Multiple sequence alignment - TraesCS3B01G309500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G309500 chr3B 100.000 6398 0 0 3072 9469 498063552 498057155 0.000000e+00 11815.0
1 TraesCS3B01G309500 chr3B 100.000 2834 0 0 1 2834 498066623 498063790 0.000000e+00 5234.0
2 TraesCS3B01G309500 chr3B 90.400 625 58 2 6266 6889 672373130 672373753 0.000000e+00 821.0
3 TraesCS3B01G309500 chr3B 88.801 634 68 3 6261 6892 739944480 739943848 0.000000e+00 774.0
4 TraesCS3B01G309500 chr3B 91.837 392 25 5 4803 5188 420878571 420878961 3.010000e-149 540.0
5 TraesCS3B01G309500 chr3B 77.434 904 166 18 1135 2004 499450792 499451691 1.100000e-138 505.0
6 TraesCS3B01G309500 chr3B 90.212 378 28 7 4803 5173 727118412 727118037 1.430000e-132 484.0
7 TraesCS3B01G309500 chr3B 83.259 448 45 12 214 634 354033725 354034169 1.490000e-102 385.0
8 TraesCS3B01G309500 chr3B 84.737 190 24 4 203 389 186874359 186874172 1.620000e-42 185.0
9 TraesCS3B01G309500 chr3D 95.636 1856 63 4 7616 9469 382104139 382102300 0.000000e+00 2963.0
10 TraesCS3B01G309500 chr3D 92.192 1793 73 21 642 2386 382505911 382504138 0.000000e+00 2473.0
11 TraesCS3B01G309500 chr3D 94.916 1495 51 6 826 2301 382118333 382116845 0.000000e+00 2316.0
12 TraesCS3B01G309500 chr3D 90.295 1185 74 15 8041 9221 382499000 382497853 0.000000e+00 1513.0
13 TraesCS3B01G309500 chr3D 92.787 1012 53 11 3692 4692 382114193 382113191 0.000000e+00 1447.0
14 TraesCS3B01G309500 chr3D 89.488 761 54 16 3961 4712 382502715 382501972 0.000000e+00 939.0
15 TraesCS3B01G309500 chr3D 90.538 613 41 8 6932 7543 382104830 382104234 0.000000e+00 795.0
16 TraesCS3B01G309500 chr3D 92.494 413 29 1 2388 2800 382504054 382503644 2.950000e-164 590.0
17 TraesCS3B01G309500 chr3D 88.259 494 32 11 7614 8091 382499483 382499000 1.380000e-157 568.0
18 TraesCS3B01G309500 chr3D 95.930 344 8 1 2491 2834 382116369 382116032 3.860000e-153 553.0
19 TraesCS3B01G309500 chr3D 92.541 362 16 5 3301 3662 382115610 382115260 8.480000e-140 508.0
20 TraesCS3B01G309500 chr3D 76.948 911 169 18 1131 2004 384247746 384248652 1.850000e-131 481.0
21 TraesCS3B01G309500 chr3D 86.728 437 36 10 3072 3486 382503651 382503215 5.180000e-127 466.0
22 TraesCS3B01G309500 chr3D 96.943 229 7 0 3074 3302 382116037 382115809 1.490000e-102 385.0
23 TraesCS3B01G309500 chr3D 82.589 448 50 10 214 634 236666911 236667357 4.180000e-98 370.0
24 TraesCS3B01G309500 chr3D 80.415 434 43 14 228 634 393424651 393425069 9.300000e-75 292.0
25 TraesCS3B01G309500 chr3D 81.530 379 39 14 284 633 589774562 589774186 5.600000e-72 283.0
26 TraesCS3B01G309500 chr3D 91.358 162 7 3 9224 9385 382496570 382496416 2.070000e-51 215.0
27 TraesCS3B01G309500 chr3D 86.598 194 13 4 7357 7538 382499782 382499590 1.610000e-47 202.0
28 TraesCS3B01G309500 chr3D 97.468 79 2 0 9371 9449 382495239 382495161 1.660000e-27 135.0
29 TraesCS3B01G309500 chr3D 88.393 112 12 1 4713 4823 382501941 382501830 5.970000e-27 134.0
30 TraesCS3B01G309500 chr3D 92.063 63 5 0 4750 4812 382105259 382105197 1.310000e-13 89.8
31 TraesCS3B01G309500 chr3D 96.226 53 2 0 7567 7619 382104248 382104196 4.710000e-13 87.9
32 TraesCS3B01G309500 chr3A 92.797 1777 88 19 3072 4812 505236766 505234994 0.000000e+00 2536.0
33 TraesCS3B01G309500 chr3A 94.780 1571 61 10 656 2206 505238995 505237426 0.000000e+00 2427.0
34 TraesCS3B01G309500 chr3A 94.559 1507 56 3 7616 9122 505232968 505231488 0.000000e+00 2305.0
35 TraesCS3B01G309500 chr3A 98.387 434 7 0 2401 2834 505237196 505236763 0.000000e+00 763.0
36 TraesCS3B01G309500 chr3A 89.199 537 33 6 7018 7543 505233588 505233066 0.000000e+00 647.0
