Multiple sequence alignment - TraesCS3B01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G312000 chr3B 100.000 5484 0 0 1 5484 501392233 501386750 0.000000e+00 10128.0
1 TraesCS3B01G312000 chr3B 95.820 311 10 1 4917 5224 757816655 757816345 2.950000e-137 499.0
2 TraesCS3B01G312000 chr3B 95.513 312 10 2 4917 5224 24401367 24401056 3.820000e-136 496.0
3 TraesCS3B01G312000 chr3B 94.569 313 12 4 4910 5218 643949644 643949955 3.840000e-131 479.0
4 TraesCS3B01G312000 chr3A 91.947 1962 97 30 536 2476 507469677 507467756 0.000000e+00 2691.0
5 TraesCS3B01G312000 chr3A 91.449 1263 64 15 2888 4136 507467355 507466123 0.000000e+00 1694.0
6 TraesCS3B01G312000 chr3A 93.306 493 24 1 1 493 507470162 507469679 0.000000e+00 719.0
7 TraesCS3B01G312000 chr3A 92.204 372 22 6 4201 4569 507466115 507465748 2.260000e-143 520.0
8 TraesCS3B01G312000 chr3D 89.957 1872 98 42 650 2476 385428011 385426185 0.000000e+00 2333.0
9 TraesCS3B01G312000 chr3D 93.202 1265 61 15 2888 4136 385425034 385423779 0.000000e+00 1836.0
10 TraesCS3B01G312000 chr3D 86.567 536 46 12 1 534 385428595 385428084 7.970000e-158 568.0
11 TraesCS3B01G312000 chr3D 93.243 370 19 5 4201 4569 385423771 385423407 1.740000e-149 540.0
12 TraesCS3B01G312000 chr3D 88.889 90 8 2 4702 4789 385421380 385421291 5.810000e-20 110.0
13 TraesCS3B01G312000 chr5B 96.721 305 7 2 4917 5218 595042387 595042691 6.340000e-139 505.0
14 TraesCS3B01G312000 chr5B 93.134 335 15 5 4893 5221 361405625 361405293 8.260000e-133 484.0
15 TraesCS3B01G312000 chr5B 95.425 306 9 4 4917 5218 314354179 314354483 2.970000e-132 483.0
16 TraesCS3B01G312000 chr5B 98.000 250 5 0 5213 5462 398176289 398176040 8.440000e-118 435.0
17 TraesCS3B01G312000 chr5B 98.000 250 5 0 5213 5462 574663221 574663470 8.440000e-118 435.0
18 TraesCS3B01G312000 chr5B 97.600 250 6 0 5213 5462 314354527 314354776 3.930000e-116 429.0
19 TraesCS3B01G312000 chr1B 95.779 308 8 3 4916 5218 280099564 280099257 4.940000e-135 492.0
20 TraesCS3B01G312000 chr1B 98.000 250 4 1 5213 5462 212081686 212081438 3.030000e-117 433.0
21 TraesCS3B01G312000 chr1B 97.600 250 6 0 5213 5462 635345846 635346095 3.930000e-116 429.0
22 TraesCS3B01G312000 chr1B 85.714 70 3 6 534 596 645348103 645348172 3.550000e-07 67.6
23 TraesCS3B01G312000 chr6B 95.440 307 9 2 4917 5218 79047227 79047533 8.260000e-133 484.0
24 TraesCS3B01G312000 chr2B 94.586 314 11 3 4917 5224 25495013 25494700 1.070000e-131 481.0
25 TraesCS3B01G312000 chr2B 98.162 272 5 0 5213 5484 728937434 728937705 4.970000e-130 475.0
26 TraesCS3B01G312000 chr2B 98.400 250 4 0 5213 5462 456035113 456035362 1.810000e-119 440.0
27 TraesCS3B01G312000 chr7B 98.162 272 5 0 5213 5484 734599970 734600241 4.970000e-130 475.0
28 TraesCS3B01G312000 chr7B 98.800 250 3 0 5213 5462 730415410 730415161 3.900000e-121 446.0
29 TraesCS3B01G312000 chr7B 97.436 39 1 0 557 595 105006109 105006147 3.550000e-07 67.6
30 TraesCS3B01G312000 chr7B 93.333 45 2 1 554 597 106282304 106282348 1.280000e-06 65.8
31 TraesCS3B01G312000 chr7D 90.323 62 5 1 540 600 123053389 123053450 4.550000e-11 80.5
32 TraesCS3B01G312000 chr5D 93.478 46 2 1 542 586 546906141 546906186 3.550000e-07 67.6
33 TraesCS3B01G312000 chr4D 91.837 49 2 2 556 602 470438812 470438764 3.550000e-07 67.6
34 TraesCS3B01G312000 chr4A 95.122 41 1 1 556 595 512025881 512025921 4.590000e-06 63.9
35 TraesCS3B01G312000 chr4A 92.683 41 2 1 556 595 141573799 141573839 2.130000e-04 58.4
36 TraesCS3B01G312000 chr2D 86.667 60 4 3 556 612 589510010 589510068 4.590000e-06 63.9
37 TraesCS3B01G312000 chr2D 90.476 42 3 1 556 596 175755810 175755851 3.000000e-03 54.7
38 TraesCS3B01G312000 chr1A 88.000 50 3 2 556 603 61007921 61007969 7.670000e-04 56.5
39 TraesCS3B01G312000 chr1A 100.000 28 0 0 556 583 261136659 261136686 1.000000e-02 52.8
40 TraesCS3B01G312000 chr1D 88.889 45 3 2 556 598 185074955 185074911 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G312000 chr3B 501386750 501392233 5483 True 10128.0 10128 100.0000 1 5484 1 chr3B.!!$R2 5483
1 TraesCS3B01G312000 chr3A 507465748 507470162 4414 True 1406.0 2691 92.2265 1 4569 4 chr3A.!!$R1 4568
2 TraesCS3B01G312000 chr3D 385421291 385428595 7304 True 1077.4 2333 90.3716 1 4789 5 chr3D.!!$R1 4788
3 TraesCS3B01G312000 chr5B 314354179 314354776 597 False 456.0 483 96.5125 4917 5462 2 chr5B.!!$F3 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 809 0.032267 TCATACCGCACACGTGAACA 59.968 50.0 25.01 0.93 37.70 3.18 F
1049 1062 0.033796 ACCGTCCGGGAGATGTAAGA 60.034 55.0 10.91 0.00 39.97 2.10 F
1828 1885 0.106708 TTACCTCGCCCTGATGATGC 59.893 55.0 0.00 0.00 0.00 3.91 F
3509 4384 0.396060 GCACCCCAAGCAAATCCAAA 59.604 50.0 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2720 2788 0.108992 ACGGCACTATGGTGTGTACG 60.109 55.0 11.18 12.28 44.65 3.67 R
2885 3703 0.389817 CAGCAGCACTACCAGCGTAA 60.390 55.0 0.00 0.00 37.01 3.18 R
3719 4594 0.039527 CCTTGTGCAACGTAAAGGCC 60.040 55.0 0.00 0.00 42.39 5.19 R
4893 7765 0.034059 GCTAGTACATCGCTGCCCAT 59.966 55.0 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.421424 GGATGTTGATCAAGCTGGACAC 59.579 50.000 8.80 0.00 0.00 3.67
62 63 2.636647 TGTTGATCAAGCTGGACACA 57.363 45.000 8.80 0.00 0.00 3.72
67 68 0.399454 ATCAAGCTGGACACACTGCT 59.601 50.000 0.00 0.00 45.84 4.24
157 158 1.194781 TGCCCTCTCCTCCACAAGAC 61.195 60.000 0.00 0.00 0.00 3.01
158 159 1.893786 CCCTCTCCTCCACAAGACG 59.106 63.158 0.00 0.00 0.00 4.18
175 176 2.677003 CGGCGCCGATGTCAAACTT 61.677 57.895 44.86 0.00 42.83 2.66
234 235 1.542547 GGAGGAGGAAAACAACAGCGA 60.543 52.381 0.00 0.00 0.00 4.93
322 323 2.019984 GATGCCGATTCCAGCTTCTTT 58.980 47.619 0.00 0.00 32.15 2.52
368 369 1.271108 TGTAGTTGATGCCGCTTTCCA 60.271 47.619 0.00 0.00 0.00 3.53
426 427 2.542766 ATTCGGTTTGTTATGCAGCG 57.457 45.000 0.00 0.00 0.00 5.18
467 468 6.434028 ACAAATAGCTTCTTGATGTTGGCTAA 59.566 34.615 12.90 0.00 36.19 3.09
508 511 5.351233 TGTTTATTAGTCGTGCAGGTTTG 57.649 39.130 6.26 0.00 0.00 2.93
514 517 1.140252 AGTCGTGCAGGTTTGGTTACT 59.860 47.619 6.26 0.00 0.00 2.24
518 521 1.336755 GTGCAGGTTTGGTTACTGGTG 59.663 52.381 0.00 0.00 32.98 4.17
524 527 5.067273 CAGGTTTGGTTACTGGTGTAATCA 58.933 41.667 0.00 0.00 45.03 2.57
534 537 5.179452 ACTGGTGTAATCATTTAGCTGGT 57.821 39.130 0.00 0.00 0.00 4.00
557 560 7.235193 TGGTACTCTACTACTCCCTCTGTATAG 59.765 44.444 0.00 0.00 0.00 1.31
564 567 7.875338 ACTACTCCCTCTGTATAGTGATCTA 57.125 40.000 0.00 0.00 0.00 1.98
566 569 8.725256 ACTACTCCCTCTGTATAGTGATCTAAA 58.275 37.037 0.00 0.00 0.00 1.85
610 614 9.685828 CAGAGAGAGTACTTATATAGGCAAAAC 57.314 37.037 0.00 0.00 0.00 2.43
613 617 9.203163 AGAGAGTACTTATATAGGCAAAACTGT 57.797 33.333 0.00 0.00 0.00 3.55
621 625 9.877178 CTTATATAGGCAAAACTGTAGATAGGG 57.123 37.037 0.00 0.00 0.00 3.53
653 657 6.431198 TTTTACATCGGAGATAAAAGGTGC 57.569 37.500 5.54 0.00 45.12 5.01
699 706 6.792542 CTGAATATCAGCTTCAGGCGAAGATA 60.793 42.308 18.67 10.59 45.96 1.98
739 749 3.526931 TTCAGGCGAAGATGTCTAAGG 57.473 47.619 0.00 0.00 0.00 2.69
740 750 2.735151 TCAGGCGAAGATGTCTAAGGA 58.265 47.619 0.00 0.00 0.00 3.36
741 751 2.690497 TCAGGCGAAGATGTCTAAGGAG 59.310 50.000 0.00 0.00 0.00 3.69
742 752 2.428890 CAGGCGAAGATGTCTAAGGAGT 59.571 50.000 0.00 0.00 0.00 3.85
743 753 3.632604 CAGGCGAAGATGTCTAAGGAGTA 59.367 47.826 0.00 0.00 0.00 2.59
744 754 3.886505 AGGCGAAGATGTCTAAGGAGTAG 59.113 47.826 0.00 0.00 0.00 2.57
757 767 8.563502 TGTCTAAGGAGTAGGGAGTAGAAAATA 58.436 37.037 0.00 0.00 0.00 1.40
794 804 1.296056 GGCTTTCATACCGCACACGT 61.296 55.000 0.00 0.00 37.70 4.49
799 809 0.032267 TCATACCGCACACGTGAACA 59.968 50.000 25.01 0.93 37.70 3.18
806 816 1.795170 GCACACGTGAACAAGCCCAT 61.795 55.000 25.01 0.00 0.00 4.00
810 822 1.603455 CGTGAACAAGCCCATGGGT 60.603 57.895 31.58 15.87 37.65 4.51
850 863 2.046988 TGCGATGGCCACACAGAG 60.047 61.111 8.16 0.00 38.85 3.35
901 914 1.855978 CAGCGTCGTTATTATTCCGCA 59.144 47.619 0.00 0.00 43.24 5.69
1049 1062 0.033796 ACCGTCCGGGAGATGTAAGA 60.034 55.000 10.91 0.00 39.97 2.10
1111 1133 0.887933 GCGCTCTTTCATTTTCCCCA 59.112 50.000 0.00 0.00 0.00 4.96
1120 1142 2.350458 ATTTTCCCCATGCGCGCTT 61.350 52.632 33.29 24.21 0.00 4.68
1206 1229 3.119173 AGAGATCGAGCAGAAGGTTTGAG 60.119 47.826 2.38 0.00 0.00 3.02
