Multiple sequence alignment - TraesCS3B01G309600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G309600 chr3B 100.000 3569 0 0 1 3569 498328271 498324703 0.000000e+00 6591
1 TraesCS3B01G309600 chr3B 100.000 299 0 0 3834 4132 498324438 498324140 1.680000e-153 553
2 TraesCS3B01G309600 chr3D 92.956 3095 113 47 4 3037 382632533 382629483 0.000000e+00 4410
3 TraesCS3B01G309600 chr3D 90.191 418 27 4 3164 3569 382626127 382625712 2.190000e-147 532
4 TraesCS3B01G309600 chr3A 88.892 3169 193 53 1 3100 505526693 505523615 0.000000e+00 3755
5 TraesCS3B01G309600 chr3A 87.569 362 33 6 3214 3566 505521992 505521634 3.840000e-110 409
6 TraesCS3B01G309600 chr1D 82.967 182 27 3 1997 2176 432808563 432808384 1.190000e-35 161
7 TraesCS3B01G309600 chr1A 82.703 185 25 5 1997 2176 531282227 531282045 1.540000e-34 158
8 TraesCS3B01G309600 chr1B 82.418 182 28 3 1997 2176 584325426 584325247 5.530000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G309600 chr3B 498324140 498328271 4131 True 3572 6591 100.0000 1 4132 2 chr3B.!!$R1 4131
1 TraesCS3B01G309600 chr3D 382625712 382632533 6821 True 2471 4410 91.5735 4 3569 2 chr3D.!!$R1 3565
2 TraesCS3B01G309600 chr3A 505521634 505526693 5059 True 2082 3755 88.2305 1 3566 2 chr3A.!!$R1 3565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 538 1.376249 ATCCCTCTCCCTCTCCCTCC 61.376 65.0 0.00 0.00 0.0 4.30 F
1403 1514 0.684535 TGTTCTTGATCAGCGTCCCA 59.315 50.0 0.00 0.00 0.0 4.37 F
2251 2377 0.302589 CGATCACGTGTCGACCGATA 59.697 55.0 25.89 16.19 41.4 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 1782 0.172803 AGCGACGTTTAGCCCACTAG 59.827 55.0 7.77 0.00 0.00 2.57 R
2917 3045 0.108992 TAATCTCTTGCCGCGTCGTT 60.109 50.0 4.92 0.00 0.00 3.85 R
3397 6889 0.772926 CATCGCGTACGCTTCTCATC 59.227 55.0 34.69 6.93 39.84 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
388 462 1.811679 GCGCTACCAGTCTGCTTCC 60.812 63.158 0.00 0.00 0.00 3.46
464 538 1.376249 ATCCCTCTCCCTCTCCCTCC 61.376 65.000 0.00 0.00 0.00 4.30
489 563 1.513836 CCCGCCCGCTAGACTAGTAC 61.514 65.000 11.15 0.00 0.00 2.73
809 896 8.784043 CCCTTTTCCATTCTAATTAATACTCCG 58.216 37.037 0.00 0.00 0.00 4.63
901 1000 3.846588 AGGTTTCTCCTTCCATAGCTTCA 59.153 43.478 0.00 0.00 45.67 3.02
932 1031 3.694043 AGCTCCTTTTCTCTCAACTCC 57.306 47.619 0.00 0.00 0.00 3.85
1005 1104 1.486211 GCTAAGTACTGCCCTCTCCA 58.514 55.000 0.00 0.00 0.00 3.86
1007 1106 2.436173 GCTAAGTACTGCCCTCTCCATT 59.564 50.000 0.00 0.00 0.00 3.16
1026 1125 7.989741 TCTCCATTTGAGATTCTTCATCTTACC 59.010 37.037 0.00 0.00 45.29 2.85
1029 1128 7.042187 CCATTTGAGATTCTTCATCTTACCGAG 60.042 40.741 0.00 0.00 42.92 4.63
1035 1134 3.596214 TCTTCATCTTACCGAGGTTTGC 58.404 45.455 0.00 0.00 0.00 3.68
1036 1135 2.004583 TCATCTTACCGAGGTTTGCG 57.995 50.000 0.00 0.00 0.00 4.85
1038 1137 2.073816 CATCTTACCGAGGTTTGCGTT 58.926 47.619 0.00 0.00 0.00 4.84
1039 1138 1.504359 TCTTACCGAGGTTTGCGTTG 58.496 50.000 0.00 0.00 0.00 4.10
1040 1139 1.068895 TCTTACCGAGGTTTGCGTTGA 59.931 47.619 0.00 0.00 0.00 3.18
1042 1141 0.940519 TACCGAGGTTTGCGTTGACG 60.941 55.000 0.00 0.00 43.27 4.35
1058 1169 0.868177 GACGCGCTAGCTTCTTCCTC 60.868 60.000 13.93 0.00 42.32 3.71
1062 1173 1.139947 GCTAGCTTCTTCCTCGCGT 59.860 57.895 7.70 0.00 0.00 6.01
1086 1197 2.512515 GTGTCCGCAGAGATGGGC 60.513 66.667 0.00 0.00 0.00 5.36
1239 1350 0.900182 TGAAGCAGAGGAAGAGCGGA 60.900 55.000 0.00 0.00 0.00 5.54
1396 1507 5.053145 GCTACCTGGTATGTTCTTGATCAG 58.947 45.833 7.07 0.00 0.00 2.90
1398 1509 2.868583 CCTGGTATGTTCTTGATCAGCG 59.131 50.000 0.00 0.00 0.00 5.18
1403 1514 0.684535 TGTTCTTGATCAGCGTCCCA 59.315 50.000 0.00 0.00 0.00 4.37
