Multiple sequence alignment - TraesCS3B01G312100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G312100 chr3B 100.000 6619 0 0 1 6619 501397322 501390704 0.000000e+00 12224.0
1 TraesCS3B01G312100 chr3B 91.203 898 66 7 1796 2691 8469306 8470192 0.000000e+00 1208.0
2 TraesCS3B01G312100 chr3B 90.323 186 16 2 11 194 592334677 592334862 6.630000e-60 243.0
3 TraesCS3B01G312100 chr3B 93.103 87 6 0 2729 2815 8470191 8470277 1.940000e-25 128.0
4 TraesCS3B01G312100 chr3A 94.981 4961 187 28 653 5582 507474608 507469679 0.000000e+00 7725.0
5 TraesCS3B01G312100 chr3A 88.944 1013 63 24 5625 6619 507469677 507468696 0.000000e+00 1205.0
6 TraesCS3B01G312100 chr3A 81.046 306 47 8 193 497 61476735 61476440 3.990000e-57 233.0
7 TraesCS3B01G312100 chr3A 82.967 182 10 7 475 635 507474774 507474593 1.920000e-30 145.0
8 TraesCS3B01G312100 chr3D 95.451 2814 95 17 2815 5623 385430869 385428084 0.000000e+00 4457.0
9 TraesCS3B01G312100 chr3D 92.481 1157 59 17 653 1794 385432004 385430861 0.000000e+00 1629.0
10 TraesCS3B01G312100 chr3D 92.196 897 59 5 1796 2691 6814623 6815509 0.000000e+00 1258.0
11 TraesCS3B01G312100 chr3D 88.320 899 54 29 5739 6619 385428011 385427146 0.000000e+00 1031.0
12 TraesCS3B01G312100 chr3D 91.236 445 33 5 193 635 385432429 385431989 9.500000e-168 601.0
13 TraesCS3B01G312100 chr3D 81.935 310 44 9 193 500 606572570 606572869 1.100000e-62 252.0
14 TraesCS3B01G312100 chr4B 88.450 1013 116 1 1802 2814 23693373 23692362 0.000000e+00 1221.0
15 TraesCS3B01G312100 chr4B 81.311 305 49 6 193 497 577027588 577027292 2.390000e-59 241.0
16 TraesCS3B01G312100 chr6D 87.109 1024 127 3 1794 2815 42403833 42404853 0.000000e+00 1155.0
17 TraesCS3B01G312100 chrUn 85.953 1018 143 0 1798 2815 88263469 88262452 0.000000e+00 1088.0
18 TraesCS3B01G312100 chrUn 85.841 1017 144 0 1799 2815 88309298 88308282 0.000000e+00 1081.0
19 TraesCS3B01G312100 chr5A 87.005 985 93 9 1796 2772 12187508 12186551 0.000000e+00 1077.0
20 TraesCS3B01G312100 chr5B 83.861 316 42 7 194 507 6576994 6576686 6.490000e-75 292.0
21 TraesCS3B01G312100 chr5B 92.228 193 14 1 2 193 676167716 676167524 8.460000e-69 272.0
22 TraesCS3B01G312100 chr5B 89.899 198 18 2 1 196 687450062 687449865 3.060000e-63 254.0
23 TraesCS3B01G312100 chr4D 91.892 185 13 2 11 193 66507731 66507915 2.370000e-64 257.0
24 TraesCS3B01G312100 chr4D 91.837 49 2 2 5645 5691 470438812 470438764 4.280000e-07 67.6
25 TraesCS3B01G312100 chr1B 90.769 195 15 3 1 193 296292499 296292692 2.370000e-64 257.0
26 TraesCS3B01G312100 chr1B 89.340 197 19 2 1 195 25582924 25582728 5.130000e-61 246.0
27 TraesCS3B01G312100 chr1B 85.714 70 3 6 5623 5685 645348103 645348172 4.280000e-07 67.6
28 TraesCS3B01G312100 chr2B 81.562 320 49 7 194 509 157271216 157270903 8.520000e-64 255.0
29 TraesCS3B01G312100 chr2B 81.373 306 51 4 193 497 23969669 23969369 1.840000e-60 244.0
30 TraesCS3B01G312100 chr2D 90.909 187 13 3 1 185 525937959 525937775 1.430000e-61 248.0
31 TraesCS3B01G312100 chr2D 90.374 187 17 1 11 196 57331913 57332099 1.840000e-60 244.0
32 TraesCS3B01G312100 chr2D 86.667 60 4 3 5645 5701 589510010 589510068 5.540000e-06 63.9
33 TraesCS3B01G312100 chr2A 88.119 202 22 2 1 200 160013757 160013958 8.580000e-59 239.0
34 TraesCS3B01G312100 chr5D 80.782 307 53 5 193 498 447190550 447190249 1.110000e-57 235.0
35 TraesCS3B01G312100 chr5D 93.478 46 2 1 5631 5675 546906141 546906186 4.280000e-07 67.6
36 TraesCS3B01G312100 chr1D 81.107 307 42 12 193 498 223365192 223365483 1.440000e-56 231.0
37 TraesCS3B01G312100 chr7D 90.323 62 5 1 5629 5689 123053389 123053450 5.500000e-11 80.5
38 TraesCS3B01G312100 chr7B 97.436 39 1 0 5646 5684 105006109 105006147 4.280000e-07 67.6
39 TraesCS3B01G312100 chr7B 93.333 45 2 1 5643 5686 106282304 106282348 1.540000e-06 65.8
40 TraesCS3B01G312100 chr4A 95.122 41 1 1 5645 5684 512025881 512025921 5.540000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G312100 chr3B 501390704 501397322 6618 True 12224.0 12224 100.000 1 6619 1 chr3B.!!$R1 6618
1 TraesCS3B01G312100 chr3B 8469306 8470277 971 False 668.0 1208 92.153 1796 2815 2 chr3B.!!$F2 1019
2 TraesCS3B01G312100 chr3A 507468696 507474774 6078 True 3025.0 7725 88.964 475 6619 3 chr3A.!!$R2 6144
3 TraesCS3B01G312100 chr3D 385427146 385432429 5283 True 1929.5 4457 91.872 193 6619 4 chr3D.!!$R1 6426
4 TraesCS3B01G312100 chr3D 6814623 6815509 886 False 1258.0 1258 92.196 1796 2691 1 chr3D.!!$F1 895
5 TraesCS3B01G312100 chr4B 23692362 23693373 1011 True 1221.0 1221 88.450 1802 2814 1 chr4B.!!$R1 1012
6 TraesCS3B01G312100 chr6D 42403833 42404853 1020 False 1155.0 1155 87.109 1794 2815 1 chr6D.!!$F1 1021
7 TraesCS3B01G312100 chrUn 88262452 88263469 1017 True 1088.0 1088 85.953 1798 2815 1 chrUn.!!$R1 1017
8 TraesCS3B01G312100 chrUn 88308282 88309298 1016 True 1081.0 1081 85.841 1799 2815 1 chrUn.!!$R2 1016
9 TraesCS3B01G312100 chr5A 12186551 12187508 957 True 1077.0 1077 87.005 1796 2772 1 chr5A.!!$R1 976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.032815 AAACGTCCATTTTTGCGGGG 59.967 50.000 0.00 0.0 0.00 5.73 F
257 258 0.040204 CCAAGTCCAGGGCCAAAGAT 59.960 55.000 6.18 0.0 0.00 2.40 F
1209 1237 0.165944 CGAACGCTGTTGTCCCATTC 59.834 55.000 0.00 0.0 0.00 2.67 F
2695 2755 0.103208 CGGTGCTCATCCTCAGTACC 59.897 60.000 0.00 0.0 41.83 3.34 F
2726 2786 0.319555 TGCTACAAGTGCCGTCTGTC 60.320 55.000 0.00 0.0 0.00 3.51 F
2727 2787 0.319555 GCTACAAGTGCCGTCTGTCA 60.320 55.000 0.00 0.0 0.00 3.58 F
2729 2789 0.747852 TACAAGTGCCGTCTGTCACA 59.252 50.000 0.00 0.0 35.76 3.58 F
3066 3165 1.536662 AGGACCTGCGGAACCTTCT 60.537 57.895 0.00 0.0 31.99 2.85 F
5081 5183 0.445436 GTGACTCAGCTTCATTGGCG 59.555 55.000 0.00 0.0 34.52 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1260 1288 0.252330 TCGATCCAACCCACCCACTA 60.252 55.000 0.00 0.00 0.00 2.74 R
1309 1344 0.595095 GCAAGAACAGGTTCAGCAGG 59.405 55.000 18.47 5.11 41.84 4.85 R
2714 2774 0.032678 CTCTTGTGACAGACGGCACT 59.967 55.000 0.00 0.00 36.05 4.40 R
4001 4100 2.094700 CCTGTACTGCTTAAGACAGCGA 60.095 50.000 20.11 10.49 43.37 4.93 R