1207 1230 2.564947 AGATCGAGCAGAAGGTTTGAGT 59.435 45.455 2.38 0.00 0.00 3.41
1210 1233 2.300152 TCGAGCAGAAGGTTTGAGTGAT 59.700 45.455 0.00 0.00 0.00 3.06
1211 1234 2.670414 CGAGCAGAAGGTTTGAGTGATC 59.330 50.000 0.00 0.00 0.00 2.92
1212 1235 2.670414 GAGCAGAAGGTTTGAGTGATCG 59.330 50.000 0.00 0.00 0.00 3.69
1213 1236 2.037772 AGCAGAAGGTTTGAGTGATCGT 59.962 45.455 0.00 0.00 0.00 3.73
1214 1237 2.158449 GCAGAAGGTTTGAGTGATCGTG 59.842 50.000 0.00 0.00 0.00 4.35
1215 1238 3.393800 CAGAAGGTTTGAGTGATCGTGT 58.606 45.455 0.00 0.00 0.00 4.49
1216 1239 4.556233 CAGAAGGTTTGAGTGATCGTGTA 58.444 43.478 0.00 0.00 0.00 2.90
1217 1240 5.171476 CAGAAGGTTTGAGTGATCGTGTAT 58.829 41.667 0.00 0.00 0.00 2.29
1286 1309 3.565764 ATGTCCATGGTGTATCTGTGG 57.434 47.619 12.58 0.00 0.00 4.17
1290 1313 2.236146 TCCATGGTGTATCTGTGGTGTC 59.764 50.000 12.58 0.00 0.00 3.67
1291 1314 2.027285 CCATGGTGTATCTGTGGTGTCA 60.027 50.000 2.57 0.00 0.00 3.58
1292 1315 2.831685 TGGTGTATCTGTGGTGTCAC 57.168 50.000 0.00 0.00 43.87 3.67
1302 1325 3.723772 TGGTGTCACAACCATCCTG 57.276 52.632 5.12 0.00 45.43 3.86
1303 1326 1.135960 TGGTGTCACAACCATCCTGA 58.864 50.000 5.12 0.00 45.43 3.86
1304 1327 1.492599 TGGTGTCACAACCATCCTGAA 59.507 47.619 5.12 0.00 45.43 3.02
1306 1329 3.157087 GGTGTCACAACCATCCTGAAAT 58.843 45.455 5.12 0.00 40.22 2.17
1307 1330 3.573967 GGTGTCACAACCATCCTGAAATT 59.426 43.478 5.12 0.00 40.22 1.82
1308 1331 4.039124 GGTGTCACAACCATCCTGAAATTT 59.961 41.667 5.12 0.00 40.22 1.82
1309 1332 5.453198 GGTGTCACAACCATCCTGAAATTTT 60.453 40.000 5.12 0.00 40.22 1.82
1312 1335 7.329226 GTGTCACAACCATCCTGAAATTTTATG 59.671 37.037 0.00 0.00 0.00 1.90
1320 1343 7.673926 ACCATCCTGAAATTTTATGTTGTACCT 59.326 33.333 0.00 0.00 0.00 3.08
1340 1363 1.189403 GATAGGTTCTTGACGCGACG 58.811 55.000 15.93 0.00 0.00 5.12
1342 1365 0.592637 TAGGTTCTTGACGCGACGAA 59.407 50.000 15.93 3.67 0.00 3.85
1385 1408 1.453155 GTTCAGACATGGCGGACATT 58.547 50.000 0.00 0.00 37.84 2.71
1408 1431 1.024271 CGGGCCACCAAGAATATGTG 58.976 55.000 4.39 0.00 36.13 3.21
1502 1526 2.661675 CACATTTTGATCGAGTCGTCGT 59.338 45.455 13.12 0.00 46.85 4.34
1604 1633 4.264460 CCTGTATAAGGTGATGAGCTCC 57.736 50.000 12.15 0.00 41.74 4.70
1786 1843 4.326548 GTGGCTCGTTTCAGTGTATACTTC 59.673 45.833 4.17 0.00 34.07 3.01
1787 1844 3.864003 GGCTCGTTTCAGTGTATACTTCC 59.136 47.826 4.17 0.00 34.07 3.46
1788 1845 4.381718 GGCTCGTTTCAGTGTATACTTCCT 60.382 45.833 4.17 0.00 34.07 3.36
1789 1846 5.169295 GCTCGTTTCAGTGTATACTTCCTT 58.831 41.667 4.17 0.00 34.07 3.36
1828 1885 0.106708 TTACCTCGCCCTGATGATGC 59.893 55.000 0.00 0.00 0.00 3.91
1851 1908 6.978080 TGCTTTTATTTGTGAAGAAACTCACC 59.022 34.615 1.54 0.00 44.30 4.02
1911 1968 0.890542 TCAATGTGCGCAAGAAGGCT 60.891 50.000 14.00 0.00 43.02 4.58
2012 2070 2.784596 CATTGCATTCGCCGTCGT 59.215 55.556 0.00 0.00 37.32 4.34
2054 2115 2.193087 TAACCCTCGCCTTTCCCTGC 62.193 60.000 0.00 0.00 0.00 4.85
2076 2137 7.028926 TGCACATCTCAAATTTTGCAATTTT 57.971 28.000 9.86 0.68 40.09 1.82
2186 2247 3.807913 GCTACTCCTCTGGTAGTCGCTAT 60.808 52.174 0.00 0.00 38.92 2.97
2209 2270 2.270986 GCACAGCTGGTTCAAGGGG 61.271 63.158 19.93 0.00 0.00 4.79
2295 2362 0.801251 CAGCAGCACTAGACAAAGGC 59.199 55.000 0.00 0.00 0.00 4.35
2311 2378 5.137551 ACAAAGGCCAAAAGAAGCTACTAA 58.862 37.500 5.01 0.00 0.00 2.24
2342 2409 8.186821 AGTGCAAATAGCTCTAAATTAGCAAAG 58.813 33.333 0.00 0.00 44.69 2.77
2358 2425 2.743553 CAAAGGGAGGCTCCAAATCAT 58.256 47.619 33.27 11.28 38.64 2.45
2408 2475 5.478679 TGTTCCAAGTTCACAGAAAGGAAAA 59.521 36.000 9.62 4.43 35.65 2.29
2468 2535 7.286316 GGATCTTCCACATCTGGTCATTATTTT 59.714 37.037 0.00 0.00 38.90 1.82
2580 2647 9.920946 AGTTTGGTTAGATTGTATGATTACCAT 57.079 29.630 0.00 0.00 39.25 3.55
2593 2660 4.991776 TGATTACCATGGTTTCCTTGTCA 58.008 39.130 25.38 13.34 0.00 3.58
2595 2662 1.995376 ACCATGGTTTCCTTGTCACC 58.005 50.000 13.00 0.00 0.00 4.02
2651 2719 4.578871 TGCGCTTATTATGCTGGTATCAT 58.421 39.130 9.73 0.00 0.00 2.45
2669 2737 8.217111 TGGTATCATTTATCATTCTGCTTACCA 58.783 33.333 0.00 0.00 0.00 3.25
2697 2765 3.868661 GCTAGCTAAGAGCCAAAGTTCTC 59.131 47.826 7.70 0.00 43.77 2.87
2698 2766 3.342377 AGCTAAGAGCCAAAGTTCTCC 57.658 47.619 0.00 0.00 43.77 3.71
2719 2787 7.041107 TCTCCTTTGAATTTTCTTGTGTTTGG 58.959 34.615 0.00 0.00 0.00 3.28
2720 2788 5.584251 TCCTTTGAATTTTCTTGTGTTTGGC 59.416 36.000 0.00 0.00 0.00 4.52
2721 2789 5.462034 TTTGAATTTTCTTGTGTTTGGCG 57.538 34.783 0.00 0.00 0.00 5.69
2755 2823 1.859080 GCCGTCGGCTATTTCTTACTG 59.141 52.381 28.98 0.00 46.69 2.74
2758 2827 3.428452 CCGTCGGCTATTTCTTACTGACA 60.428 47.826 0.00 0.00 38.13 3.58
2777 2846 5.407502 TGACAGTATCAAACATACTCACCG 58.592 41.667 0.00 0.00 33.02 4.94
2783 3598 4.465632 TCAAACATACTCACCGTAGCAT 57.534 40.909 0.00 0.00 0.00 3.79
2806 3624 3.813443 TGCTGGATTATTTCTGAGAGCC 58.187 45.455 0.00 0.00 0.00 4.70
2855 3673 6.735130 TGATATACTCACCATAGTGTTGTCG 58.265 40.000 0.00 0.00 44.83 4.35
2856 3674 2.743636 ACTCACCATAGTGTTGTCGG 57.256 50.000 0.00 0.00 44.83 4.79
2859 3677 1.070914 TCACCATAGTGTTGTCGGCAA 59.929 47.619 0.00 0.00 44.83 4.52
2862 3680 3.057596 CACCATAGTGTTGTCGGCAATTT 60.058 43.478 5.40 0.00 39.30 1.82
2863 3681 3.572255 ACCATAGTGTTGTCGGCAATTTT 59.428 39.130 5.40 0.00 36.92 1.82
2864 3682 4.038642 ACCATAGTGTTGTCGGCAATTTTT 59.961 37.500 5.40 0.00 36.92 1.94
2865 3683 4.621034 CCATAGTGTTGTCGGCAATTTTTC 59.379 41.667 5.40 0.00 36.92 2.29
2869 3687 3.485743 GTGTTGTCGGCAATTTTTCTCAC 59.514 43.478 5.40 3.50 36.92 3.51
2872 3690 5.066634 TGTTGTCGGCAATTTTTCTCACTTA 59.933 36.000 5.40 0.00 36.92 2.24
2873 3691 5.356882 TGTCGGCAATTTTTCTCACTTAG 57.643 39.130 0.00 0.00 0.00 2.18
2874 3692 4.159120 GTCGGCAATTTTTCTCACTTAGC 58.841 43.478 0.00 0.00 0.00 3.09
2875 3693 4.072131 TCGGCAATTTTTCTCACTTAGCT 58.928 39.130 0.00 0.00 0.00 3.32
2876 3694 4.518970 TCGGCAATTTTTCTCACTTAGCTT 59.481 37.500 0.00 0.00 0.00 3.74
2877 3695 5.009610 TCGGCAATTTTTCTCACTTAGCTTT 59.990 36.000 0.00 0.00 0.00 3.51
2878 3696 6.205853 TCGGCAATTTTTCTCACTTAGCTTTA 59.794 34.615 0.00 0.00 0.00 1.85
2879 3697 6.305638 CGGCAATTTTTCTCACTTAGCTTTAC 59.694 38.462 0.00 0.00 0.00 2.01
2880 3698 6.305638 GGCAATTTTTCTCACTTAGCTTTACG 59.694 38.462 0.00 0.00 0.00 3.18
2881 3699 6.856426 GCAATTTTTCTCACTTAGCTTTACGT 59.144 34.615 0.00 0.00 0.00 3.57
2882 3700 7.378728 GCAATTTTTCTCACTTAGCTTTACGTT 59.621 33.333 0.00 0.00 0.00 3.99
2885 3703 7.781548 TTTTCTCACTTAGCTTTACGTTCTT 57.218 32.000 0.00 0.00 0.00 2.52
2886 3704 7.781548 TTTCTCACTTAGCTTTACGTTCTTT 57.218 32.000 0.00 0.00 0.00 2.52
2960 3834 0.630673 AGTCAGCCAATGCCCCATTA 59.369 50.000 0.00 0.00 38.69 1.90
3314 4189 4.529897 ACATTGATCTATTTGCTGGCAGA 58.470 39.130 20.86 0.00 0.00 4.26
3453 4328 1.631405 CTTCAACCCATCCTTTGCCA 58.369 50.000 0.00 0.00 0.00 4.92
3479 4354 1.420430 TCCCTTCGGACACAGAGTTT 58.580 50.000 0.00 0.00 31.13 2.66
3504 4379 2.573083 CGTGGCACCCCAAGCAAAT 61.573 57.895 12.86 0.00 44.33 2.32
3505 4380 1.293179 GTGGCACCCCAAGCAAATC 59.707 57.895 6.29 0.00 44.33 2.17
3506 4381 1.912763 TGGCACCCCAAGCAAATCC 60.913 57.895 0.00 0.00 38.46 3.01
3507 4382 1.912763 GGCACCCCAAGCAAATCCA 60.913 57.895 0.00 0.00 0.00 3.41
3508 4383 1.479368 GGCACCCCAAGCAAATCCAA 61.479 55.000 0.00 0.00 0.00 3.53
3509 4384 0.396060 GCACCCCAAGCAAATCCAAA 59.604 50.000 0.00 0.00 0.00 3.28
3550 4425 2.607771 CCGCACCTGAAAATTCAAGTGG 60.608 50.000 20.60 13.99 45.33 4.00
3554 4429 2.034558 ACCTGAAAATTCAAGTGGCACG 59.965 45.455 12.71 0.00 36.64 5.34
3555 4430 2.293122 CCTGAAAATTCAAGTGGCACGA 59.707 45.455 12.71 1.02 36.64 4.35
3580 4455 0.811281 GACCCTTTGGCTGGAATTCG 59.189 55.000 0.00 0.00 33.59 3.34
3719 4594 2.790433 TCGGAGGAGTTGAATTTTGGG 58.210 47.619 0.00 0.00 0.00 4.12
3730 4605 2.966516 TGAATTTTGGGGCCTTTACGTT 59.033 40.909 0.84 0.00 0.00 3.99
3735 4610 1.899534 GGGGCCTTTACGTTGCACA 60.900 57.895 0.84 0.00 0.00 4.57
3739 4614 0.948678 GCCTTTACGTTGCACAAGGA 59.051 50.000 9.84 0.00 38.52 3.36
3751 4626 1.070786 ACAAGGAATCACGCACGGT 59.929 52.632 0.00 0.00 0.00 4.83
3831 4706 2.608752 GCATCAAAACCAGCTGTGAAGG 60.609 50.000 13.81 7.66 0.00 3.46
3832 4707 1.691196 TCAAAACCAGCTGTGAAGGG 58.309 50.000 13.81 0.00 0.00 3.95
3847 4722 1.624312 GAAGGGAGAGACTTTTCGGGT 59.376 52.381 0.00 0.00 0.00 5.28
3900 4775 4.142271 GCCGTGGGTTGATTGATTTGAATA 60.142 41.667 0.00 0.00 0.00 1.75