1461 1579 4.833478 AGTTGGTTGAGATACTGCTGAT 57.167 40.909 0.00 0.00 0.00 2.90
1507 1625 8.131100 CGGCTATGTTCATCATTTCTTGTTATT 58.869 33.333 0.00 0.00 37.91 1.40
1513 1631 3.398954 TCATTTCTTGTTATTCGGCGC 57.601 42.857 0.00 0.00 0.00 6.53
1611 1729 3.963428 AGTGGATAGGTTCACACTGTC 57.037 47.619 0.00 0.00 42.14 3.51
1664 1782 6.741358 GCTCGTTTTGTATTATCTGTTTGGAC 59.259 38.462 0.00 0.00 0.00 4.02
1720 1838 2.827921 GCTGGTCATGTTCCTTTCCATT 59.172 45.455 10.06 0.00 0.00 3.16
1722 1840 4.142381 GCTGGTCATGTTCCTTTCCATTAC 60.142 45.833 10.06 0.00 0.00 1.89
1732 1850 3.071892 TCCTTTCCATTACGGACAGTTGT 59.928 43.478 0.00 0.00 46.36 3.32
1755 1876 7.562135 TGTTAGTTGTTAACTCTTCCTCTGTT 58.438 34.615 7.22 0.00 41.77 3.16
1816 1937 1.732809 GTTCTTTACTCTGCTTCGGGC 59.267 52.381 0.00 0.00 42.22 6.13
1862 1987 3.926058 ATAAGCCCTATGTTGGTTCGT 57.074 42.857 0.00 0.00 0.00 3.85
1924 2050 4.889832 CCTATTTGGCTAAGCTGAGTTG 57.110 45.455 0.00 0.00 0.00 3.16
2043 2169 0.997932 GATCACTCGTCAAGCTGCAG 59.002 55.000 10.11 10.11 0.00 4.41
2184 2310 2.380064 TGGAACAGGTCAGGCATTTT 57.620 45.000 0.00 0.00 0.00 1.82
2185 2311 2.238521 TGGAACAGGTCAGGCATTTTC 58.761 47.619 0.00 0.00 0.00 2.29
2186 2312 2.238521 GGAACAGGTCAGGCATTTTCA 58.761 47.619 0.00 0.00 0.00 2.69
2187 2313 2.029918 GGAACAGGTCAGGCATTTTCAC 60.030 50.000 0.00 0.00 0.00 3.18
2188 2314 2.664402 ACAGGTCAGGCATTTTCACT 57.336 45.000 0.00 0.00 0.00 3.41
2189 2315 2.949447 ACAGGTCAGGCATTTTCACTT 58.051 42.857 0.00 0.00 0.00 3.16
2190 2316 4.098914 ACAGGTCAGGCATTTTCACTTA 57.901 40.909 0.00 0.00 0.00 2.24
2191 2317 3.821033 ACAGGTCAGGCATTTTCACTTAC 59.179 43.478 0.00 0.00 0.00 2.34
2192 2318 3.820467 CAGGTCAGGCATTTTCACTTACA 59.180 43.478 0.00 0.00 0.00 2.41
2193 2319 3.821033 AGGTCAGGCATTTTCACTTACAC 59.179 43.478 0.00 0.00 0.00 2.90
2194 2320 3.057526 GGTCAGGCATTTTCACTTACACC 60.058 47.826 0.00 0.00 0.00 4.16
2195 2321 3.568007 GTCAGGCATTTTCACTTACACCA 59.432 43.478 0.00 0.00 0.00 4.17
2196 2322 4.218417 GTCAGGCATTTTCACTTACACCAT 59.782 41.667 0.00 0.00 0.00 3.55
2197 2323 4.218200 TCAGGCATTTTCACTTACACCATG 59.782 41.667 0.00 0.00 0.00 3.66
2198 2324 3.056607 AGGCATTTTCACTTACACCATGC 60.057 43.478 0.00 0.00 35.79 4.06
2199 2325 3.253230 GCATTTTCACTTACACCATGCC 58.747 45.455 0.00 0.00 31.30 4.40
2200 2326 3.056607 GCATTTTCACTTACACCATGCCT 60.057 43.478 0.00 0.00 31.30 4.75
2205 2331 1.732259 CACTTACACCATGCCTCGAAC 59.268 52.381 0.00 0.00 0.00 3.95
2214 2340 1.391485 CATGCCTCGAACTTGAACTCG 59.609 52.381 0.00 0.00 36.39 4.18
2228 2354 2.864028 ACTCGTCGTTCGTGTTGAC 58.136 52.632 0.00 0.00 42.34 3.18
2251 2377 0.302589 CGATCACGTGTCGACCGATA 59.697 55.000 25.89 16.19 41.40 2.92
2252 2378 1.267682 CGATCACGTGTCGACCGATAA 60.268 52.381 25.89 14.31 41.40 1.75
2966 3094 0.676184 AGGATGTGGTGATCGATCGG 59.324 55.000 20.03 0.00 0.00 4.18
2967 3095 0.673985 GGATGTGGTGATCGATCGGA 59.326 55.000 20.03 0.83 0.00 4.55
2969 3097 0.030773 ATGTGGTGATCGATCGGACG 59.969 55.000 20.03 0.00 0.00 4.79
2970 3098 1.299165 GTGGTGATCGATCGGACGG 60.299 63.158 20.03 0.00 0.00 4.79
2971 3099 1.452470 TGGTGATCGATCGGACGGA 60.452 57.895 20.03 0.00 0.00 4.69
2989 3133 3.366440 GGAGACGGTGGTGTATGATAC 57.634 52.381 0.00 0.00 0.00 2.24
3024 3168 5.795132 GCAAATTGCTGGATAGTCTCCGAG 61.795 50.000 11.19 0.00 39.43 4.63
3037 3181 2.092211 GTCTCCGAGTTTTGTACATGCG 59.908 50.000 0.00 0.00 0.00 4.73
3044 3188 4.141855 AGTTTTGTACATGCGTAGTTGC 57.858 40.909 0.00 0.00 0.00 4.17
3056 3200 6.582295 ACATGCGTAGTTGCTAAATTTTCTTG 59.418 34.615 0.00 0.00 35.36 3.02
3057 3201 4.915085 TGCGTAGTTGCTAAATTTTCTTGC 59.085 37.500 0.00 0.00 35.36 4.01
