Multiple sequence alignment - TraesCS3B01G311500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G311500 chr3B 100.000 2758 0 0 1 2758 500538704 500541461 0.000000e+00 5094.0
1 TraesCS3B01G311500 chr3B 83.854 1152 88 48 829 1951 500307449 500308531 0.000000e+00 1007.0
2 TraesCS3B01G311500 chr3B 83.854 1152 88 48 829 1951 500315996 500317078 0.000000e+00 1007.0
3 TraesCS3B01G311500 chr3D 92.587 1956 94 21 829 2758 384659311 384661241 0.000000e+00 2761.0
4 TraesCS3B01G311500 chr3D 82.496 1154 102 43 829 1956 384654931 384656010 0.000000e+00 920.0
5 TraesCS3B01G311500 chr3D 87.755 245 26 3 2226 2469 21769293 21769052 1.620000e-72 283.0
6 TraesCS3B01G311500 chr3D 84.810 79 9 1 624 702 384659243 384659318 2.950000e-10 76.8
7 TraesCS3B01G311500 chr3A 91.230 1870 106 24 827 2661 507286409 507288255 0.000000e+00 2492.0
8 TraesCS3B01G311500 chr3A 81.538 1105 88 50 861 1956 507272899 507273896 0.000000e+00 804.0
9 TraesCS3B01G311500 chr7B 89.755 449 43 2 4 450 72030854 72030407 3.080000e-159 571.0
10 TraesCS3B01G311500 chr7B 87.054 448 54 4 4 450 158897536 158897980 1.140000e-138 503.0
11 TraesCS3B01G311500 chr5D 88.196 449 49 3 4 450 417574014 417574460 1.450000e-147 532.0
12 TraesCS3B01G311500 chr5D 96.970 33 1 0 2145 2177 5812117 5812085 3.840000e-04 56.5
13 TraesCS3B01G311500 chr1D 88.710 310 25 6 146 453 62697625 62697926 1.210000e-98 370.0
14 TraesCS3B01G311500 chr4A 87.662 308 34 4 145 450 651824567 651824262 3.380000e-94 355.0
15 TraesCS3B01G311500 chr4A 97.581 124 3 0 706 829 681900489 681900366 2.150000e-51 213.0
16 TraesCS3B01G311500 chr4A 96.748 123 4 0 706 828 596004273 596004151 3.600000e-49 206.0
17 TraesCS3B01G311500 chr4A 93.548 124 8 0 706 829 604853555 604853678 4.690000e-43 185.0
18 TraesCS3B01G311500 chr6B 87.742 310 27 7 145 450 633355961 633356263 4.370000e-93 351.0
19 TraesCS3B01G311500 chrUn 87.460 311 27 9 145 450 313234767 313234464 5.650000e-92 348.0
20 TraesCS3B01G311500 chrUn 87.138 311 28 9 145 450 313238549 313238246 2.630000e-90 342.0
21 TraesCS3B01G311500 chr4B 87.419 310 28 9 145 450 12060315 12060013 2.030000e-91 346.0
22 TraesCS3B01G311500 chr7D 88.163 245 25 3 2226 2469 544154891 544154650 3.480000e-74 289.0
23 TraesCS3B01G311500 chr7D 80.153 262 22 17 1830 2065 544155143 544154886 4.720000e-38 169.0
24 TraesCS3B01G311500 chr7A 86.066 244 30 3 2227 2469 675749216 675748976 2.720000e-65 259.0
25 TraesCS3B01G311500 chr7A 92.742 124 9 0 706 829 510494749 510494872 2.180000e-41 180.0
26 TraesCS3B01G311500 chr7A 78.327 263 26 19 1830 2065 675749469 675749211 1.030000e-29 141.0
27 TraesCS3B01G311500 chr2D 97.581 124 3 0 706 829 620514501 620514378 2.150000e-51 213.0
28 TraesCS3B01G311500 chr2D 96.748 123 4 0 706 828 63711298 63711176 3.600000e-49 206.0
29 TraesCS3B01G311500 chr5A 97.561 123 3 0 706 828 581930833 581930711 7.740000e-51 211.0
30 TraesCS3B01G311500 chr1A 96.748 123 4 0 706 828 488074727 488074849 3.600000e-49 206.0
31 TraesCS3B01G311500 chr1B 80.328 305 29 18 1830 2107 659104331 659104031 4.660000e-48 202.0
32 TraesCS3B01G311500 chr5B 93.496 123 8 0 706 828 294553487 294553609 1.690000e-42 183.0
33 TraesCS3B01G311500 chr5B 96.875 32 1 0 2145 2176 316708899 316708930 1.000000e-03 54.7
34 TraesCS3B01G311500 chr2B 88.095 84 10 0 4 87 99540684 99540601 1.750000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G311500 chr3B 500538704 500541461 2757 False 5094.0 5094 100.000 1 2758 1 chr3B.!!$F3 2757
1 TraesCS3B01G311500 chr3B 500307449 500308531 1082 False 1007.0 1007 83.854 829 1951 1 chr3B.!!$F1 1122
2 TraesCS3B01G311500 chr3B 500315996 500317078 1082 False 1007.0 1007 83.854 829 1951 1 chr3B.!!$F2 1122
3 TraesCS3B01G311500 chr3D 384654931 384661241 6310 False 1252.6 2761 86.631 624 2758 3 chr3D.!!$F1 2134
4 TraesCS3B01G311500 chr3A 507286409 507288255 1846 False 2492.0 2492 91.230 827 2661 1 chr3A.!!$F2 1834
5 TraesCS3B01G311500 chr3A 507272899 507273896 997 False 804.0 804 81.538 861 1956 1 chr3A.!!$F1 1095
6 TraesCS3B01G311500 chrUn 313234464 313238549 4085 True 345.0 348 87.299 145 450 2 chrUn.!!$R1 305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 4419 0.034059 CGGCTCCCCTGACATACATC 59.966 60.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 7813 0.394899 CAGGATTGTCTTCCCCCAGC 60.395 60.0 0.0 0.0 36.35 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.445845 CCTGGTGCCCCTCCGATA 60.446 66.667 0.00 0.00 0.00 2.92
19 20 3.161450 TGGTGCCCCTCCGATAGC 61.161 66.667 0.00 0.00 0.00 2.97
20 21 4.301027 GGTGCCCCTCCGATAGCG 62.301 72.222 0.00 0.00 37.24 4.26
23 24 4.344474 GCCCCTCCGATAGCGACG 62.344 72.222 0.00 0.00 40.82 5.12
24 25 4.344474 CCCCTCCGATAGCGACGC 62.344 72.222 13.03 13.03 40.82 5.19
26 27 2.050895 CCTCCGATAGCGACGCAG 60.051 66.667 23.70 9.14 40.82 5.18
27 28 2.727647 CTCCGATAGCGACGCAGC 60.728 66.667 23.70 9.89 40.82 5.25
28 29 4.607606 TCCGATAGCGACGCAGCG 62.608 66.667 23.70 20.48 43.00 5.18
44 45 4.444838 CGCGATCGGTGGTGGGAA 62.445 66.667 18.30 0.00 0.00 3.97
45 46 2.511600 GCGATCGGTGGTGGGAAG 60.512 66.667 18.30 0.00 0.00 3.46
46 47 2.186903 CGATCGGTGGTGGGAAGG 59.813 66.667 7.38 0.00 0.00 3.46
47 48 2.124695 GATCGGTGGTGGGAAGGC 60.125 66.667 0.00 0.00 0.00 4.35
48 49 2.933287 ATCGGTGGTGGGAAGGCA 60.933 61.111 0.00 0.00 0.00 4.75
49 50 3.268103 ATCGGTGGTGGGAAGGCAC 62.268 63.158 0.00 0.00 0.00 5.01
51 52 3.948719 GGTGGTGGGAAGGCACGA 61.949 66.667 0.00 0.00 0.00 4.35
52 53 2.668550 GTGGTGGGAAGGCACGAC 60.669 66.667 0.00 0.00 0.00 4.34