4316 4415 2.436646 CGCCGTGCTTCCCATTCT 60.437 61.111 0.00 0.00 0.00 2.40 R
4764 4866 4.562082 TCTTCAAAGCCATGCAGAAATTG 58.438 39.130 0.00 0.00 0.00 2.32 R
4863 4965 1.742146 CAGTAGCTGAGCCGCCATA 59.258 57.895 0.00 0.00 32.44 2.74 R
5150 5252 2.559668 ACCATGTTCCATTTCAGCAGTG 59.440 45.455 0.00 0.00 0.00 3.66 R
5899 6015 0.743701 GACTCTGACTCGGCCGTCTA 60.744 60.000 27.15 4.62 35.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.064324 GGAGCGGGTGCAGCAAAT 61.064 61.111 19.06 1.58 46.23 2.32
36 37 1.748879 GGAGCGGGTGCAGCAAATA 60.749 57.895 19.06 0.00 46.23 1.40
37 38 1.312371 GGAGCGGGTGCAGCAAATAA 61.312 55.000 19.06 0.00 46.23 1.40
38 39 0.099436 GAGCGGGTGCAGCAAATAAG 59.901 55.000 19.06 2.58 46.23 1.73
39 40 1.517039 GCGGGTGCAGCAAATAAGC 60.517 57.895 19.06 8.84 42.15 3.09
40 41 1.226379 CGGGTGCAGCAAATAAGCG 60.226 57.895 19.06 6.15 40.15 4.68
41 42 1.139520 GGGTGCAGCAAATAAGCGG 59.860 57.895 19.06 0.00 40.15 5.52
44 45 2.951227 GCAGCAAATAAGCGGCGC 60.951 61.111 26.86 26.86 45.03 6.53
45 46 2.648724 CAGCAAATAAGCGGCGCG 60.649 61.111 27.59 12.27 40.15 6.86
46 47 2.817834 AGCAAATAAGCGGCGCGA 60.818 55.556 27.59 19.26 40.15 5.87
47 48 2.351210 GCAAATAAGCGGCGCGAG 60.351 61.111 27.59 14.27 0.00 5.03
48 49 2.808958 GCAAATAAGCGGCGCGAGA 61.809 57.895 27.59 16.06 0.00 4.04
49 50 1.934463 CAAATAAGCGGCGCGAGAT 59.066 52.632 27.59 17.69 0.00 2.75
50 51 0.304705 CAAATAAGCGGCGCGAGATT 59.695 50.000 27.59 22.28 0.00 2.40
51 52 0.304705 AAATAAGCGGCGCGAGATTG 59.695 50.000 27.59 0.00 0.00 2.67
52 53 2.105960 AATAAGCGGCGCGAGATTGC 62.106 55.000 27.59 5.20 0.00 3.56
60 61 2.202479 GCGAGATTGCGTTTGGCC 60.202 61.111 0.00 0.00 42.61 5.36
61 62 2.098298 CGAGATTGCGTTTGGCCG 59.902 61.111 0.00 0.00 42.61 6.13
62 63 2.485122 GAGATTGCGTTTGGCCGG 59.515 61.111 0.00 0.00 42.61 6.13
63 64 3.683587 GAGATTGCGTTTGGCCGGC 62.684 63.158 21.18 21.18 42.61 6.13
77 78 2.885644 CGGCGCGCTGAACTACAT 60.886 61.111 35.90 0.00 0.00 2.29
78 79 1.587876 CGGCGCGCTGAACTACATA 60.588 57.895 35.90 0.00 0.00 2.29
79 80 0.939577 CGGCGCGCTGAACTACATAT 60.940 55.000 35.90 0.00 0.00 1.78
80 81 0.508641 GGCGCGCTGAACTACATATG 59.491 55.000 32.29 0.00 0.00 1.78
81 82 0.111089 GCGCGCTGAACTACATATGC 60.111 55.000 26.67 0.00 0.00 3.14
82 83 0.508641 CGCGCTGAACTACATATGCC 59.491 55.000 5.56 0.00 0.00 4.40
83 84 0.508641 GCGCTGAACTACATATGCCG 59.491 55.000 0.00 0.00 0.00 5.69
84 85 0.508641 CGCTGAACTACATATGCCGC 59.491 55.000 1.58 0.00 0.00 6.53
85 86 1.581934 GCTGAACTACATATGCCGCA 58.418 50.000 1.58 0.00 0.00 5.69
86 87 1.261619 GCTGAACTACATATGCCGCAC 59.738 52.381 1.58 0.00 0.00 5.34
87 88 1.522676 CTGAACTACATATGCCGCACG 59.477 52.381 1.58 0.00 0.00 5.34
88 89 0.232303 GAACTACATATGCCGCACGC 59.768 55.000 1.58 0.00 38.31 5.34
89 90 1.487452 AACTACATATGCCGCACGCG 61.487 55.000 3.53 3.53 42.08 6.01
90 91 3.281751 CTACATATGCCGCACGCGC 62.282 63.158 5.73 0.00 42.08 6.86
91 92 3.783478 TACATATGCCGCACGCGCT 62.783 57.895 5.73 0.00 42.08 5.92
92 93 4.654904 CATATGCCGCACGCGCTG 62.655 66.667 5.73 5.02 42.08 5.18
98 99 3.385999 CCGCACGCGCTGTTTTTG 61.386 61.111 5.73 0.00 38.24 2.44
99 100 3.385999 CGCACGCGCTGTTTTTGG 61.386 61.111 5.73 0.00 35.30 3.28
100 101 3.691356 GCACGCGCTGTTTTTGGC 61.691 61.111 5.73 0.96 34.30 4.52
107 108 3.977244 CTGTTTTTGGCGCCCGCT 61.977 61.111 26.77 0.00 41.60 5.52
108 109 4.277593 TGTTTTTGGCGCCCGCTG 62.278 61.111 26.77 0.00 41.60 5.18
117 118 4.451150 CGCCCGCTGGAGCAACTA 62.451 66.667 0.00 0.00 42.21 2.24
118 119 2.190578 GCCCGCTGGAGCAACTAT 59.809 61.111 0.00 0.00 42.21 2.12
119 120 1.445942 GCCCGCTGGAGCAACTATA 59.554 57.895 0.00 0.00 42.21 1.31
120 121 0.880718 GCCCGCTGGAGCAACTATAC 60.881 60.000 0.00 0.00 42.21 1.47
121 122 0.249911 CCCGCTGGAGCAACTATACC 60.250 60.000 0.00 0.00 42.21 2.73
122 123 0.597637 CCGCTGGAGCAACTATACCG 60.598 60.000 0.00 0.00 42.21 4.02
123 124 0.597637 CGCTGGAGCAACTATACCGG 60.598 60.000 0.00 0.00 42.21 5.28
124 125 0.880718 GCTGGAGCAACTATACCGGC 60.881 60.000 0.00 0.00 45.37 6.13
125 126 0.753262 CTGGAGCAACTATACCGGCT 59.247 55.000 0.00 0.00 39.75 5.52
126 127 0.464036 TGGAGCAACTATACCGGCTG 59.536 55.000 0.00 0.00 36.59 4.85
127 128 0.880718 GGAGCAACTATACCGGCTGC 60.881 60.000 0.00 0.80 36.59 5.25
128 129 1.215655 GAGCAACTATACCGGCTGCG 61.216 60.000 0.00 0.00 38.07 5.18
129 130 2.882366 GCAACTATACCGGCTGCGC 61.882 63.158 0.00 0.00 0.00 6.09
130 131 2.279252 AACTATACCGGCTGCGCG 60.279 61.111 0.00 0.00 0.00 6.86
131 132 4.944372 ACTATACCGGCTGCGCGC 62.944 66.667 27.26 27.26 38.13 6.86
146 147 3.769358 CGCGCGCTAAAACGTCCA 61.769 61.111 30.48 0.00 34.88 4.02
147 148 2.782615 GCGCGCTAAAACGTCCAT 59.217 55.556 26.67 0.00 34.88 3.41
148 149 1.133869 GCGCGCTAAAACGTCCATT 59.866 52.632 26.67 0.00 34.88 3.16
149 150 0.453782 GCGCGCTAAAACGTCCATTT 60.454 50.000 26.67 0.00 34.88 2.32
150 151 1.958417 CGCGCTAAAACGTCCATTTT 58.042 45.000 5.56 0.00 35.89 1.82
151 152 2.312348 CGCGCTAAAACGTCCATTTTT 58.688 42.857 5.56 0.00 33.80 1.94
152 153 2.088360 CGCGCTAAAACGTCCATTTTTG 59.912 45.455 5.56 0.00 33.80 2.44
153 154 2.160026 GCGCTAAAACGTCCATTTTTGC 60.160 45.455 0.00 6.75 42.86 3.68
154 155 3.681424 GCTAAAACGTCCATTTTTGCG 57.319 42.857 0.00 0.00 39.35 4.85
155 156 2.407026 GCTAAAACGTCCATTTTTGCGG 59.593 45.455 0.00 0.00 39.35 5.69
156 157 1.859383 AAAACGTCCATTTTTGCGGG 58.141 45.000 0.00 0.00 0.00 6.13
157 158 0.032815 AAACGTCCATTTTTGCGGGG 59.967 50.000 0.00 0.00 0.00 5.73
158 159 2.126110 CGTCCATTTTTGCGGGGC 60.126 61.111 0.00 0.00 0.00 5.80
159 160 2.126110 GTCCATTTTTGCGGGGCG 60.126 61.111 0.00 0.00 0.00 6.13
160 161 3.377759 TCCATTTTTGCGGGGCGG 61.378 61.111 0.00 0.00 0.00 6.13
179 180 2.778679 GCTAGTTTGGCGCGACTG 59.221 61.111 15.80 2.37 0.00 3.51
180 181 2.027625 GCTAGTTTGGCGCGACTGT 61.028 57.895 15.80 0.00 0.00 3.55
181 182 1.566018 GCTAGTTTGGCGCGACTGTT 61.566 55.000 15.80 0.00 0.00 3.16
182 183 0.163788 CTAGTTTGGCGCGACTGTTG 59.836 55.000 15.80 0.00 0.00 3.33
183 184 1.225376 TAGTTTGGCGCGACTGTTGG 61.225 55.000 15.80 0.00 0.00 3.77
184 185 2.203084 TTTGGCGCGACTGTTGGA 60.203 55.556 15.80 0.00 0.00 3.53