3079 3232 6.577103 TGCTTTCTTGATGACATCTAGTAGG 58.423 40.000 21.31 15.43 34.44 3.18
3081 3234 7.044798 GCTTTCTTGATGACATCTAGTAGGTT 58.955 38.462 21.31 0.00 34.44 3.50
3090 3243 6.864342 TGACATCTAGTAGGTTCTAAAGTGC 58.136 40.000 0.00 0.00 0.00 4.40
3094 3247 7.068470 ACATCTAGTAGGTTCTAAAGTGCTACC 59.932 40.741 0.00 0.00 0.00 3.18
3109 3342 4.174762 GTGCTACCACTACAAGCTAAGAC 58.825 47.826 0.00 0.00 38.93 3.01
3111 3344 4.466370 TGCTACCACTACAAGCTAAGACAT 59.534 41.667 0.00 0.00 37.16 3.06
3114 3347 7.147724 TGCTACCACTACAAGCTAAGACATAAT 60.148 37.037 0.00 0.00 37.16 1.28
3127 3360 9.587772 AGCTAAGACATAATTAAGTAGTGTGTG 57.412 33.333 0.00 0.00 0.00 3.82
3136 3369 9.862371 ATAATTAAGTAGTGTGTGAGTCTGAAG 57.138 33.333 0.00 0.00 0.00 3.02
3139 3372 2.898729 AGTGTGTGAGTCTGAAGGTG 57.101 50.000 0.00 0.00 0.00 4.00
3150 3383 3.191581 AGTCTGAAGGTGTACGACATCAG 59.808 47.826 12.80 12.80 39.61 2.90
3153 3386 2.029380 TGAAGGTGTACGACATCAGTGG 60.029 50.000 0.00 0.00 29.79 4.00
3158 3391 1.202348 TGTACGACATCAGTGGAGCAG 59.798 52.381 0.00 0.00 0.00 4.24
3159 3392 1.472878 GTACGACATCAGTGGAGCAGA 59.527 52.381 0.00 0.00 0.00 4.26
3160 3393 0.529833 ACGACATCAGTGGAGCAGAG 59.470 55.000 0.00 0.00 0.00 3.35
3161 3394 0.179116 CGACATCAGTGGAGCAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
3191 6675 8.106247 AGAACAAGGTAAATAAAATGAAGCGA 57.894 30.769 0.00 0.00 0.00 4.93
3196 6680 9.573133 CAAGGTAAATAAAATGAAGCGAAGAAT 57.427 29.630 0.00 0.00 0.00 2.40
3202 6686 9.906660 AAATAAAATGAAGCGAAGAATTACACA 57.093 25.926 0.00 0.00 0.00 3.72
3204 6688 6.801539 AAATGAAGCGAAGAATTACACAGA 57.198 33.333 0.00 0.00 0.00 3.41
3220 6704 1.021390 CAGAGGTTTAGCAGTGCCCG 61.021 60.000 12.58 0.00 0.00 6.13
3221 6705 1.003718 GAGGTTTAGCAGTGCCCGT 60.004 57.895 12.58 0.00 0.00 5.28
3332 6816 4.866682 GAGTTATTTGCTCCAGTGCTAC 57.133 45.455 0.00 0.00 0.00 3.58
3462 6957 8.891671 TTCGTAGTTATTGTACCAAAAGTTCT 57.108 30.769 0.00 0.00 0.00 3.01
3475 6970 4.276926 CCAAAAGTTCTCAAGACTTCAGGG 59.723 45.833 0.00 0.00 0.00 4.45
3486 6981 2.434185 TTCAGGGTTAGCAGCGCG 60.434 61.111 0.00 0.00 0.00 6.86
3519 7015 1.262166 GCAAGAAGCAACGAACGTGC 61.262 55.000 0.00 7.07 44.79 5.34
3523 7019 2.480426 GAAGCAACGAACGTGCCTCG 62.480 60.000 6.58 6.58 46.00 4.63
3533 7029 1.079819 CGTGCCTCGTGTCTCCAAT 60.080 57.895 0.00 0.00 34.52 3.16
3534 7030 1.078759 CGTGCCTCGTGTCTCCAATC 61.079 60.000 0.00 0.00 34.52 2.67
3535 7031 1.078759 GTGCCTCGTGTCTCCAATCG 61.079 60.000 0.00 0.00 0.00 3.34
3559 7055 0.247655 CCGATCGGTGAAAATGTGCG 60.248 55.000 26.35 0.00 0.00 5.34
3867 7363 9.872721 TTACCGTATATACAATTTGTCTCAACA 57.127 29.630 13.22 0.00 0.00 3.33
3868 7364 8.193250 ACCGTATATACAATTTGTCTCAACAC 57.807 34.615 13.22 0.00 34.35 3.32
3869 7365 7.820386 ACCGTATATACAATTTGTCTCAACACA 59.180 33.333 13.22 0.00 34.35 3.72
3870 7366 8.661257 CCGTATATACAATTTGTCTCAACACAA 58.339 33.333 13.22 0.00 34.35 3.33
3888 7384 9.575783 TCAACACAAATTTAGTAAAGTTTGACC 57.424 29.630 23.01 0.00 35.93 4.02
3889 7385 9.360093 CAACACAAATTTAGTAAAGTTTGACCA 57.640 29.630 23.01 0.00 35.93 4.02
3890 7386 9.930693 AACACAAATTTAGTAAAGTTTGACCAA 57.069 25.926 23.01 0.00 35.93 3.67
3891 7387 9.361315 ACACAAATTTAGTAAAGTTTGACCAAC 57.639 29.630 23.01 0.00 35.93 3.77
3900 7396 8.967664 AGTAAAGTTTGACCAACTACATAACA 57.032 30.769 0.00 0.00 45.77 2.41
3901 7397 9.398538 AGTAAAGTTTGACCAACTACATAACAA 57.601 29.630 0.00 0.00 45.77 2.83
3948 7444 9.788889 AAAATCAGTATCATTAGATGCATCTGA 57.211 29.630 34.48 28.42 39.09 3.27
3949 7445 9.788889 AAATCAGTATCATTAGATGCATCTGAA 57.211 29.630 34.48 24.06 39.09 3.02