37 TraesCS3B01G309500 chr3A 95.442 351 12 2 9120 9469 505231407 505231060 2.990000e-154 556.0
38 TraesCS3B01G309500 chr3A 77.313 908 168 19 1131 2004 506800378 506801281 1.420000e-137 501.0
39 TraesCS3B01G309500 chr3A 81.879 447 47 14 217 634 323391222 323390781 7.040000e-91 346.0
40 TraesCS3B01G309500 chr3A 92.701 137 8 2 6889 7025 505235005 505234871 7.500000e-46 196.0
41 TraesCS3B01G309500 chr6B 91.976 1483 89 14 4803 6268 45571404 45569935 0.000000e+00 2052.0
42 TraesCS3B01G309500 chr6B 91.577 1484 96 12 4803 6268 572386608 572385136 0.000000e+00 2021.0
43 TraesCS3B01G309500 chr6B 91.279 688 41 11 4803 5475 107818388 107819071 0.000000e+00 920.0
44 TraesCS3B01G309500 chr6B 91.759 631 48 4 6261 6889 693810822 693811450 0.000000e+00 874.0
45 TraesCS3B01G309500 chr6B 91.352 636 47 6 6265 6897 45569825 45569195 0.000000e+00 863.0
46 TraesCS3B01G309500 chr6B 89.600 625 62 3 6269 6891 658298590 658297967 0.000000e+00 791.0
47 TraesCS3B01G309500 chr6B 88.818 626 64 6 6269 6891 423413119 423412497 0.000000e+00 763.0
48 TraesCS3B01G309500 chr6B 82.472 445 48 15 217 633 212168104 212167662 6.990000e-96 363.0
49 TraesCS3B01G309500 chr5B 91.190 1487 102 12 4801 6268 315456686 315458162 0.000000e+00 1993.0
50 TraesCS3B01G309500 chr5B 89.630 1485 110 15 4801 6268 458739821 458738364 0.000000e+00 1849.0
51 TraesCS3B01G309500 chr5B 90.433 669 49 8 4801 5457 442777281 442776616 0.000000e+00 867.0
52 TraesCS3B01G309500 chr5B 81.136 440 54 11 225 636 6678238 6677800 9.170000e-85 326.0
53 TraesCS3B01G309500 chr4B 90.247 1497 109 16 4796 6268 585742072 585740589 0.000000e+00 1921.0
54 TraesCS3B01G309500 chr4B 90.013 1482 98 16 4798 6268 522288789 522290231 0.000000e+00 1871.0
55 TraesCS3B01G309500 chr4B 92.076 631 45 5 6265 6893 522290341 522290968 0.000000e+00 883.0
56 TraesCS3B01G309500 chr4B 81.264 443 57 11 217 634 273428097 273428538 1.520000e-87 335.0
57 TraesCS3B01G309500 chr4B 81.166 446 56 12 217 635 85798355 85798799 5.480000e-87 333.0
58 TraesCS3B01G309500 chr4B 80.786 458 56 11 214 643 135874073 135874526 7.090000e-86 329.0
59 TraesCS3B01G309500 chr4B 80.652 460 58 12 213 645 473587982 473587527 2.550000e-85 327.0
60 TraesCS3B01G309500 chr2D 87.701 1496 141 29 4803 6266 624845581 624844097 0.000000e+00 1703.0
61 TraesCS3B01G309500 chr2D 87.316 1498 143 30 4801 6266 586562626 586564108 0.000000e+00 1670.0
62 TraesCS3B01G309500 chr2D 87.116 1498 141 32 4801 6266 189288873 189290350 0.000000e+00 1650.0
63 TraesCS3B01G309500 chr2D 82.080 452 49 15 211 633 488464924 488464476 3.250000e-94 357.0
64 TraesCS3B01G309500 chr2D 81.838 457 49 16 217 644 357538091 357537640 4.210000e-93 353.0
65 TraesCS3B01G309500 chr4D 87.650 1498 140 31 4799 6266 340294258 340295740 0.000000e+00 1700.0
66 TraesCS3B01G309500 chr4D 86.604 1493 159 30 4801 6266 503693359 503691881 0.000000e+00 1611.0
67 TraesCS3B01G309500 chr4D 86.430 1496 155 33 4803 6263 261258400 261259882 0.000000e+00 1594.0
68 TraesCS3B01G309500 chr4D 81.655 447 51 13 217 633 102158622 102159067 9.110000e-90 342.0
69 TraesCS3B01G309500 chr4D 81.556 450 52 15 213 633 398728370 398727923 9.110000e-90 342.0
70 TraesCS3B01G309500 chr4D 80.761 447 56 12 210 627 468585268 468585713 1.190000e-83 322.0
71 TraesCS3B01G309500 chr7B 86.676 1501 148 32 4801 6266 210792434 210790951 0.000000e+00 1616.0
72 TraesCS3B01G309500 chr7B 89.524 630 64 2 6265 6892 97967673 97967044 0.000000e+00 797.0
73 TraesCS3B01G309500 chr7B 81.614 446 52 11 217 634 615182594 615182151 9.110000e-90 342.0
74 TraesCS3B01G309500 chr2A 86.292 1459 155 36 4836 6263 47764845 47766289 0.000000e+00 1544.0
75 TraesCS3B01G309500 chr2A 84.706 425 56 5 217 634 225585201 225585623 5.290000e-112 416.0