185 186 2.250939 TTTGGCGCGACTGTTGGAG 61.251 57.895 15.80 0.00 0.00 3.86
186 187 2.652382 TTTGGCGCGACTGTTGGAGA 62.652 55.000 15.80 0.00 0.00 3.71
187 188 2.125512 GGCGCGACTGTTGGAGAT 60.126 61.111 12.10 0.00 0.00 2.75
188 189 2.456119 GGCGCGACTGTTGGAGATG 61.456 63.158 12.10 0.00 0.00 2.90
189 190 1.738099 GCGCGACTGTTGGAGATGT 60.738 57.895 12.10 0.00 0.00 3.06
190 191 1.291877 GCGCGACTGTTGGAGATGTT 61.292 55.000 12.10 0.00 0.00 2.71
191 192 0.716108 CGCGACTGTTGGAGATGTTC 59.284 55.000 0.00 0.00 0.00 3.18
255 256 0.895559 GACCAAGTCCAGGGCCAAAG 60.896 60.000 6.18 0.00 0.00 2.77
257 258 0.040204 CCAAGTCCAGGGCCAAAGAT 59.960 55.000 6.18 0.00 0.00 2.40
260 261 3.217626 CAAGTCCAGGGCCAAAGATATC 58.782 50.000 6.18 0.00 0.00 1.63
261 262 2.492025 AGTCCAGGGCCAAAGATATCA 58.508 47.619 6.18 0.00 0.00 2.15
271 272 4.437390 GGCCAAAGATATCAACGTTCACAG 60.437 45.833 5.32 0.00 0.00 3.66
464 466 3.024547 TGAAAATCCCCAACAACACGAA 58.975 40.909 0.00 0.00 0.00 3.85
472 474 2.751913 AACAACACGAACGGCGCAA 61.752 52.632 10.83 0.00 46.04 4.85
621 645 3.452627 TGGCTATTCCTCTCCTTCTCAAC 59.547 47.826 0.00 0.00 35.26 3.18
622 646 3.452627 GGCTATTCCTCTCCTTCTCAACA 59.547 47.826 0.00 0.00 0.00 3.33
623 647 4.080863 GGCTATTCCTCTCCTTCTCAACAA 60.081 45.833 0.00 0.00 0.00 2.83
624 648 5.115480 GCTATTCCTCTCCTTCTCAACAAG 58.885 45.833 0.00 0.00 0.00 3.16
625 649 5.337975 GCTATTCCTCTCCTTCTCAACAAGT 60.338 44.000 0.00 0.00 0.00 3.16
626 650 6.127310 GCTATTCCTCTCCTTCTCAACAAGTA 60.127 42.308 0.00 0.00 0.00 2.24
627 651 6.688073 ATTCCTCTCCTTCTCAACAAGTAA 57.312 37.500 0.00 0.00 0.00 2.24
628 652 6.688073 TTCCTCTCCTTCTCAACAAGTAAT 57.312 37.500 0.00 0.00 0.00 1.89
629 653 6.042638 TCCTCTCCTTCTCAACAAGTAATG 57.957 41.667 0.00 0.00 0.00 1.90
630 654 5.780282 TCCTCTCCTTCTCAACAAGTAATGA 59.220 40.000 0.00 0.00 0.00 2.57
631 655 5.872070 CCTCTCCTTCTCAACAAGTAATGAC 59.128 44.000 0.00 0.00 0.00 3.06
632 656 6.295575 CCTCTCCTTCTCAACAAGTAATGACT 60.296 42.308 0.00 0.00 37.59 3.41
634 658 7.509546 TCTCCTTCTCAACAAGTAATGACTTT 58.490 34.615 0.00 0.00 43.70 2.66
635 659 7.993183 TCTCCTTCTCAACAAGTAATGACTTTT 59.007 33.333 0.00 0.00 43.70 2.27
636 660 8.154649 TCCTTCTCAACAAGTAATGACTTTTC 57.845 34.615 0.00 0.00 43.70 2.29
637 661 7.228706 TCCTTCTCAACAAGTAATGACTTTTCC 59.771 37.037 0.00 0.00 43.70 3.13
638 662 6.877611 TCTCAACAAGTAATGACTTTTCCC 57.122 37.500 0.00 0.00 43.70 3.97
639 663 6.601332 TCTCAACAAGTAATGACTTTTCCCT 58.399 36.000 0.00 0.00 43.70 4.20
640 664 7.741785 TCTCAACAAGTAATGACTTTTCCCTA 58.258 34.615 0.00 0.00 43.70 3.53
641 665 8.215050 TCTCAACAAGTAATGACTTTTCCCTAA 58.785 33.333 0.00 0.00 43.70 2.69
642 666 8.754991 TCAACAAGTAATGACTTTTCCCTAAA 57.245 30.769 0.00 0.00 43.70 1.85
643 667 9.191479 TCAACAAGTAATGACTTTTCCCTAAAA 57.809 29.630 0.00 0.00 43.70 1.52
644 668 9.810545 CAACAAGTAATGACTTTTCCCTAAAAA 57.189 29.630 0.00 0.00 43.70 1.94
749 776 4.214119 CGCCAGGAAGATATATTGGTTGTG 59.786 45.833 0.00 0.00 0.00 3.33
761 788 0.466555 TGGTTGTGCACCCCTAACAC 60.467 55.000 15.69 6.81 46.68 3.32
774 801 6.295067 GCACCCCTAACACTAACAATTTCATT 60.295 38.462 0.00 0.00 0.00 2.57
842 869 9.121658 GGGTTGGTTTGTTTATTTTGGAAATAA 57.878 29.630 2.60 2.60 0.00 1.40
843 870 9.938670 GGTTGGTTTGTTTATTTTGGAAATAAC 57.061 29.630 5.58 3.50 0.00 1.89
912 939 2.035442 GTCTGTTTGGGCTCGGCTC 61.035 63.158 0.00 0.00 0.00 4.70
1192 1220 2.043349 TCCCTTGGATCTCGGCGA 60.043 61.111 10.14 10.14 0.00 5.54
1209 1237 0.165944 CGAACGCTGTTGTCCCATTC 59.834 55.000 0.00 0.00 0.00 2.67
1214 1242 0.242017 GCTGTTGTCCCATTCTGTGC 59.758 55.000 0.00 0.00 0.00 4.57
1224 1252 1.078848 ATTCTGTGCGCTCTGGTCC 60.079 57.895 9.73 0.00 0.00 4.46
1267 1295 1.668826 TTGAGCAAGGGATAGTGGGT 58.331 50.000 0.00 0.00 0.00 4.51
1268 1296 0.911769 TGAGCAAGGGATAGTGGGTG 59.088 55.000 0.00 0.00 0.00 4.61
1269 1297 0.181350 GAGCAAGGGATAGTGGGTGG 59.819 60.000 0.00 0.00 0.00 4.61
1271 1299 1.571773 GCAAGGGATAGTGGGTGGGT 61.572 60.000 0.00 0.00 0.00 4.51
1273 1301 0.999712 AAGGGATAGTGGGTGGGTTG 59.000 55.000 0.00 0.00 0.00 3.77
1274 1302 0.919289 AGGGATAGTGGGTGGGTTGG 60.919 60.000 0.00 0.00 0.00 3.77
1275 1303 0.917333 GGGATAGTGGGTGGGTTGGA 60.917 60.000 0.00 0.00 0.00 3.53
1276 1304 1.222567 GGATAGTGGGTGGGTTGGAT 58.777 55.000 0.00 0.00 0.00 3.41
1277 1305 1.143073 GGATAGTGGGTGGGTTGGATC 59.857 57.143 0.00 0.00 0.00 3.36
1307 1342 0.546598 GGGGCAGTGGCACTACTATT 59.453 55.000 21.59 0.00 45.12 1.73
1309 1344 2.289565 GGGCAGTGGCACTACTATTTC 58.710 52.381 21.59 0.98 41.45 2.17
1313 1348 2.939103 CAGTGGCACTACTATTTCCTGC 59.061 50.000 21.59 0.00 0.00 4.85
1328 1363 0.595095 CCTGCTGAACCTGTTCTTGC 59.405 55.000 11.03 13.96 40.14 4.01
1356 1401 3.753272 CCTATAGGCGGATGTTTCAATGG 59.247 47.826 5.67 0.00 0.00 3.16
1359 1404 2.094675 AGGCGGATGTTTCAATGGAAG 58.905 47.619 0.00 0.00 33.82 3.46
1363 1408 3.347216 CGGATGTTTCAATGGAAGTCCT 58.653 45.455 0.00 0.00 36.82 3.85
1368 1413 6.646653 GGATGTTTCAATGGAAGTCCTTTTTC 59.353 38.462 0.00 0.00 36.82 2.29
1452 1501 4.394300 AGGATGAAGAAAATTGCTCAGTCG 59.606 41.667 0.00 0.00 0.00 4.18
1462 1511 7.868415 AGAAAATTGCTCAGTCGGACTATATAC 59.132 37.037 10.87 0.05 0.00 1.47
1464 1513 6.842437 ATTGCTCAGTCGGACTATATACAT 57.158 37.500 10.87 0.00 0.00 2.29
1465 1514 5.629079 TGCTCAGTCGGACTATATACATG 57.371 43.478 10.87 0.00 0.00 3.21
1469 1518 6.148976 GCTCAGTCGGACTATATACATGTGTA 59.851 42.308 10.87 6.70 34.67 2.90
1470 1519 7.624554 GCTCAGTCGGACTATATACATGTGTAG 60.625 44.444 10.87 10.40 33.52 2.74
1471 1520 6.653740 TCAGTCGGACTATATACATGTGTAGG 59.346 42.308 10.87 6.25 33.52 3.18
1472 1521 6.653740 CAGTCGGACTATATACATGTGTAGGA 59.346 42.308 10.87 0.00 33.52 2.94
1473 1522 6.879993 AGTCGGACTATATACATGTGTAGGAG 59.120 42.308 9.33 10.23 33.52 3.69
1556 1605 1.739371 GCAAGTAGCTAGTTCCGTGGG 60.739 57.143 10.99 0.69 41.15 4.61
1602 1651 4.588951 ACTCACAGTTGACAGATTAGACCA 59.411 41.667 0.00 0.00 0.00 4.02
1607 1656 5.187772 ACAGTTGACAGATTAGACCATGCTA 59.812 40.000 0.00 0.00 0.00 3.49
1681 1730 5.651172 TTGATGGTATATGCTTCGTTTCG 57.349 39.130 0.00 0.00 0.00 3.46