3950 7446 9.788889 AATCAGTATCATTAGATGCATCTGAAA 57.211 29.630 34.48 23.65 39.09 2.69
3951 7447 9.961264 ATCAGTATCATTAGATGCATCTGAAAT 57.039 29.630 34.48 24.68 39.09 2.17
3952 7448 9.788889 TCAGTATCATTAGATGCATCTGAAATT 57.211 29.630 34.48 19.93 39.09 1.82
3988 7484 9.137459 ACTATATCACTTTAGTGCTGTAGATGT 57.863 33.333 18.29 4.06 45.25 3.06
3989 7485 9.973450 CTATATCACTTTAGTGCTGTAGATGTT 57.027 33.333 10.25 0.00 45.25 2.71
3993 7489 9.672673 ATCACTTTAGTGCTGTAGATGTTATTT 57.327 29.630 5.00 0.00 45.25 1.40
3994 7490 9.502091 TCACTTTAGTGCTGTAGATGTTATTTT 57.498 29.630 5.00 0.00 45.25 1.82
4009 7505 9.701098 AGATGTTATTTTTATAATACTCGCCGA 57.299 29.630 0.00 0.00 0.00 5.54
4016 7512 9.878599 ATTTTTATAATACTCGCCGAATTCAAG 57.121 29.630 6.22 0.00 0.00 3.02
4017 7513 8.651391 TTTTATAATACTCGCCGAATTCAAGA 57.349 30.769 6.22 0.59 0.00 3.02
4018 7514 8.651391 TTTATAATACTCGCCGAATTCAAGAA 57.349 30.769 6.22 0.00 0.00 2.52
4019 7515 8.651391 TTATAATACTCGCCGAATTCAAGAAA 57.349 30.769 6.22 0.00 0.00 2.52
4020 7516 5.470845 AATACTCGCCGAATTCAAGAAAG 57.529 39.130 6.22 0.00 0.00 2.62
4021 7517 2.767505 ACTCGCCGAATTCAAGAAAGT 58.232 42.857 6.22 0.00 0.00 2.66
4022 7518 2.480419 ACTCGCCGAATTCAAGAAAGTG 59.520 45.455 6.22 0.00 0.00 3.16
4023 7519 2.480419 CTCGCCGAATTCAAGAAAGTGT 59.520 45.455 6.22 0.00 0.00 3.55
4024 7520 2.875933 TCGCCGAATTCAAGAAAGTGTT 59.124 40.909 6.22 0.00 0.00 3.32
4025 7521 3.059188 TCGCCGAATTCAAGAAAGTGTTC 60.059 43.478 6.22 0.00 0.00 3.18
4026 7522 3.303725 CGCCGAATTCAAGAAAGTGTTCA 60.304 43.478 6.22 0.00 36.09 3.18
4027 7523 3.975035 GCCGAATTCAAGAAAGTGTTCAC 59.025 43.478 6.22 0.00 36.09 3.18
4028 7524 4.497340 GCCGAATTCAAGAAAGTGTTCACA 60.497 41.667 6.22 0.00 36.09 3.58
4029 7525 5.577835 CCGAATTCAAGAAAGTGTTCACAA 58.422 37.500 6.22 0.00 36.09 3.33
4030 7526 5.682862 CCGAATTCAAGAAAGTGTTCACAAG 59.317 40.000 6.22 0.00 36.09 3.16
4031 7527 6.258160 CGAATTCAAGAAAGTGTTCACAAGT 58.742 36.000 6.22 0.00 36.09 3.16
4032 7528 6.747280 CGAATTCAAGAAAGTGTTCACAAGTT 59.253 34.615 6.22 0.00 36.09 2.66
4033 7529 7.273381 CGAATTCAAGAAAGTGTTCACAAGTTT 59.727 33.333 6.22 0.00 36.09 2.66
4034 7530 8.466086 AATTCAAGAAAGTGTTCACAAGTTTC 57.534 30.769 5.74 6.82 36.09 2.78
4035 7531 6.567687 TCAAGAAAGTGTTCACAAGTTTCA 57.432 33.333 14.26 0.00 35.30 2.69
4036 7532 6.976088 TCAAGAAAGTGTTCACAAGTTTCAA 58.024 32.000 14.26 2.61 35.30 2.69
4037 7533 7.429633 TCAAGAAAGTGTTCACAAGTTTCAAA 58.570 30.769 14.26 2.37 35.30 2.69
4038 7534 7.923344 TCAAGAAAGTGTTCACAAGTTTCAAAA 59.077 29.630 14.26 2.13 35.30 2.44
4039 7535 7.873739 AGAAAGTGTTCACAAGTTTCAAAAG 57.126 32.000 14.26 0.00 35.30 2.27
4040 7536 6.366061 AGAAAGTGTTCACAAGTTTCAAAAGC 59.634 34.615 14.26 0.00 35.30 3.51
4041 7537 5.132897 AGTGTTCACAAGTTTCAAAAGCA 57.867 34.783 5.74 0.00 0.00 3.91
4042 7538 5.723295 AGTGTTCACAAGTTTCAAAAGCAT 58.277 33.333 5.74 0.00 0.00 3.79
4043 7539 5.577945 AGTGTTCACAAGTTTCAAAAGCATG 59.422 36.000 5.74 0.00 0.00 4.06
4044 7540 5.576384 GTGTTCACAAGTTTCAAAAGCATGA 59.424 36.000 0.00 0.00 0.00 3.07
4045 7541 6.256321 GTGTTCACAAGTTTCAAAAGCATGAT 59.744 34.615 0.00 0.00 0.00 2.45
4046 7542 6.476380 TGTTCACAAGTTTCAAAAGCATGATC 59.524 34.615 0.00 0.00 0.00 2.92
4047 7543 6.146601 TCACAAGTTTCAAAAGCATGATCA 57.853 33.333 0.00 0.00 0.00 2.92
4048 7544 6.751157 TCACAAGTTTCAAAAGCATGATCAT 58.249 32.000 1.18 1.18 0.00 2.45
4049 7545 6.643360 TCACAAGTTTCAAAAGCATGATCATG 59.357 34.615 28.04 28.04 41.60 3.07
4050 7546 6.643360 CACAAGTTTCAAAAGCATGATCATGA 59.357 34.615 34.65 14.47 41.20 3.07
4051 7547 7.330946 CACAAGTTTCAAAAGCATGATCATGAT 59.669 33.333 34.65 28.14 41.20 2.45
4053 7549 9.361315 CAAGTTTCAAAAGCATGATCATGATTA 57.639 29.630 32.87 18.91 45.49 1.75