3922 4801 1.139058 AGCTGCCCGTAAGTATCCTTG 59.861 52.381 0.00 0.00 31.89 3.61
3938 4817 1.929836 CCTTGCTCTGCTAATGACGAC 59.070 52.381 0.00 0.00 0.00 4.34
3961 4840 7.111593 CGACTTATTTGTCCTTTTGACTTTTCG 59.888 37.037 0.00 0.00 44.75 3.46
3966 4845 3.556775 TGTCCTTTTGACTTTTCGTACCG 59.443 43.478 0.00 0.00 44.75 4.02
4011 4894 2.270352 TCTTCGTCCCTGTTGCAAAT 57.730 45.000 0.00 0.00 0.00 2.32
4013 4896 2.955660 TCTTCGTCCCTGTTGCAAATTT 59.044 40.909 0.00 0.00 0.00 1.82
4014 4897 2.791383 TCGTCCCTGTTGCAAATTTG 57.209 45.000 14.03 14.03 0.00 2.32
4026 4909 4.722203 TGCAAATTTGTTAACAATGCCG 57.278 36.364 29.11 17.74 38.12 5.69
4038 4921 4.419522 AACAATGCCGTAACATGAGTTC 57.580 40.909 0.00 0.00 39.15 3.01
4050 4933 4.942761 ACATGAGTTCTGGTTGCAATTT 57.057 36.364 0.59 0.00 0.00 1.82
4051 4934 6.403866 AACATGAGTTCTGGTTGCAATTTA 57.596 33.333 0.59 0.00 30.46 1.40
4052 4935 6.017400 ACATGAGTTCTGGTTGCAATTTAG 57.983 37.500 0.59 1.67 0.00 1.85
4053 4936 5.536161 ACATGAGTTCTGGTTGCAATTTAGT 59.464 36.000 0.59 0.00 0.00 2.24
4054 4937 5.437289 TGAGTTCTGGTTGCAATTTAGTG 57.563 39.130 0.59 0.00 0.00 2.74
4055 4938 4.229876 GAGTTCTGGTTGCAATTTAGTGC 58.770 43.478 0.59 0.00 45.15 4.40
4069 4961 7.130917 GCAATTTAGTGCATACAGAAGATGAG 58.869 38.462 0.00 0.00 44.29 2.90
4082 4974 5.174395 CAGAAGATGAGTTGTAGTTCCAGG 58.826 45.833 0.00 0.00 0.00 4.45
4083 4975 3.618690 AGATGAGTTGTAGTTCCAGGC 57.381 47.619 0.00 0.00 0.00 4.85
4089 4981 0.400213 TTGTAGTTCCAGGCACCCAG 59.600 55.000 0.00 0.00 0.00 4.45
4103 4996 3.561313 GGCACCCAGAAACCTTGATCTTA 60.561 47.826 0.00 0.00 0.00 2.10
4108 5001 6.209391 CACCCAGAAACCTTGATCTTATTTGT 59.791 38.462 0.00 0.00 0.00 2.83
4115 5008 9.313118 GAAACCTTGATCTTATTTGTTTGTTGT 57.687 29.630 0.00 0.00 0.00 3.32
4137 5030 9.556030 GTTGTAGAAAAACAATGTAAGATAGGC 57.444 33.333 0.00 0.00 41.18 3.93
4138 5031 8.856153 TGTAGAAAAACAATGTAAGATAGGCA 57.144 30.769 0.00 0.00 0.00 4.75
4139 5032 8.726988 TGTAGAAAAACAATGTAAGATAGGCAC 58.273 33.333 0.00 0.00 0.00 5.01
4140 5033 8.947115 GTAGAAAAACAATGTAAGATAGGCACT 58.053 33.333 0.00 0.00 46.37 4.40
4141 5034 8.409358 AGAAAAACAATGTAAGATAGGCACTT 57.591 30.769 0.00 0.00 41.75 3.16
4142 5035 8.860088 AGAAAAACAATGTAAGATAGGCACTTT 58.140 29.630 0.00 0.00 41.75 2.66
4143 5036 9.476202 GAAAAACAATGTAAGATAGGCACTTTT 57.524 29.630 0.00 0.00 41.75 2.27
4144 5037 9.476202 AAAAACAATGTAAGATAGGCACTTTTC 57.524 29.630 0.00 0.00 41.75 2.29
4145 5038 6.759497 ACAATGTAAGATAGGCACTTTTCC 57.241 37.500 0.00 0.00 41.75 3.13
4146 5039 6.485171 ACAATGTAAGATAGGCACTTTTCCT 58.515 36.000 0.00 0.00 41.75 3.36
4147 5040 7.630082 ACAATGTAAGATAGGCACTTTTCCTA 58.370 34.615 0.00 0.00 41.75 2.94
4148 5041 7.553044 ACAATGTAAGATAGGCACTTTTCCTAC 59.447 37.037 0.00 0.00 41.75 3.18
4149 5042 6.614694 TGTAAGATAGGCACTTTTCCTACA 57.385 37.500 0.00 0.00 41.75 2.74
4150 5043 7.195374 TGTAAGATAGGCACTTTTCCTACAT 57.805 36.000 0.00 0.00 41.75 2.29
4151 5044 7.047891 TGTAAGATAGGCACTTTTCCTACATG 58.952 38.462 0.00 0.00 41.75 3.21
4152 5045 5.957771 AGATAGGCACTTTTCCTACATGA 57.042 39.130 0.00 0.00 41.75 3.07
4153 5046 5.675538 AGATAGGCACTTTTCCTACATGAC 58.324 41.667 0.00 0.00 41.75 3.06
4154 5047 2.699954 AGGCACTTTTCCTACATGACG 58.300 47.619 0.00 0.00 27.25 4.35
4155 5048 1.130561 GGCACTTTTCCTACATGACGC 59.869 52.381 0.00 0.00 0.00 5.19
4156 5049 1.201921 GCACTTTTCCTACATGACGCG 60.202 52.381 3.53 3.53 0.00 6.01
4157 5050 2.066262 CACTTTTCCTACATGACGCGT 58.934 47.619 13.85 13.85 0.00 6.01
4158 5051 2.066262 ACTTTTCCTACATGACGCGTG 58.934 47.619 20.70 4.68 0.00 5.34
4159 5052 2.066262 CTTTTCCTACATGACGCGTGT 58.934 47.619 20.70 11.93 37.38 4.49
4160 5053 1.424403 TTTCCTACATGACGCGTGTG 58.576 50.000 20.70 18.30 35.12 3.82
4161 5054 1.011968 TTCCTACATGACGCGTGTGC 61.012 55.000 20.70 1.97 35.12 4.57
4162 5055 1.446099 CCTACATGACGCGTGTGCT 60.446 57.895 20.70 8.76 39.65 4.40
4163 5056 1.014044 CCTACATGACGCGTGTGCTT 61.014 55.000 20.70 2.95 39.65 3.91
4164 5057 0.790207 CTACATGACGCGTGTGCTTT 59.210 50.000 20.70 2.18 39.65 3.51
4165 5058 1.194547 CTACATGACGCGTGTGCTTTT 59.805 47.619 20.70 1.80 39.65 2.27
4166 5059 0.380378 ACATGACGCGTGTGCTTTTT 59.620 45.000 20.70 0.00 39.65 1.94
4167 5060 1.044725 CATGACGCGTGTGCTTTTTC 58.955 50.000 20.70 0.00 39.65 2.29
4168 5061 0.944386 ATGACGCGTGTGCTTTTTCT 59.056 45.000 20.70 0.00 39.65 2.52
4169 5062 0.730265 TGACGCGTGTGCTTTTTCTT 59.270 45.000 20.70 0.00 39.65 2.52
4170 5063 1.131504 TGACGCGTGTGCTTTTTCTTT 59.868 42.857 20.70 0.00 39.65 2.52
4171 5064 1.512771 GACGCGTGTGCTTTTTCTTTG 59.487 47.619 20.70 0.00 39.65 2.77
4172 5065 0.226984 CGCGTGTGCTTTTTCTTTGC 59.773 50.000 0.00 0.00 39.65 3.68
4173 5066 1.559831 GCGTGTGCTTTTTCTTTGCT 58.440 45.000 0.00 0.00 38.39 3.91
4174 5067 1.926510 GCGTGTGCTTTTTCTTTGCTT 59.073 42.857 0.00 0.00 38.39 3.91
4175 5068 2.348362 GCGTGTGCTTTTTCTTTGCTTT 59.652 40.909 0.00 0.00 38.39 3.51
4176 5069 3.181521 GCGTGTGCTTTTTCTTTGCTTTT 60.182 39.130 0.00 0.00 38.39 2.27
4177 5070 4.032331 GCGTGTGCTTTTTCTTTGCTTTTA 59.968 37.500 0.00 0.00 38.39 1.52
4178 5071 5.445275 GCGTGTGCTTTTTCTTTGCTTTTAA 60.445 36.000 0.00 0.00 38.39 1.52
4179 5072 6.529696 CGTGTGCTTTTTCTTTGCTTTTAAA 58.470 32.000 0.00 0.00 0.00 1.52
4180 5073 7.179410 CGTGTGCTTTTTCTTTGCTTTTAAAT 58.821 30.769 0.00 0.00 0.00 1.40
4181 5074 7.370576 CGTGTGCTTTTTCTTTGCTTTTAAATC 59.629 33.333 0.00 0.00 0.00 2.17
4182 5075 8.174422 GTGTGCTTTTTCTTTGCTTTTAAATCA 58.826 29.630 0.00 0.00 0.00 2.57
4183 5076 8.891720 TGTGCTTTTTCTTTGCTTTTAAATCAT 58.108 25.926 0.00 0.00 0.00 2.45
4184 5077 9.161684 GTGCTTTTTCTTTGCTTTTAAATCATG 57.838 29.630 0.00 0.00 0.00 3.07
4185 5078 8.891720 TGCTTTTTCTTTGCTTTTAAATCATGT 58.108 25.926 0.00 0.00 0.00 3.21
4189 5082 8.532977 TTTCTTTGCTTTTAAATCATGTAGGC 57.467 30.769 0.00 0.00 0.00 3.93
4190 5083 7.225784 TCTTTGCTTTTAAATCATGTAGGCA 57.774 32.000 0.00 0.00 0.00 4.75
4191 5084 7.665690 TCTTTGCTTTTAAATCATGTAGGCAA 58.334 30.769 0.00 0.00 35.77 4.52
4192 5085 7.814107 TCTTTGCTTTTAAATCATGTAGGCAAG 59.186 33.333 0.00 0.00 38.18 4.01
4193 5086 5.964758 TGCTTTTAAATCATGTAGGCAAGG 58.035 37.500 0.00 0.00 0.00 3.61
4194 5087 5.480073 TGCTTTTAAATCATGTAGGCAAGGT 59.520 36.000 0.00 0.00 0.00 3.50
4195 5088 5.807011 GCTTTTAAATCATGTAGGCAAGGTG 59.193 40.000 0.00 0.00 0.00 4.00
4196 5089 4.981806 TTAAATCATGTAGGCAAGGTGC 57.018 40.909 0.00 0.00 44.08 5.01
4222 5115 4.092675 GCTGGAATCTTGCGCTAGATATTC 59.907 45.833 29.88 24.49 33.81 1.75
4224 5117 6.590234 TGGAATCTTGCGCTAGATATTCTA 57.410 37.500 29.88 21.32 33.81 2.10
4294 5189 2.443887 GGTGATGTGCAGCAAACATT 57.556 45.000 0.00 0.00 44.31 2.71
4299 5194 1.937278 TGTGCAGCAAACATTGTTGG 58.063 45.000 2.13 0.54 41.49 3.77
4417 5312 0.249868 CTGAGTTTCCACGCTCCACA 60.250 55.000 0.00 0.00 0.00 4.17
4486 5381 2.879103 TTGGGAACTTCAGGTGATCC 57.121 50.000 0.00 0.00 0.00 3.36
4489 5384 2.040278 TGGGAACTTCAGGTGATCCTTG 59.960 50.000 0.00 0.00 43.07 3.61
4510 5405 4.439057 TGTTCAGGGTTGTATATTCTCGC 58.561 43.478 0.00 0.00 0.00 5.03
4519 5414 5.465724 GGTTGTATATTCTCGCTTACCTTGG 59.534 44.000 0.00 0.00 0.00 3.61
4529 5424 1.304879 TTACCTTGGGTGGGCATGC 60.305 57.895 9.90 9.90 36.19 4.06
4533 5428 3.267233 TTGGGTGGGCATGCCTCT 61.267 61.111 34.70 0.00 36.10 3.69
4548 5443 1.522569 CTCTCCATCCGTGGTTCCC 59.477 63.158 0.00 0.00 46.16 3.97
4565 5460 2.514803 TCCCGCGATATCTGATTCTGA 58.485 47.619 8.23 0.00 0.00 3.27
4569 5464 4.104066 CCGCGATATCTGATTCTGATCTG 58.896 47.826 8.23 0.00 33.28 2.90
4570 5465 4.380339 CCGCGATATCTGATTCTGATCTGT 60.380 45.833 8.23 0.00 34.08 3.41
4571 5466 5.159925 CGCGATATCTGATTCTGATCTGTT 58.840 41.667 0.00 0.00 34.08 3.16
4572 5467 5.060693 CGCGATATCTGATTCTGATCTGTTG 59.939 44.000 0.00 3.85 34.08 3.33
4573 5468 5.163972 GCGATATCTGATTCTGATCTGTTGC 60.164 44.000 9.08 8.76 34.08 4.17
4574 5469 5.060693 CGATATCTGATTCTGATCTGTTGCG 59.939 44.000 9.08 3.47 34.08 4.85
4575 5470 2.274437 TCTGATTCTGATCTGTTGCGC 58.726 47.619 0.00 0.00 34.08 6.09
4576 5471 2.004733 CTGATTCTGATCTGTTGCGCA 58.995 47.619 5.66 5.66 33.28 6.09
4577 5472 2.612672 CTGATTCTGATCTGTTGCGCAT 59.387 45.455 12.75 0.00 33.28 4.73
4578 5473 2.610833 TGATTCTGATCTGTTGCGCATC 59.389 45.455 12.75 12.06 33.28 3.91
4579 5474 2.391616 TTCTGATCTGTTGCGCATCT 57.608 45.000 12.75 0.00 0.00 2.90
