGATCCCA	62.770	66.667	6.06	0.00	34.51	4.37
3661	6020	6.150976	GGCTAAATATGTATGCATACTGCCAA	59.849	38.462	31.35	15.67	44.23	4.52
3724	6362	3.947196	TGGACCTGTACGTAACGATACAT	59.053	43.478	0.00	0.00	31.10	2.29
3792	6430	7.630082	AGAGTACTTATTTCAATGGCAGGTTA	58.370	34.615	0.00	0.00	0.00	2.85
3793	6431	6.485171	AGAGTACTTATTTCAATGGCAGGTT	58.515	36.000	0.00	0.00	0.00	3.50
3794	6432	6.067217	AGAGTACTTATTTCAATGGCAGGT	57.933	37.500	0.00	0.00	0.00	4.00
3864	6502	2.014128	ACCCTAACAATATGCACGTGC	58.986	47.619	33.11	33.11	42.50	5.34
3868	6506	9.038803	GTTTAGTAGTACCCTAACAATATGCAC	57.961	37.037	0.00	0.00	0.00	4.57
3912	6550	4.089208	TGCGCGCACATTGTAATTAAAAAG	59.911	37.500	33.09	0.00	0.00	2.27
4042	6680	8.311395	TCTGGAAAAATCTAATAGCTGAGAGA	57.689	34.615	0.00	0.00	0.00	3.10
4048	6686	9.692325	ACAAAGATCTGGAAAAATCTAATAGCT	57.308	29.630	0.00	0.00	32.01	3.32
4102	6743	0.527565	GCGTTCCATGTGCCTTGAAT	59.472	50.000	0.00	0.00	0.00	2.57
4261	7124	7.412853	GTGTTTCCTATTCATCTGTGCAATAG	58.587	38.462	0.00	0.00	31.93	1.73
4264	7127	4.154015	CGTGTTTCCTATTCATCTGTGCAA	59.846	41.667	0.00	0.00	0.00	4.08
4267	7130	3.935203	AGCGTGTTTCCTATTCATCTGTG	59.065	43.478	0.00	0.00	0.00	3.66
4275	7138	6.207810	TGGTTTTGATAAGCGTGTTTCCTATT	59.792	34.615	0.00	0.00	0.00	1.73
4286	7149	5.739161	GCATTACTCTTGGTTTTGATAAGCG	59.261	40.000	0.00	0.00	0.00	4.68
4295	7166	4.935352	TTTGCAGCATTACTCTTGGTTT	57.065	36.364	0.00	0.00	0.00	3.27
4296	7167	5.473066	AATTTGCAGCATTACTCTTGGTT	57.527	34.783	0.00	0.00	0.00	3.67
4403	7280	6.204301	CAGTTATTCATAAGGCTCAGACCATG	59.796	42.308	0.00	0.00	0.00	3.66
4422	7563	4.559300	GCTCACCACAATGCAAACAGTTAT	60.559	41.667	0.00	0.00	0.00	1.89
4451	7596	5.925397	CGATAGAATCAACCTCTTCCATCTG	59.075	44.000	0.00	0.00	39.76	2.90
4464	7609	0.318699	CGGCCTCGCGATAGAATCAA	60.319	55.000	10.36	0.00	39.76	2.57
4566	7716	3.141398	TGGTGAATGCTCAGTTCAGTTC	58.859	45.455	0.00	0.00	36.35	3.01
4602	7752	1.203001	AGAAAACTGATCCCCCGCAAA	60.203	47.619	0.00	0.00	0.00	3.68
4603	7753	0.404040	AGAAAACTGATCCCCCGCAA	59.596	50.000	0.00	0.00	0.00	4.85
4604	7754	0.404040	AAGAAAACTGATCCCCCGCA	59.596	50.000	0.00	0.00	0.00	5.69
4605	7755	1.545841	AAAGAAAACTGATCCCCCGC	58.454	50.000	0.00	0.00	0.00	6.13