4054 7550 8.922058 AGTTTCAAAAGCATGATCATGATTAC 57.078 30.769 32.87 26.34 45.49 1.89
4055 7551 8.525316 AGTTTCAAAAGCATGATCATGATTACA 58.475 29.630 32.87 19.61 45.49 2.41
4056 7552 9.309516 GTTTCAAAAGCATGATCATGATTACAT 57.690 29.630 32.87 21.47 45.49 2.29
4067 7563 9.701098 ATGATCATGATTACATAAAATGTTGGC 57.299 29.630 10.14 0.00 41.63 4.52
4068 7564 8.693625 TGATCATGATTACATAAAATGTTGGCA 58.306 29.630 10.14 0.00 41.63 4.92
4069 7565 9.531942 GATCATGATTACATAAAATGTTGGCAA 57.468 29.630 10.14 0.00 41.63 4.52
4070 7566 9.887629 ATCATGATTACATAAAATGTTGGCAAA 57.112 25.926 0.00 0.00 41.63 3.68
4071 7567 9.716531 TCATGATTACATAAAATGTTGGCAAAA 57.283 25.926 0.00 0.00 41.63 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 135 0.177141 GAAACGGTGGGGATCGATCA 59.823 55.000 25.93 4.39 0.00 2.92
100 138 0.107897 CATGAAACGGTGGGGATCGA 60.108 55.000 0.00 0.00 0.00 3.59
388 462 1.153489 CTCGGCACCACCAGATCAG 60.153 63.158 0.00 0.00 39.03 2.90
414 488 4.988598 AGCCCAACTGACGCGTGG 62.989 66.667 20.70 12.29 0.00 4.94
415 489 3.414700 GAGCCCAACTGACGCGTG 61.415 66.667 20.70 5.54 0.00 5.34
489 563 0.241481 GGCGAGCGGATTACTCCTAG 59.759 60.000 0.00 0.00 39.65 3.02
671 758 6.371548 CACGAGATTAAAGGAGGAAATCAACA 59.628 38.462 0.00 0.00 33.06 3.33
901 1000 2.702270 AAAGGAGCTTTTGGGGACAT 57.298 45.000 0.00 0.00 42.32 3.06
932 1031 1.216710 GGCTCCTCCGACTTGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
1005 1104 6.989169 CCTCGGTAAGATGAAGAATCTCAAAT 59.011 38.462 0.00 0.00 45.37 2.32
1007 1106 5.422331 ACCTCGGTAAGATGAAGAATCTCAA 59.578 40.000 0.00 0.00 45.37 3.02
1035 1134 1.344942 AAGAAGCTAGCGCGTCAACG 61.345 55.000 9.55 0.00 45.44 4.10
1036 1135 0.367210 GAAGAAGCTAGCGCGTCAAC 59.633 55.000 9.55 3.52 45.44 3.18
1038 1137 1.153823 GGAAGAAGCTAGCGCGTCA 60.154 57.895 20.94 0.00 45.44 4.35
1039 1138 0.868177 GAGGAAGAAGCTAGCGCGTC 60.868 60.000 9.55 12.76 43.71 5.19
1040 1139 1.139947 GAGGAAGAAGCTAGCGCGT 59.860 57.895 9.55 3.82 42.32 6.01
1042 1141 2.234335 GCGAGGAAGAAGCTAGCGC 61.234 63.158 9.55 0.00 36.12 5.92
1043 1142 1.941734 CGCGAGGAAGAAGCTAGCG 60.942 63.158 9.55 0.00 40.14 4.26
1044 1143 0.458716 AACGCGAGGAAGAAGCTAGC 60.459 55.000 15.93 6.62 0.00 3.42
1058 1169 4.099585 CGGACACGAACGAACGCG 62.100 66.667 3.53 3.53 44.60 6.01
1062 1173 1.371267 CTCTGCGGACACGAACGAA 60.371 57.895 0.14 0.00 44.60 3.85
1396 1507 3.686726 GGAGATATGAATCAATGGGACGC 59.313 47.826 0.00 0.00 34.28 5.19
1398 1509 5.583854 CGATGGAGATATGAATCAATGGGAC 59.416 44.000 0.00 0.00 34.28 4.46
1403 1514 6.925211 ACGTACGATGGAGATATGAATCAAT 58.075 36.000 24.41 0.00 34.28 2.57
1461 1579 2.947118 AAACTCAGACACGCACGCGA 62.947 55.000 19.66 0.00 42.83 5.87
1513 1631 1.267806 ACTGTTCAAGCCATTTCAGCG 59.732 47.619 0.00 0.00 34.64 5.18
1611 1729 2.159627 GTCTGGAATAAACAGTGTGCGG 59.840 50.000 0.00 0.00 37.25 5.69
1664 1782 0.172803 AGCGACGTTTAGCCCACTAG 59.827 55.000 7.77 0.00 0.00 2.57
1720 1838 6.572519 AGTTAACAACTAACAACTGTCCGTA 58.427 36.000 8.61 0.00 42.18 4.02
1722 1840 5.751990 AGAGTTAACAACTAACAACTGTCCG 59.248 40.000 8.61 0.00 43.03 4.79
1732 1850 7.070821 AGGAACAGAGGAAGAGTTAACAACTAA 59.929 37.037 8.61 0.00 43.03 2.24
1755 1876 2.508436 TGCCGACTTTGCACAGGA 59.492 55.556 4.63 0.00 32.85 3.86
1816 1937 0.739112 GAGAAGTCGCTGCTGAAGGG 60.739 60.000 0.00 0.00 40.19 3.95
1913 2039 5.305585 CCAAGGACTAAACAACTCAGCTTA 58.694 41.667 0.00 0.00 0.00 3.09
1924 2050 1.204704 GCATTGGGCCAAGGACTAAAC 59.795 52.381 33.09 11.41 36.11 2.01
2019 2145 1.476085 AGCTTGACGAGTGATCTGAGG 59.524 52.381 0.00 0.00 0.00 3.86
2043 2169 2.442272 TAGCCTCGGACCAGAGCC 60.442 66.667 7.57 0.00 36.95 4.70