1793 1844 3.135167 TCTTGCTGTGATCATCTATGGCA 59.865 43.478 0.00 0.00 0.00 4.92
1794 1845 3.121738 TGCTGTGATCATCTATGGCAG 57.878 47.619 0.00 0.43 0.00 4.85
1952 2003 0.687354 TGTGAGCCAGGGAGTTTCTC 59.313 55.000 0.00 0.00 0.00 2.87
2440 2499 4.279145 TCCTCCTCATACTGTGTTAGGAC 58.721 47.826 3.64 0.00 32.93 3.85
2455 2514 1.338107 AGGACATGAACAGACCGTCA 58.662 50.000 0.00 0.00 0.00 4.35
2473 2532 3.122948 CGTCAGATTGTTTCCTTACCGTG 59.877 47.826 0.00 0.00 0.00 4.94
2494 2553 0.821301 TTGCGCACACAATCTTCCCA 60.821 50.000 11.12 0.00 0.00 4.37
2680 2740 0.445043 CACATGATCACTGCACGGTG 59.555 55.000 3.15 3.15 38.44 4.94
2691 2751 1.812922 GCACGGTGCTCATCCTCAG 60.813 63.158 25.08 0.00 40.96 3.35
2692 2752 1.593787 CACGGTGCTCATCCTCAGT 59.406 57.895 0.00 0.00 0.00 3.41
2693 2753 0.817654 CACGGTGCTCATCCTCAGTA 59.182 55.000 0.00 0.00 0.00 2.74
2694 2754 0.818296 ACGGTGCTCATCCTCAGTAC 59.182 55.000 0.00 0.00 0.00 2.73
2695 2755 0.103208 CGGTGCTCATCCTCAGTACC 59.897 60.000 0.00 0.00 41.83 3.34
2696 2756 1.195115 GGTGCTCATCCTCAGTACCA 58.805 55.000 2.43 0.00 44.00 3.25
2697 2757 1.765314 GGTGCTCATCCTCAGTACCAT 59.235 52.381 2.43 0.00 44.00 3.55
2698 2758 2.171448 GGTGCTCATCCTCAGTACCATT 59.829 50.000 2.43 0.00 44.00 3.16
2699 2759 3.462021 GTGCTCATCCTCAGTACCATTC 58.538 50.000 0.00 0.00 0.00 2.67
2700 2760 2.435805 TGCTCATCCTCAGTACCATTCC 59.564 50.000 0.00 0.00 0.00 3.01
2701 2761 2.224402 GCTCATCCTCAGTACCATTCCC 60.224 54.545 0.00 0.00 0.00 3.97
2702 2762 3.041211 CTCATCCTCAGTACCATTCCCA 58.959 50.000 0.00 0.00 0.00 4.37
2703 2763 2.771943 TCATCCTCAGTACCATTCCCAC 59.228 50.000 0.00 0.00 0.00 4.61
2704 2764 2.335681 TCCTCAGTACCATTCCCACA 57.664 50.000 0.00 0.00 0.00 4.17
2705 2765 2.187958 TCCTCAGTACCATTCCCACAG 58.812 52.381 0.00 0.00 0.00 3.66
2706 2766 2.187958 CCTCAGTACCATTCCCACAGA 58.812 52.381 0.00 0.00 0.00 3.41
2707 2767 2.774234 CCTCAGTACCATTCCCACAGAT 59.226 50.000 0.00 0.00 0.00 2.90
2708 2768 3.432749 CCTCAGTACCATTCCCACAGATG 60.433 52.174 0.00 0.00 0.00 2.90
2709 2769 2.092968 TCAGTACCATTCCCACAGATGC 60.093 50.000 0.00 0.00 0.00 3.91
2710 2770 2.092753 CAGTACCATTCCCACAGATGCT 60.093 50.000 0.00 0.00 0.00 3.79
2711 2771 3.134623 CAGTACCATTCCCACAGATGCTA 59.865 47.826 0.00 0.00 0.00 3.49
2712 2772 2.717639 ACCATTCCCACAGATGCTAC 57.282 50.000 0.00 0.00 0.00 3.58
2713 2773 1.915489 ACCATTCCCACAGATGCTACA 59.085 47.619 0.00 0.00 0.00 2.74
2714 2774 2.308570 ACCATTCCCACAGATGCTACAA 59.691 45.455 0.00 0.00 0.00 2.41
2715 2775 2.947652 CCATTCCCACAGATGCTACAAG 59.052 50.000 0.00 0.00 0.00 3.16
2716 2776 3.614092 CATTCCCACAGATGCTACAAGT 58.386 45.455 0.00 0.00 0.00 3.16
2717 2777 2.768253 TCCCACAGATGCTACAAGTG 57.232 50.000 0.00 0.00 0.00 3.16
2718 2778 1.089920 CCCACAGATGCTACAAGTGC 58.910 55.000 0.00 0.00 0.00 4.40
2719 2779 1.089920 CCACAGATGCTACAAGTGCC 58.910 55.000 0.00 0.00 0.00 5.01
2720 2780 0.723414 CACAGATGCTACAAGTGCCG 59.277 55.000 0.00 0.00 0.00 5.69
2721 2781 0.321671 ACAGATGCTACAAGTGCCGT 59.678 50.000 0.00 0.00 0.00 5.68
2722 2782 1.002366 CAGATGCTACAAGTGCCGTC 58.998 55.000 0.00 0.00 0.00 4.79
2723 2783 0.898320 AGATGCTACAAGTGCCGTCT 59.102 50.000 0.00 0.00 0.00 4.18
2724 2784 1.002366 GATGCTACAAGTGCCGTCTG 58.998 55.000 0.00 0.00 0.00 3.51
2725 2785 0.321671 ATGCTACAAGTGCCGTCTGT 59.678 50.000 0.00 0.00 0.00 3.41
2726 2786 0.319555 TGCTACAAGTGCCGTCTGTC 60.320 55.000 0.00 0.00 0.00 3.51
2727 2787 0.319555 GCTACAAGTGCCGTCTGTCA 60.320 55.000 0.00 0.00 0.00 3.58
2728 2788 1.419374 CTACAAGTGCCGTCTGTCAC 58.581 55.000 0.00 0.00 0.00 3.67
2729 2789 0.747852 TACAAGTGCCGTCTGTCACA 59.252 50.000 0.00 0.00 35.76 3.58
2761 2860 5.476091 TTCCACTTGTTTTCCTTTGTTGT 57.524 34.783 0.00 0.00 0.00 3.32
2785 2884 2.183555 GTTCGTAGCCACCCTCCG 59.816 66.667 0.00 0.00 0.00 4.63
2820 2919 3.491766 TCTTCCCAGGGACTTCTATGT 57.508 47.619 8.12 0.00 34.60 2.29
3066 3165 1.536662 AGGACCTGCGGAACCTTCT 60.537 57.895 0.00 0.00 31.99 2.85
3131 3230 3.859386 GCAATTTTTGGCGATCAGGTTAG 59.141 43.478 0.00 0.00 0.00 2.34
3137 3236 3.795623 TGGCGATCAGGTTAGTCTAAC 57.204 47.619 13.49 13.49 37.94 2.34
3174 3273 6.384224 TGTCGTATTTCATAGTTGAACGAGT 58.616 36.000 0.00 0.00 41.02 4.18
3479 3578 4.169696 CCTATTGACGGCCGCCCA 62.170 66.667 28.58 21.25 0.00 5.36
3533 3632 3.135530 AGATGGTCCTTGATTGTCTAGGC 59.864 47.826 3.06 0.00 38.91 3.93
4001 4100 2.738846 CGCACAAAGTGAGAATGCTACT 59.261 45.455 0.58 0.00 35.44 2.57
4316 4415 6.986250 AGAGACGCATCATGAGTATATTCAA 58.014 36.000 0.09 0.00 28.29 2.69
4764 4866 2.287608 GCCACACAAGCCTTAGTGTTTC 60.288 50.000 9.11 2.99 46.04 2.78
4822 4924 2.631384 TGGTGAGATCAAGGAAAGGGA 58.369 47.619 0.00 0.00 0.00 4.20
4825 4927 3.200825 GGTGAGATCAAGGAAAGGGATGA 59.799 47.826 0.00 0.00 0.00 2.92
4878 4980 0.605083 CTCATATGGCGGCTCAGCTA 59.395 55.000 11.43 0.00 37.29 3.32
5081 5183 0.445436 GTGACTCAGCTTCATTGGCG 59.555 55.000 0.00 0.00 34.52 5.69
5150 5252 2.421424 GGATGTTGATCAAGCTGGACAC 59.579 50.000 8.80 0.00 0.00 3.67
5151 5253 2.636647 TGTTGATCAAGCTGGACACA 57.363 45.000 8.80 0.00 0.00 3.72
5156 5258 0.399454 ATCAAGCTGGACACACTGCT 59.601 50.000 0.00 0.00 45.84 4.24
5237 5342 1.067295 TTGATGTTGTGCCCTCTCCT 58.933 50.000 0.00 0.00 0.00 3.69
5238 5343 0.615331 TGATGTTGTGCCCTCTCCTC 59.385 55.000 0.00 0.00 0.00 3.71
5239 5344 0.107459 GATGTTGTGCCCTCTCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
5246 5351 1.194781 TGCCCTCTCCTCCACAAGAC 61.195 60.000 0.00 0.00 0.00 3.01
5247 5352 1.893786 CCCTCTCCTCCACAAGACG 59.106 63.158 0.00 0.00 0.00 4.18
5264 5369 2.677003 CGGCGCCGATGTCAAACTT 61.677 57.895 44.86 0.00 42.83 2.66
5323 5428 1.542547 GGAGGAGGAAAACAACAGCGA 60.543 52.381 0.00 0.00 0.00 4.93
5411 5516 2.019984 GATGCCGATTCCAGCTTCTTT 58.980 47.619 0.00 0.00 32.15 2.52
5457 5562 1.271108 TGTAGTTGATGCCGCTTTCCA 60.271 47.619 0.00 0.00 0.00 3.53
5515 5620 2.542766 ATTCGGTTTGTTATGCAGCG 57.457 45.000 0.00 0.00 0.00 5.18
5556 5661 6.434028 ACAAATAGCTTCTTGATGTTGGCTAA 59.566 34.615 12.90 0.00 36.19 3.09
5597 5704 5.351233 TGTTTATTAGTCGTGCAGGTTTG 57.649 39.130 6.26 0.00 0.00 2.93