4606	7756	5.466819	GTTAAAAAGAAAACTGATCCCCCG	58.533	41.667	0.00	0.00	0.00	5.73
4607	7757	5.542635	AGGTTAAAAAGAAAACTGATCCCCC	59.457	40.000	0.00	0.00	0.00	5.40
4608	7758	6.266786	TCAGGTTAAAAAGAAAACTGATCCCC	59.733	38.462	0.00	0.00	43.86	4.81
4609	7759	7.230712	TCTCAGGTTAAAAAGAAAACTGATCCC	59.769	37.037	4.19	0.00	46.61	3.85
4610	7760	8.166422	TCTCAGGTTAAAAAGAAAACTGATCC	57.834	34.615	4.19	0.00	46.61	3.36
4611	7761	9.057089	TCTCTCAGGTTAAAAAGAAAACTGATC	57.943	33.333	4.19	0.00	46.61	2.92
4612	7762	8.980481	TCTCTCAGGTTAAAAAGAAAACTGAT	57.020	30.769	4.19	0.00	46.61	2.90
4613	7763	8.801882	TTCTCTCAGGTTAAAAAGAAAACTGA	57.198	30.769	3.76	3.76	45.91	3.41
4638	7788	9.388506	GCAGCTGAATCATGGTTACTATTATAT	57.611	33.333	20.43	0.00	0.00	0.86
4639	7789	8.374743	TGCAGCTGAATCATGGTTACTATTATA	58.625	33.333	20.43	0.00	0.00	0.98
4640	7790	7.226441	TGCAGCTGAATCATGGTTACTATTAT	58.774	34.615	20.43	0.00	0.00	1.28
4641	7791	6.591001	TGCAGCTGAATCATGGTTACTATTA	58.409	36.000	20.43	0.00	0.00	0.98
4674	7824	1.135139	CGCCATCTCTCCTTCTTCGAA	59.865	52.381	0.00	0.00	0.00	3.71
4755	7905	2.300152	GAGAATGACGATGATGGGGCTA	59.700	50.000	0.00	0.00	0.00	3.93
4818	7968	1.583495	GGAAAAAGGTCGGCGGAAGG	61.583	60.000	7.21	0.00	0.00	3.46
4830	7980	7.338449	TCGATAAAGGGAAATGGTAGGAAAAAG	59.662	37.037	0.00	0.00	0.00	2.27
4831	7981	7.176490	TCGATAAAGGGAAATGGTAGGAAAAA	58.824	34.615	0.00	0.00	0.00	1.94
4846	7996	0.861837	GAGCACGCATCGATAAAGGG	59.138	55.000	0.00	0.00	0.00	3.95
4891	8041	0.660300	CAGTTTCAAACGCGGGAAGC	60.660	55.000	12.47	13.12	43.95	3.86
4892	8042	0.660300	GCAGTTTCAAACGCGGGAAG	60.660	55.000	12.47	0.00	36.23	3.46
4899	8049	1.411394	CCTGCATGCAGTTTCAAACG	58.589	50.000	38.22	21.18	42.15	3.60
4910	8060	0.663688	CTCAGAAGATGCCTGCATGC	59.336	55.000	11.82	11.82	36.70	4.06
4948	8098	3.319198	ACGGGCGGTCTGATTGGT	61.319	61.111	0.00	0.00	0.00	3.67
5023	8195	6.538742	TCAATCAATCTCGGTTGAAATAGACC	59.461	38.462	0.00	0.00	41.09	3.85
5035	8207	6.187125	AGTTCAACAATCAATCAATCTCGG	57.813	37.500	0.00	0.00	0.00	4.63
5103	8275	2.158449	GTCAACAAGCCTTCTGATGTCG	59.842	50.000	0.00	0.00	0.00	4.35
5136	8308	2.905996	ATGTTGAGCCGGGAGCCAA	61.906	57.895	2.18	0.00	45.47	4.52