53 54 3.948719 TGGTGGGAAGGCACGACC 61.949 66.667 0.00 2.06 39.61 4.79
54 55 3.948719 GGTGGGAAGGCACGACCA 61.949 66.667 0.00 0.00 43.14 4.02
55 56 2.358737 GTGGGAAGGCACGACCAG 60.359 66.667 0.00 0.00 43.14 4.00
56 57 2.525629 TGGGAAGGCACGACCAGA 60.526 61.111 0.00 0.00 43.14 3.86
68 69 3.354131 GACCAGATCGACCTCTTGC 57.646 57.895 0.00 0.00 0.00 4.01
70 71 0.247736 ACCAGATCGACCTCTTGCAC 59.752 55.000 0.00 0.00 0.00 4.57
71 72 0.460987 CCAGATCGACCTCTTGCACC 60.461 60.000 0.00 0.00 0.00 5.01
72 73 0.803768 CAGATCGACCTCTTGCACCG 60.804 60.000 0.00 0.00 0.00 4.94
74 75 3.665675 ATCGACCTCTTGCACCGGC 62.666 63.158 0.00 0.00 41.68 6.13
98 99 2.997897 AGCCGCCCTCGTTTCTCT 60.998 61.111 0.00 0.00 0.00 3.10
100 101 2.391389 GCCGCCCTCGTTTCTCTTG 61.391 63.158 0.00 0.00 0.00 3.02
102 103 1.004918 CGCCCTCGTTTCTCTTGGT 60.005 57.895 0.00 0.00 0.00 3.67
103 104 0.245539 CGCCCTCGTTTCTCTTGGTA 59.754 55.000 0.00 0.00 0.00 3.25
104 105 1.337447 CGCCCTCGTTTCTCTTGGTAA 60.337 52.381 0.00 0.00 0.00 2.85
105 106 2.347731 GCCCTCGTTTCTCTTGGTAAG 58.652 52.381 0.00 0.00 0.00 2.34
106 107 2.935676 GCCCTCGTTTCTCTTGGTAAGG 60.936 54.545 0.00 0.00 0.00 2.69
107 108 2.347731 CCTCGTTTCTCTTGGTAAGGC 58.652 52.381 0.00 0.00 0.00 4.35
108 109 2.028020 CCTCGTTTCTCTTGGTAAGGCT 60.028 50.000 0.00 0.00 0.00 4.58
109 110 3.194968 CCTCGTTTCTCTTGGTAAGGCTA 59.805 47.826 0.00 0.00 0.00 3.93
112 113 5.801380 TCGTTTCTCTTGGTAAGGCTAATT 58.199 37.500 0.00 0.00 0.00 1.40
113 114 6.938507 TCGTTTCTCTTGGTAAGGCTAATTA 58.061 36.000 0.00 0.00 0.00 1.40
116 117 8.122952 CGTTTCTCTTGGTAAGGCTAATTAATG 58.877 37.037 0.00 0.00 0.00 1.90
117 118 8.957466 GTTTCTCTTGGTAAGGCTAATTAATGT 58.043 33.333 0.00 0.00 0.00 2.71
118 119 8.506168 TTCTCTTGGTAAGGCTAATTAATGTG 57.494 34.615 0.00 0.00 0.00 3.21
119 120 7.857456 TCTCTTGGTAAGGCTAATTAATGTGA 58.143 34.615 0.00 0.00 0.00 3.58
120 121 8.494433 TCTCTTGGTAAGGCTAATTAATGTGAT 58.506 33.333 0.00 0.00 0.00 3.06
121 122 9.125026 CTCTTGGTAAGGCTAATTAATGTGATT 57.875 33.333 0.00 0.00 0.00 2.57
122 123 8.902806 TCTTGGTAAGGCTAATTAATGTGATTG 58.097 33.333 0.00 0.00 0.00 2.67
123 124 8.815565 TTGGTAAGGCTAATTAATGTGATTGA 57.184 30.769 0.00 0.00 0.00 2.57
124 125 8.450578 TGGTAAGGCTAATTAATGTGATTGAG 57.549 34.615 0.00 0.00 0.00 3.02
126 127 5.679734 AGGCTAATTAATGTGATTGAGCG 57.320 39.130 0.00 0.00 0.00 5.03
127 128 5.368145 AGGCTAATTAATGTGATTGAGCGA 58.632 37.500 0.00 0.00 0.00 4.93
128 129 6.000219 AGGCTAATTAATGTGATTGAGCGAT 59.000 36.000 0.00 0.00 0.00 4.58
129 130 6.488006 AGGCTAATTAATGTGATTGAGCGATT 59.512 34.615 0.00 0.00 0.00 3.34
130 131 7.661437 AGGCTAATTAATGTGATTGAGCGATTA 59.339 33.333 0.00 0.00 0.00 1.75
132 133 9.831737 GCTAATTAATGTGATTGAGCGATTAAT 57.168 29.630 0.00 0.00 32.91 1.40
134 135 8.511465 AATTAATGTGATTGAGCGATTAATGC 57.489 30.769 0.00 0.00 32.25 3.56
143 144 3.660501 AGCGATTAATGCTCATACGGA 57.339 42.857 0.00 0.00 38.62 4.69
146 147 2.661675 CGATTAATGCTCATACGGACGG 59.338 50.000 0.00 0.00 0.00 4.79
147 148 3.650139 GATTAATGCTCATACGGACGGT 58.350 45.455 0.00 0.00 0.00 4.83
148 149 3.530265 TTAATGCTCATACGGACGGTT 57.470 42.857 0.00 0.00 0.00 4.44
158 159 5.481105 TCATACGGACGGTTATTTGTTTCT 58.519 37.500 0.00 0.00 0.00 2.52
273 275 7.939039 AGATATTACTAAATAGCTTGCTGCCAA 59.061 33.333 5.26 0.00 40.55 4.52
339 341 1.130955 GTGACGCGAAACTAAACCGA 58.869 50.000 15.93 0.00 0.00 4.69
342 344 1.987770 GACGCGAAACTAAACCGATGA 59.012 47.619 15.93 0.00 0.00 2.92
344 346 2.256174 CGCGAAACTAAACCGATGAGA 58.744 47.619 0.00 0.00 0.00 3.27
346 348 3.306166 CGCGAAACTAAACCGATGAGATT 59.694 43.478 0.00 0.00 0.00 2.40
352 354 3.521937 ACTAAACCGATGAGATTGGGGAA 59.478 43.478 0.00 0.00 38.20 3.97
355 357 0.109342 CCGATGAGATTGGGGAAGGG 59.891 60.000 0.00 0.00 0.00 3.95
356 358 0.109342 CGATGAGATTGGGGAAGGGG 59.891 60.000 0.00 0.00 0.00 4.79
357 359 1.522900 GATGAGATTGGGGAAGGGGA 58.477 55.000 0.00 0.00 0.00 4.81
358 360 1.143889 GATGAGATTGGGGAAGGGGAC 59.856 57.143 0.00 0.00 0.00 4.46
389 391 4.740695 CCAGCGAAATAAAACGGTTGAAAA 59.259 37.500 0.00 0.00 38.13 2.29
392 394 6.143118 CAGCGAAATAAAACGGTTGAAAATGA 59.857 34.615 0.00 0.00 38.13 2.57
412 414 3.437395 TGATGGGACGAAAATAAACCGTG 59.563 43.478 0.00 0.00 36.60 4.94
413 415 3.123157 TGGGACGAAAATAAACCGTGA 57.877 42.857 0.00 0.00 36.60 4.35
414 416 3.474600 TGGGACGAAAATAAACCGTGAA 58.525 40.909 0.00 0.00 36.60 3.18
415 417 4.073549 TGGGACGAAAATAAACCGTGAAT 58.926 39.130 0.00 0.00 36.60 2.57
416 418 5.243981 TGGGACGAAAATAAACCGTGAATA 58.756 37.500 0.00 0.00 36.60 1.75
417 419 5.122082 TGGGACGAAAATAAACCGTGAATAC 59.878 40.000 0.00 0.00 36.60 1.89
418 420 5.352293 GGGACGAAAATAAACCGTGAATACT 59.648 40.000 0.00 0.00 36.60 2.12
420 422 7.225341 GGGACGAAAATAAACCGTGAATACTAT 59.775 37.037 0.00 0.00 36.60 2.12
431 603 6.803642 ACCGTGAATACTATTCTACCAACTC 58.196 40.000 9.69 0.00 0.00 3.01
450 622 6.039270 CCAACTCAGACATTAGGAGTAGAGAG 59.961 46.154 0.00 0.00 40.80 3.20
456 628 5.073437 ACATTAGGAGTAGAGAGGCTCAT 57.927 43.478 18.26 7.40 33.66 2.90
457 629 6.044989 AGACATTAGGAGTAGAGAGGCTCATA 59.955 42.308 18.26 6.32 33.66 2.15
470 642 2.708386 GCTCATATAGCGACGAAGGT 57.292 50.000 0.00 0.00 42.53 3.50
471 643 2.586900 GCTCATATAGCGACGAAGGTC 58.413 52.381 0.00 0.00 42.53 3.85
479 651 3.690745 GACGAAGGTCGGGGAAGA 58.309 61.111 2.38 0.00 45.59 2.87
480 652 1.969862 GACGAAGGTCGGGGAAGAA 59.030 57.895 2.38 0.00 45.59 2.52
482 654 1.448013 CGAAGGTCGGGGAAGAAGC 60.448 63.158 0.00 0.00 36.00 3.86
484 656 0.036306 GAAGGTCGGGGAAGAAGCAA 59.964 55.000 0.00 0.00 0.00 3.91