76 TraesCS3B01G309500 chr1B 89.490 628 63 2 6265 6891 467620752 467620127 0.000000e+00 791.0
77 TraesCS3B01G309500 chr6D 82.965 452 48 9 217 640 449666097 449665647 1.930000e-101 381.0
78 TraesCS3B01G309500 chr6D 82.589 448 46 13 217 633 464399754 464399308 5.400000e-97 366.0
79 TraesCS3B01G309500 chr6D 82.222 450 50 11 214 634 75643786 75644234 2.510000e-95 361.0
80 TraesCS3B01G309500 chr6D 80.931 451 58 13 211 634 53453613 53454062 1.970000e-86 331.0
81 TraesCS3B01G309500 chr6D 81.222 442 54 13 222 635 421856615 421856175 7.090000e-86 329.0
82 TraesCS3B01G309500 chr6D 80.624 449 56 14 214 633 6852550 6852996 1.530000e-82 318.0
83 TraesCS3B01G309500 chr6D 78.070 456 70 13 222 649 463980315 463979862 2.620000e-65 261.0
84 TraesCS3B01G309500 chr6D 77.124 459 57 22 203 634 101443681 101444118 1.240000e-53 222.0
85 TraesCS3B01G309500 chr6D 87.952 166 19 1 217 382 38075177 38075013 2.700000e-45 195.0
86 TraesCS3B01G309500 chr6D 87.952 166 19 1 217 382 125572604 125572440 2.700000e-45 195.0
87 TraesCS3B01G309500 chr6D 86.550 171 20 3 214 382 254770368 254770537 1.620000e-42 185.0
88 TraesCS3B01G309500 chr6D 86.747 166 21 1 217 382 448433239 448433403 5.840000e-42 183.0
89 TraesCS3B01G309500 chr6D 85.549 173 23 1 217 389 238719734 238719904 7.550000e-41 180.0
90 TraesCS3B01G309500 chr6D 85.799 169 23 1 214 382 51739589 51739756 2.720000e-40 178.0
91 TraesCS3B01G309500 chr6D 84.916 179 24 3 204 382 305433903 305434078 2.720000e-40 178.0
92 TraesCS3B01G309500 chr6D 84.916 179 24 3 204 382 312515802 312515977 2.720000e-40 178.0
93 TraesCS3B01G309500 chr5A 82.743 452 50 12 221 646 438145243 438144794 2.500000e-100 377.0
94 TraesCS3B01G309500 chr5A 84.211 171 14 10 24 192 241136286 241136127 4.580000e-33 154.0
95 TraesCS3B01G309500 chr1D 82.688 439 57 8 217 639 349569241 349568806 1.160000e-98 372.0
96 TraesCS3B01G309500 chr1D 82.472 445 49 10 217 634 336628455 336628013 6.990000e-96 363.0
97 TraesCS3B01G309500 chr1D 81.798 445 53 13 217 634 342588952 342588509 1.960000e-91 348.0
98 TraesCS3B01G309500 chr1D 80.931 451 54 13 214 634 343523006 343523454 2.550000e-85 327.0
99 TraesCS3B01G309500 chr1D 80.899 445 57 17 217 634 408618299 408617856 9.170000e-85 326.0
100 TraesCS3B01G309500 chr1D 80.804 448 54 13 217 634 343795547 343795102 1.190000e-83 322.0
101 TraesCS3B01G309500 chr1D 80.710 451 55 12 214 634 363893275 363893723 1.190000e-83 322.0
102 TraesCS3B01G309500 chr1D 78.971 447 54 18 217 636 451395994 451396427 1.570000e-67 268.0
103 TraesCS3B01G309500 chr1D 78.091 461 56 18 203 634 326447948 326448392 5.680000e-62 250.0
104 TraesCS3B01G309500 chr7A 81.237 469 56 15 213 653 63553357 63552893 5.440000e-92 350.0
105 TraesCS3B01G309500 chr5D 82.005 439 50 10 222 633 47348595 47348159 7.040000e-91 346.0
106 TraesCS3B01G309500 chr5D 87.952 166 18 2 217 382 101649369 101649532 2.700000e-45 195.0
107 TraesCS3B01G309500 chr5D 87.952 166 19 1 217 382 103776462 103776298 2.700000e-45 195.0
108 TraesCS3B01G309500 chr5D 83.422 187 18 10 24 208 168635549 168635374 2.740000e-35 161.0
109 TraesCS3B01G309500 chr4A 81.514 449 55 12 222 642 483367262 483366814 2.530000e-90 344.0
110 TraesCS3B01G309500 chr4A 80.178 449 59 14 212 634 515773069 515773513 9.240000e-80 309.0
111 TraesCS3B01G309500 chr4A 86.611 239 26 3 401 634 25249673 25249436 9.430000e-65 259.0
112 TraesCS3B01G309500 chr6A 81.556 450 50 16 224 645 187908611 187908167 3.270000e-89 340.0
113 TraesCS3B01G309500 chrUn 81.348 445 53 13 217 633 127036995 127036553 1.520000e-87 335.0
114 TraesCS3B01G309500 chrUn 79.955 449 51 14 203 624 45764379 45763943 2.590000e-75 294.0