5257	8434	8.336806	TGTTACAGAAAACACGTAATTCGAATT	58.663	29.630	25.48	25.48	43.23	2.17
5273	8450	4.620589	TTATCACCCGGTGTTACAGAAA	57.379	40.909	17.32	0.00	34.79	2.52
5313	8490	9.982651	GAGGCATAGCGGATTATCTTTATTATA	57.017	33.333	0.00	0.00	0.00	0.98
5316	8658	6.116126	GGAGGCATAGCGGATTATCTTTATT	58.884	40.000	0.00	0.00	0.00	1.40
5319	8661	3.617531	CGGAGGCATAGCGGATTATCTTT	60.618	47.826	0.00	0.00	0.00	2.52
5320	8662	2.093973	CGGAGGCATAGCGGATTATCTT	60.094	50.000	0.00	0.00	0.00	2.40
5321	8663	1.478510	CGGAGGCATAGCGGATTATCT	59.521	52.381	0.00	0.00	0.00	1.98
5322	8664	1.476891	TCGGAGGCATAGCGGATTATC	59.523	52.381	0.00	0.00	0.00	1.75
5329	8671	0.032678	AGTCATTCGGAGGCATAGCG	59.967	55.000	0.00	0.00	0.00	4.26
5337	8679	0.392193	AGCTTGCCAGTCATTCGGAG	60.392	55.000	0.00	0.00	0.00	4.63
5341	8683	2.615912	GACCATAGCTTGCCAGTCATTC	59.384	50.000	0.00	0.00	0.00	2.67
5343	8685	1.561076	TGACCATAGCTTGCCAGTCAT	59.439	47.619	0.00	0.00	29.75	3.06
5388	8730	0.108329	CCTGTTACGCTACCCCACAG	60.108	60.000	0.00	0.00	35.59	3.66
5400	8743	5.354792	TCCGCAAAATAATGTACCCTGTTAC	59.645	40.000	0.00	0.00	0.00	2.50
5421	8764	8.734218	TCTAGGCAAGTAGATTATATAGTCCG	57.266	38.462	1.84	0.00	0.00	4.79
5465	8808	2.564947	AGTCTTAGTCAACTGAGGCCTG	59.435	50.000	12.00	0.00	35.10	4.85
5469	8812	6.097915	TGGTTAAGTCTTAGTCAACTGAGG	57.902	41.667	2.52	0.00	31.27	3.86
5470	8813	7.210873	AGTTGGTTAAGTCTTAGTCAACTGAG	58.789	38.462	25.46	0.00	38.04	3.35
5471	8814	7.069578	AGAGTTGGTTAAGTCTTAGTCAACTGA	59.930	37.037	28.26	7.20	42.55	3.41
5472	8815	7.210873	AGAGTTGGTTAAGTCTTAGTCAACTG	58.789	38.462	28.26	0.00	42.55	3.16
5473	8816	7.362802	AGAGTTGGTTAAGTCTTAGTCAACT	57.637	36.000	25.90	25.90	42.55	3.16
5474	8817	6.645827	GGAGAGTTGGTTAAGTCTTAGTCAAC	59.354	42.308	20.74	20.74	44.59	3.18
5475	8818	6.516194	CGGAGAGTTGGTTAAGTCTTAGTCAA	60.516	42.308	0.00	5.92	44.59	3.18
5476	8819	5.048224	CGGAGAGTTGGTTAAGTCTTAGTCA	60.048	44.000	0.00	0.00	44.59	3.41
5477	8820	5.048154	ACGGAGAGTTGGTTAAGTCTTAGTC	60.048	44.000	0.00	0.00	44.59	2.59
5478	8821	4.831710	ACGGAGAGTTGGTTAAGTCTTAGT	59.168	41.667	0.00	0.00	44.59	2.24
5479	8822	5.048224	TGACGGAGAGTTGGTTAAGTCTTAG	60.048	44.000	0.00	0.00	44.59	2.18