4580 5475 1.931906 TCTGATCTGTTGCGCATCTC 58.068 50.000 12.75 5.02 0.00 2.75
4581 5476 1.479730 TCTGATCTGTTGCGCATCTCT 59.520 47.619 12.75 0.00 0.00 3.10
4582 5477 2.689983 TCTGATCTGTTGCGCATCTCTA 59.310 45.455 12.75 0.37 0.00 2.43
4583 5478 2.793790 CTGATCTGTTGCGCATCTCTAC 59.206 50.000 12.75 6.56 0.00 2.59
4584 5479 2.166254 TGATCTGTTGCGCATCTCTACA 59.834 45.455 12.75 11.74 0.00 2.74
4585 5480 2.967599 TCTGTTGCGCATCTCTACAT 57.032 45.000 12.75 0.00 0.00 2.29
4586 5481 3.251479 TCTGTTGCGCATCTCTACATT 57.749 42.857 12.75 0.00 0.00 2.71
4587 5482 3.599343 TCTGTTGCGCATCTCTACATTT 58.401 40.909 12.75 0.00 0.00 2.32
4588 5483 4.002982 TCTGTTGCGCATCTCTACATTTT 58.997 39.130 12.75 0.00 0.00 1.82
4589 5484 4.455533 TCTGTTGCGCATCTCTACATTTTT 59.544 37.500 12.75 0.00 0.00 1.94
4590 5485 4.475028 TGTTGCGCATCTCTACATTTTTG 58.525 39.130 12.75 0.00 0.00 2.44
4591 5486 3.135414 TGCGCATCTCTACATTTTTGC 57.865 42.857 5.66 0.00 0.00 3.68
4592 5487 2.487372 TGCGCATCTCTACATTTTTGCA 59.513 40.909 5.66 0.00 0.00 4.08
4593 5488 2.848302 GCGCATCTCTACATTTTTGCAC 59.152 45.455 0.30 0.00 0.00 4.57
4594 5489 3.429085 CGCATCTCTACATTTTTGCACC 58.571 45.455 0.00 0.00 0.00 5.01
4595 5490 3.127548 CGCATCTCTACATTTTTGCACCT 59.872 43.478 0.00 0.00 0.00 4.00
4596 5491 4.418392 GCATCTCTACATTTTTGCACCTG 58.582 43.478 0.00 0.00 0.00 4.00
4597 5492 4.156556 GCATCTCTACATTTTTGCACCTGA 59.843 41.667 0.00 0.00 0.00 3.86
4598 5493 5.335897 GCATCTCTACATTTTTGCACCTGAA 60.336 40.000 0.00 0.00 0.00 3.02
4599 5494 5.689383 TCTCTACATTTTTGCACCTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
4600 5495 5.129634 TCTCTACATTTTTGCACCTGAACA 58.870 37.500 0.00 0.00 0.00 3.18
4601 5496 5.769662 TCTCTACATTTTTGCACCTGAACAT 59.230 36.000 0.00 0.00 0.00 2.71
4602 5497 5.771469 TCTACATTTTTGCACCTGAACATG 58.229 37.500 0.00 0.00 0.00 3.21
4603 5498 4.405116 ACATTTTTGCACCTGAACATGT 57.595 36.364 0.00 0.00 0.00 3.21
4604 5499 5.528043 ACATTTTTGCACCTGAACATGTA 57.472 34.783 0.00 0.00 0.00 2.29
4605 5500 5.288804 ACATTTTTGCACCTGAACATGTAC 58.711 37.500 0.00 0.00 0.00 2.90
4606 5501 4.314740 TTTTTGCACCTGAACATGTACC 57.685 40.909 0.00 0.00 0.00 3.34
4607 5502 2.949177 TTGCACCTGAACATGTACCT 57.051 45.000 0.00 0.00 0.00 3.08
4608 5503 2.949177 TGCACCTGAACATGTACCTT 57.051 45.000 0.00 0.00 0.00 3.50
4609 5504 3.222173 TGCACCTGAACATGTACCTTT 57.778 42.857 0.00 0.00 0.00 3.11
4610 5505 3.561143 TGCACCTGAACATGTACCTTTT 58.439 40.909 0.00 0.00 0.00 2.27
4611 5506 3.957497 TGCACCTGAACATGTACCTTTTT 59.043 39.130 0.00 0.00 0.00 1.94
4612 5507 4.037446 TGCACCTGAACATGTACCTTTTTC 59.963 41.667 0.00 0.00 0.00 2.29
4613 5508 4.278419 GCACCTGAACATGTACCTTTTTCT 59.722 41.667 0.00 0.00 0.00 2.52
4614 5509 5.221244 GCACCTGAACATGTACCTTTTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
4615 5510 6.682861 GCACCTGAACATGTACCTTTTTCTTT 60.683 38.462 0.00 0.00 0.00 2.52
4616 5511 7.264947 CACCTGAACATGTACCTTTTTCTTTT 58.735 34.615 0.00 0.00 0.00 2.27
4617 5512 7.435192 CACCTGAACATGTACCTTTTTCTTTTC 59.565 37.037 0.00 0.00 0.00 2.29
4618 5513 6.636850 CCTGAACATGTACCTTTTTCTTTTCG 59.363 38.462 0.00 0.00 0.00 3.46
4619 5514 7.323049 TGAACATGTACCTTTTTCTTTTCGA 57.677 32.000 0.00 0.00 0.00 3.71
4620 5515 7.414436 TGAACATGTACCTTTTTCTTTTCGAG 58.586 34.615 0.00 0.00 0.00 4.04
4621 5516 6.313744 ACATGTACCTTTTTCTTTTCGAGG 57.686 37.500 0.00 0.00 0.00 4.63
4622 5517 5.826208 ACATGTACCTTTTTCTTTTCGAGGT 59.174 36.000 0.00 0.00 42.93 3.85
4623 5518 6.993902 ACATGTACCTTTTTCTTTTCGAGGTA 59.006 34.615 0.00 0.00 40.90 3.08
4624 5519 7.664318 ACATGTACCTTTTTCTTTTCGAGGTAT 59.336 33.333 0.00 0.00 42.91 2.73
4625 5520 7.429636 TGTACCTTTTTCTTTTCGAGGTATG 57.570 36.000 4.10 0.00 42.91 2.39
4626 5521 5.959618 ACCTTTTTCTTTTCGAGGTATGG 57.040 39.130 0.00 0.00 38.88 2.74
4627 5522 5.627135 ACCTTTTTCTTTTCGAGGTATGGA 58.373 37.500 0.00 0.00 38.88 3.41
4628 5523 5.472478 ACCTTTTTCTTTTCGAGGTATGGAC 59.528 40.000 0.00 0.00 38.88 4.02
4629 5524 5.472137 CCTTTTTCTTTTCGAGGTATGGACA 59.528 40.000 0.00 0.00 0.00 4.02
4630 5525 6.151144 CCTTTTTCTTTTCGAGGTATGGACAT 59.849 38.462 0.00 0.00 0.00 3.06
4631 5526 6.494893 TTTTCTTTTCGAGGTATGGACATG 57.505 37.500 0.00 0.00 0.00 3.21
4632 5527 4.819105 TCTTTTCGAGGTATGGACATGT 57.181 40.909 0.00 0.00 0.00 3.21
4633 5528 5.925506 TCTTTTCGAGGTATGGACATGTA 57.074 39.130 0.00 0.00 0.00 2.29
4634 5529 6.479972 TCTTTTCGAGGTATGGACATGTAT 57.520 37.500 0.00 0.00 0.00 2.29
4635 5530 7.591421 TCTTTTCGAGGTATGGACATGTATA 57.409 36.000 0.00 0.00 0.00 1.47
4636 5531 7.431249 TCTTTTCGAGGTATGGACATGTATAC 58.569 38.462 0.00 4.18 0.00 1.47
4699 5594 3.326747 AGAAACACCTGTAATCTGCGTC 58.673 45.455 0.00 0.00 0.00 5.19
4700 5595 2.094762 AACACCTGTAATCTGCGTCC 57.905 50.000 0.00 0.00 0.00 4.79
4721 7591 7.247728 CGTCCTAGAGATGCTACTATGATTTC 58.752 42.308 0.00 0.00 0.00 2.17
4786 7658 8.616076 GGATAAACTAAAGTGATGGTCAGAATG 58.384 37.037 0.00 0.00 37.54 2.67
4789 7661 5.248640 ACTAAAGTGATGGTCAGAATGGTG 58.751 41.667 0.00 0.00 36.16 4.17
4790 7662 2.119801 AGTGATGGTCAGAATGGTGC 57.880 50.000 0.00 0.00 36.16 5.01
4791 7663 1.352017 AGTGATGGTCAGAATGGTGCA 59.648 47.619 0.00 0.00 36.16 4.57
4792 7664 2.161855 GTGATGGTCAGAATGGTGCAA 58.838 47.619 0.00 0.00 36.16 4.08
4793 7665 2.163010 GTGATGGTCAGAATGGTGCAAG 59.837 50.000 0.00 0.00 36.16 4.01
4794 7666 1.747355 GATGGTCAGAATGGTGCAAGG 59.253 52.381 0.00 0.00 36.16 3.61
4795 7667 0.478072 TGGTCAGAATGGTGCAAGGT 59.522 50.000 0.00 0.00 36.16 3.50
4796 7668 0.883833 GGTCAGAATGGTGCAAGGTG 59.116 55.000 0.00 0.00 36.16 4.00
4797 7669 0.883833 GTCAGAATGGTGCAAGGTGG 59.116 55.000 0.00 0.00 36.16 4.61
4798 7670 0.895100 TCAGAATGGTGCAAGGTGGC 60.895 55.000 0.00 0.00 36.16 5.01
4799 7671 0.896940 CAGAATGGTGCAAGGTGGCT 60.897 55.000 0.00 0.00 34.04 4.75
4800 7672 0.610232 AGAATGGTGCAAGGTGGCTC 60.610 55.000 0.00 0.00 34.04 4.70
4801 7673 1.926511 GAATGGTGCAAGGTGGCTCG 61.927 60.000 0.00 0.00 34.04 5.03
4802 7674 2.697147 AATGGTGCAAGGTGGCTCGT 62.697 55.000 0.00 0.00 34.04 4.18
4803 7675 2.594592 GGTGCAAGGTGGCTCGTT 60.595 61.111 0.00 0.00 34.04 3.85
4804 7676 2.617274 GGTGCAAGGTGGCTCGTTC 61.617 63.158 0.00 0.00 34.04 3.95
4805 7677 1.598130 GTGCAAGGTGGCTCGTTCT 60.598 57.895 0.00 0.00 34.04 3.01
4806 7678 1.148273 TGCAAGGTGGCTCGTTCTT 59.852 52.632 0.00 0.00 34.04 2.52
4807 7679 1.165907 TGCAAGGTGGCTCGTTCTTG 61.166 55.000 0.00 0.00 39.46 3.02
4808 7680 1.576421 CAAGGTGGCTCGTTCTTGC 59.424 57.895 0.00 0.00 31.73 4.01
4813 7685 3.119096 GGCTCGTTCTTGCCCGTC 61.119 66.667 0.00 0.00 43.11 4.79
4814 7686 3.119096 GCTCGTTCTTGCCCGTCC 61.119 66.667 0.00 0.00 0.00 4.79
4815 7687 2.809601 CTCGTTCTTGCCCGTCCG 60.810 66.667 0.00 0.00 0.00 4.79
4816 7688 3.569049 CTCGTTCTTGCCCGTCCGT 62.569 63.158 0.00 0.00 0.00 4.69
4817 7689 3.411351 CGTTCTTGCCCGTCCGTG 61.411 66.667 0.00 0.00 0.00 4.94
4818 7690 3.723348 GTTCTTGCCCGTCCGTGC 61.723 66.667 0.00 0.00 0.00 5.34
4857 7729 2.910688 TTTATGGAGGGATCACTCGC 57.089 50.000 18.70 12.02 38.39 5.03
4858 7730 1.788229 TTATGGAGGGATCACTCGCA 58.212 50.000 18.70 16.99 38.39 5.10
4859 7731 1.788229 TATGGAGGGATCACTCGCAA 58.212 50.000 18.70 7.45 38.39 4.85
4860 7732 0.911769 ATGGAGGGATCACTCGCAAA 59.088 50.000 18.70 4.93 38.39 3.68
4861 7733 0.911769 TGGAGGGATCACTCGCAAAT 59.088 50.000 18.70 0.00 38.39 2.32
4862 7734 1.303309 GGAGGGATCACTCGCAAATG 58.697 55.000 18.70 0.00 38.39 2.32
4863 7735 0.659957 GAGGGATCACTCGCAAATGC 59.340 55.000 9.74 0.00 36.82 3.56
4873 7745 4.243383 GCAAATGCGGGTTGACAC 57.757 55.556 0.00 0.00 0.00 3.67
4874 7746 1.361993 GCAAATGCGGGTTGACACA 59.638 52.632 0.00 0.00 0.00 3.72
4875 7747 0.939106 GCAAATGCGGGTTGACACAC 60.939 55.000 0.00 0.00 0.00 3.82
4876 7748 0.318614 CAAATGCGGGTTGACACACC 60.319 55.000 0.00 0.00 35.88 4.16
4882 7754 4.058797 GGTTGACACACCCTTCGG 57.941 61.111 0.00 0.00 0.00 4.30
4883 7755 2.258726 GGTTGACACACCCTTCGGC 61.259 63.158 0.00 0.00 0.00 5.54
4884 7756 2.280524 TTGACACACCCTTCGGCG 60.281 61.111 0.00 0.00 0.00 6.46
4885 7757 2.798364 TTGACACACCCTTCGGCGA 61.798 57.895 4.99 4.99 0.00 5.54
4886 7758 2.432628 GACACACCCTTCGGCGAG 60.433 66.667 10.46 0.54 0.00 5.03
4887 7759 3.934391 GACACACCCTTCGGCGAGG 62.934 68.421 12.54 12.54 36.52 4.63
4888 7760 3.691342 CACACCCTTCGGCGAGGA 61.691 66.667 21.33 0.00 39.25 3.71