5603 5710 1.140252 AGTCGTGCAGGTTTGGTTACT 59.860 47.619 6.26 0.00 0.00 2.24
5607 5714 1.336755 GTGCAGGTTTGGTTACTGGTG 59.663 52.381 0.00 0.00 32.98 4.17
5613 5720 5.067273 CAGGTTTGGTTACTGGTGTAATCA 58.933 41.667 0.00 0.00 45.03 2.57
5623 5730 5.179452 ACTGGTGTAATCATTTAGCTGGT 57.821 39.130 0.00 0.00 0.00 4.00
5646 5753 7.235193 TGGTACTCTACTACTCCCTCTGTATAG 59.765 44.444 0.00 0.00 0.00 1.31
5653 5760 7.875338 ACTACTCCCTCTGTATAGTGATCTA 57.125 40.000 0.00 0.00 0.00 1.98
5655 5762 8.725256 ACTACTCCCTCTGTATAGTGATCTAAA 58.275 37.037 0.00 0.00 0.00 1.85
5699 5807 9.685828 CAGAGAGAGTACTTATATAGGCAAAAC 57.314 37.037 0.00 0.00 0.00 2.43
5702 5810 9.203163 AGAGAGTACTTATATAGGCAAAACTGT 57.797 33.333 0.00 0.00 0.00 3.55
5710 5818 9.877178 CTTATATAGGCAAAACTGTAGATAGGG 57.123 37.037 0.00 0.00 0.00 3.53
5742 5850 6.431198 TTTTACATCGGAGATAAAAGGTGC 57.569 37.500 5.54 0.00 45.12 5.01
5788 5899 6.792542 CTGAATATCAGCTTCAGGCGAAGATA 60.793 42.308 18.67 10.59 45.96 1.98
5828 5942 3.526931 TTCAGGCGAAGATGTCTAAGG 57.473 47.619 0.00 0.00 0.00 2.69
5829 5943 2.735151 TCAGGCGAAGATGTCTAAGGA 58.265 47.619 0.00 0.00 0.00 3.36
5830 5944 2.690497 TCAGGCGAAGATGTCTAAGGAG 59.310 50.000 0.00 0.00 0.00 3.69
5831 5945 2.428890 CAGGCGAAGATGTCTAAGGAGT 59.571 50.000 0.00 0.00 0.00 3.85
5832 5946 3.632604 CAGGCGAAGATGTCTAAGGAGTA 59.367 47.826 0.00 0.00 0.00 2.59
5833 5947 3.886505 AGGCGAAGATGTCTAAGGAGTAG 59.113 47.826 0.00 0.00 0.00 2.57
5846 5960 8.563502 TGTCTAAGGAGTAGGGAGTAGAAAATA 58.436 37.037 0.00 0.00 0.00 1.40
5883 5997 1.296056 GGCTTTCATACCGCACACGT 61.296 55.000 0.00 0.00 37.70 4.49
5888 6002 0.032267 TCATACCGCACACGTGAACA 59.968 50.000 25.01 0.93 37.70 3.18
5895 6009 1.795170 GCACACGTGAACAAGCCCAT 61.795 55.000 25.01 0.00 0.00 4.00
5899 6015 1.603455 CGTGAACAAGCCCATGGGT 60.603 57.895 31.58 15.87 37.65 4.51
5939 6056 2.046988 TGCGATGGCCACACAGAG 60.047 61.111 8.16 0.00 38.85 3.35
5990 6107 1.855978 CAGCGTCGTTATTATTCCGCA 59.144 47.619 0.00 0.00 43.24 5.69
6138 6255 0.033796 ACCGTCCGGGAGATGTAAGA 60.034 55.000 10.91 0.00 39.97 2.10
6200 6326 0.887933 GCGCTCTTTCATTTTCCCCA 59.112 50.000 0.00 0.00 0.00 4.96
6209 6335 2.350458 ATTTTCCCCATGCGCGCTT 61.350 52.632 33.29 24.21 0.00 4.68
6295 6422 3.119173 AGAGATCGAGCAGAAGGTTTGAG 60.119 47.826 2.38 0.00 0.00 3.02
6296 6423 2.564947 AGATCGAGCAGAAGGTTTGAGT 59.435 45.455 2.38 0.00 0.00 3.41
6299 6426 2.300152 TCGAGCAGAAGGTTTGAGTGAT 59.700 45.455 0.00 0.00 0.00 3.06
6300 6427 2.670414 CGAGCAGAAGGTTTGAGTGATC 59.330 50.000 0.00 0.00 0.00 2.92
6301 6428 2.670414 GAGCAGAAGGTTTGAGTGATCG 59.330 50.000 0.00 0.00 0.00 3.69
6302 6429 2.037772 AGCAGAAGGTTTGAGTGATCGT 59.962 45.455 0.00 0.00 0.00 3.73
6303 6430 2.158449 GCAGAAGGTTTGAGTGATCGTG 59.842 50.000 0.00 0.00 0.00 4.35
6304 6431 3.393800 CAGAAGGTTTGAGTGATCGTGT 58.606 45.455 0.00 0.00 0.00 4.49
6305 6432 4.556233 CAGAAGGTTTGAGTGATCGTGTA 58.444 43.478 0.00 0.00 0.00 2.90
6306 6433 5.171476 CAGAAGGTTTGAGTGATCGTGTAT 58.829 41.667 0.00 0.00 0.00 2.29
6375 6502 3.565764 ATGTCCATGGTGTATCTGTGG 57.434 47.619 12.58 0.00 0.00 4.17
6379 6506 2.236146 TCCATGGTGTATCTGTGGTGTC 59.764 50.000 12.58 0.00 0.00 3.67
6380 6507 2.027285 CCATGGTGTATCTGTGGTGTCA 60.027 50.000 2.57 0.00 0.00 3.58
6381 6508 2.831685 TGGTGTATCTGTGGTGTCAC 57.168 50.000 0.00 0.00 43.87 3.67
6391 6518 3.723772 TGGTGTCACAACCATCCTG 57.276 52.632 5.12 0.00 45.43 3.86
6392 6519 1.135960 TGGTGTCACAACCATCCTGA 58.864 50.000 5.12 0.00 45.43 3.86
6393 6520 1.492599 TGGTGTCACAACCATCCTGAA 59.507 47.619 5.12 0.00 45.43 3.02
6395 6522 3.157087 GGTGTCACAACCATCCTGAAAT 58.843 45.455 5.12 0.00 40.22 2.17
6396 6523 3.573967 GGTGTCACAACCATCCTGAAATT 59.426 43.478 5.12 0.00 40.22 1.82
6397 6524 4.039124 GGTGTCACAACCATCCTGAAATTT 59.961 41.667 5.12 0.00 40.22 1.82
6398 6525 5.453198 GGTGTCACAACCATCCTGAAATTTT 60.453 40.000 5.12 0.00 40.22 1.82
6401 6528 7.329226 GTGTCACAACCATCCTGAAATTTTATG 59.671 37.037 0.00 0.00 0.00 1.90
6409 6536 7.673926 ACCATCCTGAAATTTTATGTTGTACCT 59.326 33.333 0.00 0.00 0.00 3.08
6429 6556 1.189403 GATAGGTTCTTGACGCGACG 58.811 55.000 15.93 0.00 0.00 5.12
6431 6558 0.592637 TAGGTTCTTGACGCGACGAA 59.407 50.000 15.93 3.67 0.00 3.85
6474 6601 1.453155 GTTCAGACATGGCGGACATT 58.547 50.000 0.00 0.00 37.84 2.71
6497 6624 1.024271 CGGGCCACCAAGAATATGTG 58.976 55.000 4.39 0.00 36.13 3.21
6591 6719 2.661675 CACATTTTGATCGAGTCGTCGT 59.338 45.455 13.12 0.00 46.85 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.312371 TTATTTGCTGCACCCGCTCC 61.312 55.000 0.00 0.00 39.64 4.70
19 20 0.099436 CTTATTTGCTGCACCCGCTC 59.901 55.000 0.00 0.00 39.64 5.03
20 21 1.937546 GCTTATTTGCTGCACCCGCT 61.938 55.000 0.00 0.00 39.64 5.52
21 22 1.517039 GCTTATTTGCTGCACCCGC 60.517 57.895 0.00 0.00 39.24 6.13
22 23 1.226379 CGCTTATTTGCTGCACCCG 60.226 57.895 0.00 0.00 0.00 5.28
23 24 1.139520 CCGCTTATTTGCTGCACCC 59.860 57.895 0.00 0.00 0.00 4.61
24 25 1.517039 GCCGCTTATTTGCTGCACC 60.517 57.895 0.00 0.00 41.65 5.01
25 26 1.869132 CGCCGCTTATTTGCTGCAC 60.869 57.895 0.00 0.00 42.03 4.57
26 27 2.484662 CGCCGCTTATTTGCTGCA 59.515 55.556 0.00 0.00 42.03 4.41
27 28 2.951227 GCGCCGCTTATTTGCTGC 60.951 61.111 0.00 0.00 39.28 5.25
28 29 2.648724 CGCGCCGCTTATTTGCTG 60.649 61.111 7.78 0.00 0.00 4.41
29 30 2.813179 CTCGCGCCGCTTATTTGCT 61.813 57.895 7.78 0.00 0.00 3.91
30 31 2.105960 ATCTCGCGCCGCTTATTTGC 62.106 55.000 7.78 0.00 0.00 3.68
31 32 0.304705 AATCTCGCGCCGCTTATTTG 59.695 50.000 7.78 0.00 0.00 2.32
32 33 0.304705 CAATCTCGCGCCGCTTATTT 59.695 50.000 7.78 0.00 0.00 1.40
33 34 1.934463 CAATCTCGCGCCGCTTATT 59.066 52.632 7.78 0.81 0.00 1.40
34 35 2.598632 GCAATCTCGCGCCGCTTAT 61.599 57.895 7.78 0.00 0.00 1.73
35 36 3.261951 GCAATCTCGCGCCGCTTA 61.262 61.111 7.78 0.00 0.00 3.09
43 44 2.202479 GGCCAAACGCAATCTCGC 60.202 61.111 0.00 0.00 40.31 5.03
44 45 2.098298 CGGCCAAACGCAATCTCG 59.902 61.111 2.24 0.00 40.31 4.04
45 46 2.485122 CCGGCCAAACGCAATCTC 59.515 61.111 2.24 0.00 40.31 2.75
46 47 3.747976 GCCGGCCAAACGCAATCT 61.748 61.111 18.11 0.00 40.31 2.40
59 60 2.947118 TATGTAGTTCAGCGCGCCGG 62.947 60.000 30.33 21.21 0.00 6.13