485 657 0.036875 AAGGTCGGGGAAGAAGCAAG 59.963 55.000 0.00 0.00 0.00 4.01
487 659 0.250770 GGTCGGGGAAGAAGCAAGTT 60.251 55.000 0.00 0.00 0.00 2.66
488 660 0.875059 GTCGGGGAAGAAGCAAGTTG 59.125 55.000 0.00 0.00 0.00 3.16
489 661 0.250727 TCGGGGAAGAAGCAAGTTGG 60.251 55.000 4.75 0.00 0.00 3.77
493 665 2.316108 GGGAAGAAGCAAGTTGGGAAA 58.684 47.619 4.75 0.00 0.00 3.13
494 666 2.899900 GGGAAGAAGCAAGTTGGGAAAT 59.100 45.455 4.75 0.00 0.00 2.17
495 667 3.306294 GGGAAGAAGCAAGTTGGGAAATG 60.306 47.826 4.75 0.00 0.00 2.32
496 668 3.306294 GGAAGAAGCAAGTTGGGAAATGG 60.306 47.826 4.75 0.00 0.00 3.16
501 673 0.609662 CAAGTTGGGAAATGGCAGGG 59.390 55.000 0.00 0.00 0.00 4.45
502 674 0.545071 AAGTTGGGAAATGGCAGGGG 60.545 55.000 0.00 0.00 0.00 4.79
505 677 0.417035 TTGGGAAATGGCAGGGGAAT 59.583 50.000 0.00 0.00 0.00 3.01
508 680 1.486310 GGGAAATGGCAGGGGAATTTC 59.514 52.381 0.00 0.00 38.84 2.17
510 682 3.629796 GGGAAATGGCAGGGGAATTTCTA 60.630 47.826 8.42 0.00 39.30 2.10
512 684 3.319031 AATGGCAGGGGAATTTCTAGG 57.681 47.619 0.00 0.00 0.00 3.02
516 744 3.024547 GGCAGGGGAATTTCTAGGAAAC 58.975 50.000 0.00 0.00 0.00 2.78
526 754 8.251026 GGGAATTTCTAGGAAACATTTTACCAG 58.749 37.037 0.00 0.00 0.00 4.00
527 755 8.251026 GGAATTTCTAGGAAACATTTTACCAGG 58.749 37.037 0.00 0.00 0.00 4.45
528 756 8.950007 AATTTCTAGGAAACATTTTACCAGGA 57.050 30.769 0.00 0.00 0.00 3.86
530 758 6.945636 TCTAGGAAACATTTTACCAGGAGA 57.054 37.500 0.00 0.00 0.00 3.71
531 759 7.324388 TCTAGGAAACATTTTACCAGGAGAA 57.676 36.000 0.00 0.00 0.00 2.87
532 760 7.928873 TCTAGGAAACATTTTACCAGGAGAAT 58.071 34.615 0.00 0.00 0.00 2.40
533 761 6.840780 AGGAAACATTTTACCAGGAGAATG 57.159 37.500 0.00 3.17 36.00 2.67
534 762 6.552008 AGGAAACATTTTACCAGGAGAATGA 58.448 36.000 16.11 0.00 34.47 2.57
535 763 7.184862 AGGAAACATTTTACCAGGAGAATGAT 58.815 34.615 16.11 6.31 34.47 2.45
536 764 7.675619 AGGAAACATTTTACCAGGAGAATGATT 59.324 33.333 16.11 12.19 34.47 2.57
537 765 7.976175 GGAAACATTTTACCAGGAGAATGATTC 59.024 37.037 18.14 18.14 38.99 2.52
538 766 7.410120 AACATTTTACCAGGAGAATGATTCC 57.590 36.000 16.11 0.00 34.47 3.01
540 768 5.796502 TTTTACCAGGAGAATGATTCCCT 57.203 39.130 0.75 5.55 35.20 4.20
542 770 2.566746 ACCAGGAGAATGATTCCCTGT 58.433 47.619 26.54 18.00 42.08 4.00
543 771 2.922283 ACCAGGAGAATGATTCCCTGTT 59.078 45.455 26.54 17.90 42.08 3.16
544 772 3.285484 CCAGGAGAATGATTCCCTGTTG 58.715 50.000 26.54 16.36 42.08 3.33
545 773 3.285484 CAGGAGAATGATTCCCTGTTGG 58.715 50.000 23.37 8.14 40.37 3.77
546 774 3.054139 CAGGAGAATGATTCCCTGTTGGA 60.054 47.826 23.37 0.00 40.37 3.53
547 775 3.054065 AGGAGAATGATTCCCTGTTGGAC 60.054 47.826 12.48 0.00 45.11 4.02
548 776 3.054065 GGAGAATGATTCCCTGTTGGACT 60.054 47.826 0.75 0.00 45.11 3.85
549 777 4.568592 GGAGAATGATTCCCTGTTGGACTT 60.569 45.833 0.75 0.00 45.11 3.01
556 784 1.004277 TCCCTGTTGGACTTATGTGGC 59.996 52.381 0.00 0.00 38.61 5.01
557 785 1.463674 CCTGTTGGACTTATGTGGCC 58.536 55.000 0.00 0.00 34.57 5.36
559 787 1.004745 CTGTTGGACTTATGTGGCCCT 59.995 52.381 0.00 0.00 0.00 5.19
560 788 1.271871 TGTTGGACTTATGTGGCCCTG 60.272 52.381 0.00 0.00 0.00 4.45
562 790 1.959710 TGGACTTATGTGGCCCTGTA 58.040 50.000 0.00 0.00 0.00 2.74
566 794 3.131396 GACTTATGTGGCCCTGTAATCG 58.869 50.000 0.00 0.00 0.00 3.34
567 795 2.504175 ACTTATGTGGCCCTGTAATCGT 59.496 45.455 0.00 0.00 0.00 3.73
568 796 3.054655 ACTTATGTGGCCCTGTAATCGTT 60.055 43.478 0.00 0.00 0.00 3.85
569 797 4.162698 ACTTATGTGGCCCTGTAATCGTTA 59.837 41.667 0.00 0.00 0.00 3.18
570 798 3.637911 ATGTGGCCCTGTAATCGTTAA 57.362 42.857 0.00 0.00 0.00 2.01
573 801 4.142790 TGTGGCCCTGTAATCGTTAAAAA 58.857 39.130 0.00 0.00 0.00 1.94
574 802 4.023021 TGTGGCCCTGTAATCGTTAAAAAC 60.023 41.667 0.00 0.00 0.00 2.43
576 804 4.767928 TGGCCCTGTAATCGTTAAAAACAT 59.232 37.500 0.00 0.00 0.00 2.71
577 805 5.244178 TGGCCCTGTAATCGTTAAAAACATT 59.756 36.000 0.00 0.00 0.00 2.71
579 807 6.153756 GCCCTGTAATCGTTAAAAACATTGT 58.846 36.000 0.00 0.00 0.00 2.71
580 808 6.643360 GCCCTGTAATCGTTAAAAACATTGTT 59.357 34.615 0.00 0.00 0.00 2.83
581 809 7.808856 GCCCTGTAATCGTTAAAAACATTGTTA 59.191 33.333 1.76 0.00 0.00 2.41
582 810 9.849166 CCCTGTAATCGTTAAAAACATTGTTAT 57.151 29.630 1.76 0.00 0.00 1.89
694 4384 7.692908 AAATACTTGTGCAATGTAAACACAC 57.307 32.000 0.00 0.00 43.57 3.82
695 4385 4.040445 ACTTGTGCAATGTAAACACACC 57.960 40.909 0.00 0.00 43.57 4.16
696 4386 2.765108 TGTGCAATGTAAACACACCG 57.235 45.000 0.00 0.00 39.29 4.94
697 4387 1.335182 TGTGCAATGTAAACACACCGG 59.665 47.619 0.00 0.00 39.29 5.28
698 4388 1.604755 GTGCAATGTAAACACACCGGA 59.395 47.619 9.46 0.00 34.43 5.14
699 4389 2.033550 GTGCAATGTAAACACACCGGAA 59.966 45.455 9.46 0.00 34.43 4.30
700 4390 2.033550 TGCAATGTAAACACACCGGAAC 59.966 45.455 9.46 0.00 0.00 3.62
701 4391 2.606065 GCAATGTAAACACACCGGAACC 60.606 50.000 9.46 0.00 0.00 3.62
702 4392 1.515081 ATGTAAACACACCGGAACCG 58.485 50.000 9.46 6.25 39.44 4.44
720 4410 4.168291 GAGGAAGCGGCTCCCCTG 62.168 72.222 23.20 0.00 35.95 4.45
721 4411 4.722535 AGGAAGCGGCTCCCCTGA 62.723 66.667 19.17 0.00 35.95 3.86
722 4412 4.475135 GGAAGCGGCTCCCCTGAC 62.475 72.222 1.45 0.00 0.00 3.51
723 4413 3.706373 GAAGCGGCTCCCCTGACA 61.706 66.667 1.45 0.00 0.00 3.58
724 4414 3.011517 AAGCGGCTCCCCTGACAT 61.012 61.111 1.45 0.00 0.00 3.06
725 4415 1.686325 GAAGCGGCTCCCCTGACATA 61.686 60.000 1.45 0.00 0.00 2.29
726 4416 1.972660 AAGCGGCTCCCCTGACATAC 61.973 60.000 1.45 0.00 0.00 2.39
727 4417 2.731571 GCGGCTCCCCTGACATACA 61.732 63.158 0.00 0.00 0.00 2.29
728 4418 2.044806 GCGGCTCCCCTGACATACAT 62.045 60.000 0.00 0.00 0.00 2.29