4889 7761 2.920912 ACACCCTTCGGCGAGGAA 60.921 61.111 21.33 0.00 39.25 3.36
4890 7762 2.345991 CACCCTTCGGCGAGGAAA 59.654 61.111 21.33 0.00 39.25 3.13
4891 7763 1.302192 CACCCTTCGGCGAGGAAAA 60.302 57.895 21.33 0.00 39.25 2.29
4892 7764 0.676782 CACCCTTCGGCGAGGAAAAT 60.677 55.000 21.33 0.00 39.25 1.82
4893 7765 0.906775 ACCCTTCGGCGAGGAAAATA 59.093 50.000 21.33 0.00 39.25 1.40
4894 7766 1.489230 ACCCTTCGGCGAGGAAAATAT 59.511 47.619 21.33 0.00 39.25 1.28
4895 7767 1.873591 CCCTTCGGCGAGGAAAATATG 59.126 52.381 21.33 1.33 39.25 1.78
4896 7768 1.873591 CCTTCGGCGAGGAAAATATGG 59.126 52.381 21.33 0.00 39.25 2.74
4897 7769 1.873591 CTTCGGCGAGGAAAATATGGG 59.126 52.381 14.40 0.00 0.00 4.00
4898 7770 0.534203 TCGGCGAGGAAAATATGGGC 60.534 55.000 4.99 0.00 0.00 5.36
4899 7771 0.817634 CGGCGAGGAAAATATGGGCA 60.818 55.000 0.00 0.00 0.00 5.36
4900 7772 0.954452 GGCGAGGAAAATATGGGCAG 59.046 55.000 0.00 0.00 0.00 4.85
4901 7773 0.312102 GCGAGGAAAATATGGGCAGC 59.688 55.000 0.00 0.00 0.00 5.25
4902 7774 0.588252 CGAGGAAAATATGGGCAGCG 59.412 55.000 0.00 0.00 0.00 5.18
4903 7775 1.810031 CGAGGAAAATATGGGCAGCGA 60.810 52.381 0.00 0.00 0.00 4.93
4904 7776 2.508526 GAGGAAAATATGGGCAGCGAT 58.491 47.619 0.00 0.00 0.00 4.58
4905 7777 2.227388 GAGGAAAATATGGGCAGCGATG 59.773 50.000 0.00 0.00 0.00 3.84
4906 7778 1.956477 GGAAAATATGGGCAGCGATGT 59.044 47.619 1.22 0.00 0.00 3.06
4907 7779 3.146066 GGAAAATATGGGCAGCGATGTA 58.854 45.455 1.22 0.00 0.00 2.29
4908 7780 3.058224 GGAAAATATGGGCAGCGATGTAC 60.058 47.826 1.22 0.00 0.00 2.90
4909 7781 3.492102 AAATATGGGCAGCGATGTACT 57.508 42.857 1.22 0.00 0.00 2.73
4910 7782 4.617253 AAATATGGGCAGCGATGTACTA 57.383 40.909 1.22 0.00 0.00 1.82
4911 7783 3.876274 ATATGGGCAGCGATGTACTAG 57.124 47.619 1.22 0.00 0.00 2.57
4912 7784 0.034059 ATGGGCAGCGATGTACTAGC 59.966 55.000 1.22 0.00 0.00 3.42
4913 7785 1.043116 TGGGCAGCGATGTACTAGCT 61.043 55.000 1.22 0.00 42.64 3.32
4914 7786 0.319125 GGGCAGCGATGTACTAGCTC 60.319 60.000 1.22 0.00 39.48 4.09
4915 7787 0.319125 GGCAGCGATGTACTAGCTCC 60.319 60.000 1.22 8.18 39.48 4.70
4929 7801 1.551452 AGCTCCACTAGAAGAACGCT 58.449 50.000 0.00 0.00 0.00 5.07
4985 7857 6.112734 AGAGTTCAATATTACGACATTGGCA 58.887 36.000 0.00 0.00 33.77 4.92
5017 7889 4.084011 TCATCAAATCCTCACACACACA 57.916 40.909 0.00 0.00 0.00 3.72
5018 7890 3.814842 TCATCAAATCCTCACACACACAC 59.185 43.478 0.00 0.00 0.00 3.82
5019 7891 3.558931 TCAAATCCTCACACACACACT 57.441 42.857 0.00 0.00 0.00 3.55
5020 7892 3.466836 TCAAATCCTCACACACACACTC 58.533 45.455 0.00 0.00 0.00 3.51
5086 7963 2.508300 ACACATAGCCTATTTTCCCCGT 59.492 45.455 0.00 0.00 0.00 5.28
5264 8190 3.119029 AGTTTTGCACTGCATCACAAACT 60.119 39.130 19.28 19.28 39.48 2.66
5303 8229 7.549842 TGAAAGCGTTTTTATACAGGTGCTATA 59.450 33.333 0.00 0.00 0.00 1.31
5311 8237 8.967779 TTTTATACAGGTGCTATATACTCCCT 57.032 34.615 0.00 0.00 0.00 4.20
5330 8256 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
5469 8395 7.484035 AGATTAAAATATCTGAAGGTGTCGC 57.516 36.000 0.00 0.00 33.68 5.19
5470 8396 5.712217 TTAAAATATCTGAAGGTGTCGCG 57.288 39.130 0.00 0.00 0.00 5.87
5471 8397 2.225068 AATATCTGAAGGTGTCGCGG 57.775 50.000 6.13 0.00 0.00 6.46
5472 8398 0.389391 ATATCTGAAGGTGTCGCGGG 59.611 55.000 6.13 0.00 0.00 6.13
5473 8399 2.292794 TATCTGAAGGTGTCGCGGGC 62.293 60.000 6.13 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.559668 ACCATGTTCCATTTCAGCAGTG 59.440 45.455 0.00 0.00 0.00 3.66
62 63 2.559668 CACCATGTTCCATTTCAGCAGT 59.440 45.455 0.00 0.00 0.00 4.40
67 68 4.078537 CCTGTACACCATGTTCCATTTCA 58.921 43.478 0.00 0.00 0.00 2.69
130 131 0.615331 GAGGAGAGGGCACAACATCA 59.385 55.000 0.00 0.00 0.00 3.07
138 139 1.158466 TCTTGTGGAGGAGAGGGCA 59.842 57.895 0.00 0.00 0.00 5.36
157 158 2.677003 AAGTTTGACATCGGCGCCG 61.677 57.895 42.13 42.13 41.35 6.46
158 159 1.154225 CAAGTTTGACATCGGCGCC 60.154 57.895 19.07 19.07 0.00 6.53
175 176 2.479560 CGTCGCTACATCATCACCTTCA 60.480 50.000 0.00 0.00 0.00 3.02
426 427 0.669318 TTGTCCCAGCGACGAATCAC 60.669 55.000 0.00 0.00 45.23 3.06
496 499 1.588674 CAGTAACCAAACCTGCACGA 58.411 50.000 0.00 0.00 0.00 4.35
508 511 6.038271 CCAGCTAAATGATTACACCAGTAACC 59.962 42.308 0.00 0.00 42.60 2.85
514 517 6.156256 AGAGTACCAGCTAAATGATTACACCA 59.844 38.462 0.00 0.00 0.00 4.17
518 521 9.896263 GTAGTAGAGTACCAGCTAAATGATTAC 57.104 37.037 0.00 0.00 0.00 1.89
524 527 6.069994 GGGAGTAGTAGAGTACCAGCTAAAT 58.930 44.000 0.00 0.00 30.47 1.40
534 537 8.009513 TCACTATACAGAGGGAGTAGTAGAGTA 58.990 40.741 0.00 0.00 37.03 2.59
635 639 3.535561 ACAGCACCTTTTATCTCCGATG 58.464 45.455 0.00 0.00 0.00 3.84
653 657 2.601763 GACGCGGAAGGTGTAAATACAG 59.398 50.000 12.47 0.00 40.09 2.74
737 747 5.544562 GCCATATTTTCTACTCCCTACTCCT 59.455 44.000 0.00 0.00 0.00 3.69
738 748 5.280062 GGCCATATTTTCTACTCCCTACTCC 60.280 48.000 0.00 0.00 0.00 3.85
739 749 5.280062 GGGCCATATTTTCTACTCCCTACTC 60.280 48.000 4.39 0.00 0.00 2.59
740 750 4.597940 GGGCCATATTTTCTACTCCCTACT 59.402 45.833 4.39 0.00 0.00 2.57
741 751 4.562963 CGGGCCATATTTTCTACTCCCTAC 60.563 50.000 4.39 0.00 0.00 3.18
742 752 3.581332 CGGGCCATATTTTCTACTCCCTA 59.419 47.826 4.39 0.00 0.00 3.53
743 753 2.372172 CGGGCCATATTTTCTACTCCCT 59.628 50.000 4.39 0.00 0.00 4.20
744 754 2.779506 CGGGCCATATTTTCTACTCCC 58.220 52.381 4.39 0.00 0.00 4.30
794 804 1.004277 GTCTACCCATGGGCTTGTTCA 59.996 52.381 31.73 4.84 39.32 3.18
799 809 3.043999 GCCGTCTACCCATGGGCTT 62.044 63.158 31.73 15.31 40.59 4.35
806 816 2.753043 GACTCGGCCGTCTACCCA 60.753 66.667 27.15 1.93 0.00 4.51
810 822 0.743701 GACTCTGACTCGGCCGTCTA 60.744 60.000 27.15 4.62 35.00 2.59
1049 1062 6.151480 TCAAAACGAGAAAACAAAAGTAGGGT 59.849 34.615 0.00 0.00 0.00 4.34
1101 1120 2.561549 AAGCGCGCATGGGGAAAATG 62.562 55.000 35.10 0.00 0.00 2.32
1102 1121 1.034838 TAAGCGCGCATGGGGAAAAT 61.035 50.000 35.10 4.83 0.00 1.82
1206 1229 4.896562 TGAAACACGAATACACGATCAC 57.103 40.909 0.00 0.00 37.03 3.06
1207 1230 5.635700 TGAATGAAACACGAATACACGATCA 59.364 36.000 0.00 0.00 37.03 2.92
1210 1233 6.474819 AATGAATGAAACACGAATACACGA 57.525 33.333 0.00 0.00 37.03 4.35
1211 1234 5.444701 CGAATGAATGAAACACGAATACACG 59.555 40.000 0.00 0.00 39.31 4.49
1212 1235 5.225129 GCGAATGAATGAAACACGAATACAC 59.775 40.000 0.00 0.00 0.00 2.90
1213 1236 5.320723 GCGAATGAATGAAACACGAATACA 58.679 37.500 0.00 0.00 0.00 2.29
1214 1237 4.728608 GGCGAATGAATGAAACACGAATAC 59.271 41.667 0.00 0.00 0.00 1.89
1215 1238 4.634004 AGGCGAATGAATGAAACACGAATA 59.366 37.500 0.00 0.00 0.00 1.75
1216 1239 3.440173 AGGCGAATGAATGAAACACGAAT 59.560 39.130 0.00 0.00 0.00 3.34
1217 1240 2.811431 AGGCGAATGAATGAAACACGAA 59.189 40.909 0.00 0.00 0.00 3.85
1286 1309 4.853924 AATTTCAGGATGGTTGTGACAC 57.146 40.909 0.00 0.00 36.16 3.67
1290 1313 7.656948 ACAACATAAAATTTCAGGATGGTTGTG 59.343 33.333 14.77 0.69 36.16 3.33
1291 1314 7.734942 ACAACATAAAATTTCAGGATGGTTGT 58.265 30.769 0.00 0.00 36.16 3.32
1292 1315 9.139174 GTACAACATAAAATTTCAGGATGGTTG 57.861 33.333 0.00 0.00 36.16 3.77
1294 1317 7.673926 AGGTACAACATAAAATTTCAGGATGGT 59.326 33.333 0.00 0.00 36.16 3.55
1296 1319 8.739039 TCAGGTACAACATAAAATTTCAGGATG 58.261 33.333 0.00 0.00 37.54 3.51
1297 1320 8.877864 TCAGGTACAACATAAAATTTCAGGAT 57.122 30.769 0.00 0.00 0.00 3.24
1298 1321 8.877864 ATCAGGTACAACATAAAATTTCAGGA 57.122 30.769 0.00 0.00 0.00 3.86
1320 1343 1.466866 CGTCGCGTCAAGAACCTATCA 60.467 52.381 5.77 0.00 0.00 2.15
1340 1363 2.511600 CCCCACGGCTCATCGTTC 60.512 66.667 0.00 0.00 41.86 3.95
1385 1408 2.130821 TATTCTTGGTGGCCCGTGCA 62.131 55.000 0.00 0.00 40.13 4.57
1469 1492 5.860182 CGATCAAAATGTGCAGAAAACTCAT 59.140 36.000 0.00 0.00 0.00 2.90
1478 1502 2.413112 ACGACTCGATCAAAATGTGCAG 59.587 45.455 5.20 0.00 0.00 4.41
1604 1633 4.039245 TCCAGAACGGATAATTCCTAGCTG 59.961 45.833 0.00 0.00 39.64 4.24
1629 1682 3.594603 ACATCCTGTCAGTAAGGAACG 57.405 47.619 0.00 0.00 46.76 3.95
1717 1770 3.002791 GCTGTTGTCGATGATTTCCTCA 58.997 45.455 0.00 0.00 38.53 3.86
1726 1779 2.070262 TCTGTGAGCTGTTGTCGATG 57.930 50.000 0.00 0.00 0.00 3.84
1801 1858 5.542635 TCATCAGGGCGAGGTAAATAATACT 59.457 40.000 0.00 0.00 0.00 2.12
1802 1859 5.790593 TCATCAGGGCGAGGTAAATAATAC 58.209 41.667 0.00 0.00 0.00 1.89
1803 1860 6.406370 CATCATCAGGGCGAGGTAAATAATA 58.594 40.000 0.00 0.00 0.00 0.98
1851 1908 1.197721 GGCTCCACAAACTCGAATGTG 59.802 52.381 15.18 15.18 45.06 3.21