5480	8823	4.828939	TGACGGAGAGTTGGTTAAGTCTTA	59.171	41.667	0.00	0.00	44.59	2.10
5481	8824	3.640029	TGACGGAGAGTTGGTTAAGTCTT	59.360	43.478	0.00	0.00	44.59	3.01
5482	8825	3.228453	TGACGGAGAGTTGGTTAAGTCT	58.772	45.455	0.00	0.00	46.65	3.24
5483	8826	3.655276	TGACGGAGAGTTGGTTAAGTC	57.345	47.619	0.00	0.00	36.66	3.01
5484	8827	3.387050	ACTTGACGGAGAGTTGGTTAAGT	59.613	43.478	0.00	0.00	36.18	2.24
5485	8828	3.741344	CACTTGACGGAGAGTTGGTTAAG	59.259	47.826	0.00	0.00	34.55	1.85
5486	8829	3.385433	TCACTTGACGGAGAGTTGGTTAA	59.615	43.478	0.00	0.00	0.00	2.01
5487	8830	2.960384	TCACTTGACGGAGAGTTGGTTA	59.040	45.455	0.00	0.00	0.00	2.85
5488	8831	1.760613	TCACTTGACGGAGAGTTGGTT	59.239	47.619	0.00	0.00	0.00	3.67
5489	8832	1.410004	TCACTTGACGGAGAGTTGGT	58.590	50.000	0.00	0.00	0.00	3.67
5490	8833	2.751166	ATCACTTGACGGAGAGTTGG	57.249	50.000	0.00	0.00	0.00	3.77
5491	8834	6.330278	TGTTATATCACTTGACGGAGAGTTG	58.670	40.000	0.00	0.00	0.00	3.16
5492	8835	6.525578	TGTTATATCACTTGACGGAGAGTT	57.474	37.500	0.00	0.00	0.00	3.01
5493	8836	6.096987	ACATGTTATATCACTTGACGGAGAGT	59.903	38.462	9.27	0.00	0.00	3.24
5494	8837	6.507900	ACATGTTATATCACTTGACGGAGAG	58.492	40.000	9.27	0.00	0.00	3.20
5531	8879	6.974965	TGTGCCAAAATTTGTTTTGAGTTTT	58.025	28.000	13.51	0.00	42.79	2.43
5537	8888	7.249147	TGAGATTTGTGCCAAAATTTGTTTTG	58.751	30.769	4.92	6.65	40.57	2.44
5542	8893	6.961576	ACATTGAGATTTGTGCCAAAATTTG	58.038	32.000	0.00	0.00	29.89	2.32
5546	8897	8.674263	ATTTTACATTGAGATTTGTGCCAAAA	57.326	26.923	4.76	0.00	0.00	2.44
5550	8901	7.274250	GTGAGATTTTACATTGAGATTTGTGCC	59.726	37.037	0.00	0.00	0.00	5.01
5569	8920	6.072452	TGAGTCGATGCTATATTCGTGAGATT	60.072	38.462	0.00	0.00	41.60	2.40
5577	8928	5.037015	ACGTCTGAGTCGATGCTATATTC	57.963	43.478	6.05	0.00	0.00	1.75
5589	8940	3.252701	TGAGACTTGGTTACGTCTGAGTC	59.747	47.826	0.00	0.07	40.37	3.36
5593	8944	3.566523	GACTGAGACTTGGTTACGTCTG	58.433	50.000	0.00	0.00	40.37	3.51
5596	8947	2.031333	GTCGACTGAGACTTGGTTACGT	60.031	50.000	8.70	0.00	38.09	3.57
5614	8965	4.489810	ACAGTCTTGCTAAATCTCAGTCG	58.510	43.478	0.00	0.00	0.00	4.18
5662	9013	4.475919	AATAATCTGCAATAAGCCCCCT	57.524	40.909	0.00	0.00	44.83	4.79