729 4419 0.034059 CGGCTCCCCTGACATACATC 59.966 60.000 0.00 0.00 0.00 3.06
730 4420 1.131638 GGCTCCCCTGACATACATCA 58.868 55.000 0.00 0.00 0.00 3.07
731 4421 1.202698 GGCTCCCCTGACATACATCAC 60.203 57.143 0.00 0.00 0.00 3.06
732 4422 1.202698 GCTCCCCTGACATACATCACC 60.203 57.143 0.00 0.00 0.00 4.02
733 4423 2.402564 CTCCCCTGACATACATCACCT 58.597 52.381 0.00 0.00 0.00 4.00
734 4424 2.103771 CTCCCCTGACATACATCACCTG 59.896 54.545 0.00 0.00 0.00 4.00
735 4425 1.475751 CCCCTGACATACATCACCTGC 60.476 57.143 0.00 0.00 0.00 4.85
736 4426 1.210234 CCCTGACATACATCACCTGCA 59.790 52.381 0.00 0.00 0.00 4.41
737 4427 2.558378 CCTGACATACATCACCTGCAG 58.442 52.381 6.78 6.78 0.00 4.41
738 4428 2.093288 CCTGACATACATCACCTGCAGT 60.093 50.000 13.81 0.00 0.00 4.40
739 4429 3.603532 CTGACATACATCACCTGCAGTT 58.396 45.455 13.81 0.00 0.00 3.16
740 4430 3.337358 TGACATACATCACCTGCAGTTG 58.663 45.455 13.81 9.31 0.00 3.16
741 4431 3.244526 TGACATACATCACCTGCAGTTGT 60.245 43.478 13.81 12.59 0.00 3.32
742 4432 3.076621 ACATACATCACCTGCAGTTGTG 58.923 45.455 13.81 14.41 0.00 3.33
743 4433 2.183478 TACATCACCTGCAGTTGTGG 57.817 50.000 19.13 11.79 33.29 4.17
744 4434 1.174712 ACATCACCTGCAGTTGTGGC 61.175 55.000 19.13 0.00 33.29 5.01
745 4435 1.151221 ATCACCTGCAGTTGTGGCA 59.849 52.632 19.13 5.42 39.32 4.92
746 4436 1.174712 ATCACCTGCAGTTGTGGCAC 61.175 55.000 19.13 11.55 36.11 5.01
747 4437 1.825191 CACCTGCAGTTGTGGCACT 60.825 57.895 19.83 0.00 36.11 4.40
748 4438 1.825191 ACCTGCAGTTGTGGCACTG 60.825 57.895 19.83 10.08 46.15 3.66
760 4450 2.034687 GCACTGCCATGTGGGTCT 59.965 61.111 0.54 0.00 39.65 3.85
761 4451 2.338015 GCACTGCCATGTGGGTCTG 61.338 63.158 0.54 0.00 39.65 3.51
762 4452 1.073722 CACTGCCATGTGGGTCTGT 59.926 57.895 0.54 0.00 39.65 3.41
763 4453 0.538057 CACTGCCATGTGGGTCTGTT 60.538 55.000 0.54 0.00 39.65 3.16
764 4454 0.185901 ACTGCCATGTGGGTCTGTTT 59.814 50.000 0.54 0.00 39.65 2.83
765 4455 1.331214 CTGCCATGTGGGTCTGTTTT 58.669 50.000 0.54 0.00 39.65 2.43
766 4456 1.688197 CTGCCATGTGGGTCTGTTTTT 59.312 47.619 0.54 0.00 39.65 1.94
767 4457 1.686052 TGCCATGTGGGTCTGTTTTTC 59.314 47.619 0.54 0.00 39.65 2.29
768 4458 1.686052 GCCATGTGGGTCTGTTTTTCA 59.314 47.619 0.54 0.00 39.65 2.69
769 4459 2.102252 GCCATGTGGGTCTGTTTTTCAA 59.898 45.455 0.54 0.00 39.65 2.69
770 4460 3.244181 GCCATGTGGGTCTGTTTTTCAAT 60.244 43.478 0.54 0.00 39.65 2.57
771 4461 4.309099 CCATGTGGGTCTGTTTTTCAATG 58.691 43.478 0.00 0.00 0.00 2.82
772 4462 4.039004 CCATGTGGGTCTGTTTTTCAATGA 59.961 41.667 0.00 0.00 0.00 2.57
773 4463 4.916983 TGTGGGTCTGTTTTTCAATGAG 57.083 40.909 0.00 0.00 0.00 2.90
774 4464 3.068024 TGTGGGTCTGTTTTTCAATGAGC 59.932 43.478 0.00 0.00 0.00 4.26
775 4465 2.627699 TGGGTCTGTTTTTCAATGAGCC 59.372 45.455 0.00 0.00 43.27 4.70
776 4466 2.029020 GGGTCTGTTTTTCAATGAGCCC 60.029 50.000 0.00 0.00 38.81 5.19
777 4467 2.627699 GGTCTGTTTTTCAATGAGCCCA 59.372 45.455 0.00 0.00 0.00 5.36
778 4468 3.552890 GGTCTGTTTTTCAATGAGCCCAC 60.553 47.826 0.00 0.00 0.00 4.61
779 4469 2.627699 TCTGTTTTTCAATGAGCCCACC 59.372 45.455 0.00 0.00 0.00 4.61
780 4470 2.629617 CTGTTTTTCAATGAGCCCACCT 59.370 45.455 0.00 0.00 0.00 4.00
781 4471 2.364970 TGTTTTTCAATGAGCCCACCTG 59.635 45.455 0.00 0.00 0.00 4.00
782 4472 2.365293 GTTTTTCAATGAGCCCACCTGT 59.635 45.455 0.00 0.00 0.00 4.00
783 4473 1.909700 TTTCAATGAGCCCACCTGTC 58.090 50.000 0.00 0.00 0.00 3.51
784 4474 0.770499 TTCAATGAGCCCACCTGTCA 59.230 50.000 0.00 0.00 0.00 3.58
785 4475 0.325933 TCAATGAGCCCACCTGTCAG 59.674 55.000 0.00 0.00 0.00 3.51
786 4476 0.679002 CAATGAGCCCACCTGTCAGG 60.679 60.000 17.88 17.88 42.49 3.86
790 4480 2.262774 GAGCCCACCTGTCAGGGATG 62.263 65.000 23.06 12.62 45.39 3.51
792 4482 4.152248 CCACCTGTCAGGGATGGA 57.848 61.111 23.06 0.00 40.58 3.41
793 4483 2.386864 CCACCTGTCAGGGATGGAA 58.613 57.895 23.06 0.00 40.58 3.53
794 4484 0.035056 CCACCTGTCAGGGATGGAAC 60.035 60.000 23.06 0.00 40.58 3.62
795 4485 0.035056 CACCTGTCAGGGATGGAACC 60.035 60.000 23.06 0.00 40.58 3.62
796 4486 1.221840 CCTGTCAGGGATGGAACCG 59.778 63.158 11.46 0.00 0.00 4.44
797 4487 1.450312 CTGTCAGGGATGGAACCGC 60.450 63.158 0.00 0.00 0.00 5.68
798 4488 2.184020 CTGTCAGGGATGGAACCGCA 62.184 60.000 0.00 0.00 0.00 5.69
799 4489 1.745489 GTCAGGGATGGAACCGCAC 60.745 63.158 0.00 0.00 0.00 5.34
800 4490 2.438434 CAGGGATGGAACCGCACC 60.438 66.667 0.00 0.00 0.00 5.01
801 4491 3.728373 AGGGATGGAACCGCACCC 61.728 66.667 0.00 0.00 40.71 4.61
802 4492 3.728373 GGGATGGAACCGCACCCT 61.728 66.667 0.00 0.00 37.75 4.34
803 4493 2.438434 GGATGGAACCGCACCCTG 60.438 66.667 0.00 0.00 0.00 4.45
804 4494 3.134127 GATGGAACCGCACCCTGC 61.134 66.667 0.00 0.00 40.69 4.85
805 4495 4.740822 ATGGAACCGCACCCTGCC 62.741 66.667 0.00 0.00 41.12 4.85
904 4594 0.679505 AGTCAAAGCGCACTAGGACA 59.320 50.000 11.47 0.00 33.64 4.02
969 4659 0.988145 CCCACCCTCCTGCCAGATTA 60.988 60.000 0.00 0.00 0.00 1.75
994 4685 0.111089 GTCGTGAAACAGAGCAAGCG 60.111 55.000 0.00 0.00 35.74 4.68
1048 4759 3.375299 CAGCATAGGTTCCTTTCCTTTCG 59.625 47.826 0.00 0.00 36.60 3.46
1175 4886 2.569183 CGAGACCTCGTCCTCCTTT 58.431 57.895 10.96 0.00 46.99 3.11
1182 4893 0.321671 CTCGTCCTCCTTTTCCTGCA 59.678 55.000 0.00 0.00 0.00 4.41
1195 4906 2.254350 CTGCAACTCCGACGACGA 59.746 61.111 9.28 0.00 42.66 4.20
1196 4907 2.050714 TGCAACTCCGACGACGAC 60.051 61.111 9.28 0.00 42.66 4.34
1197 4908 3.164011 GCAACTCCGACGACGACG 61.164 66.667 12.66 12.66 42.66 5.12
1415 5258 0.681243 GGGAGGTTTCCTGACCATGC 60.681 60.000 0.00 0.00 43.49 4.06