115 TraesCS3B01G309500 chrUn 80.186 429 50 17 217 634 305980323 305979919 1.200000e-73 289.0
116 TraesCS3B01G309500 chrUn 80.093 432 51 17 214 634 306331416 306331823 1.200000e-73 289.0
117 TraesCS3B01G309500 chrUn 80.186 429 50 17 217 634 312672700 312672296 1.200000e-73 289.0
118 TraesCS3B01G309500 chrUn 79.176 461 59 15 222 646 335648143 335647684 1.560000e-72 285.0
119 TraesCS3B01G309500 chrUn 81.818 341 38 11 217 535 44937054 44937392 2.030000e-66 265.0
120 TraesCS3B01G309500 chrUn 79.648 398 49 12 222 588 467835428 467835824 3.390000e-64 257.0
121 TraesCS3B01G309500 chrUn 76.957 460 58 17 203 634 70251433 70250994 1.600000e-52 219.0
122 TraesCS3B01G309500 chrUn 76.790 461 58 19 203 634 83277665 83277225 7.450000e-51 213.0
123 TraesCS3B01G309500 chrUn 83.264 239 30 5 402 634 20167838 20168072 2.680000e-50 211.0
124 TraesCS3B01G309500 chrUn 82.917 240 31 6 401 634 97943063 97942828 3.470000e-49 207.0
125 TraesCS3B01G309500 chrUn 76.522 460 60 20 203 634 101480665 101480226 3.470000e-49 207.0
126 TraesCS3B01G309500 chrUn 76.304 460 61 17 203 634 112428550 112428989 1.610000e-47 202.0
127 TraesCS3B01G309500 chrUn 86.145 166 22 1 217 382 476428031 476427867 2.720000e-40 178.0
128 TraesCS3B01G309500 chrUn 84.431 167 24 2 217 382 91741434 91741599 7.610000e-36 163.0
129 TraesCS3B01G309500 chrUn 82.883 111 18 1 203 313 55920985 55920876 2.180000e-16 99.0
130 TraesCS3B01G309500 chrUn 94.118 51 2 1 590 639 254467560 254467610 1.020000e-09 76.8
131 TraesCS3B01G309500 chrUn 95.556 45 2 0 590 634 78880531 78880487 1.320000e-08 73.1
132 TraesCS3B01G309500 chr7D 81.140 456 52 17 211 633 629575874 629576328 1.520000e-87 335.0
133 TraesCS3B01G309500 chr7D 82.184 348 38 9 219 544 180131497 180131842 2.600000e-70 278.0
134 TraesCS3B01G309500 chr2B 88.024 167 18 2 217 382 252543728 252543563 7.500000e-46 196.0
135 TraesCS3B01G309500 chr2B 100.000 29 0 0 6878 6906 170972770 170972798 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G309500 chr3B 498057155 498066623 9468 True 8524.500000 11815 100.000000 1 9469 2 chr3B.!!$R4 9468
1 TraesCS3B01G309500 chr3B 672373130 672373753 623 False 821.000000 821 90.400000 6266 6889 1 chr3B.!!$F4 623
2 TraesCS3B01G309500 chr3B 739943848 739944480 632 True 774.000000 774 88.801000 6261 6892 1 chr3B.!!$R3 631
3 TraesCS3B01G309500 chr3B 499450792 499451691 899 False 505.000000 505 77.434000 1135 2004 1 chr3B.!!$F3 869
4 TraesCS3B01G309500 chr3D 382113191 382118333 5142 True 1041.800000 2316 94.623400 826 4692 5 chr3D.!!$R3 3866
5 TraesCS3B01G309500 chr3D 382102300 382105259 2959 True 983.925000 2963 93.615750 4750 9469 4 chr3D.!!$R2 4719
6 TraesCS3B01G309500 chr3D 382495161 382505911 10750 True 723.500000 2473 90.327300 642 9449 10 chr3D.!!$R4 8807
7 TraesCS3B01G309500 chr3D 384247746 384248652 906 False 481.000000 481 76.948000 1131 2004 1 chr3D.!!$F2 873
8 TraesCS3B01G309500 chr3A 505231060 505238995 7935 True 1347.142857 2536 93.980714 656 9469 7 chr3A.!!$R2 8813
9 TraesCS3B01G309500 chr3A 506800378 506801281 903 False 501.000000 501 77.313000 1131 2004 1 chr3A.!!$F1 873
10 TraesCS3B01G309500 chr6B 572385136 572386608 1472 True 2021.000000 2021 91.577000 4803 6268 1 chr6B.!!$R3 1465
11 TraesCS3B01G309500 chr6B 45569195 45571404 2209 True 1457.500000 2052 91.664000 4803 6897 2 chr6B.!!$R5 2094
12 TraesCS3B01G309500 chr6B 107818388 107819071 683 False 920.000000 920 91.279000 4803 5475 1 chr6B.!!$F1 672
13 TraesCS3B01G309500 chr6B 693810822 693811450 628 False 874.000000 874 91.759000 6261 6889 1 chr6B.!!$F2 628
14 TraesCS3B01G309500 chr6B 658297967 658298590 623 True 791.000000 791 89.600000 6269 6891 1 chr6B.!!$R4 622