2180 2306 3.440173 CGAGGCATGGTGTAAGTGAAAAT 59.560 43.478 0.00 0.00 0.00 1.82
2181 2307 2.811431 CGAGGCATGGTGTAAGTGAAAA 59.189 45.455 0.00 0.00 0.00 2.29
2182 2308 2.037902 TCGAGGCATGGTGTAAGTGAAA 59.962 45.455 0.00 0.00 0.00 2.69
2183 2309 1.621317 TCGAGGCATGGTGTAAGTGAA 59.379 47.619 0.00 0.00 0.00 3.18
2184 2310 1.262417 TCGAGGCATGGTGTAAGTGA 58.738 50.000 0.00 0.00 0.00 3.41
2185 2311 1.732259 GTTCGAGGCATGGTGTAAGTG 59.268 52.381 0.00 0.00 0.00 3.16
2186 2312 1.623811 AGTTCGAGGCATGGTGTAAGT 59.376 47.619 0.00 0.00 0.00 2.24
2187 2313 2.386661 AGTTCGAGGCATGGTGTAAG 57.613 50.000 0.00 0.00 0.00 2.34
2188 2314 2.037902 TCAAGTTCGAGGCATGGTGTAA 59.962 45.455 0.00 0.00 0.00 2.41
2189 2315 1.621317 TCAAGTTCGAGGCATGGTGTA 59.379 47.619 0.00 0.00 0.00 2.90
2190 2316 0.396435 TCAAGTTCGAGGCATGGTGT 59.604 50.000 0.00 0.00 0.00 4.16
2191 2317 1.197721 GTTCAAGTTCGAGGCATGGTG 59.802 52.381 0.00 0.00 0.00 4.17
2192 2318 1.072331 AGTTCAAGTTCGAGGCATGGT 59.928 47.619 0.00 0.00 0.00 3.55
2193 2319 1.734465 GAGTTCAAGTTCGAGGCATGG 59.266 52.381 0.00 0.00 0.00 3.66
2194 2320 1.391485 CGAGTTCAAGTTCGAGGCATG 59.609 52.381 0.00 0.00 39.06 4.06
2195 2321 1.000955 ACGAGTTCAAGTTCGAGGCAT 59.999 47.619 0.51 0.00 39.93 4.40
2196 2322 0.387929 ACGAGTTCAAGTTCGAGGCA 59.612 50.000 0.51 0.00 39.93 4.75
2197 2323 1.061485 GACGAGTTCAAGTTCGAGGC 58.939 55.000 0.51 0.00 39.93 4.70
2198 2324 1.328439 CGACGAGTTCAAGTTCGAGG 58.672 55.000 0.51 0.00 39.93 4.63
2199 2325 2.033793 ACGACGAGTTCAAGTTCGAG 57.966 50.000 0.00 0.00 39.93 4.04
2200 2326 2.480224 AACGACGAGTTCAAGTTCGA 57.520 45.000 0.00 0.00 39.16 3.71
2214 2340 3.792719 GTTGGTCAACACGAACGAC 57.207 52.632 8.77 0.00 38.57 4.34
2240 2366 6.203145 TCAAACTCAAAATTTATCGGTCGACA 59.797 34.615 18.91 0.00 0.00 4.35
2247 2373 8.886080 CGAGCATATCAAACTCAAAATTTATCG 58.114 33.333 0.00 0.00 0.00 2.92
2251 2377 6.529125 CAGCGAGCATATCAAACTCAAAATTT 59.471 34.615 0.00 0.00 0.00 1.82
2252 2378 6.032094 CAGCGAGCATATCAAACTCAAAATT 58.968 36.000 0.00 0.00 0.00 1.82
2637 2765 1.141881 CTTGGCAGGCGAGTCGTAT 59.858 57.895 15.08 0.00 0.00 3.06
2704 2832 4.201679 CATGTACCGCGGGCTCGA 62.202 66.667 31.76 8.68 39.00 4.04
2917 3045 0.108992 TAATCTCTTGCCGCGTCGTT 60.109 50.000 4.92 0.00 0.00 3.85
2962 3090 3.138798 CCACCGTCTCCGTCCGAT 61.139 66.667 0.00 0.00 0.00 4.18
2963 3091 4.648626 ACCACCGTCTCCGTCCGA 62.649 66.667 0.00 0.00 0.00 4.55
2964 3092 4.415332 CACCACCGTCTCCGTCCG 62.415 72.222 0.00 0.00 0.00 4.79
2966 3094 0.179145 CATACACCACCGTCTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
2967 3095 0.609957 TCATACACCACCGTCTCCGT 60.610 55.000 0.00 0.00 0.00 4.69
2969 3097 2.957006 AGTATCATACACCACCGTCTCC 59.043 50.000 0.00 0.00 0.00 3.71
2970 3098 4.023365 GGTAGTATCATACACCACCGTCTC 60.023 50.000 10.09 0.00 33.17 3.36
2971 3099 3.887716 GGTAGTATCATACACCACCGTCT 59.112 47.826 10.09 0.00 33.17 4.18
2987 3131 3.938963 GCAATTTGCAGCTACTGGTAGTA 59.061 43.478 16.35 0.00 44.26 1.82
2988 3132 2.749621 GCAATTTGCAGCTACTGGTAGT 59.250 45.455 16.35 0.00 44.26 2.73
2989 3133 3.411415 GCAATTTGCAGCTACTGGTAG 57.589 47.619 16.35 3.62 44.26 3.18
3024 3168 4.141855 AGCAACTACGCATGTACAAAAC 57.858 40.909 0.00 0.00 0.00 2.43
3037 3181 8.803201 AGAAAGCAAGAAAATTTAGCAACTAC 57.197 30.769 0.00 0.00 0.00 2.73
3044 3188 9.467258 TGTCATCAAGAAAGCAAGAAAATTTAG 57.533 29.630 0.00 0.00 0.00 1.85
3056 3200 6.578023 ACCTACTAGATGTCATCAAGAAAGC 58.422 40.000 15.20 0.00 0.00 3.51
3057 3201 8.474025 AGAACCTACTAGATGTCATCAAGAAAG 58.526 37.037 15.20 6.60 0.00 2.62
3079 3232 5.120363 GCTTGTAGTGGTAGCACTTTAGAAC 59.880 44.000 30.71 21.98 36.68 3.01