1911 1968 2.880268 CACAATGACCAGAACAGCTTCA 59.120 45.455 0.00 0.00 0.00 3.02
2012 2070 6.735678 ATGTTTACATAATGCACGACAAGA 57.264 33.333 0.00 0.00 34.26 3.02
2042 2100 1.372087 GAGATGTGCAGGGAAAGGCG 61.372 60.000 0.00 0.00 0.00 5.52
2076 2137 7.078249 AGTACCTAAACATATGATCCATGCA 57.922 36.000 10.38 0.00 0.00 3.96
2186 2247 1.993701 TTGAACCAGCTGTGCTCCCA 61.994 55.000 13.81 0.00 36.40 4.37
2213 2274 2.094182 GTGTCTATCCTTGAACGAGGCA 60.094 50.000 3.36 0.00 36.71 4.75
2295 2362 7.334421 TGCACTCTTATTAGTAGCTTCTTTTGG 59.666 37.037 0.00 0.00 0.00 3.28
2342 2409 2.027385 GACAATGATTTGGAGCCTCCC 58.973 52.381 8.62 0.00 37.15 4.30
2358 2425 3.960237 GGCACGTGGATTCGACAA 58.040 55.556 18.88 0.00 34.70 3.18
2408 2475 1.138859 TCGTCGCCATCATCCTCATTT 59.861 47.619 0.00 0.00 0.00 2.32
2580 2647 1.202675 GGTACGGTGACAAGGAAACCA 60.203 52.381 0.00 0.00 33.30 3.67
2593 2660 5.425196 AAGTGTATAACAATGGGTACGGT 57.575 39.130 0.00 0.00 0.00 4.83
2626 2694 6.169800 TGATACCAGCATAATAAGCGCATAA 58.830 36.000 11.47 0.00 37.01 1.90
2651 2719 6.986817 GCTAGTCTGGTAAGCAGAATGATAAA 59.013 38.462 0.00 0.00 39.69 1.40
2669 2737 3.586470 TGGCTCTTAGCTAGCTAGTCT 57.414 47.619 23.03 19.44 41.99 3.24
2675 2743 3.867857 AGAACTTTGGCTCTTAGCTAGC 58.132 45.455 6.62 6.62 41.99 3.42
2697 2765 5.502220 CGCCAAACACAAGAAAATTCAAAGG 60.502 40.000 0.00 0.00 0.00 3.11
2698 2766 5.063312 ACGCCAAACACAAGAAAATTCAAAG 59.937 36.000 0.00 0.00 0.00 2.77
2719 2787 1.418342 CGGCACTATGGTGTGTACGC 61.418 60.000 11.18 0.00 44.65 4.42
2720 2788 0.108992 ACGGCACTATGGTGTGTACG 60.109 55.000 11.18 12.28 44.65 3.67
2721 2789 1.636988 GACGGCACTATGGTGTGTAC 58.363 55.000 11.18 0.00 44.65 2.90
2741 2809 8.604890 GTTTGATACTGTCAGTAAGAAATAGCC 58.395 37.037 16.50 4.07 38.29 3.93
2755 2823 5.408356 ACGGTGAGTATGTTTGATACTGTC 58.592 41.667 0.00 0.00 35.20 3.51
2758 2827 5.126545 TGCTACGGTGAGTATGTTTGATACT 59.873 40.000 0.00 0.00 37.53 2.12
2783 3598 4.641989 GGCTCTCAGAAATAATCCAGCAAA 59.358 41.667 0.00 0.00 0.00 3.68
2789 3604 6.118852 AGAACTTGGCTCTCAGAAATAATCC 58.881 40.000 0.00 0.00 0.00 3.01
2798 3613 3.257469 TGCATAGAACTTGGCTCTCAG 57.743 47.619 0.00 0.00 0.00 3.35
2799 3614 3.920231 ATGCATAGAACTTGGCTCTCA 57.080 42.857 0.00 0.00 0.00 3.27
2800 3615 5.356470 AGAAAATGCATAGAACTTGGCTCTC 59.644 40.000 0.00 0.00 0.00 3.20
2801 3616 5.259632 AGAAAATGCATAGAACTTGGCTCT 58.740 37.500 0.00 0.00 0.00 4.09
2834 3652 4.202080 GCCGACAACACTATGGTGAGTATA 60.202 45.833 16.98 0.00 45.61 1.47
2855 3673 6.305638 CGTAAAGCTAAGTGAGAAAAATTGCC 59.694 38.462 0.00 0.00 0.00 4.52
2856 3674 6.856426 ACGTAAAGCTAAGTGAGAAAAATTGC 59.144 34.615 0.00 0.00 0.00 3.56
2859 3677 8.379457 AGAACGTAAAGCTAAGTGAGAAAAAT 57.621 30.769 0.00 0.00 0.00 1.82
2862 3680 7.781548 AAAGAACGTAAAGCTAAGTGAGAAA 57.218 32.000 0.00 0.00 0.00 2.52
2863 3681 7.113965 CGTAAAGAACGTAAAGCTAAGTGAGAA 59.886 37.037 0.00 0.00 46.72 2.87
2864 3682 6.580041 CGTAAAGAACGTAAAGCTAAGTGAGA 59.420 38.462 0.00 0.00 46.72 3.27
2865 3683 6.739561 CGTAAAGAACGTAAAGCTAAGTGAG 58.260 40.000 0.00 0.00 46.72 3.51
2880 3698 2.412089 CAGCACTACCAGCGTAAAGAAC 59.588 50.000 0.00 0.00 37.01 3.01
2881 3699 2.683968 CAGCACTACCAGCGTAAAGAA 58.316 47.619 0.00 0.00 37.01 2.52
2882 3700 1.671850 GCAGCACTACCAGCGTAAAGA 60.672 52.381 0.00 0.00 37.01 2.52
2885 3703 0.389817 CAGCAGCACTACCAGCGTAA 60.390 55.000 0.00 0.00 37.01 3.18
2886 3704 1.215382 CAGCAGCACTACCAGCGTA 59.785 57.895 0.00 0.00 37.01 4.42
2960 3834 0.882042 CACTTGACGTTGCTGCCTCT 60.882 55.000 0.00 0.00 0.00 3.69
3120 3995 5.111293 GCATTGTCCTATCACCATTTTTGG 58.889 41.667 0.00 0.00 0.00 3.28
3526 4401 0.897863 TGAATTTTCAGGTGCGGGGG 60.898 55.000 0.00 0.00 32.50 5.40
3550 4425 0.234884 CAAAGGGTCGAAAGTCGTGC 59.765 55.000 0.00 0.00 41.35 5.34
3554 4429 0.875059 CAGCCAAAGGGTCGAAAGTC 59.125 55.000 0.00 0.00 36.17 3.01
3555 4430 0.537371 CCAGCCAAAGGGTCGAAAGT 60.537 55.000 0.00 0.00 36.17 2.66
3580 4455 2.249844 TCCGTTGAAACTCTTCACCC 57.750 50.000 0.00 0.00 41.34 4.61
3596 4471 3.045601 ACACCAGAAGAGTTTGATCCG 57.954 47.619 0.00 0.00 0.00 4.18
3719 4594 0.039527 CCTTGTGCAACGTAAAGGCC 60.040 55.000 0.00 0.00 42.39 5.19
3730 4605 1.840630 CGTGCGTGATTCCTTGTGCA 61.841 55.000 0.00 0.00 0.00 4.57
3735 4610 1.001633 ACTTACCGTGCGTGATTCCTT 59.998 47.619 0.00 0.00 0.00 3.36
3751 4626 3.448093 TCATGGATTTGGTGGCACTTA 57.552 42.857 18.45 4.22 0.00 2.24
3831 4706 2.833631 TTGACCCGAAAAGTCTCTCC 57.166 50.000 0.00 0.00 35.21 3.71
3832 4707 4.570930 AGATTTGACCCGAAAAGTCTCTC 58.429 43.478 0.00 0.00 35.21 3.20
3847 4722 3.696051 GTCAGCCCAAATGCTAGATTTGA 59.304 43.478 20.22 6.01 40.32 2.69
3922 4801 5.292101 ACAAATAAGTCGTCATTAGCAGAGC 59.708 40.000 0.00 0.00 0.00 4.09
3966 4845 2.485122 GTATTGGCAGCCACGTGC 59.515 61.111 15.89 5.94 43.19 5.34
4011 4894 6.073327 TCATGTTACGGCATTGTTAACAAA 57.927 33.333 23.97 8.78 39.55 2.83
4013 4896 4.757657 ACTCATGTTACGGCATTGTTAACA 59.242 37.500 3.59 3.59 35.49 2.41
4014 4897 5.291293 ACTCATGTTACGGCATTGTTAAC 57.709 39.130 0.00 0.00 0.00 2.01
4026 4909 4.829064 TTGCAACCAGAACTCATGTTAC 57.171 40.909 0.00 0.00 36.39 2.50
4050 4933 6.286240 ACAACTCATCTTCTGTATGCACTA 57.714 37.500 0.00 0.00 0.00 2.74
4051 4934 5.157940 ACAACTCATCTTCTGTATGCACT 57.842 39.130 0.00 0.00 0.00 4.40
4052 4935 6.102663 ACTACAACTCATCTTCTGTATGCAC 58.897 40.000 0.00 0.00 0.00 4.57
4053 4936 6.286240 ACTACAACTCATCTTCTGTATGCA 57.714 37.500 0.00 0.00 0.00 3.96
4054 4937 6.256757 GGAACTACAACTCATCTTCTGTATGC 59.743 42.308 0.00 0.00 0.00 3.14
4055 4938 7.323420 TGGAACTACAACTCATCTTCTGTATG 58.677 38.462 0.00 0.00 0.00 2.39
4056 4939 7.364232 CCTGGAACTACAACTCATCTTCTGTAT 60.364 40.741 0.00 0.00 0.00 2.29
4057 4940 6.071334 CCTGGAACTACAACTCATCTTCTGTA 60.071 42.308 0.00 0.00 0.00 2.74
4058 4941 5.279708 CCTGGAACTACAACTCATCTTCTGT 60.280 44.000 0.00 0.00 0.00 3.41
4059 4942 5.174395 CCTGGAACTACAACTCATCTTCTG 58.826 45.833 0.00 0.00 0.00 3.02
4061 4944 3.935828 GCCTGGAACTACAACTCATCTTC 59.064 47.826 0.00 0.00 0.00 2.87
4062 4945 3.327757 TGCCTGGAACTACAACTCATCTT 59.672 43.478 0.00 0.00 0.00 2.40
4064 4947 3.003480 GTGCCTGGAACTACAACTCATC 58.997 50.000 0.00 0.00 0.00 2.92
4065 4948 2.290323 GGTGCCTGGAACTACAACTCAT 60.290 50.000 4.46 0.00 0.00 2.90
4066 4949 1.071699 GGTGCCTGGAACTACAACTCA 59.928 52.381 4.46 0.00 0.00 3.41
4069 4961 0.109723 TGGGTGCCTGGAACTACAAC 59.890 55.000 4.46 0.00 0.00 3.32
4082 4974 2.206576 AGATCAAGGTTTCTGGGTGC 57.793 50.000 0.00 0.00 0.00 5.01
4083 4975 6.209391 ACAAATAAGATCAAGGTTTCTGGGTG 59.791 38.462 0.00 0.00 0.00 4.61
4089 4981 9.313118 ACAACAAACAAATAAGATCAAGGTTTC 57.687 29.630 0.00 0.00 0.00 2.78
4115 5008 9.515226 AAGTGCCTATCTTACATTGTTTTTCTA 57.485 29.630 0.00 0.00 0.00 2.10
4122 5015 6.485171 AGGAAAAGTGCCTATCTTACATTGT 58.515 36.000 0.00 0.00 32.92 2.71
4136 5029 1.201921 CGCGTCATGTAGGAAAAGTGC 60.202 52.381 0.00 0.00 0.00 4.40
4137 5030 2.066262 ACGCGTCATGTAGGAAAAGTG 58.934 47.619 5.58 0.00 0.00 3.16
4138 5031 2.066262 CACGCGTCATGTAGGAAAAGT 58.934 47.619 9.86 0.00 0.00 2.66
4139 5032 2.066262 ACACGCGTCATGTAGGAAAAG 58.934 47.619 9.86 0.00 0.00 2.27
4140 5033 1.795872 CACACGCGTCATGTAGGAAAA 59.204 47.619 9.86 0.00 0.00 2.29
4141 5034 1.424403 CACACGCGTCATGTAGGAAA 58.576 50.000 9.86 0.00 0.00 3.13
4142 5035 1.011968 GCACACGCGTCATGTAGGAA 61.012 55.000 9.86 0.00 0.00 3.36
4143 5036 1.445410 GCACACGCGTCATGTAGGA 60.445 57.895 9.86 0.00 0.00 2.94
4144 5037 1.014044 AAGCACACGCGTCATGTAGG 61.014 55.000 9.86 0.00 45.49 3.18
4145 5038 0.790207 AAAGCACACGCGTCATGTAG 59.210 50.000 9.86 0.00 45.49 2.74
4146 5039 1.222300 AAAAGCACACGCGTCATGTA 58.778 45.000 9.86 0.00 45.49 2.29
4147 5040 0.380378 AAAAAGCACACGCGTCATGT 59.620 45.000 9.86 0.55 45.49 3.21
4148 5041 1.044725 GAAAAAGCACACGCGTCATG 58.955 50.000 9.86 12.70 45.49 3.07
4149 5042 0.944386 AGAAAAAGCACACGCGTCAT 59.056 45.000 9.86 0.00 45.49 3.06
4150 5043 0.730265 AAGAAAAAGCACACGCGTCA 59.270 45.000 9.86 0.00 45.49 4.35
4151 5044 1.512771 CAAAGAAAAAGCACACGCGTC 59.487 47.619 9.86 0.00 45.49 5.19
4152 5045 1.544686 CAAAGAAAAAGCACACGCGT 58.455 45.000 5.58 5.58 45.49 6.01
4153 5046 0.226984 GCAAAGAAAAAGCACACGCG 59.773 50.000 3.53 3.53 45.49 6.01
4154 5047 1.559831 AGCAAAGAAAAAGCACACGC 58.440 45.000 0.00 0.00 38.99 5.34