1460 5311 3.901667 CTGTCAAAATACTACGACGGC 57.098 47.619 0.00 0.00 0.00 5.68
1522 5373 1.561542 GGAGGATCTGCCCAAGAAGAA 59.438 52.381 0.00 0.00 38.79 2.52
1571 5456 1.552337 AGCAACATCGATCTGGACAGT 59.448 47.619 0.00 0.00 0.00 3.55
1572 5457 2.027745 AGCAACATCGATCTGGACAGTT 60.028 45.455 0.00 0.00 0.00 3.16
1622 5637 2.086610 ACACCAACAGCAAGGGAATT 57.913 45.000 0.00 0.00 0.00 2.17
1637 5898 0.455005 GAATTGCCAAGCAGAGCTCC 59.545 55.000 10.93 0.00 40.61 4.70
1797 6876 3.248602 GCTTCGCTTCTCTTCTTTGTTCA 59.751 43.478 0.00 0.00 0.00 3.18
1802 6881 5.050091 TCGCTTCTCTTCTTTGTTCATTGAC 60.050 40.000 0.00 0.00 0.00 3.18
1803 6882 5.456265 GCTTCTCTTCTTTGTTCATTGACC 58.544 41.667 0.00 0.00 0.00 4.02
1877 7174 1.743252 GCTTCTCTGCTGTTCGGGG 60.743 63.158 0.00 0.00 0.00 5.73
1930 7229 9.591792 TTGATTCATCAGTGTGTAAATAGAGAG 57.408 33.333 0.00 0.00 38.19 3.20
2035 7334 7.835682 TGATCATCCTGGTTATTTCTCAACATT 59.164 33.333 0.00 0.00 0.00 2.71
2060 7359 2.840651 AGGAGTACAAAGTAGCATGGCT 59.159 45.455 0.00 0.00 43.41 4.75
2069 7368 5.048713 ACAAAGTAGCATGGCTAAAACAGAC 60.049 40.000 0.00 0.00 43.07 3.51
2114 7416 4.352595 TGGAAGAATGTTTTACTCCCTCCA 59.647 41.667 0.00 0.00 0.00 3.86
2122 7424 4.262617 GTTTTACTCCCTCCAATCCAGTC 58.737 47.826 0.00 0.00 0.00 3.51
2123 7425 2.176247 TACTCCCTCCAATCCAGTCC 57.824 55.000 0.00 0.00 0.00 3.85
2124 7426 0.119155 ACTCCCTCCAATCCAGTCCA 59.881 55.000 0.00 0.00 0.00 4.02
2125 7427 0.835941 CTCCCTCCAATCCAGTCCAG 59.164 60.000 0.00 0.00 0.00 3.86
2126 7428 0.119155 TCCCTCCAATCCAGTCCAGT 59.881 55.000 0.00 0.00 0.00 4.00
2131 7433 3.385111 CCTCCAATCCAGTCCAGTACTAC 59.615 52.174 0.00 0.00 35.76 2.73
2140 7442 4.082354 CCAGTCCAGTACTACAGTTGTACC 60.082 50.000 18.31 6.47 40.61 3.34
2147 7449 6.461927 CCAGTACTACAGTTGTACCAAGTGAA 60.462 42.308 18.31 0.00 40.61 3.18
2149 7451 4.365723 ACTACAGTTGTACCAAGTGAACG 58.634 43.478 16.43 7.93 0.00 3.95
2178 7480 8.830915 AGTAATATGGATCATAGGGAGTACAG 57.169 38.462 0.00 0.00 29.42 2.74
2179 7481 8.624670 AGTAATATGGATCATAGGGAGTACAGA 58.375 37.037 0.00 0.00 29.42 3.41
2230 7700 3.318839 TCTTCACTGATTGCCAACCAAAG 59.681 43.478 0.00 0.00 36.92 2.77
2240 7710 4.568072 TGCCAACCAAAGAATAGCTCTA 57.432 40.909 0.00 0.00 32.46 2.43
2244 7714 5.396436 GCCAACCAAAGAATAGCTCTACCTA 60.396 44.000 0.00 0.00 32.46 3.08
2343 7813 6.474102 ACAAAACTTGTTATTAGGCAACAACG 59.526 34.615 0.00 0.00 42.22 4.10
2347 7817 2.486203 TGTTATTAGGCAACAACGCTGG 59.514 45.455 0.00 0.00 41.41 4.85
2569 8190 2.419021 CCAATTGCCATTACCTTGCAGG 60.419 50.000 0.00 1.16 42.49 4.85
2582 8203 2.484264 CCTTGCAGGAAAAGGTTACGAG 59.516 50.000 0.00 0.00 39.55 4.18
2584 8205 2.489971 TGCAGGAAAAGGTTACGAGTG 58.510 47.619 0.00 0.00 0.00 3.51
2601 8223 3.624861 CGAGTGAGAAATAATGCAAGCCT 59.375 43.478 0.00 0.00 0.00 4.58
2638 8267 7.923878 GGTAGCCAAACAAAACTTAGAATTTCA 59.076 33.333 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.224324 TCGCTATCGGAGGGGCAC 61.224 66.667 3.19 0.00 38.64 5.01
5 6 3.224324 GTCGCTATCGGAGGGGCA 61.224 66.667 2.75 0.00 42.21 5.36
6 7 4.344474 CGTCGCTATCGGAGGGGC 62.344 72.222 3.19 0.71 39.31 5.80
8 9 3.544167 CTGCGTCGCTATCGGAGGG 62.544 68.421 19.50 0.00 41.61 4.30
9 10 2.050895 CTGCGTCGCTATCGGAGG 60.051 66.667 19.50 0.00 41.61 4.30
10 11 2.727647 GCTGCGTCGCTATCGGAG 60.728 66.667 19.50 7.21 46.39 4.63
11 12 4.607606 CGCTGCGTCGCTATCGGA 62.608 66.667 19.50 0.00 36.13 4.55
27 28 4.444838 TTCCCACCACCGATCGCG 62.445 66.667 10.32 0.00 37.24 5.87
28 29 2.511600 CTTCCCACCACCGATCGC 60.512 66.667 10.32 0.00 0.00 4.58
29 30 2.186903 CCTTCCCACCACCGATCG 59.813 66.667 8.51 8.51 0.00 3.69
30 31 2.124695 GCCTTCCCACCACCGATC 60.125 66.667 0.00 0.00 0.00 3.69
32 33 3.948719 GTGCCTTCCCACCACCGA 61.949 66.667 0.00 0.00 0.00 4.69
35 36 2.668550 GTCGTGCCTTCCCACCAC 60.669 66.667 0.00 0.00 32.10 4.16
36 37 3.948719 GGTCGTGCCTTCCCACCA 61.949 66.667 0.00 0.00 32.10 4.17
37 38 3.901797 CTGGTCGTGCCTTCCCACC 62.902 68.421 1.06 0.00 38.35 4.61
38 39 2.185310 ATCTGGTCGTGCCTTCCCAC 62.185 60.000 1.06 0.00 38.35 4.61
39 40 1.899437 GATCTGGTCGTGCCTTCCCA 61.899 60.000 1.06 0.00 38.35 4.37
42 43 4.094684 CGATCTGGTCGTGCCTTC 57.905 61.111 1.33 0.00 45.19 3.46
51 52 0.247736 GTGCAAGAGGTCGATCTGGT 59.752 55.000 0.91 0.00 0.00 4.00
52 53 0.460987 GGTGCAAGAGGTCGATCTGG 60.461 60.000 0.91 0.00 0.00 3.86
53 54 0.803768 CGGTGCAAGAGGTCGATCTG 60.804 60.000 0.91 0.00 0.00 2.90
54 55 1.513158 CGGTGCAAGAGGTCGATCT 59.487 57.895 0.00 0.00 0.00 2.75
55 56 1.519455 CCGGTGCAAGAGGTCGATC 60.519 63.158 0.00 0.00 0.00 3.69
56 57 2.579201 CCGGTGCAAGAGGTCGAT 59.421 61.111 0.00 0.00 0.00 3.59
81 82 2.584391 AAGAGAAACGAGGGCGGCT 61.584 57.895 9.56 0.00 43.17 5.52
84 85 0.245539 TACCAAGAGAAACGAGGGCG 59.754 55.000 0.00 0.00 44.79 6.13
85 86 2.347731 CTTACCAAGAGAAACGAGGGC 58.652 52.381 0.00 0.00 0.00 5.19
86 87 2.935676 GCCTTACCAAGAGAAACGAGGG 60.936 54.545 0.00 0.00 0.00 4.30
87 88 2.028020 AGCCTTACCAAGAGAAACGAGG 60.028 50.000 0.00 0.00 0.00 4.63
88 89 3.320673 AGCCTTACCAAGAGAAACGAG 57.679 47.619 0.00 0.00 0.00 4.18
89 90 4.877378 TTAGCCTTACCAAGAGAAACGA 57.123 40.909 0.00 0.00 0.00 3.85
90 91 7.605410 TTAATTAGCCTTACCAAGAGAAACG 57.395 36.000 0.00 0.00 0.00 3.60
91 92 8.957466 ACATTAATTAGCCTTACCAAGAGAAAC 58.043 33.333 0.00 0.00 0.00 2.78
92 93 8.956426 CACATTAATTAGCCTTACCAAGAGAAA 58.044 33.333 0.00 0.00 0.00 2.52
94 95 7.857456 TCACATTAATTAGCCTTACCAAGAGA 58.143 34.615 0.00 0.00 0.00 3.10
96 97 8.902806 CAATCACATTAATTAGCCTTACCAAGA 58.097 33.333 0.00 0.00 0.00 3.02
98 99 8.815565 TCAATCACATTAATTAGCCTTACCAA 57.184 30.769 0.00 0.00 0.00 3.67