3081 3234 4.527038 AGCTTGTAGTGGTAGCACTTTAGA 59.473 41.667 30.71 11.83 37.37 2.10
3102 3255 9.582431 TCACACACTACTTAATTATGTCTTAGC 57.418 33.333 7.24 0.00 0.00 3.09
3105 3338 9.640963 GACTCACACACTACTTAATTATGTCTT 57.359 33.333 7.24 0.00 0.00 3.01
3109 3342 9.639601 TTCAGACTCACACACTACTTAATTATG 57.360 33.333 0.00 0.00 0.00 1.90
3111 3344 8.304596 CCTTCAGACTCACACACTACTTAATTA 58.695 37.037 0.00 0.00 0.00 1.40
3114 3347 5.597182 ACCTTCAGACTCACACACTACTTAA 59.403 40.000 0.00 0.00 0.00 1.85
3126 3359 2.578786 TGTCGTACACCTTCAGACTCA 58.421 47.619 0.00 0.00 33.40 3.41
3127 3360 3.190744 TGATGTCGTACACCTTCAGACTC 59.809 47.826 0.00 0.00 33.40 3.36
3136 3369 1.736032 GCTCCACTGATGTCGTACACC 60.736 57.143 0.00 0.00 0.00 4.16
3139 3372 1.472878 TCTGCTCCACTGATGTCGTAC 59.527 52.381 0.00 0.00 0.00 3.67
3150 3383 2.284190 GTTCTATTGCCTCTGCTCCAC 58.716 52.381 0.00 0.00 38.71 4.02
3153 3386 2.941720 CCTTGTTCTATTGCCTCTGCTC 59.058 50.000 0.00 0.00 38.71 4.26
3191 6675 6.428159 CACTGCTAAACCTCTGTGTAATTCTT 59.572 38.462 0.00 0.00 0.00 2.52
3196 6680 3.399330 GCACTGCTAAACCTCTGTGTAA 58.601 45.455 0.00 0.00 35.47 2.41
3202 6686 1.296715 CGGGCACTGCTAAACCTCT 59.703 57.895 0.00 0.00 0.00 3.69
3204 6688 0.909623 ATACGGGCACTGCTAAACCT 59.090 50.000 0.00 0.00 39.14 3.50
3220 6704 4.494484 GGGCAGGACAAAAACATCAATAC 58.506 43.478 0.00 0.00 0.00 1.89
3221 6705 3.513515 GGGGCAGGACAAAAACATCAATA 59.486 43.478 0.00 0.00 0.00 1.90
3332 6816 2.200067 GTCAGATCACTTCAGCATCGG 58.800 52.381 0.00 0.00 0.00 4.18
3369 6861 3.009140 CGCTGTCGGATCATGTGC 58.991 61.111 0.00 0.00 0.00 4.57
3397 6889 0.772926 CATCGCGTACGCTTCTCATC 59.227 55.000 34.69 6.93 39.84 2.92
3400 6892 0.772926 CATCATCGCGTACGCTTCTC 59.227 55.000 34.69 9.17 39.84 2.87
3462 6957 2.289694 GCTGCTAACCCTGAAGTCTTGA 60.290 50.000 0.00 0.00 0.00 3.02
3475 6970 4.196826 CAGTCGCGCGCTGCTAAC 62.197 66.667 30.57 21.34 43.27 2.34
3486 6981 1.448985 TCTTGCCATTAACCAGTCGC 58.551 50.000 0.00 0.00 0.00 5.19
3487 6982 2.159517 GCTTCTTGCCATTAACCAGTCG 60.160 50.000 0.00 0.00 35.15 4.18
3519 7015 1.067846 TGTTCGATTGGAGACACGAGG 60.068 52.381 0.00 0.00 39.56 4.63
3523 7019 1.068474 CGGTGTTCGATTGGAGACAC 58.932 55.000 7.17 7.17 40.42 3.67
3841 7337 9.872721 TGTTGAGACAAATTGTATATACGGTAA 57.127 29.630 8.33 0.00 31.49 2.85
3842 7338 9.304731 GTGTTGAGACAAATTGTATATACGGTA 57.695 33.333 8.33 0.00 37.57 4.02
3843 7339 7.820386 TGTGTTGAGACAAATTGTATATACGGT 59.180 33.333 8.33 1.82 37.57 4.83
3844 7340 8.192068 TGTGTTGAGACAAATTGTATATACGG 57.808 34.615 8.33 0.00 37.57 4.02
3862 7358 9.575783 GGTCAAACTTTACTAAATTTGTGTTGA 57.424 29.630 0.00 0.78 34.40 3.18
3863 7359 9.360093 TGGTCAAACTTTACTAAATTTGTGTTG 57.640 29.630 0.00 0.00 34.40 3.33
3864 7360 9.930693 TTGGTCAAACTTTACTAAATTTGTGTT 57.069 25.926 0.00 0.00 34.40 3.32
3865 7361 9.361315 GTTGGTCAAACTTTACTAAATTTGTGT 57.639 29.630 0.00 2.60 35.75 3.72
3922 7418 9.788889 TCAGATGCATCTAATGATACTGATTTT 57.211 29.630 28.27 0.00 34.85 1.82
3923 7419 9.788889 TTCAGATGCATCTAATGATACTGATTT 57.211 29.630 28.27 0.00 34.85 2.17
3924 7420 9.788889 TTTCAGATGCATCTAATGATACTGATT 57.211 29.630 28.27 0.00 34.85 2.57
3925 7421 9.961264 ATTTCAGATGCATCTAATGATACTGAT 57.039 29.630 28.27 9.40 34.85 2.90
3926 7422 9.788889 AATTTCAGATGCATCTAATGATACTGA 57.211 29.630 28.27 15.87 34.85 3.41
3983 7479 9.701098 TCGGCGAGTATTATAAAAATAACATCT 57.299 29.630 4.99 0.00 0.00 2.90
3990 7486 9.878599 CTTGAATTCGGCGAGTATTATAAAAAT 57.121 29.630 10.46 0.00 0.00 1.82
3991 7487 9.100554 TCTTGAATTCGGCGAGTATTATAAAAA 57.899 29.630 10.46 0.00 0.00 1.94
3992 7488 8.651391 TCTTGAATTCGGCGAGTATTATAAAA 57.349 30.769 10.46 1.31 0.00 1.52