15 TraesCS3B01G309500 chr6B 423412497 423413119 622 True 763.000000 763 88.818000 6269 6891 1 chr6B.!!$R2 622
16 TraesCS3B01G309500 chr5B 315456686 315458162 1476 False 1993.000000 1993 91.190000 4801 6268 1 chr5B.!!$F1 1467
17 TraesCS3B01G309500 chr5B 458738364 458739821 1457 True 1849.000000 1849 89.630000 4801 6268 1 chr5B.!!$R3 1467
18 TraesCS3B01G309500 chr5B 442776616 442777281 665 True 867.000000 867 90.433000 4801 5457 1 chr5B.!!$R2 656
19 TraesCS3B01G309500 chr4B 585740589 585742072 1483 True 1921.000000 1921 90.247000 4796 6268 1 chr4B.!!$R2 1472
20 TraesCS3B01G309500 chr4B 522288789 522290968 2179 False 1377.000000 1871 91.044500 4798 6893 2 chr4B.!!$F4 2095
21 TraesCS3B01G309500 chr2D 624844097 624845581 1484 True 1703.000000 1703 87.701000 4803 6266 1 chr2D.!!$R3 1463
22 TraesCS3B01G309500 chr2D 586562626 586564108 1482 False 1670.000000 1670 87.316000 4801 6266 1 chr2D.!!$F2 1465
23 TraesCS3B01G309500 chr2D 189288873 189290350 1477 False 1650.000000 1650 87.116000 4801 6266 1 chr2D.!!$F1 1465
24 TraesCS3B01G309500 chr4D 340294258 340295740 1482 False 1700.000000 1700 87.650000 4799 6266 1 chr4D.!!$F3 1467
25 TraesCS3B01G309500 chr4D 503691881 503693359 1478 True 1611.000000 1611 86.604000 4801 6266 1 chr4D.!!$R2 1465
26 TraesCS3B01G309500 chr4D 261258400 261259882 1482 False 1594.000000 1594 86.430000 4803 6263 1 chr4D.!!$F2 1460
27 TraesCS3B01G309500 chr7B 210790951 210792434 1483 True 1616.000000 1616 86.676000 4801 6266 1 chr7B.!!$R2 1465
28 TraesCS3B01G309500 chr7B 97967044 97967673 629 True 797.000000 797 89.524000 6265 6892 1 chr7B.!!$R1 627
29 TraesCS3B01G309500 chr2A 47764845 47766289 1444 False 1544.000000 1544 86.292000 4836 6263 1 chr2A.!!$F1 1427
30 TraesCS3B01G309500 chr1B 467620127 467620752 625 True 791.000000 791 89.490000 6265 6891 1 chr1B.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 492 0.036388 CACCAGTTACCATCACGCCT 60.036 55.000 0.00 0.00 0.00 5.52 F
620 621 0.038435 TGTTTCGTGCAATGCATGGG 60.038 50.000 25.08 11.84 44.68 4.00 F
2234 2326 0.899717 ATGCCAAAACCGCTCACCAT 60.900 50.000 0.00 0.00 0.00 3.55 F
2348 2461 0.107214 AATCCGTGCCATAGGTGTGG 60.107 55.000 0.00 0.00 42.35 4.17 F
2581 3029 0.535102 CTGACCCAAACAGCGGAACT 60.535 55.000 0.00 0.00 0.00 3.01 F
3722 5468 0.314618 TGCAAGCCGTAACTCGTACA 59.685 50.000 0.00 0.00 37.94 2.90 F
4247 6066 0.166814 GTTCAGGCGTGTGATGCTTC 59.833 55.000 6.26 0.00 0.00 3.86 F
5517 7427 1.531149 CACCTTCGCGAACTCACATTT 59.469 47.619 19.38 0.00 0.00 2.32 F
6116 8033 0.324645 AATCCCTTCAAGCCCGCAAT 60.325 50.000 0.00 0.00 0.00 3.56 F
7114 10892 0.387622 CGTTTCTCCGCCGTTGTCTA 60.388 55.000 0.00 0.00 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2302 0.033366 GAGCGGTTTTGGCATTTGGT 59.967 50.0 0.00 0.0 0.00 3.67 R
2265 2359 0.108585 GGCACTGAAGTGGAAGTGGA 59.891 55.0 12.20 0.0 45.72 4.02 R
3680 4389 0.107165 GGTGCCTAACTAAGGGCCTG 60.107 60.0 6.92 0.0 46.65 4.85 R
3722 5468 0.802494 CGCTCGTAGTTTTTGGCCAT 59.198 50.0 6.09 0.0 0.00 4.40 R
3737 5483 1.542544 GCATGCATTTCAACTCGCTC 58.457 50.0 14.21 0.0 0.00 5.03 R
5714 7626 0.525761 TTGCTTCTTTGGTATGCCGC 59.474 50.0 0.00 0.0 37.67 6.53 R
5916 7829 0.462047 GGGCACCGAACGAAGATGAT 60.462 55.0 0.00 0.0 40.86 2.45 R
6955 9442 0.695347 GGGGATCTATTGGAGCTGGG 59.305 60.0 0.00 0.0 0.00 4.45 R
7624 13110 0.605319 TGAGTTTTGGCTAGTGGGCG 60.605 55.0 0.00 0.0 44.11 6.13 R
8765 14325 0.753867 TCACAAGAACTACGGGTGCA 59.246 50.0 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.164843 GGGGTATTAATCAGAAGCCACA 57.835 45.455 6.53 0.00 0.00 4.17
22 23 3.883489 GGGGTATTAATCAGAAGCCACAC 59.117 47.826 6.53 0.00 0.00 3.82