100 101 7.363431 GCTCAATCACATTAATTAGCCTTACC 58.637 38.462 0.00 0.00 0.00 2.85
102 103 6.989759 TCGCTCAATCACATTAATTAGCCTTA 59.010 34.615 0.00 0.00 0.00 2.69
103 104 5.822519 TCGCTCAATCACATTAATTAGCCTT 59.177 36.000 0.00 0.00 0.00 4.35
104 105 5.368145 TCGCTCAATCACATTAATTAGCCT 58.632 37.500 0.00 0.00 0.00 4.58
105 106 5.673337 TCGCTCAATCACATTAATTAGCC 57.327 39.130 0.00 0.00 0.00 3.93
106 107 9.831737 ATTAATCGCTCAATCACATTAATTAGC 57.168 29.630 0.00 0.00 29.27 3.09
108 109 9.611284 GCATTAATCGCTCAATCACATTAATTA 57.389 29.630 0.00 0.00 30.59 1.40
109 110 8.355169 AGCATTAATCGCTCAATCACATTAATT 58.645 29.630 6.58 0.00 33.35 1.40
112 113 6.866010 AGCATTAATCGCTCAATCACATTA 57.134 33.333 6.58 0.00 33.35 1.90
113 114 5.762825 AGCATTAATCGCTCAATCACATT 57.237 34.783 6.58 0.00 33.35 2.71
123 124 3.318017 GTCCGTATGAGCATTAATCGCT 58.682 45.455 10.83 10.83 44.10 4.93
124 125 2.090658 CGTCCGTATGAGCATTAATCGC 59.909 50.000 0.00 2.73 0.00 4.58
126 127 3.650139 ACCGTCCGTATGAGCATTAATC 58.350 45.455 0.00 0.00 0.00 1.75
127 128 3.746045 ACCGTCCGTATGAGCATTAAT 57.254 42.857 0.00 0.00 0.00 1.40
128 129 3.530265 AACCGTCCGTATGAGCATTAA 57.470 42.857 0.00 0.00 0.00 1.40
129 130 4.859304 ATAACCGTCCGTATGAGCATTA 57.141 40.909 0.00 0.00 0.00 1.90
130 131 3.746045 ATAACCGTCCGTATGAGCATT 57.254 42.857 0.00 0.00 0.00 3.56
132 133 3.191669 CAAATAACCGTCCGTATGAGCA 58.808 45.455 0.00 0.00 0.00 4.26
133 134 3.192466 ACAAATAACCGTCCGTATGAGC 58.808 45.455 0.00 0.00 0.00 4.26
134 135 5.579511 AGAAACAAATAACCGTCCGTATGAG 59.420 40.000 0.00 0.00 0.00 2.90
136 137 5.789710 AGAAACAAATAACCGTCCGTATG 57.210 39.130 0.00 0.00 0.00 2.39
137 138 7.903995 TTAAGAAACAAATAACCGTCCGTAT 57.096 32.000 0.00 0.00 0.00 3.06
138 139 7.903995 ATTAAGAAACAAATAACCGTCCGTA 57.096 32.000 0.00 0.00 0.00 4.02
140 141 9.777575 ATTAATTAAGAAACAAATAACCGTCCG 57.222 29.630 3.94 0.00 0.00 4.79
250 251 6.826231 TGTTGGCAGCAAGCTATTTAGTAATA 59.174 34.615 0.00 0.00 44.79 0.98
260 261 0.038021 TCCATGTTGGCAGCAAGCTA 59.962 50.000 8.44 0.00 44.79 3.32
262 263 0.033781 TTTCCATGTTGGCAGCAAGC 59.966 50.000 8.44 0.00 44.65 4.01
263 264 1.342174 ACTTTCCATGTTGGCAGCAAG 59.658 47.619 8.44 3.50 37.47 4.01
265 266 1.340889 GAACTTTCCATGTTGGCAGCA 59.659 47.619 6.47 6.47 37.47 4.41
266 267 1.615392 AGAACTTTCCATGTTGGCAGC 59.385 47.619 0.00 0.00 37.47 5.25
267 268 2.886523 TCAGAACTTTCCATGTTGGCAG 59.113 45.455 0.00 0.00 37.47 4.85
268 269 2.942804 TCAGAACTTTCCATGTTGGCA 58.057 42.857 0.00 0.00 37.47 4.92
273 275 3.703001 ACGGATCAGAACTTTCCATGT 57.297 42.857 0.00 0.00 0.00 3.21
306 308 1.606994 GCGTCACCCTATCACACAACA 60.607 52.381 0.00 0.00 0.00 3.33
316 318 2.610232 GGTTTAGTTTCGCGTCACCCTA 60.610 50.000 5.77 0.00 0.00 3.53
339 341 1.226311 GTCCCCTTCCCCAATCTCAT 58.774 55.000 0.00 0.00 0.00 2.90
342 344 1.466858 TTTGTCCCCTTCCCCAATCT 58.533 50.000 0.00 0.00 0.00 2.40
344 346 2.805290 TTTTTGTCCCCTTCCCCAAT 57.195 45.000 0.00 0.00 0.00 3.16
389 391 4.095782 CACGGTTTATTTTCGTCCCATCAT 59.904 41.667 0.00 0.00 34.73 2.45
392 394 3.677190 TCACGGTTTATTTTCGTCCCAT 58.323 40.909 0.00 0.00 34.73 4.00
415 417 9.132923 CCTAATGTCTGAGTTGGTAGAATAGTA 57.867 37.037 0.00 0.00 0.00 1.82
416 418 7.839705 TCCTAATGTCTGAGTTGGTAGAATAGT 59.160 37.037 0.00 0.00 0.00 2.12
417 419 8.239038 TCCTAATGTCTGAGTTGGTAGAATAG 57.761 38.462 0.00 0.00 0.00 1.73
418 420 7.839705 ACTCCTAATGTCTGAGTTGGTAGAATA 59.160 37.037 0.00 0.00 35.93 1.75
420 422 6.017192 ACTCCTAATGTCTGAGTTGGTAGAA 58.983 40.000 0.00 0.00 35.93 2.10
431 603 4.469657 AGCCTCTCTACTCCTAATGTCTG 58.530 47.826 0.00 0.00 0.00 3.51
465 637 0.036306 TTGCTTCTTCCCCGACCTTC 59.964 55.000 0.00 0.00 0.00 3.46
467 639 1.128188 ACTTGCTTCTTCCCCGACCT 61.128 55.000 0.00 0.00 0.00 3.85
470 642 0.250727 CCAACTTGCTTCTTCCCCGA 60.251 55.000 0.00 0.00 0.00 5.14
471 643 1.244019 CCCAACTTGCTTCTTCCCCG 61.244 60.000 0.00 0.00 0.00 5.73
473 645 1.995376 TTCCCAACTTGCTTCTTCCC 58.005 50.000 0.00 0.00 0.00 3.97
474 646 3.306294 CCATTTCCCAACTTGCTTCTTCC 60.306 47.826 0.00 0.00 0.00 3.46
475 647 3.862264 GCCATTTCCCAACTTGCTTCTTC 60.862 47.826 0.00 0.00 0.00 2.87
476 648 2.037641 GCCATTTCCCAACTTGCTTCTT 59.962 45.455 0.00 0.00 0.00 2.52
479 651 1.345415 CTGCCATTTCCCAACTTGCTT 59.655 47.619 0.00 0.00 0.00 3.91
480 652 0.971386 CTGCCATTTCCCAACTTGCT 59.029 50.000 0.00 0.00 0.00 3.91
482 654 0.609662 CCCTGCCATTTCCCAACTTG 59.390 55.000 0.00 0.00 0.00 3.16
484 656 1.079073 CCCCTGCCATTTCCCAACT 59.921 57.895 0.00 0.00 0.00 3.16
485 657 0.544120 TTCCCCTGCCATTTCCCAAC 60.544 55.000 0.00 0.00 0.00 3.77
487 659 0.417035 AATTCCCCTGCCATTTCCCA 59.583 50.000 0.00 0.00 0.00 4.37
488 660 1.486310 GAAATTCCCCTGCCATTTCCC 59.514 52.381 0.00 0.00 32.80 3.97
489 661 2.470990 AGAAATTCCCCTGCCATTTCC 58.529 47.619 0.00 0.00 37.55 3.13
493 665 2.502745 TCCTAGAAATTCCCCTGCCAT 58.497 47.619 0.00 0.00 0.00 4.40
494 666 1.979809 TCCTAGAAATTCCCCTGCCA 58.020 50.000 0.00 0.00 0.00 4.92
495 667 3.024547 GTTTCCTAGAAATTCCCCTGCC 58.975 50.000 0.00 0.00 0.00 4.85
496 668 3.697166 TGTTTCCTAGAAATTCCCCTGC 58.303 45.455 0.00 0.00 0.00 4.85
501 673 8.251026 CCTGGTAAAATGTTTCCTAGAAATTCC 58.749 37.037 0.00 0.00 0.00 3.01
502 674 9.020731 TCCTGGTAAAATGTTTCCTAGAAATTC 57.979 33.333 0.00 0.00 0.00 2.17
505 677 7.751646 TCTCCTGGTAAAATGTTTCCTAGAAA 58.248 34.615 0.00 0.00 0.00 2.52
508 680 7.829211 TCATTCTCCTGGTAAAATGTTTCCTAG 59.171 37.037 13.83 0.00 32.31 3.02
510 682 6.552008 TCATTCTCCTGGTAAAATGTTTCCT 58.448 36.000 13.83 0.00 32.31 3.36
512 684 7.976175 GGAATCATTCTCCTGGTAAAATGTTTC 59.024 37.037 19.71 19.71 37.23 2.78