3993 7489 8.651391 TTCTTGAATTCGGCGAGTATTATAAA 57.349 30.769 10.46 3.56 0.00 1.40
3994 7490 8.651391 TTTCTTGAATTCGGCGAGTATTATAA 57.349 30.769 10.46 6.52 0.00 0.98
3995 7491 7.924412 ACTTTCTTGAATTCGGCGAGTATTATA 59.076 33.333 10.46 0.00 0.00 0.98
3996 7492 6.761714 ACTTTCTTGAATTCGGCGAGTATTAT 59.238 34.615 10.46 0.00 0.00 1.28
3997 7493 6.035650 CACTTTCTTGAATTCGGCGAGTATTA 59.964 38.462 10.46 0.00 0.00 0.98
3998 7494 4.935808 ACTTTCTTGAATTCGGCGAGTATT 59.064 37.500 10.46 8.24 0.00 1.89
3999 7495 4.330074 CACTTTCTTGAATTCGGCGAGTAT 59.670 41.667 10.46 0.00 0.00 2.12
4000 7496 3.678072 CACTTTCTTGAATTCGGCGAGTA 59.322 43.478 10.46 0.00 0.00 2.59
4001 7497 2.480419 CACTTTCTTGAATTCGGCGAGT 59.520 45.455 10.46 3.76 0.00 4.18
4002 7498 2.480419 ACACTTTCTTGAATTCGGCGAG 59.520 45.455 10.46 0.00 0.00 5.03
4003 7499 2.489971 ACACTTTCTTGAATTCGGCGA 58.510 42.857 4.99 4.99 0.00 5.54
4004 7500 2.969443 ACACTTTCTTGAATTCGGCG 57.031 45.000 0.00 0.00 0.00 6.46
4005 7501 3.975035 GTGAACACTTTCTTGAATTCGGC 59.025 43.478 0.04 0.00 32.36 5.54
4006 7502 5.168526 TGTGAACACTTTCTTGAATTCGG 57.831 39.130 0.04 0.00 32.36 4.30
4007 7503 6.258160 ACTTGTGAACACTTTCTTGAATTCG 58.742 36.000 0.04 0.00 32.36 3.34
4008 7504 8.466086 AAACTTGTGAACACTTTCTTGAATTC 57.534 30.769 0.00 0.00 32.36 2.17
4009 7505 8.087750 TGAAACTTGTGAACACTTTCTTGAATT 58.912 29.630 14.45 0.00 32.36 2.17
4010 7506 7.601856 TGAAACTTGTGAACACTTTCTTGAAT 58.398 30.769 14.45 0.00 32.36 2.57
4011 7507 6.976088 TGAAACTTGTGAACACTTTCTTGAA 58.024 32.000 14.45 0.00 32.36 2.69
4012 7508 6.567687 TGAAACTTGTGAACACTTTCTTGA 57.432 33.333 14.45 0.00 32.36 3.02
4013 7509 7.636259 TTTGAAACTTGTGAACACTTTCTTG 57.364 32.000 14.45 0.00 32.36 3.02
4014 7510 7.095649 GCTTTTGAAACTTGTGAACACTTTCTT 60.096 33.333 14.45 2.91 32.36 2.52
4015 7511 6.366061 GCTTTTGAAACTTGTGAACACTTTCT 59.634 34.615 14.45 0.00 32.36 2.52
4016 7512 6.145371 TGCTTTTGAAACTTGTGAACACTTTC 59.855 34.615 6.51 8.34 0.00 2.62
4017 7513 5.988561 TGCTTTTGAAACTTGTGAACACTTT 59.011 32.000 6.51 0.00 0.00 2.66
4018 7514 5.537188 TGCTTTTGAAACTTGTGAACACTT 58.463 33.333 6.51 0.00 0.00 3.16
4019 7515 5.132897 TGCTTTTGAAACTTGTGAACACT 57.867 34.783 6.51 0.00 0.00 3.55
4020 7516 5.576384 TCATGCTTTTGAAACTTGTGAACAC 59.424 36.000 0.00 0.00 0.00 3.32
4021 7517 5.718146 TCATGCTTTTGAAACTTGTGAACA 58.282 33.333 0.00 0.00 0.00 3.18
4022 7518 6.476380 TGATCATGCTTTTGAAACTTGTGAAC 59.524 34.615 0.00 0.00 0.00 3.18
4023 7519 6.571605 TGATCATGCTTTTGAAACTTGTGAA 58.428 32.000 0.00 0.00 0.00 3.18
4024 7520 6.146601 TGATCATGCTTTTGAAACTTGTGA 57.853 33.333 0.00 0.00 0.00 3.58
4025 7521 6.643360 TCATGATCATGCTTTTGAAACTTGTG 59.357 34.615 27.68 2.96 38.65 3.33
4026 7522 6.751157 TCATGATCATGCTTTTGAAACTTGT 58.249 32.000 27.68 0.00 38.65 3.16
4027 7523 7.827819 ATCATGATCATGCTTTTGAAACTTG 57.172 32.000 27.68 3.98 38.65 3.16
4028 7524 9.362539 GTAATCATGATCATGCTTTTGAAACTT 57.637 29.630 27.68 7.38 38.65 2.66
4029 7525 8.525316 TGTAATCATGATCATGCTTTTGAAACT 58.475 29.630 27.68 6.15 38.65 2.66
4030 7526 8.692110 TGTAATCATGATCATGCTTTTGAAAC 57.308 30.769 27.68 18.83 38.65 2.78
4041 7537 9.701098 GCCAACATTTTATGTAATCATGATCAT 57.299 29.630 9.06 11.44 44.07 2.45
4042 7538 8.693625 TGCCAACATTTTATGTAATCATGATCA 58.306 29.630 9.06 3.98 44.07 2.92
4043 7539 9.531942 TTGCCAACATTTTATGTAATCATGATC 57.468 29.630 9.06 0.00 44.07 2.92
4044 7540 9.887629 TTTGCCAACATTTTATGTAATCATGAT 57.112 25.926 1.18 1.18 44.07 2.45
4045 7541 9.716531 TTTTGCCAACATTTTATGTAATCATGA 57.283 25.926 0.00 0.00 44.07 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.