4155 5048 4.582441 AAAAGCAAAGAAAAAGCACACG 57.418 36.364 0.00 0.00 0.00 4.49
4156 5049 8.174422 TGATTTAAAAGCAAAGAAAAAGCACAC 58.826 29.630 0.00 0.00 0.00 3.82
4157 5050 8.261492 TGATTTAAAAGCAAAGAAAAAGCACA 57.739 26.923 0.00 0.00 0.00 4.57
4158 5051 9.161684 CATGATTTAAAAGCAAAGAAAAAGCAC 57.838 29.630 0.00 0.00 0.00 4.40
4159 5052 8.891720 ACATGATTTAAAAGCAAAGAAAAAGCA 58.108 25.926 0.00 0.00 0.00 3.91
4163 5056 8.987890 GCCTACATGATTTAAAAGCAAAGAAAA 58.012 29.630 0.00 0.00 0.00 2.29
4164 5057 8.147058 TGCCTACATGATTTAAAAGCAAAGAAA 58.853 29.630 0.00 0.00 0.00 2.52
4165 5058 7.665690 TGCCTACATGATTTAAAAGCAAAGAA 58.334 30.769 0.00 0.00 0.00 2.52
4166 5059 7.225784 TGCCTACATGATTTAAAAGCAAAGA 57.774 32.000 0.00 0.00 0.00 2.52
4167 5060 7.063780 CCTTGCCTACATGATTTAAAAGCAAAG 59.936 37.037 0.00 0.00 37.27 2.77
4168 5061 6.873076 CCTTGCCTACATGATTTAAAAGCAAA 59.127 34.615 0.00 0.00 37.27 3.68
4169 5062 6.014669 ACCTTGCCTACATGATTTAAAAGCAA 60.015 34.615 0.00 2.48 36.39 3.91
4170 5063 5.480073 ACCTTGCCTACATGATTTAAAAGCA 59.520 36.000 0.00 0.00 0.00 3.91
4171 5064 5.807011 CACCTTGCCTACATGATTTAAAAGC 59.193 40.000 0.00 0.00 0.00 3.51
4172 5065 5.807011 GCACCTTGCCTACATGATTTAAAAG 59.193 40.000 0.00 0.00 37.42 2.27
4173 5066 5.719173 GCACCTTGCCTACATGATTTAAAA 58.281 37.500 0.00 0.00 37.42 1.52
4174 5067 5.323371 GCACCTTGCCTACATGATTTAAA 57.677 39.130 0.00 0.00 37.42 1.52
4175 5068 4.981806 GCACCTTGCCTACATGATTTAA 57.018 40.909 0.00 0.00 37.42 1.52
4188 5081 1.941999 GATTCCAGCAGGCACCTTGC 61.942 60.000 0.00 3.73 44.08 4.01
4189 5082 0.323178 AGATTCCAGCAGGCACCTTG 60.323 55.000 0.00 0.00 33.74 3.61
4190 5083 0.407139 AAGATTCCAGCAGGCACCTT 59.593 50.000 0.00 0.00 33.74 3.50
4191 5084 0.323178 CAAGATTCCAGCAGGCACCT 60.323 55.000 0.00 0.00 33.74 4.00
4192 5085 1.941999 GCAAGATTCCAGCAGGCACC 61.942 60.000 0.00 0.00 33.74 5.01
4193 5086 1.509923 GCAAGATTCCAGCAGGCAC 59.490 57.895 0.00 0.00 33.74 5.01
4194 5087 2.042259 CGCAAGATTCCAGCAGGCA 61.042 57.895 0.00 0.00 43.02 4.75
4195 5088 2.796651 CGCAAGATTCCAGCAGGC 59.203 61.111 0.00 0.00 43.02 4.85
4196 5089 0.462581 TAGCGCAAGATTCCAGCAGG 60.463 55.000 11.47 0.00 43.02 4.85
4197 5090 0.935898 CTAGCGCAAGATTCCAGCAG 59.064 55.000 11.47 0.00 43.02 4.24
4198 5091 0.536724 TCTAGCGCAAGATTCCAGCA 59.463 50.000 11.47 0.00 43.02 4.41
4199 5092 1.876322 ATCTAGCGCAAGATTCCAGC 58.124 50.000 11.47 0.00 43.02 4.85
4204 5097 8.060931 TCATCTAGAATATCTAGCGCAAGATT 57.939 34.615 11.47 3.36 44.65 2.40
4222 5115 6.238049 GCTACAGTCAACAAAGCATCATCTAG 60.238 42.308 0.00 0.00 33.38 2.43
4224 5117 4.394300 GCTACAGTCAACAAAGCATCATCT 59.606 41.667 0.00 0.00 33.38 2.90
4225 5118 4.394300 AGCTACAGTCAACAAAGCATCATC 59.606 41.667 0.00 0.00 35.63 2.92
4226 5119 4.330250 AGCTACAGTCAACAAAGCATCAT 58.670 39.130 0.00 0.00 35.63 2.45
4229 5122 5.308825 ACTTAGCTACAGTCAACAAAGCAT 58.691 37.500 0.00 0.00 35.63 3.79
4230 5123 4.703897 ACTTAGCTACAGTCAACAAAGCA 58.296 39.130 0.00 0.00 35.63 3.91
4231 5124 5.163943 GCTACTTAGCTACAGTCAACAAAGC 60.164 44.000 10.58 9.62 45.62 3.51
4232 5125 6.396459 GCTACTTAGCTACAGTCAACAAAG 57.604 41.667 10.58 0.00 45.62 2.77
4257 5150 5.592104 TCACCAAAAGTAGAGCGATCATA 57.408 39.130 2.38 0.00 0.00 2.15
4291 5186 2.165030 GGCATCTGAAGGACCAACAATG 59.835 50.000 0.00 2.49 0.00 2.82
4294 5189 0.321564 CGGCATCTGAAGGACCAACA 60.322 55.000 0.00 0.00 0.00 3.33
4299 5194 2.190578 CCCCGGCATCTGAAGGAC 59.809 66.667 0.00 0.00 0.00 3.85
4397 5292 0.249911 GTGGAGCGTGGAAACTCAGT 60.250 55.000 0.00 0.00 34.48 3.41
4417 5312 1.073897 GCTTTCACCACCTGCTCCT 59.926 57.895 0.00 0.00 0.00 3.69
4486 5381 5.006746 GCGAGAATATACAACCCTGAACAAG 59.993 44.000 0.00 0.00 0.00 3.16
4489 5384 4.694339 AGCGAGAATATACAACCCTGAAC 58.306 43.478 0.00 0.00 0.00 3.18
4510 5405 1.322538 GCATGCCCACCCAAGGTAAG 61.323 60.000 6.36 0.00 32.11 2.34
4519 5414 2.972892 GATGGAGAGGCATGCCCACC 62.973 65.000 33.14 29.51 36.58 4.61
4548 5443 4.731720 ACAGATCAGAATCAGATATCGCG 58.268 43.478 0.00 0.00 34.07 5.87
4565 5460 2.967599 TGTAGAGATGCGCAACAGAT 57.032 45.000 17.11 4.20 0.00 2.90
4569 5464 3.301642 GCAAAAATGTAGAGATGCGCAAC 59.698 43.478 17.11 13.24 0.00 4.17
4570 5465 3.057666 TGCAAAAATGTAGAGATGCGCAA 60.058 39.130 17.11 0.00 36.62 4.85
4571 5466 2.487372 TGCAAAAATGTAGAGATGCGCA 59.513 40.909 14.96 14.96 36.62 6.09
4572 5467 2.848302 GTGCAAAAATGTAGAGATGCGC 59.152 45.455 0.00 0.00 36.62 6.09
4573 5468 3.127548 AGGTGCAAAAATGTAGAGATGCG 59.872 43.478 0.00 0.00 36.62 4.73
4574 5469 4.156556 TCAGGTGCAAAAATGTAGAGATGC 59.843 41.667 0.00 0.00 0.00 3.91
4575 5470 5.885230 TCAGGTGCAAAAATGTAGAGATG 57.115 39.130 0.00 0.00 0.00 2.90
4576 5471 5.769662 TGTTCAGGTGCAAAAATGTAGAGAT 59.230 36.000 0.00 0.00 0.00 2.75
4577 5472 5.129634 TGTTCAGGTGCAAAAATGTAGAGA 58.870 37.500 0.00 0.00 0.00 3.10
4578 5473 5.437289 TGTTCAGGTGCAAAAATGTAGAG 57.563 39.130 0.00 0.00 0.00 2.43
4579 5474 5.301551 ACATGTTCAGGTGCAAAAATGTAGA 59.698 36.000 3.31 0.00 0.00 2.59
4580 5475 5.531634 ACATGTTCAGGTGCAAAAATGTAG 58.468 37.500 3.31 0.00 0.00 2.74
4581 5476 5.528043 ACATGTTCAGGTGCAAAAATGTA 57.472 34.783 3.31 0.00 0.00 2.29
4582 5477 4.405116 ACATGTTCAGGTGCAAAAATGT 57.595 36.364 0.00 0.00 0.00 2.71
4583 5478 4.685628 GGTACATGTTCAGGTGCAAAAATG 59.314 41.667 2.30 0.00 0.00 2.32
4584 5479 4.588528 AGGTACATGTTCAGGTGCAAAAAT 59.411 37.500 2.30 0.00 0.00 1.82
4585 5480 3.957497 AGGTACATGTTCAGGTGCAAAAA 59.043 39.130 2.30 0.00 0.00 1.94
4586 5481 3.561143 AGGTACATGTTCAGGTGCAAAA 58.439 40.909 2.30 0.00 0.00 2.44
4587 5482 3.222173 AGGTACATGTTCAGGTGCAAA 57.778 42.857 2.30 0.00 0.00 3.68
4588 5483 2.949177 AGGTACATGTTCAGGTGCAA 57.051 45.000 2.30 0.00 0.00 4.08
4589 5484 2.949177 AAGGTACATGTTCAGGTGCA 57.051 45.000 2.30 0.00 0.00 4.57
4590 5485 4.278419 AGAAAAAGGTACATGTTCAGGTGC 59.722 41.667 2.30 0.00 0.00 5.01
4591 5486 6.391227 AAGAAAAAGGTACATGTTCAGGTG 57.609 37.500 2.30 0.00 0.00 4.00
4592 5487 7.418337 AAAAGAAAAAGGTACATGTTCAGGT 57.582 32.000 2.30 0.00 0.00 4.00
4593 5488 6.636850 CGAAAAGAAAAAGGTACATGTTCAGG 59.363 38.462 2.30 0.00 0.00 3.86
4594 5489 7.414436 TCGAAAAGAAAAAGGTACATGTTCAG 58.586 34.615 2.30 0.00 0.00 3.02
4595 5490 7.323049 TCGAAAAGAAAAAGGTACATGTTCA 57.677 32.000 2.30 0.00 0.00 3.18
4596 5491 6.856426 CCTCGAAAAGAAAAAGGTACATGTTC 59.144 38.462 2.30 0.00 0.00 3.18
4597 5492 6.320418 ACCTCGAAAAGAAAAAGGTACATGTT 59.680 34.615 2.30 0.00 38.56 2.71
4598 5493 5.826208 ACCTCGAAAAGAAAAAGGTACATGT 59.174 36.000 2.69 2.69 38.56 3.21
4599 5494 6.313744 ACCTCGAAAAGAAAAAGGTACATG 57.686 37.500 0.00 0.00 38.56 3.21
4600 5495 7.120726 CCATACCTCGAAAAGAAAAAGGTACAT 59.879 37.037 1.88 0.00 43.42 2.29
4601 5496 6.428771 CCATACCTCGAAAAGAAAAAGGTACA 59.571 38.462 1.88 0.00 43.42 2.90
4602 5497 6.652062 TCCATACCTCGAAAAGAAAAAGGTAC 59.348 38.462 1.88 0.00 43.42 3.34
4603 5498 6.652062 GTCCATACCTCGAAAAGAAAAAGGTA 59.348 38.462 2.32 2.32 44.41 3.08
4604 5499 5.472478 GTCCATACCTCGAAAAGAAAAAGGT 59.528 40.000 0.00 0.00 42.78 3.50
4605 5500 5.472137 TGTCCATACCTCGAAAAGAAAAAGG 59.528 40.000 0.00 0.00 0.00 3.11
4606 5501 6.554334 TGTCCATACCTCGAAAAGAAAAAG 57.446 37.500 0.00 0.00 0.00 2.27
4607 5502 6.488683 ACATGTCCATACCTCGAAAAGAAAAA 59.511 34.615 0.00 0.00 0.00 1.94
4608 5503 6.001460 ACATGTCCATACCTCGAAAAGAAAA 58.999 36.000 0.00 0.00 0.00 2.29
4609 5504 5.556915 ACATGTCCATACCTCGAAAAGAAA 58.443 37.500 0.00 0.00 0.00 2.52
4610 5505 5.160607 ACATGTCCATACCTCGAAAAGAA 57.839 39.130 0.00 0.00 0.00 2.52
4611 5506 4.819105 ACATGTCCATACCTCGAAAAGA 57.181 40.909 0.00 0.00 0.00 2.52
4612 5507 7.434492 AGTATACATGTCCATACCTCGAAAAG 58.566 38.462 0.00 0.00 0.00 2.27
4613 5508 7.287005 AGAGTATACATGTCCATACCTCGAAAA 59.713 37.037 0.00 0.00 0.00 2.29
4614 5509 6.776116 AGAGTATACATGTCCATACCTCGAAA 59.224 38.462 0.00 0.00 0.00 3.46
4615 5510 6.304624 AGAGTATACATGTCCATACCTCGAA 58.695 40.000 0.00 0.00 0.00 3.71
4616 5511 5.877491 AGAGTATACATGTCCATACCTCGA 58.123 41.667 0.00 0.00 0.00 4.04
4617 5512 6.431543 AGAAGAGTATACATGTCCATACCTCG 59.568 42.308 0.00 0.00 0.00 4.63
4618 5513 7.768807 AGAAGAGTATACATGTCCATACCTC 57.231 40.000 0.00 5.99 0.00 3.85
4619 5514 9.830186 ATAAGAAGAGTATACATGTCCATACCT 57.170 33.333 0.00 3.20 0.00 3.08
4620 5515 9.862371 CATAAGAAGAGTATACATGTCCATACC 57.138 37.037 0.00 0.95 0.00 2.73
4621 5516 9.360093 GCATAAGAAGAGTATACATGTCCATAC 57.640 37.037 0.00 6.12 0.00 2.39