60 61 0.939577 ATATGTAGTTCAGCGCGCCG 60.940 55.000 30.33 19.82 0.00 6.46
61 62 0.508641 CATATGTAGTTCAGCGCGCC 59.491 55.000 30.33 12.88 0.00 6.53
62 63 0.111089 GCATATGTAGTTCAGCGCGC 60.111 55.000 26.66 26.66 0.00 6.86
63 64 0.508641 GGCATATGTAGTTCAGCGCG 59.491 55.000 0.00 0.00 0.00 6.86
64 65 0.508641 CGGCATATGTAGTTCAGCGC 59.491 55.000 0.00 0.00 0.00 5.92
65 66 0.508641 GCGGCATATGTAGTTCAGCG 59.491 55.000 4.29 0.00 0.00 5.18
66 67 1.261619 GTGCGGCATATGTAGTTCAGC 59.738 52.381 5.72 0.29 0.00 4.26
67 68 1.522676 CGTGCGGCATATGTAGTTCAG 59.477 52.381 5.72 0.00 0.00 3.02
68 69 1.566404 CGTGCGGCATATGTAGTTCA 58.434 50.000 5.72 0.00 0.00 3.18
69 70 0.232303 GCGTGCGGCATATGTAGTTC 59.768 55.000 5.72 0.00 42.87 3.01
70 71 1.487452 CGCGTGCGGCATATGTAGTT 61.487 55.000 5.72 0.00 43.84 2.24
71 72 1.949133 CGCGTGCGGCATATGTAGT 60.949 57.895 5.72 0.00 43.84 2.73
72 73 2.846224 CGCGTGCGGCATATGTAG 59.154 61.111 5.72 0.00 43.84 2.74
73 74 3.334751 GCGCGTGCGGCATATGTA 61.335 61.111 16.70 0.00 43.84 2.29
83 84 3.691356 GCCAAAAACAGCGCGTGC 61.691 61.111 14.39 14.39 43.24 5.34
84 85 3.385999 CGCCAAAAACAGCGCGTG 61.386 61.111 8.43 7.60 46.50 5.34
90 91 3.977244 AGCGGGCGCCAAAAACAG 61.977 61.111 30.85 10.70 43.17 3.16
91 92 4.277593 CAGCGGGCGCCAAAAACA 62.278 61.111 30.85 0.00 43.17 2.83
100 101 2.363711 TATAGTTGCTCCAGCGGGCG 62.364 60.000 0.00 0.00 45.83 6.13
101 102 0.880718 GTATAGTTGCTCCAGCGGGC 60.881 60.000 0.00 0.00 45.83 6.13
102 103 0.249911 GGTATAGTTGCTCCAGCGGG 60.250 60.000 0.00 0.00 45.83 6.13
103 104 0.597637 CGGTATAGTTGCTCCAGCGG 60.598 60.000 0.00 0.00 45.83 5.52
104 105 0.597637 CCGGTATAGTTGCTCCAGCG 60.598 60.000 0.00 0.00 45.83 5.18
105 106 0.880718 GCCGGTATAGTTGCTCCAGC 60.881 60.000 1.90 0.00 42.50 4.85
106 107 0.753262 AGCCGGTATAGTTGCTCCAG 59.247 55.000 1.90 0.00 0.00 3.86
107 108 0.464036 CAGCCGGTATAGTTGCTCCA 59.536 55.000 1.90 0.00 30.08 3.86
108 109 0.880718 GCAGCCGGTATAGTTGCTCC 60.881 60.000 1.90 0.00 30.08 4.70
109 110 1.215655 CGCAGCCGGTATAGTTGCTC 61.216 60.000 1.90 0.00 32.80 4.26
110 111 1.227263 CGCAGCCGGTATAGTTGCT 60.227 57.895 1.90 0.00 32.80 3.91
111 112 3.319904 CGCAGCCGGTATAGTTGC 58.680 61.111 1.90 3.32 0.00 4.17
129 130 2.557265 AATGGACGTTTTAGCGCGCG 62.557 55.000 28.44 28.44 34.88 6.86
130 131 0.453782 AAATGGACGTTTTAGCGCGC 60.454 50.000 26.66 26.66 34.88 6.86
131 132 1.958417 AAAATGGACGTTTTAGCGCG 58.042 45.000 0.00 0.00 34.88 6.86
132 133 2.160026 GCAAAAATGGACGTTTTAGCGC 60.160 45.455 0.00 0.00 31.43 5.92
133 134 2.088360 CGCAAAAATGGACGTTTTAGCG 59.912 45.455 13.05 13.05 38.17 4.26
134 135 2.407026 CCGCAAAAATGGACGTTTTAGC 59.593 45.455 2.95 0.00 31.43 3.09
135 136 2.983803 CCCGCAAAAATGGACGTTTTAG 59.016 45.455 2.95 0.00 31.43 1.85
136 137 2.288273 CCCCGCAAAAATGGACGTTTTA 60.288 45.455 2.95 0.00 31.43 1.52
137 138 1.539280 CCCCGCAAAAATGGACGTTTT 60.539 47.619 0.00 0.00 32.94 2.43
138 139 0.032815 CCCCGCAAAAATGGACGTTT 59.967 50.000 0.00 0.00 0.00 3.60
139 140 1.663173 CCCCGCAAAAATGGACGTT 59.337 52.632 0.00 0.00 0.00 3.99
140 141 2.926420 GCCCCGCAAAAATGGACGT 61.926 57.895 0.00 0.00 0.00 4.34
141 142 2.126110 GCCCCGCAAAAATGGACG 60.126 61.111 0.00 0.00 0.00 4.79
142 143 2.126110 CGCCCCGCAAAAATGGAC 60.126 61.111 0.00 0.00 0.00 4.02
143 144 3.377759 CCGCCCCGCAAAAATGGA 61.378 61.111 0.00 0.00 0.00 3.41
162 163 1.566018 AACAGTCGCGCCAAACTAGC 61.566 55.000 0.00 0.00 0.00 3.42
163 164 0.163788 CAACAGTCGCGCCAAACTAG 59.836 55.000 0.00 1.56 0.00 2.57
164 165 1.225376 CCAACAGTCGCGCCAAACTA 61.225 55.000 0.00 0.00 0.00 2.24
165 166 2.542907 CCAACAGTCGCGCCAAACT 61.543 57.895 0.00 0.00 0.00 2.66
166 167 2.051345 CCAACAGTCGCGCCAAAC 60.051 61.111 0.00 0.00 0.00 2.93
167 168 2.203084 TCCAACAGTCGCGCCAAA 60.203 55.556 0.00 0.00 0.00 3.28
168 169 2.449031 ATCTCCAACAGTCGCGCCAA 62.449 55.000 0.00 0.00 0.00 4.52
169 170 2.942796 ATCTCCAACAGTCGCGCCA 61.943 57.895 0.00 0.00 0.00 5.69
170 171 2.125512 ATCTCCAACAGTCGCGCC 60.126 61.111 0.00 0.00 0.00 6.53
171 172 1.291877 AACATCTCCAACAGTCGCGC 61.292 55.000 0.00 0.00 0.00 6.86
172 173 0.716108 GAACATCTCCAACAGTCGCG 59.284 55.000 0.00 0.00 0.00 5.87
173 174 2.086054 AGAACATCTCCAACAGTCGC 57.914 50.000 0.00 0.00 0.00 5.19
174 175 4.177026 CCTTAGAACATCTCCAACAGTCG 58.823 47.826 0.00 0.00 0.00 4.18
175 176 4.932200 CACCTTAGAACATCTCCAACAGTC 59.068 45.833 0.00 0.00 0.00 3.51
176 177 4.348168 ACACCTTAGAACATCTCCAACAGT 59.652 41.667 0.00 0.00 0.00 3.55
177 178 4.899502 ACACCTTAGAACATCTCCAACAG 58.100 43.478 0.00 0.00 0.00 3.16
178 179 4.974645 ACACCTTAGAACATCTCCAACA 57.025 40.909 0.00 0.00 0.00 3.33
179 180 8.258708 ACTAATACACCTTAGAACATCTCCAAC 58.741 37.037 0.00 0.00 33.73 3.77
180 181 8.375493 ACTAATACACCTTAGAACATCTCCAA 57.625 34.615 0.00 0.00 33.73 3.53
181 182 7.973048 ACTAATACACCTTAGAACATCTCCA 57.027 36.000 0.00 0.00 33.73 3.86
182 183 9.668497 AAAACTAATACACCTTAGAACATCTCC 57.332 33.333 0.00 0.00 33.73 3.71
216 217 9.586435 CTTGGTCAAAGTAAAAGAAATTTGTCT 57.414 29.630 0.00 0.00 34.88 3.41
404 406 8.177119 TCCCACTATTTCAAAATATATGGTGC 57.823 34.615 16.83 0.00 36.36 5.01
437 439 6.480320 CGTGTTGTTGGGGATTTTCATAAAAA 59.520 34.615 0.00 0.00 38.66 1.94
438 440 5.986135 CGTGTTGTTGGGGATTTTCATAAAA 59.014 36.000 0.00 0.00 34.41 1.52
441 443 4.399219 TCGTGTTGTTGGGGATTTTCATA 58.601 39.130 0.00 0.00 0.00 2.15
442 444 3.226777 TCGTGTTGTTGGGGATTTTCAT 58.773 40.909 0.00 0.00 0.00 2.57
443 445 2.656002 TCGTGTTGTTGGGGATTTTCA 58.344 42.857 0.00 0.00 0.00 2.69
444 446 3.377439 GTTCGTGTTGTTGGGGATTTTC 58.623 45.455 0.00 0.00 0.00 2.29
448 450 0.887387 CCGTTCGTGTTGTTGGGGAT 60.887 55.000 0.00 0.00 0.00 3.85
449 451 1.524165 CCGTTCGTGTTGTTGGGGA 60.524 57.895 0.00 0.00 0.00 4.81
450 452 3.027292 CCGTTCGTGTTGTTGGGG 58.973 61.111 0.00 0.00 0.00 4.96
492 494 9.460019 TCCATGTGAACATTCATGATTTACTAA 57.540 29.630 0.00 0.00 42.52 2.24
659 683 7.781056 TGGCTTTTCTCTAAAACAAAGTCATT 58.219 30.769 0.00 0.00 36.24 2.57
749 776 4.521256 TGAAATTGTTAGTGTTAGGGGTGC 59.479 41.667 0.00 0.00 0.00 5.01