23 24 3.560068 GGGTATTAATCAGAAGCCACACG 59.440 47.826 0.00 0.00 0.00 4.49
24 25 4.439057 GGTATTAATCAGAAGCCACACGA 58.561 43.478 0.00 0.00 0.00 4.35
25 26 4.873827 GGTATTAATCAGAAGCCACACGAA 59.126 41.667 0.00 0.00 0.00 3.85
26 27 5.006746 GGTATTAATCAGAAGCCACACGAAG 59.993 44.000 0.00 0.00 0.00 3.79
43 44 5.825593 ACGAAGTGGGATACAATATGGAT 57.174 39.130 0.00 0.00 42.51 3.41
44 45 5.794894 ACGAAGTGGGATACAATATGGATC 58.205 41.667 0.00 0.00 42.51 3.36
45 46 4.864806 CGAAGTGGGATACAATATGGATCG 59.135 45.833 0.00 0.00 38.62 3.69
46 47 5.566826 CGAAGTGGGATACAATATGGATCGT 60.567 44.000 0.00 0.00 38.62 3.73
47 48 5.152623 AGTGGGATACAATATGGATCGTG 57.847 43.478 0.00 0.00 38.62 4.35
48 49 4.020218 AGTGGGATACAATATGGATCGTGG 60.020 45.833 0.00 0.00 38.62 4.94
49 50 3.263170 TGGGATACAATATGGATCGTGGG 59.737 47.826 0.00 0.00 38.62 4.61
50 51 3.370527 GGGATACAATATGGATCGTGGGG 60.371 52.174 0.00 0.00 38.62 4.96
51 52 3.263425 GGATACAATATGGATCGTGGGGT 59.737 47.826 0.00 0.00 38.62 4.95
52 53 2.638480 ACAATATGGATCGTGGGGTG 57.362 50.000 0.00 0.00 0.00 4.61
53 54 2.123589 ACAATATGGATCGTGGGGTGA 58.876 47.619 0.00 0.00 0.00 4.02
54 55 2.507886 ACAATATGGATCGTGGGGTGAA 59.492 45.455 0.00 0.00 0.00 3.18
55 56 3.053991 ACAATATGGATCGTGGGGTGAAA 60.054 43.478 0.00 0.00 0.00 2.69
56 57 2.702592 TATGGATCGTGGGGTGAAAC 57.297 50.000 0.00 0.00 0.00 2.78
69 70 0.663153 GTGAAACCAGATATGGCGCC 59.337 55.000 22.73 22.73 0.00 6.53
70 71 0.465460 TGAAACCAGATATGGCGCCC 60.465 55.000 26.77 8.39 0.00 6.13
71 72 1.152756 AAACCAGATATGGCGCCCC 60.153 57.895 26.77 10.65 0.00 5.80
72 73 1.645402 AAACCAGATATGGCGCCCCT 61.645 55.000 26.77 14.39 0.00 4.79
73 74 2.056906 AACCAGATATGGCGCCCCTC 62.057 60.000 26.77 17.57 0.00 4.30
74 75 2.519622 CCAGATATGGCGCCCCTCA 61.520 63.158 26.77 4.98 0.00 3.86
75 76 1.681666 CAGATATGGCGCCCCTCAT 59.318 57.895 26.77 13.56 0.00 2.90
76 77 0.392193 CAGATATGGCGCCCCTCATC 60.392 60.000 26.77 19.58 0.00 2.92
77 78 1.078143 GATATGGCGCCCCTCATCC 60.078 63.158 26.77 2.52 0.00 3.51
78 79 1.841302 GATATGGCGCCCCTCATCCA 61.841 60.000 26.77 1.65 0.00 3.41
79 80 1.845627 ATATGGCGCCCCTCATCCAG 61.846 60.000 26.77 0.00 31.36 3.86
80 81 2.963391 TATGGCGCCCCTCATCCAGA 62.963 60.000 26.77 0.00 31.36 3.86
81 82 4.247380 GGCGCCCCTCATCCAGAG 62.247 72.222 18.11 0.00 44.31 3.35
97 98 7.820648 TCATCCAGAGAATTTGAAAACTTAGC 58.179 34.615 0.00 0.00 0.00 3.09
98 99 7.667219 TCATCCAGAGAATTTGAAAACTTAGCT 59.333 33.333 0.00 0.00 0.00 3.32
99 100 8.950210 CATCCAGAGAATTTGAAAACTTAGCTA 58.050 33.333 0.00 0.00 0.00 3.32
100 101 8.918202 TCCAGAGAATTTGAAAACTTAGCTAA 57.082 30.769 5.94 5.94 0.00 3.09
101 102 9.349713 TCCAGAGAATTTGAAAACTTAGCTAAA 57.650 29.630 7.74 0.00 0.00 1.85
102 103 9.399403 CCAGAGAATTTGAAAACTTAGCTAAAC 57.601 33.333 7.74 0.00 0.00 2.01
123 124 7.654022 AAACTTAGCTAGACTATCTGCTTCT 57.346 36.000 0.00 0.00 34.44 2.85
124 125 8.754991 AAACTTAGCTAGACTATCTGCTTCTA 57.245 34.615 0.00 0.00 34.44 2.10
125 126 8.934023 AACTTAGCTAGACTATCTGCTTCTAT 57.066 34.615 0.00 0.00 34.44 1.98
131 132 9.120538 AGCTAGACTATCTGCTTCTATATTAGC 57.879 37.037 0.00 0.00 37.89 3.09
132 133 8.349983 GCTAGACTATCTGCTTCTATATTAGCC 58.650 40.741 0.00 0.00 36.56 3.93
133 134 7.328277 AGACTATCTGCTTCTATATTAGCCG 57.672 40.000 0.00 0.00 36.56 5.52
134 135 6.320164 AGACTATCTGCTTCTATATTAGCCGG 59.680 42.308 0.00 0.00 36.56 6.13
135 136 5.952947 ACTATCTGCTTCTATATTAGCCGGT 59.047 40.000 1.90 0.00 36.56 5.28
136 137 4.785511 TCTGCTTCTATATTAGCCGGTC 57.214 45.455 1.90 0.00 36.56 4.79
137 138 4.408276 TCTGCTTCTATATTAGCCGGTCT 58.592 43.478 1.90 3.10 36.56 3.85
138 139 4.833380 TCTGCTTCTATATTAGCCGGTCTT 59.167 41.667 1.90 0.00 36.56 3.01