4622 5517 9.088987 TGCATAAGAAGAGTATACATGTCCATA 57.911 33.333 0.00 0.00 0.00 2.74
4623 5518 7.966812 TGCATAAGAAGAGTATACATGTCCAT 58.033 34.615 0.00 0.00 0.00 3.41
4624 5519 7.360113 TGCATAAGAAGAGTATACATGTCCA 57.640 36.000 0.00 0.00 0.00 4.02
4625 5520 8.715998 CATTGCATAAGAAGAGTATACATGTCC 58.284 37.037 0.00 0.00 0.00 4.02
4626 5521 9.481340 TCATTGCATAAGAAGAGTATACATGTC 57.519 33.333 0.00 0.00 0.00 3.06
4654 5549 7.671819 TCTCTAGGACCCAGATTACATCTAATG 59.328 40.741 0.00 0.00 37.58 1.90
4656 5551 7.162973 TCTCTAGGACCCAGATTACATCTAA 57.837 40.000 0.00 0.00 37.58 2.10
4665 5560 3.108376 GGTGTTTCTCTAGGACCCAGAT 58.892 50.000 0.00 0.00 0.00 2.90
4666 5561 2.111972 AGGTGTTTCTCTAGGACCCAGA 59.888 50.000 0.00 0.00 0.00 3.86
4667 5562 2.234908 CAGGTGTTTCTCTAGGACCCAG 59.765 54.545 0.00 0.00 0.00 4.45
4668 5563 2.257207 CAGGTGTTTCTCTAGGACCCA 58.743 52.381 0.00 0.00 0.00 4.51
4669 5564 2.258109 ACAGGTGTTTCTCTAGGACCC 58.742 52.381 0.00 0.00 0.00 4.46
4671 5566 6.334202 CAGATTACAGGTGTTTCTCTAGGAC 58.666 44.000 0.00 0.00 0.00 3.85
4672 5567 5.105310 GCAGATTACAGGTGTTTCTCTAGGA 60.105 44.000 0.00 0.00 0.00 2.94
4673 5568 5.112686 GCAGATTACAGGTGTTTCTCTAGG 58.887 45.833 0.00 0.00 0.00 3.02
4674 5569 4.800993 CGCAGATTACAGGTGTTTCTCTAG 59.199 45.833 0.00 0.00 0.00 2.43
4675 5570 4.219944 ACGCAGATTACAGGTGTTTCTCTA 59.780 41.667 0.00 0.00 0.00 2.43
4676 5571 3.006967 ACGCAGATTACAGGTGTTTCTCT 59.993 43.478 0.00 0.00 0.00 3.10
4677 5572 3.326747 ACGCAGATTACAGGTGTTTCTC 58.673 45.455 0.00 0.00 0.00 2.87
4678 5573 3.326747 GACGCAGATTACAGGTGTTTCT 58.673 45.455 0.00 0.00 0.00 2.52
4679 5574 2.415512 GGACGCAGATTACAGGTGTTTC 59.584 50.000 0.00 0.00 0.00 2.78
4680 5575 2.038557 AGGACGCAGATTACAGGTGTTT 59.961 45.455 0.00 0.00 0.00 2.83
4699 5594 7.151999 ACGAAATCATAGTAGCATCTCTAGG 57.848 40.000 0.00 0.00 0.00 3.02
4732 7602 8.466798 GTCACTGCCCAAAGTATATTAACATTT 58.533 33.333 0.00 0.00 0.00 2.32
4735 7605 6.597672 CAGTCACTGCCCAAAGTATATTAACA 59.402 38.462 0.00 0.00 0.00 2.41
4736 7606 6.038271 CCAGTCACTGCCCAAAGTATATTAAC 59.962 42.308 0.00 0.00 0.00 2.01
4737 7607 6.069905 TCCAGTCACTGCCCAAAGTATATTAA 60.070 38.462 0.00 0.00 0.00 1.40
4738 7608 5.427157 TCCAGTCACTGCCCAAAGTATATTA 59.573 40.000 0.00 0.00 0.00 0.98
4739 7609 4.227300 TCCAGTCACTGCCCAAAGTATATT 59.773 41.667 0.00 0.00 0.00 1.28
4741 7611 3.178046 TCCAGTCACTGCCCAAAGTATA 58.822 45.455 0.00 0.00 0.00 1.47
4750 7622 5.122396 CACTTTAGTTTATCCAGTCACTGCC 59.878 44.000 0.00 0.00 0.00 4.85
4786 7658 2.594592 AACGAGCCACCTTGCACC 60.595 61.111 0.00 0.00 0.00 5.01
4789 7661 1.576421 CAAGAACGAGCCACCTTGC 59.424 57.895 0.00 0.00 31.11 4.01
4790 7662 1.576421 GCAAGAACGAGCCACCTTG 59.424 57.895 0.00 0.00 39.06 3.61
4791 7663 4.065110 GCAAGAACGAGCCACCTT 57.935 55.556 0.00 0.00 0.00 3.50
4797 7669 3.119096 GGACGGGCAAGAACGAGC 61.119 66.667 0.00 0.00 0.00 5.03
4798 7670 2.809601 CGGACGGGCAAGAACGAG 60.810 66.667 0.00 0.00 0.00 4.18
4799 7671 3.608662 ACGGACGGGCAAGAACGA 61.609 61.111 0.00 0.00 0.00 3.85
4800 7672 3.411351 CACGGACGGGCAAGAACG 61.411 66.667 0.00 0.00 0.00 3.95
4801 7673 3.723348 GCACGGACGGGCAAGAAC 61.723 66.667 14.79 0.00 45.30 3.01
4836 7708 3.054728 TGCGAGTGATCCCTCCATAAAAA 60.055 43.478 0.00 0.00 0.00 1.94
4837 7709 2.503765 TGCGAGTGATCCCTCCATAAAA 59.496 45.455 0.00 0.00 0.00 1.52
4838 7710 2.115427 TGCGAGTGATCCCTCCATAAA 58.885 47.619 0.00 0.00 0.00 1.40
4839 7711 1.788229 TGCGAGTGATCCCTCCATAA 58.212 50.000 0.00 0.00 0.00 1.90
4840 7712 1.788229 TTGCGAGTGATCCCTCCATA 58.212 50.000 0.00 0.00 0.00 2.74
4841 7713 0.911769 TTTGCGAGTGATCCCTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
4842 7714 0.911769 ATTTGCGAGTGATCCCTCCA 59.088 50.000 0.00 0.00 0.00 3.86
4843 7715 1.303309 CATTTGCGAGTGATCCCTCC 58.697 55.000 0.00 0.00 0.00 4.30
4844 7716 0.659957 GCATTTGCGAGTGATCCCTC 59.340 55.000 0.00 0.00 0.00 4.30
4845 7717 2.785868 GCATTTGCGAGTGATCCCT 58.214 52.632 0.00 0.00 0.00 4.20
4856 7728 0.939106 GTGTGTCAACCCGCATTTGC 60.939 55.000 0.00 0.00 37.78 3.68
4857 7729 0.318614 GGTGTGTCAACCCGCATTTG 60.319 55.000 0.00 0.00 33.79 2.32
4858 7730 2.037871 GGTGTGTCAACCCGCATTT 58.962 52.632 0.00 0.00 33.79 2.32
4859 7731 3.758172 GGTGTGTCAACCCGCATT 58.242 55.556 0.00 0.00 33.79 3.56
4877 7749 1.873591 CCCATATTTTCCTCGCCGAAG 59.126 52.381 0.00 0.00 0.00 3.79
4878 7750 1.961793 CCCATATTTTCCTCGCCGAA 58.038 50.000 0.00 0.00 0.00 4.30
4879 7751 0.534203 GCCCATATTTTCCTCGCCGA 60.534 55.000 0.00 0.00 0.00 5.54
4880 7752 0.817634 TGCCCATATTTTCCTCGCCG 60.818 55.000 0.00 0.00 0.00 6.46
4881 7753 0.954452 CTGCCCATATTTTCCTCGCC 59.046 55.000 0.00 0.00 0.00 5.54
4882 7754 0.312102 GCTGCCCATATTTTCCTCGC 59.688 55.000 0.00 0.00 0.00 5.03
4883 7755 0.588252 CGCTGCCCATATTTTCCTCG 59.412 55.000 0.00 0.00 0.00 4.63
4884 7756 1.967319 TCGCTGCCCATATTTTCCTC 58.033 50.000 0.00 0.00 0.00 3.71
4885 7757 2.233271 CATCGCTGCCCATATTTTCCT 58.767 47.619 0.00 0.00 0.00 3.36
4886 7758 1.956477 ACATCGCTGCCCATATTTTCC 59.044 47.619 0.00 0.00 0.00 3.13
4887 7759 3.815401 AGTACATCGCTGCCCATATTTTC 59.185 43.478 0.00 0.00 0.00 2.29
4888 7760 3.820557 AGTACATCGCTGCCCATATTTT 58.179 40.909 0.00 0.00 0.00 1.82
4889 7761 3.492102 AGTACATCGCTGCCCATATTT 57.508 42.857 0.00 0.00 0.00 1.40
4890 7762 3.617531 GCTAGTACATCGCTGCCCATATT 60.618 47.826 0.00 0.00 0.00 1.28
4891 7763 2.093973 GCTAGTACATCGCTGCCCATAT 60.094 50.000 0.00 0.00 0.00 1.78
4892 7764 1.272490 GCTAGTACATCGCTGCCCATA 59.728 52.381 0.00 0.00 0.00 2.74
4893 7765 0.034059 GCTAGTACATCGCTGCCCAT 59.966 55.000 0.00 0.00 0.00 4.00
4894 7766 1.043116 AGCTAGTACATCGCTGCCCA 61.043 55.000 0.00 0.00 31.82 5.36
4895 7767 0.319125 GAGCTAGTACATCGCTGCCC 60.319 60.000 8.08 0.00 33.47 5.36
4896 7768 0.319125 GGAGCTAGTACATCGCTGCC 60.319 60.000 8.08 6.20 36.31 4.85
4897 7769 0.385751 TGGAGCTAGTACATCGCTGC 59.614 55.000 13.09 13.09 41.68 5.25
4898 7770 1.678627 AGTGGAGCTAGTACATCGCTG 59.321 52.381 8.08 0.00 33.47 5.18
4899 7771 2.060050 AGTGGAGCTAGTACATCGCT 57.940 50.000 0.00 0.00 36.57 4.93
4900 7772 3.139850 TCTAGTGGAGCTAGTACATCGC 58.860 50.000 0.00 0.00 45.65 4.58
4901 7773 5.057819 TCTTCTAGTGGAGCTAGTACATCG 58.942 45.833 0.00 0.00 45.65 3.84
4902 7774 6.512091 CGTTCTTCTAGTGGAGCTAGTACATC 60.512 46.154 0.00 0.00 45.65 3.06
4903 7775 5.297278 CGTTCTTCTAGTGGAGCTAGTACAT 59.703 44.000 0.00 0.00 45.65 2.29
4904 7776 4.634883 CGTTCTTCTAGTGGAGCTAGTACA 59.365 45.833 0.00 0.00 45.65 2.90
4905 7777 4.496175 GCGTTCTTCTAGTGGAGCTAGTAC 60.496 50.000 0.00 0.00 45.65 2.73
4906 7778 3.626670 GCGTTCTTCTAGTGGAGCTAGTA 59.373 47.826 0.00 0.00 45.65 1.82
4907 7779 2.424246 GCGTTCTTCTAGTGGAGCTAGT 59.576 50.000 0.00 0.00 45.65 2.57
4908 7780 2.685897 AGCGTTCTTCTAGTGGAGCTAG 59.314 50.000 0.00 0.00 46.59 3.42
4909 7781 2.683867 GAGCGTTCTTCTAGTGGAGCTA 59.316 50.000 0.00 0.00 33.51 3.32
4910 7782 1.474879 GAGCGTTCTTCTAGTGGAGCT 59.525 52.381 0.00 0.00 36.32 4.09
4911 7783 1.795889 CGAGCGTTCTTCTAGTGGAGC 60.796 57.143 0.00 0.00 0.00 4.70
4912 7784 1.469308 ACGAGCGTTCTTCTAGTGGAG 59.531 52.381 0.00 0.00 0.00 3.86
4913 7785 1.199327 CACGAGCGTTCTTCTAGTGGA 59.801 52.381 0.00 0.00 34.79 4.02
4914 7786 1.618861 CACGAGCGTTCTTCTAGTGG 58.381 55.000 0.00 0.00 34.79 4.00
4915 7787 0.985549 GCACGAGCGTTCTTCTAGTG 59.014 55.000 0.00 0.00 39.26 2.74
4935 7807 3.250040 AGTTAATGTGACCTCGTTGCAAC 59.750 43.478 19.89 19.89 0.00 4.17
4996 7868 3.814842 GTGTGTGTGTGAGGATTTGATGA 59.185 43.478 0.00 0.00 0.00 2.92
5017 7889 0.634465 GAGGAAGGAGGGAGGAGAGT 59.366 60.000 0.00 0.00 0.00 3.24
5018 7890 0.633921 TGAGGAAGGAGGGAGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
5019 7891 0.336737 GTGAGGAAGGAGGGAGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
5020 7892 0.338120 AGTGAGGAAGGAGGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
5086 7963 6.092122 CGTGCCAATTGAGTAAGTCTTATTGA 59.908 38.462 7.12 0.00 33.91 2.57
5264 8190 8.556213 AAAAACGCTTTCAGGTGTTATCTATA 57.444 30.769 0.00 0.00 38.72 1.31
5303 8229 9.860393 ACTTATATTTAGGAATGGAGGGAGTAT 57.140 33.333 0.00 0.00 0.00 2.12
5330 8256 3.611113 TCCGCGTTAGAATCTCGAAAAAG 59.389 43.478 4.92 0.00 0.00 2.27
5402 8328 5.350091 GCTTGTTTGCCTTTTGTTTGAAGTA 59.650 36.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.