774 801 6.068379 AGGGGTTTACTCCTCTAGATCACTAA 60.068 42.308 0.00 0.00 36.40 2.24
842 869 2.564721 GCCAGCCGCTCCAAAAAGT 61.565 57.895 0.00 0.00 0.00 2.66
843 870 2.259511 GCCAGCCGCTCCAAAAAG 59.740 61.111 0.00 0.00 0.00 2.27
939 966 1.522676 GCTTCCGCAACAAAGAAAAGC 59.477 47.619 0.00 0.00 35.78 3.51
940 967 2.808244 TGCTTCCGCAACAAAGAAAAG 58.192 42.857 0.00 0.00 44.62 2.27
941 968 2.949451 TGCTTCCGCAACAAAGAAAA 57.051 40.000 0.00 0.00 44.62 2.29
1224 1252 1.665679 ACTTGAATAATCTGCGCACCG 59.334 47.619 5.66 0.00 0.00 4.94
1260 1288 0.252330 TCGATCCAACCCACCCACTA 60.252 55.000 0.00 0.00 0.00 2.74
1261 1289 0.914417 ATCGATCCAACCCACCCACT 60.914 55.000 0.00 0.00 0.00 4.00
1262 1290 0.834612 TATCGATCCAACCCACCCAC 59.165 55.000 0.00 0.00 0.00 4.61
1263 1291 1.419762 CATATCGATCCAACCCACCCA 59.580 52.381 0.00 0.00 0.00 4.51
1264 1292 1.420138 ACATATCGATCCAACCCACCC 59.580 52.381 0.00 0.00 0.00 4.61
1267 1295 4.263287 CCCATTACATATCGATCCAACCCA 60.263 45.833 0.00 0.00 0.00 4.51
1268 1296 4.261801 CCCATTACATATCGATCCAACCC 58.738 47.826 0.00 0.00 0.00 4.11
1269 1297 4.261801 CCCCATTACATATCGATCCAACC 58.738 47.826 0.00 0.00 0.00 3.77
1271 1299 3.329225 TGCCCCATTACATATCGATCCAA 59.671 43.478 0.00 0.00 0.00 3.53
1273 1301 3.055094 ACTGCCCCATTACATATCGATCC 60.055 47.826 0.00 0.00 0.00 3.36
1274 1302 3.935203 CACTGCCCCATTACATATCGATC 59.065 47.826 0.00 0.00 0.00 3.69
1275 1303 3.307691 CCACTGCCCCATTACATATCGAT 60.308 47.826 2.16 2.16 0.00 3.59
1276 1304 2.038426 CCACTGCCCCATTACATATCGA 59.962 50.000 0.00 0.00 0.00 3.59
1277 1305 2.426522 CCACTGCCCCATTACATATCG 58.573 52.381 0.00 0.00 0.00 2.92
1307 1342 2.575532 CAAGAACAGGTTCAGCAGGAA 58.424 47.619 14.06 0.00 41.84 3.36
1309 1344 0.595095 GCAAGAACAGGTTCAGCAGG 59.405 55.000 18.47 5.11 41.84 4.85
1313 1348 1.576421 GCCGCAAGAACAGGTTCAG 59.424 57.895 14.06 7.43 41.84 3.02
1341 1385 2.159379 GGACTTCCATTGAAACATCCGC 60.159 50.000 0.00 0.00 35.64 5.54
1343 1387 5.728637 AAAGGACTTCCATTGAAACATCC 57.271 39.130 0.00 0.00 38.89 3.51
1359 1404 8.585018 TCCCATTTTTATTCAGAGAAAAAGGAC 58.415 33.333 14.17 0.00 39.01 3.85
1363 1408 8.923270 AGTGTCCCATTTTTATTCAGAGAAAAA 58.077 29.630 7.25 7.25 39.45 1.94
1368 1413 7.824289 TGACTAGTGTCCCATTTTTATTCAGAG 59.176 37.037 0.00 0.00 42.28 3.35
1390 1439 4.351874 TTTTACAGGCTTACAGCTGACT 57.648 40.909 23.35 7.24 41.99 3.41
1452 1501 7.176490 ACTCCTCCTACACATGTATATAGTCC 58.824 42.308 0.00 0.00 0.00 3.85
1462 1511 2.499289 AGAGCAACTCCTCCTACACATG 59.501 50.000 0.00 0.00 32.17 3.21
1464 1513 2.171840 GAGAGCAACTCCTCCTACACA 58.828 52.381 0.33 0.00 39.53 3.72
1465 1514 2.425668 GAGAGAGCAACTCCTCCTACAC 59.574 54.545 7.20 0.00 45.96 2.90
1520 1569 3.030291 ACTTGCAATGACCAACTGGAAA 58.970 40.909 0.00 0.00 38.94 3.13
1523 1572 2.095059 GCTACTTGCAATGACCAACTGG 60.095 50.000 0.00 0.00 42.31 4.00
1556 1605 1.347062 TTTCCCCTCCAAATGTTGCC 58.653 50.000 0.00 0.00 0.00 4.52
1681 1730 4.639135 AGAAAGGAACTCTGCACAAAAC 57.361 40.909 0.00 0.00 38.49 2.43
1806 1857 4.965200 AGGCTTGTCTACTTCAGTTCTT 57.035 40.909 0.00 0.00 0.00 2.52
1810 1861 4.408276 TGAGTAGGCTTGTCTACTTCAGT 58.592 43.478 14.97 0.00 46.91 3.41
1952 2003 1.002251 GTCAGATACGCGGAGAGAAGG 60.002 57.143 12.47 0.00 0.00 3.46
2440 2499 3.329386 ACAATCTGACGGTCTGTTCATG 58.671 45.455 9.88 9.27 0.00 3.07
2455 2514 3.418684 AGCACGGTAAGGAAACAATCT 57.581 42.857 0.00 0.00 0.00 2.40
2494 2553 2.032681 GGCGCTGTTGGTTCCTCT 59.967 61.111 7.64 0.00 0.00 3.69
2676 2736 0.103208 GGTACTGAGGATGAGCACCG 59.897 60.000 0.00 0.00 0.00 4.94
2680 2740 2.224402 GGGAATGGTACTGAGGATGAGC 60.224 54.545 0.00 0.00 0.00 4.26
2691 2751 2.717639 AGCATCTGTGGGAATGGTAC 57.282 50.000 0.00 0.00 0.00 3.34
2692 2752 3.111484 TGTAGCATCTGTGGGAATGGTA 58.889 45.455 0.00 0.00 0.00 3.25
2693 2753 1.915489 TGTAGCATCTGTGGGAATGGT 59.085 47.619 0.00 0.00 0.00 3.55
2694 2754 2.715749 TGTAGCATCTGTGGGAATGG 57.284 50.000 0.00 0.00 0.00 3.16
2695 2755 3.376234 CACTTGTAGCATCTGTGGGAATG 59.624 47.826 0.00 0.00 0.00 2.67
2696 2756 3.614092 CACTTGTAGCATCTGTGGGAAT 58.386 45.455 0.00 0.00 0.00 3.01
2697 2757 2.875672 GCACTTGTAGCATCTGTGGGAA 60.876 50.000 0.00 0.00 0.00 3.97
2698 2758 1.339055 GCACTTGTAGCATCTGTGGGA 60.339 52.381 0.00 0.00 0.00 4.37
2699 2759 1.089920 GCACTTGTAGCATCTGTGGG 58.910 55.000 0.00 0.00 0.00 4.61
2700 2760 1.089920 GGCACTTGTAGCATCTGTGG 58.910 55.000 0.00 0.00 0.00 4.17
2701 2761 0.723414 CGGCACTTGTAGCATCTGTG 59.277 55.000 0.00 0.00 0.00 3.66
2702 2762 0.321671 ACGGCACTTGTAGCATCTGT 59.678 50.000 0.00 0.00 0.00 3.41
2703 2763 1.002366 GACGGCACTTGTAGCATCTG 58.998 55.000 0.00 0.00 0.00 2.90
2704 2764 0.898320 AGACGGCACTTGTAGCATCT 59.102 50.000 0.00 0.00 0.00 2.90
2705 2765 1.002366 CAGACGGCACTTGTAGCATC 58.998 55.000 0.00 0.00 0.00 3.91
2706 2766 0.321671 ACAGACGGCACTTGTAGCAT 59.678 50.000 0.00 0.00 0.00 3.79
2707 2767 0.319555 GACAGACGGCACTTGTAGCA 60.320 55.000 0.00 0.00 0.00 3.49
2708 2768 0.319555 TGACAGACGGCACTTGTAGC 60.320 55.000 0.00 0.00 0.00 3.58
2709 2769 1.269569 TGTGACAGACGGCACTTGTAG 60.270 52.381 0.00 0.00 36.05 2.74
2710 2770 0.747852 TGTGACAGACGGCACTTGTA 59.252 50.000 0.00 0.00 36.05 2.41
2711 2771 0.107897 TTGTGACAGACGGCACTTGT 60.108 50.000 0.00 0.00 36.05 3.16
2712 2772 0.583438 CTTGTGACAGACGGCACTTG 59.417 55.000 0.00 0.00 36.05 3.16
2713 2773 0.464036 TCTTGTGACAGACGGCACTT 59.536 50.000 0.00 0.00 36.05 3.16
2714 2774 0.032678 CTCTTGTGACAGACGGCACT 59.967 55.000 0.00 0.00 36.05 4.40
2715 2775 0.249489 ACTCTTGTGACAGACGGCAC 60.249 55.000 0.00 0.00 35.63 5.01
2716 2776 0.464036 AACTCTTGTGACAGACGGCA 59.536 50.000 0.00 0.00 0.00 5.69
2717 2777 1.140816 GAACTCTTGTGACAGACGGC 58.859 55.000 0.00 0.00 0.00 5.68
2718 2778 2.802787 AGAACTCTTGTGACAGACGG 57.197 50.000 0.00 0.00 0.00 4.79
2719 2779 4.025647 GGAAAAGAACTCTTGTGACAGACG 60.026 45.833 0.00 0.00 36.12 4.18
2720 2780 4.876107 TGGAAAAGAACTCTTGTGACAGAC 59.124 41.667 0.00 0.00 36.12 3.51
2721 2781 4.876107 GTGGAAAAGAACTCTTGTGACAGA 59.124 41.667 0.00 0.00 36.12 3.41
2722 2782 4.878397 AGTGGAAAAGAACTCTTGTGACAG 59.122 41.667 0.00 0.00 36.12 3.51