139 140 5.047943 TCTGCTTCTATATTAGCCGGTCTTC 60.048 44.000 1.90 0.00 36.56 2.87
140 141 4.021368 TGCTTCTATATTAGCCGGTCTTCC 60.021 45.833 1.90 0.00 36.56 3.46
141 142 4.221041 GCTTCTATATTAGCCGGTCTTCCT 59.779 45.833 1.90 0.00 0.00 3.36
142 143 5.279556 GCTTCTATATTAGCCGGTCTTCCTT 60.280 44.000 1.90 0.00 0.00 3.36
143 144 5.979288 TCTATATTAGCCGGTCTTCCTTC 57.021 43.478 1.90 0.00 0.00 3.46
144 145 5.391256 TCTATATTAGCCGGTCTTCCTTCA 58.609 41.667 1.90 0.00 0.00 3.02
145 146 5.836898 TCTATATTAGCCGGTCTTCCTTCAA 59.163 40.000 1.90 0.00 0.00 2.69
146 147 3.713826 ATTAGCCGGTCTTCCTTCAAA 57.286 42.857 1.90 0.00 0.00 2.69
147 148 3.495434 TTAGCCGGTCTTCCTTCAAAA 57.505 42.857 1.90 0.00 0.00 2.44
148 149 1.897560 AGCCGGTCTTCCTTCAAAAG 58.102 50.000 1.90 0.00 0.00 2.27
149 150 1.143073 AGCCGGTCTTCCTTCAAAAGT 59.857 47.619 1.90 0.00 0.00 2.66
150 151 2.370849 AGCCGGTCTTCCTTCAAAAGTA 59.629 45.455 1.90 0.00 0.00 2.24
151 152 3.143728 GCCGGTCTTCCTTCAAAAGTAA 58.856 45.455 1.90 0.00 0.00 2.24
152 153 3.566742 GCCGGTCTTCCTTCAAAAGTAAA 59.433 43.478 1.90 0.00 0.00 2.01
153 154 4.217767 GCCGGTCTTCCTTCAAAAGTAAAT 59.782 41.667 1.90 0.00 0.00 1.40
154 155 5.278808 GCCGGTCTTCCTTCAAAAGTAAATT 60.279 40.000 1.90 0.00 0.00 1.82
155 156 6.737622 GCCGGTCTTCCTTCAAAAGTAAATTT 60.738 38.462 1.90 0.00 0.00 1.82
156 157 6.640907 CCGGTCTTCCTTCAAAAGTAAATTTG 59.359 38.462 0.00 0.00 40.78 2.32
157 158 6.143919 CGGTCTTCCTTCAAAAGTAAATTTGC 59.856 38.462 0.00 0.00 39.57 3.68
158 159 6.983890 GGTCTTCCTTCAAAAGTAAATTTGCA 59.016 34.615 9.04 0.00 39.57 4.08
159 160 7.169813 GGTCTTCCTTCAAAAGTAAATTTGCAG 59.830 37.037 9.04 0.00 39.57 4.41
161 162 6.478512 TCCTTCAAAAGTAAATTTGCAGGT 57.521 33.333 14.89 0.00 46.91 4.00
162 163 7.589958 TCCTTCAAAAGTAAATTTGCAGGTA 57.410 32.000 14.89 3.70 46.91 3.08
163 164 8.012957 TCCTTCAAAAGTAAATTTGCAGGTAA 57.987 30.769 14.89 0.00 46.91 2.85
164 165 8.478877 TCCTTCAAAAGTAAATTTGCAGGTAAA 58.521 29.630 14.89 0.00 46.91 2.01
165 166 9.103861 CCTTCAAAAGTAAATTTGCAGGTAAAA 57.896 29.630 9.04 0.00 43.99 1.52
169 170 9.662545 CAAAAGTAAATTTGCAGGTAAAATTGG 57.337 29.630 9.04 0.00 37.32 3.16
170 171 9.620259 AAAAGTAAATTTGCAGGTAAAATTGGA 57.380 25.926 9.04 0.00 37.32 3.53
171 172 8.601845 AAGTAAATTTGCAGGTAAAATTGGAC 57.398 30.769 9.04 0.00 37.32 4.02
172 173 6.866248 AGTAAATTTGCAGGTAAAATTGGACG 59.134 34.615 9.04 0.00 37.32 4.79
173 174 2.715737 TTGCAGGTAAAATTGGACGC 57.284 45.000 0.00 0.00 0.00 5.19
174 175 1.904287 TGCAGGTAAAATTGGACGCT 58.096 45.000 0.00 0.00 0.00 5.07
175 176 1.810151 TGCAGGTAAAATTGGACGCTC 59.190 47.619 0.00 0.00 0.00 5.03
176 177 1.202031 GCAGGTAAAATTGGACGCTCG 60.202 52.381 0.00 0.00 0.00 5.03
177 178 1.084289 AGGTAAAATTGGACGCTCGC 58.916 50.000 0.00 0.00 0.00 5.03
178 179 1.084289 GGTAAAATTGGACGCTCGCT 58.916 50.000 0.00 0.00 0.00 4.93
179 180 1.202031 GGTAAAATTGGACGCTCGCTG 60.202 52.381 0.00 0.00 0.00 5.18
180 181 0.446222 TAAAATTGGACGCTCGCTGC 59.554 50.000 0.00 0.00 38.57 5.25
181 182 1.237285 AAAATTGGACGCTCGCTGCT 61.237 50.000 0.00 0.00 40.11 4.24
182 183 1.237285 AAATTGGACGCTCGCTGCTT 61.237 50.000 0.00 0.00 40.11 3.91
183 184 1.915614 AATTGGACGCTCGCTGCTTG 61.916 55.000 0.00 0.00 40.11 4.01
184 185 2.786539 ATTGGACGCTCGCTGCTTGA 62.787 55.000 0.00 0.00 40.11 3.02
185 186 2.510238 GGACGCTCGCTGCTTGAT 60.510 61.111 0.00 0.00 40.11 2.57
186 187 2.520904 GGACGCTCGCTGCTTGATC 61.521 63.158 0.00 0.00 40.11 2.92
187 188 1.518133 GACGCTCGCTGCTTGATCT 60.518 57.895 0.00 0.00 40.11 2.75
188 189 1.478622 GACGCTCGCTGCTTGATCTC 61.479 60.000 0.00 0.00 40.11 2.75
189 190 2.236382 CGCTCGCTGCTTGATCTCC 61.236 63.158 0.00 0.00 40.11 3.71
190 191 1.886777 GCTCGCTGCTTGATCTCCC 60.887 63.158 0.00 0.00 38.95 4.30