516 744 6.040166 CAGGGAATCATTCTCCTGGTAAAATG 59.960 42.308 19.85 10.24 40.98 2.32
526 754 3.652057 TCCAACAGGGAATCATTCTCC 57.348 47.619 0.00 0.00 44.80 3.71
536 764 1.004277 GCCACATAAGTCCAACAGGGA 59.996 52.381 0.00 0.00 45.89 4.20
537 765 1.463674 GCCACATAAGTCCAACAGGG 58.536 55.000 0.00 0.00 38.37 4.45
538 766 1.463674 GGCCACATAAGTCCAACAGG 58.536 55.000 0.00 0.00 0.00 4.00
540 768 1.072266 AGGGCCACATAAGTCCAACA 58.928 50.000 6.18 0.00 0.00 3.33
542 770 1.072266 ACAGGGCCACATAAGTCCAA 58.928 50.000 6.18 0.00 0.00 3.53
543 771 1.959710 TACAGGGCCACATAAGTCCA 58.040 50.000 6.18 0.00 0.00 4.02
544 772 3.477530 GATTACAGGGCCACATAAGTCC 58.522 50.000 6.18 0.00 0.00 3.85
545 773 3.131396 CGATTACAGGGCCACATAAGTC 58.869 50.000 6.18 0.00 0.00 3.01
546 774 2.504175 ACGATTACAGGGCCACATAAGT 59.496 45.455 6.18 0.00 0.00 2.24
547 775 3.194005 ACGATTACAGGGCCACATAAG 57.806 47.619 6.18 0.00 0.00 1.73
548 776 3.637911 AACGATTACAGGGCCACATAA 57.362 42.857 6.18 0.99 0.00 1.90
549 777 4.757019 TTAACGATTACAGGGCCACATA 57.243 40.909 6.18 0.00 0.00 2.29
556 784 9.849166 ATAACAATGTTTTTAACGATTACAGGG 57.151 29.630 3.17 0.00 0.00 4.45
617 845 9.785982 GCCTCATCTCTTTAAATAATACTTCCT 57.214 33.333 0.00 0.00 0.00 3.36
618 846 9.561069 TGCCTCATCTCTTTAAATAATACTTCC 57.439 33.333 0.00 0.00 0.00 3.46
667 4357 9.803315 TGTGTTTACATTGCACAAGTATTTTTA 57.197 25.926 0.00 0.00 39.76 1.52
670 4360 6.699642 GGTGTGTTTACATTGCACAAGTATTT 59.300 34.615 0.00 0.00 43.51 1.40
673 4363 4.260825 CGGTGTGTTTACATTGCACAAGTA 60.261 41.667 0.00 0.00 43.51 2.24
695 4385 4.814294 CCGCTTCCTCCGGTTCCG 62.814 72.222 0.00 4.08 40.84 4.30
703 4393 4.168291 CAGGGGAGCCGCTTCCTC 62.168 72.222 17.74 8.94 38.05 3.71
704 4394 4.722535 TCAGGGGAGCCGCTTCCT 62.723 66.667 17.74 13.21 37.10 3.36
705 4395 4.475135 GTCAGGGGAGCCGCTTCC 62.475 72.222 9.56 9.56 37.10 3.46
706 4396 1.686325 TATGTCAGGGGAGCCGCTTC 61.686 60.000 3.01 0.00 37.10 3.86
707 4397 1.689233 TATGTCAGGGGAGCCGCTT 60.689 57.895 3.01 0.00 37.10 4.68
708 4398 2.041922 TATGTCAGGGGAGCCGCT 60.042 61.111 0.00 0.00 39.92 5.52
709 4399 2.044806 ATGTATGTCAGGGGAGCCGC 62.045 60.000 0.00 0.00 0.00 6.53
710 4400 0.034059 GATGTATGTCAGGGGAGCCG 59.966 60.000 0.00 0.00 0.00 5.52
711 4401 1.131638 TGATGTATGTCAGGGGAGCC 58.868 55.000 0.00 0.00 0.00 4.70
712 4402 1.202698 GGTGATGTATGTCAGGGGAGC 60.203 57.143 0.00 0.00 0.00 4.70
713 4403 2.103771 CAGGTGATGTATGTCAGGGGAG 59.896 54.545 0.00 0.00 0.00 4.30
714 4404 2.118679 CAGGTGATGTATGTCAGGGGA 58.881 52.381 0.00 0.00 0.00 4.81
715 4405 1.475751 GCAGGTGATGTATGTCAGGGG 60.476 57.143 0.00 0.00 0.00 4.79
716 4406 1.210234 TGCAGGTGATGTATGTCAGGG 59.790 52.381 0.00 0.00 0.00 4.45
717 4407 2.093288 ACTGCAGGTGATGTATGTCAGG 60.093 50.000 19.93 0.00 0.00 3.86
718 4408 3.257469 ACTGCAGGTGATGTATGTCAG 57.743 47.619 19.93 0.00 0.00 3.51
719 4409 3.244526 ACAACTGCAGGTGATGTATGTCA 60.245 43.478 37.55 0.00 0.00 3.58
720 4410 3.125829 CACAACTGCAGGTGATGTATGTC 59.874 47.826 37.55 0.00 37.18 3.06
721 4411 3.076621 CACAACTGCAGGTGATGTATGT 58.923 45.455 37.55 11.11 37.18 2.29
722 4412 2.421073 CCACAACTGCAGGTGATGTATG 59.579 50.000 37.55 23.50 37.18 2.39
723 4413 2.715046 CCACAACTGCAGGTGATGTAT 58.285 47.619 37.55 12.75 37.18 2.29
724 4414 1.881925 GCCACAACTGCAGGTGATGTA 60.882 52.381 37.55 0.00 37.18 2.29
725 4415 1.174712 GCCACAACTGCAGGTGATGT 61.175 55.000 37.55 22.17 37.18 3.06
726 4416 1.174078 TGCCACAACTGCAGGTGATG 61.174 55.000 37.55 27.69 37.18 3.07
727 4417 1.151221 TGCCACAACTGCAGGTGAT 59.849 52.632 37.55 18.98 37.18 3.06
728 4418 1.823470 GTGCCACAACTGCAGGTGA 60.823 57.895 37.55 13.17 39.87 4.02
729 4419 1.825191 AGTGCCACAACTGCAGGTG 60.825 57.895 30.07 30.07 39.87 4.00
730 4420 1.825191 CAGTGCCACAACTGCAGGT 60.825 57.895 19.93 9.19 41.05 4.00
731 4421 3.036577 CAGTGCCACAACTGCAGG 58.963 61.111 19.93 3.21 41.05 4.85
743 4433 2.034687 AGACCCACATGGCAGTGC 59.965 61.111 6.55 6.55 38.18 4.40
744 4434 0.538057 AACAGACCCACATGGCAGTG 60.538 55.000 0.00 9.29 37.83 3.66
745 4435 0.185901 AAACAGACCCACATGGCAGT 59.814 50.000 0.00 0.00 37.83 4.40
746 4436 1.331214 AAAACAGACCCACATGGCAG 58.669 50.000 0.00 0.00 37.83 4.85
747 4437 1.686052 GAAAAACAGACCCACATGGCA 59.314 47.619 0.00 0.00 37.83 4.92
748 4438 1.686052 TGAAAAACAGACCCACATGGC 59.314 47.619 0.00 0.00 37.83 4.40
749 4439 4.039004 TCATTGAAAAACAGACCCACATGG 59.961 41.667 0.00 0.00 41.37 3.66
750 4440 5.199024 TCATTGAAAAACAGACCCACATG 57.801 39.130 0.00 0.00 0.00 3.21
751 4441 4.262164 GCTCATTGAAAAACAGACCCACAT 60.262 41.667 0.00 0.00 0.00 3.21
752 4442 3.068024 GCTCATTGAAAAACAGACCCACA 59.932 43.478 0.00 0.00 0.00 4.17
753 4443 3.552890 GGCTCATTGAAAAACAGACCCAC 60.553 47.826 0.00 0.00 0.00 4.61
754 4444 2.627699 GGCTCATTGAAAAACAGACCCA 59.372 45.455 0.00 0.00 0.00 4.51
755 4445 2.029020 GGGCTCATTGAAAAACAGACCC 60.029 50.000 0.00 0.00 31.89 4.46
756 4446 2.627699 TGGGCTCATTGAAAAACAGACC 59.372 45.455 0.00 0.00 37.27 3.85
757 4447 3.552890 GGTGGGCTCATTGAAAAACAGAC 60.553 47.826 0.00 0.00 0.00 3.51
758 4448 2.627699 GGTGGGCTCATTGAAAAACAGA 59.372 45.455 0.00 0.00 0.00 3.41
759 4449 2.629617 AGGTGGGCTCATTGAAAAACAG 59.370 45.455 0.00 0.00 0.00 3.16
760 4450 2.364970 CAGGTGGGCTCATTGAAAAACA 59.635 45.455 0.00 0.00 0.00 2.83
761 4451 2.365293 ACAGGTGGGCTCATTGAAAAAC 59.635 45.455 7.92 0.00 0.00 2.43
762 4452 2.627699 GACAGGTGGGCTCATTGAAAAA 59.372 45.455 7.92 0.00 0.00 1.94
763 4453 2.238521 GACAGGTGGGCTCATTGAAAA 58.761 47.619 7.92 0.00 0.00 2.29