5703	9058	7.281549	ACGGGTAAATAACATGTTGGATAACTC	59.718	37.037	21.42	11.09	37.68	3.01
5705	9060	7.066043	TGACGGGTAAATAACATGTTGGATAAC	59.934	37.037	21.42	12.41	37.32	1.89
5728	9086	7.201548	GGTTTCAAATATTGTGATGGCATTGAC	60.202	37.037	0.00	2.38	0.00	3.18
5754	9112	1.134367	TGTCGAGCGGAACAAGATAGG	59.866	52.381	0.00	0.00	0.00	2.57
5763	9121	1.443702	CGTCACATGTCGAGCGGAA	60.444	57.895	0.00	0.00	0.00	4.30
5766	9124	3.545481	GGCGTCACATGTCGAGCG	61.545	66.667	10.81	11.38	0.00	5.03
5769	9127	0.739462	GAATGGGCGTCACATGTCGA	60.739	55.000	10.81	2.84	0.00	4.20
5774	9132	0.327924	TGGAAGAATGGGCGTCACAT	59.672	50.000	0.00	0.00	0.00	3.21
5777	9135	0.617935	TGATGGAAGAATGGGCGTCA	59.382	50.000	0.00	0.00	0.00	4.35
5801	9159	3.198853	AGAACAGGGAGATTTAGTGGAGC	59.801	47.826	0.00	0.00	0.00	4.70
5811	9169	2.569404	GGTGAAGTGAGAACAGGGAGAT	59.431	50.000	0.00	0.00	0.00	2.75
5816	9174	2.638480	TTGGGTGAAGTGAGAACAGG	57.362	50.000	0.00	0.00	0.00	4.00
5817	9175	3.503748	GGATTTGGGTGAAGTGAGAACAG	59.496	47.826	0.00	0.00	0.00	3.16
5838	9196	2.286365	TTTGCACTAGGGTTTGGAGG	57.714	50.000	0.00	0.00	0.00	4.30
5839	9197	3.119849	CGATTTTGCACTAGGGTTTGGAG	60.120	47.826	0.00	0.00	0.00	3.86
5860	9218	2.569183	GGATCTCCGGATCTACCCG	58.431	63.158	3.57	0.00	45.53	5.28
5883	9241	7.486407	AGCCAAACAATTCCAATAGAAGAAT	57.514	32.000	0.00	0.00	38.07	2.40
5939	9297	2.768022	ATGGGCCTCGGGGATTTCC	61.768	63.158	4.80	0.10	33.58	3.13
5940	9298	1.529244	CATGGGCCTCGGGGATTTC	60.529	63.158	4.80	0.00	33.58	2.17
5972	9330	7.172532	TCACAATACACAACAAGTTATGGAGAC	59.827	37.037	0.00	0.00	0.00	3.36
5991	9349	2.523245	TGCAAACAGGGCATCACAATA	58.477	42.857	0.00	0.00	36.11	1.90
6079	9438	3.992943	ATATCACCCCGTGAGTTTGAA	57.007	42.857	0.55	0.00	46.04	2.69
6116	9475	3.688414	GCCATAACTTGCCTATTCACCCT	60.688	47.826	0.00	0.00	0.00	4.34
6132	9491	6.596309	TGATGTAAACAAACATGGCCATAA	57.404	33.333	20.30	0.00	40.17	1.90
6161	9520	0.111061	TCTGCCTTGTTGTCTGCCAT	59.889	50.000	0.00	0.00	0.00	4.40
6165	9524	3.996150	AACAATCTGCCTTGTTGTCTG	57.004	42.857	7.97	0.00	45.21	3.51
6168	9527	4.470334	ACAAAACAATCTGCCTTGTTGT	57.530	36.364	9.15	2.69	45.98	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.