2723 2783 4.843728 AGTGGAAAAGAACTCTTGTGACA 58.156 39.130 0.00 0.00 36.12 3.58
2724 2784 5.123979 ACAAGTGGAAAAGAACTCTTGTGAC 59.876 40.000 10.22 0.00 42.09 3.67
2725 2785 5.253330 ACAAGTGGAAAAGAACTCTTGTGA 58.747 37.500 10.22 0.00 42.09 3.58
2726 2786 5.567138 ACAAGTGGAAAAGAACTCTTGTG 57.433 39.130 10.22 0.00 42.09 3.33
2727 2787 6.590234 AAACAAGTGGAAAAGAACTCTTGT 57.410 33.333 0.00 0.00 44.37 3.16
2728 2788 6.531594 GGAAAACAAGTGGAAAAGAACTCTTG 59.468 38.462 0.00 0.00 36.12 3.02
2729 2789 6.437477 AGGAAAACAAGTGGAAAAGAACTCTT 59.563 34.615 0.00 0.00 37.91 2.85
2761 2860 1.547372 GGGTGGCTACGAACACTCTAA 59.453 52.381 0.00 0.00 35.24 2.10
2785 2884 5.105595 CCTGGGAAGATCAGAATTTTTGGAC 60.106 44.000 0.00 0.00 34.36 4.02
2820 2919 5.499313 TCATTACATCAGTTGCCAGAATGA 58.501 37.500 0.00 0.00 39.69 2.57
3057 3156 4.527427 AGTAGTGTACTGGAAGAAGGTTCC 59.473 45.833 0.00 0.00 37.69 3.62
3066 3165 7.179966 TCTTAGGATTGAGTAGTGTACTGGAA 58.820 38.462 0.00 0.00 39.59 3.53
3185 3284 8.744652 AGAGAATATAGAATTCAGTGGTATCGG 58.255 37.037 8.44 0.00 0.00 4.18
3479 3578 6.525578 TCATGATCCGTACTAGAACAAACT 57.474 37.500 0.00 0.00 0.00 2.66
3533 3632 4.160642 TGATTGACCTCTTGGATCATGG 57.839 45.455 0.00 0.00 37.04 3.66
4001 4100 2.094700 CCTGTACTGCTTAAGACAGCGA 60.095 50.000 20.11 10.49 43.37 4.93
4316 4415 2.436646 CGCCGTGCTTCCCATTCT 60.437 61.111 0.00 0.00 0.00 2.40
4764 4866 4.562082 TCTTCAAAGCCATGCAGAAATTG 58.438 39.130 0.00 0.00 0.00 2.32
4863 4965 1.742146 CAGTAGCTGAGCCGCCATA 59.258 57.895 0.00 0.00 32.44 2.74
4868 4970 2.985512 GATGGCCAGTAGCTGAGCCG 62.986 65.000 13.05 0.00 44.72 5.52
5150 5252 2.559668 ACCATGTTCCATTTCAGCAGTG 59.440 45.455 0.00 0.00 0.00 3.66
5151 5253 2.559668 CACCATGTTCCATTTCAGCAGT 59.440 45.455 0.00 0.00 0.00 4.40
5156 5258 4.078537 CCTGTACACCATGTTCCATTTCA 58.921 43.478 0.00 0.00 0.00 2.69
5219 5321 0.615331 GAGGAGAGGGCACAACATCA 59.385 55.000 0.00 0.00 0.00 3.07
5227 5329 1.158466 TCTTGTGGAGGAGAGGGCA 59.842 57.895 0.00 0.00 0.00 5.36
5239 5344 3.853330 CATCGGCGCCGTCTTGTG 61.853 66.667 44.16 29.97 40.74 3.33
5246 5351 2.677003 AAGTTTGACATCGGCGCCG 61.677 57.895 42.13 42.13 41.35 6.46
5247 5352 1.154225 CAAGTTTGACATCGGCGCC 60.154 57.895 19.07 19.07 0.00 6.53
5264 5369 2.479560 CGTCGCTACATCATCACCTTCA 60.480 50.000 0.00 0.00 0.00 3.02
5515 5620 0.669318 TTGTCCCAGCGACGAATCAC 60.669 55.000 0.00 0.00 45.23 3.06
5585 5692 1.588674 CAGTAACCAAACCTGCACGA 58.411 50.000 0.00 0.00 0.00 4.35
5597 5704 6.038271 CCAGCTAAATGATTACACCAGTAACC 59.962 42.308 0.00 0.00 42.60 2.85
5603 5710 6.156256 AGAGTACCAGCTAAATGATTACACCA 59.844 38.462 0.00 0.00 0.00 4.17
5607 5714 9.896263 GTAGTAGAGTACCAGCTAAATGATTAC 57.104 37.037 0.00 0.00 0.00 1.89
5613 5720 6.069994 GGGAGTAGTAGAGTACCAGCTAAAT 58.930 44.000 0.00 0.00 30.47 1.40
5623 5730 8.009513 TCACTATACAGAGGGAGTAGTAGAGTA 58.990 40.741 0.00 0.00 37.03 2.59
5724 5832 3.535561 ACAGCACCTTTTATCTCCGATG 58.464 45.455 0.00 0.00 0.00 3.84
5742 5850 2.601763 GACGCGGAAGGTGTAAATACAG 59.398 50.000 12.47 0.00 40.09 2.74
5826 5940 5.544562 GCCATATTTTCTACTCCCTACTCCT 59.455 44.000 0.00 0.00 0.00 3.69
5827 5941 5.280062 GGCCATATTTTCTACTCCCTACTCC 60.280 48.000 0.00 0.00 0.00 3.85
5828 5942 5.280062 GGGCCATATTTTCTACTCCCTACTC 60.280 48.000 4.39 0.00 0.00 2.59
5829 5943 4.597940 GGGCCATATTTTCTACTCCCTACT 59.402 45.833 4.39 0.00 0.00 2.57
5830 5944 4.562963 CGGGCCATATTTTCTACTCCCTAC 60.563 50.000 4.39 0.00 0.00 3.18
5831 5945 3.581332 CGGGCCATATTTTCTACTCCCTA 59.419 47.826 4.39 0.00 0.00 3.53
5832 5946 2.372172 CGGGCCATATTTTCTACTCCCT 59.628 50.000 4.39 0.00 0.00 4.20
5833 5947 2.779506 CGGGCCATATTTTCTACTCCC 58.220 52.381 4.39 0.00 0.00 4.30
5883 5997 1.004277 GTCTACCCATGGGCTTGTTCA 59.996 52.381 31.73 4.84 39.32 3.18
5888 6002 3.043999 GCCGTCTACCCATGGGCTT 62.044 63.158 31.73 15.31 40.59 4.35
5895 6009 2.753043 GACTCGGCCGTCTACCCA 60.753 66.667 27.15 1.93 0.00 4.51
5899 6015 0.743701 GACTCTGACTCGGCCGTCTA 60.744 60.000 27.15 4.62 35.00 2.59
6138 6255 6.151480 TCAAAACGAGAAAACAAAAGTAGGGT 59.849 34.615 0.00 0.00 0.00 4.34
6190 6316 2.561549 AAGCGCGCATGGGGAAAATG 62.562 55.000 35.10 0.00 0.00 2.32
6191 6317 1.034838 TAAGCGCGCATGGGGAAAAT 61.035 50.000 35.10 4.83 0.00 1.82
6295 6422 4.896562 TGAAACACGAATACACGATCAC 57.103 40.909 0.00 0.00 37.03 3.06
6296 6423 5.635700 TGAATGAAACACGAATACACGATCA 59.364 36.000 0.00 0.00 37.03 2.92
6299 6426 6.474819 AATGAATGAAACACGAATACACGA 57.525 33.333 0.00 0.00 37.03 4.35
6300 6427 5.444701 CGAATGAATGAAACACGAATACACG 59.555 40.000 0.00 0.00 39.31 4.49
6301 6428 5.225129 GCGAATGAATGAAACACGAATACAC 59.775 40.000 0.00 0.00 0.00 2.90
6302 6429 5.320723 GCGAATGAATGAAACACGAATACA 58.679 37.500 0.00 0.00 0.00 2.29
6303 6430 4.728608 GGCGAATGAATGAAACACGAATAC 59.271 41.667 0.00 0.00 0.00 1.89
6304 6431 4.634004 AGGCGAATGAATGAAACACGAATA 59.366 37.500 0.00 0.00 0.00 1.75
6305 6432 3.440173 AGGCGAATGAATGAAACACGAAT 59.560 39.130 0.00 0.00 0.00 3.34
6306 6433 2.811431 AGGCGAATGAATGAAACACGAA 59.189 40.909 0.00 0.00 0.00 3.85
6375 6502 4.853924 AATTTCAGGATGGTTGTGACAC 57.146 40.909 0.00 0.00 36.16 3.67
6379 6506 7.656948 ACAACATAAAATTTCAGGATGGTTGTG 59.343 33.333 14.77 0.69 36.16 3.33
6380 6507 7.734942 ACAACATAAAATTTCAGGATGGTTGT 58.265 30.769 0.00 0.00 36.16 3.32
6381 6508 9.139174 GTACAACATAAAATTTCAGGATGGTTG 57.861 33.333 0.00 0.00 36.16 3.77
6383 6510 7.673926 AGGTACAACATAAAATTTCAGGATGGT 59.326 33.333 0.00 0.00 36.16 3.55
6385 6512 8.739039 TCAGGTACAACATAAAATTTCAGGATG 58.261 33.333 0.00 0.00 37.54 3.51
6386 6513 8.877864 TCAGGTACAACATAAAATTTCAGGAT 57.122 30.769 0.00 0.00 0.00 3.24
6387 6514 8.877864 ATCAGGTACAACATAAAATTTCAGGA 57.122 30.769 0.00 0.00 0.00 3.86
6409 6536 1.466866 CGTCGCGTCAAGAACCTATCA 60.467 52.381 5.77 0.00 0.00 2.15
6429 6556 2.511600 CCCCACGGCTCATCGTTC 60.512 66.667 0.00 0.00 41.86 3.95
6474 6601 2.130821 TATTCTTGGTGGCCCGTGCA 62.131 55.000 0.00 0.00 40.13 4.57
6558 6685 5.860182 CGATCAAAATGTGCAGAAAACTCAT 59.140 36.000 0.00 0.00 0.00 2.90
6567 6695 2.413112 ACGACTCGATCAAAATGTGCAG 59.587 45.455 5.20 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.