764 4454 1.144708 TGACAGGTGGGCTCATTGAAA 59.855 47.619 7.92 0.00 0.00 2.69
765 4455 0.770499 TGACAGGTGGGCTCATTGAA 59.230 50.000 7.92 0.00 0.00 2.69
766 4456 0.325933 CTGACAGGTGGGCTCATTGA 59.674 55.000 7.92 0.00 0.00 2.57
767 4457 0.679002 CCTGACAGGTGGGCTCATTG 60.679 60.000 13.84 0.00 0.00 2.82
768 4458 1.687612 CCTGACAGGTGGGCTCATT 59.312 57.895 13.84 0.00 0.00 2.57
769 4459 2.304056 CCCTGACAGGTGGGCTCAT 61.304 63.158 20.24 0.00 36.61 2.90
770 4460 2.770868 ATCCCTGACAGGTGGGCTCA 62.771 60.000 20.24 0.00 43.04 4.26
771 4461 1.997874 ATCCCTGACAGGTGGGCTC 60.998 63.158 20.24 0.00 43.04 4.70
772 4462 2.125912 ATCCCTGACAGGTGGGCT 59.874 61.111 20.24 0.00 43.04 5.19
773 4463 2.273449 CATCCCTGACAGGTGGGC 59.727 66.667 20.24 0.00 43.04 5.36
774 4464 1.207488 TTCCATCCCTGACAGGTGGG 61.207 60.000 24.18 19.31 44.66 4.61
775 4465 0.035056 GTTCCATCCCTGACAGGTGG 60.035 60.000 20.50 20.50 31.93 4.61
776 4466 0.035056 GGTTCCATCCCTGACAGGTG 60.035 60.000 20.24 12.39 31.93 4.00
777 4467 1.553690 CGGTTCCATCCCTGACAGGT 61.554 60.000 20.24 0.00 31.93 4.00
778 4468 1.221840 CGGTTCCATCCCTGACAGG 59.778 63.158 15.15 15.15 34.30 4.00
779 4469 1.450312 GCGGTTCCATCCCTGACAG 60.450 63.158 0.00 0.00 0.00 3.51
780 4470 2.220586 TGCGGTTCCATCCCTGACA 61.221 57.895 0.00 0.00 0.00 3.58
781 4471 1.745489 GTGCGGTTCCATCCCTGAC 60.745 63.158 0.00 0.00 0.00 3.51
782 4472 2.668632 GTGCGGTTCCATCCCTGA 59.331 61.111 0.00 0.00 0.00 3.86
783 4473 2.438434 GGTGCGGTTCCATCCCTG 60.438 66.667 0.00 0.00 0.00 4.45
784 4474 3.728373 GGGTGCGGTTCCATCCCT 61.728 66.667 0.00 0.00 35.63 4.20
785 4475 3.728373 AGGGTGCGGTTCCATCCC 61.728 66.667 0.00 0.00 36.63 3.85
786 4476 2.438434 CAGGGTGCGGTTCCATCC 60.438 66.667 0.00 0.00 36.19 3.51
787 4477 3.134127 GCAGGGTGCGGTTCCATC 61.134 66.667 0.00 0.00 31.71 3.51
788 4478 4.740822 GGCAGGGTGCGGTTCCAT 62.741 66.667 0.00 0.00 46.21 3.41
804 4494 4.821589 GGCTCCTCTGCCGTTCGG 62.822 72.222 6.90 6.90 43.74 4.30
811 4501 3.844090 GGGACGAGGCTCCTCTGC 61.844 72.222 9.32 6.40 40.69 4.26
812 4502 3.151022 GGGGACGAGGCTCCTCTG 61.151 72.222 9.32 9.55 40.69 3.35
969 4659 4.002906 TGCTCTGTTTCACGACCTTTAT 57.997 40.909 0.00 0.00 0.00 1.40
994 4685 8.481314 TGTATGGATGGATATATTCTTGCTCTC 58.519 37.037 0.97 0.00 0.00 3.20
1048 4759 0.955919 CAACGGAAGGACCTCAAGGC 60.956 60.000 0.00 0.00 39.32 4.35
1175 4886 1.006571 GTCGTCGGAGTTGCAGGAA 60.007 57.895 0.00 0.00 0.00 3.36
1182 4893 2.675056 CCTCGTCGTCGTCGGAGTT 61.675 63.158 11.74 0.00 38.33 3.01
1195 4906 2.032071 CTGAAAACCGGGCCTCGT 59.968 61.111 6.32 0.00 37.11 4.18
1196 4907 2.033194 GTCTGAAAACCGGGCCTCG 61.033 63.158 6.32 4.41 38.88 4.63
1197 4908 2.033194 CGTCTGAAAACCGGGCCTC 61.033 63.158 6.32 0.00 0.00 4.70
1361 5078 5.292834 GGCTGCTGCACATACATACATATAG 59.707 44.000 17.89 0.00 41.91 1.31
1415 5258 4.455190 CCTTTCCTGCAAAGAGAAGAAGAG 59.545 45.833 0.00 0.00 44.02 2.85
1460 5311 2.372690 CGCGAACGACTGGGACTTG 61.373 63.158 0.00 0.00 43.93 3.16
1522 5373 3.195825 CGACTTGATCTTCTTGTAGGGGT 59.804 47.826 0.00 0.00 0.00 4.95
1571 5456 1.378762 GGGGCAAGCTGTCTGGTAA 59.621 57.895 0.00 0.00 0.00 2.85
1572 5457 2.954684 CGGGGCAAGCTGTCTGGTA 61.955 63.158 0.00 0.00 0.00 3.25
1797 6876 5.279657 GCCAAGAAAAATCCTCAAGGTCAAT 60.280 40.000 0.00 0.00 36.34 2.57
1802 6881 2.094545 CCGCCAAGAAAAATCCTCAAGG 60.095 50.000 0.00 0.00 0.00 3.61
1803 6882 2.094545 CCCGCCAAGAAAAATCCTCAAG 60.095 50.000 0.00 0.00 0.00 3.02
1877 7174 5.344743 TGTCCTCCTGAACAATATGTCTC 57.655 43.478 0.00 0.00 0.00 3.36
2035 7334 5.730550 CCATGCTACTTTGTACTCCTTGTA 58.269 41.667 0.00 0.00 0.00 2.41
2060 7359 4.798882 ACCCAAGAATGGTGTCTGTTTTA 58.201 39.130 0.00 0.00 46.01 1.52
2084 7386 7.148171 GGGAGTAAAACATTCTTCCATCTCTTG 60.148 40.741 0.00 0.00 0.00 3.02
2085 7387 6.887002 GGGAGTAAAACATTCTTCCATCTCTT 59.113 38.462 0.00 0.00 0.00 2.85
2114 7416 4.838986 ACAACTGTAGTACTGGACTGGATT 59.161 41.667 5.39 0.00 39.39 3.01
2140 7442 6.961359 TCCATATTACTTGTCGTTCACTTG 57.039 37.500 0.00 0.00 0.00 3.16
2147 7449 6.724441 TCCCTATGATCCATATTACTTGTCGT 59.276 38.462 0.00 0.00 0.00 4.34
2149 7451 8.140112 ACTCCCTATGATCCATATTACTTGTC 57.860 38.462 0.00 0.00 0.00 3.18
2230 7700 7.170658 CACTTGAAGCATTAGGTAGAGCTATTC 59.829 40.741 0.00 0.00 36.07 1.75
2240 7710 7.502561 AGAGTTTTAACACTTGAAGCATTAGGT 59.497 33.333 0.00 0.00 0.00 3.08
2333 7803 4.974721 CCCCCAGCGTTGTTGCCT 62.975 66.667 0.00 0.00 34.65 4.75
2343 7813 0.394899 CAGGATTGTCTTCCCCCAGC 60.395 60.000 0.00 0.00 36.35 4.85
2499 8065 0.987294 AGCTAGCATCACTGGGTGTT 59.013 50.000 18.83 0.00 36.08 3.32
2569 8190 7.692705 GCATTATTTCTCACTCGTAACCTTTTC 59.307 37.037 0.00 0.00 0.00 2.29
2582 8203 4.884164 ACCTAGGCTTGCATTATTTCTCAC 59.116 41.667 9.30 0.00 0.00 3.51
2584 8205 6.292150 ACTACCTAGGCTTGCATTATTTCTC 58.708 40.000 9.30 0.00 0.00 2.87
2601 8223 6.623979 TTGTTTGGCTACCAATACTACCTA 57.376 37.500 0.00 0.00 43.55 3.08
2625 8254 7.447238 TCCGTTGAATCCTTGAAATTCTAAGTT 59.553 33.333 0.00 0.00 34.80 2.66
2626 8255 6.940298 TCCGTTGAATCCTTGAAATTCTAAGT 59.060 34.615 0.00 0.00 34.80 2.24
2627 8256 7.377766 TCCGTTGAATCCTTGAAATTCTAAG 57.622 36.000 0.00 0.00 34.80 2.18
2628 8257 7.574967 GCTTCCGTTGAATCCTTGAAATTCTAA 60.575 37.037 0.00 0.00 34.80 2.10
2629 8258 6.128007 GCTTCCGTTGAATCCTTGAAATTCTA 60.128 38.462 0.00 0.00 34.80 2.10
2630 8259 5.335976 GCTTCCGTTGAATCCTTGAAATTCT 60.336 40.000 0.00 0.00 34.80 2.40
2631 8260 4.859245 GCTTCCGTTGAATCCTTGAAATTC 59.141 41.667 0.00 0.00 34.40 2.17
2638 8267 3.610911 CCTAAGCTTCCGTTGAATCCTT 58.389 45.455 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.