191 192 1.821936 CTCGCTGCTTGATCTCCCT 59.178 57.895 0.00 0.00 0.00 4.20
192 193 0.530211 CTCGCTGCTTGATCTCCCTG 60.530 60.000 0.00 0.00 0.00 4.45
193 194 0.972471 TCGCTGCTTGATCTCCCTGA 60.972 55.000 0.00 0.00 0.00 3.86
194 195 0.530211 CGCTGCTTGATCTCCCTGAG 60.530 60.000 0.00 0.00 0.00 3.35
195 196 0.829333 GCTGCTTGATCTCCCTGAGA 59.171 55.000 0.00 0.00 43.20 3.27
196 197 1.209019 GCTGCTTGATCTCCCTGAGAA 59.791 52.381 0.00 0.00 42.27 2.87
197 198 2.158784 GCTGCTTGATCTCCCTGAGAAT 60.159 50.000 0.00 0.00 42.27 2.40
198 199 3.070734 GCTGCTTGATCTCCCTGAGAATA 59.929 47.826 0.00 0.00 42.27 1.75
199 200 4.630111 CTGCTTGATCTCCCTGAGAATAC 58.370 47.826 0.00 0.00 42.27 1.89
200 201 4.293494 TGCTTGATCTCCCTGAGAATACT 58.707 43.478 0.00 0.00 42.27 2.12
201 202 4.343526 TGCTTGATCTCCCTGAGAATACTC 59.656 45.833 0.00 0.00 42.27 2.59
202 203 4.262420 GCTTGATCTCCCTGAGAATACTCC 60.262 50.000 0.00 0.00 42.27 3.85
203 204 3.850752 TGATCTCCCTGAGAATACTCCC 58.149 50.000 0.00 0.00 42.27 4.30
204 205 3.207549 TGATCTCCCTGAGAATACTCCCA 59.792 47.826 0.00 0.00 42.27 4.37
205 206 4.140591 TGATCTCCCTGAGAATACTCCCAT 60.141 45.833 0.00 0.00 42.27 4.00
206 207 5.076458 TGATCTCCCTGAGAATACTCCCATA 59.924 44.000 0.00 0.00 42.27 2.74
207 208 5.004361 TCTCCCTGAGAATACTCCCATAG 57.996 47.826 0.00 0.00 41.99 2.23
208 209 3.511477 TCCCTGAGAATACTCCCATAGC 58.489 50.000 0.00 0.00 41.99 2.97
209 210 3.142977 TCCCTGAGAATACTCCCATAGCT 59.857 47.826 0.00 0.00 41.99 3.32
210 211 4.357097 TCCCTGAGAATACTCCCATAGCTA 59.643 45.833 0.00 0.00 41.99 3.32
211 212 5.087323 CCCTGAGAATACTCCCATAGCTAA 58.913 45.833 0.00 0.00 41.99 3.09
212 213 5.046950 CCCTGAGAATACTCCCATAGCTAAC 60.047 48.000 0.00 0.00 41.99 2.34
213 214 5.540337 CCTGAGAATACTCCCATAGCTAACA 59.460 44.000 0.00 0.00 41.99 2.41
214 215 6.212388 CCTGAGAATACTCCCATAGCTAACAT 59.788 42.308 0.00 0.00 41.99 2.71
215 216 7.256475 CCTGAGAATACTCCCATAGCTAACATT 60.256 40.741 0.00 0.00 41.99 2.71
216 217 8.034313 TGAGAATACTCCCATAGCTAACATTT 57.966 34.615 0.00 0.00 41.99 2.32
217 218 8.150945 TGAGAATACTCCCATAGCTAACATTTC 58.849 37.037 0.00 0.00 41.99 2.17
218 219 8.268878 AGAATACTCCCATAGCTAACATTTCT 57.731 34.615 0.00 0.00 0.00 2.52
219 220 9.381038 AGAATACTCCCATAGCTAACATTTCTA 57.619 33.333 0.00 0.00 0.00 2.10
223 224 8.268878 ACTCCCATAGCTAACATTTCTATTCT 57.731 34.615 0.00 0.00 0.00 2.40
224 225 8.718656 ACTCCCATAGCTAACATTTCTATTCTT 58.281 33.333 0.00 0.00 0.00 2.52
257 258 9.920946 AATTAAGTTGGTAATGATGGTGTATCT 57.079 29.630 0.00 0.00 36.71 1.98
258 259 8.731275 TTAAGTTGGTAATGATGGTGTATCTG 57.269 34.615 0.00 0.00 36.71 2.90
259 260 6.313519 AGTTGGTAATGATGGTGTATCTGT 57.686 37.500 0.00 0.00 36.71 3.41
260 261 6.349300 AGTTGGTAATGATGGTGTATCTGTC 58.651 40.000 0.00 0.00 36.71 3.51
261 262 5.948742 TGGTAATGATGGTGTATCTGTCA 57.051 39.130 0.00 0.00 36.71 3.58
262 263 6.499106 TGGTAATGATGGTGTATCTGTCAT 57.501 37.500 0.00 0.00 36.71 3.06
263 264 6.524734 TGGTAATGATGGTGTATCTGTCATC 58.475 40.000 0.00 0.00 36.71 2.92
264 265 6.327365 TGGTAATGATGGTGTATCTGTCATCT 59.673 38.462 0.00 0.00 37.48 2.90
265 266 7.147497 TGGTAATGATGGTGTATCTGTCATCTT 60.147 37.037 0.00 0.00 37.48 2.40
266 267 7.172190 GGTAATGATGGTGTATCTGTCATCTTG 59.828 40.741 0.00 0.00 37.48 3.02
267 268 4.445453 TGATGGTGTATCTGTCATCTTGC 58.555 43.478 0.00 0.00 37.48 4.01
268 269 3.979101 TGGTGTATCTGTCATCTTGCA 57.021 42.857 0.00 0.00 0.00 4.08
269 270 4.284829 TGGTGTATCTGTCATCTTGCAA 57.715 40.909 0.00 0.00 0.00 4.08
270 271 4.847198 TGGTGTATCTGTCATCTTGCAAT 58.153 39.130 0.00 0.00 0.00 3.56
271 272 5.988287 TGGTGTATCTGTCATCTTGCAATA 58.012 37.500 0.00 0.00 0.00 1.90
272 273 6.594744 TGGTGTATCTGTCATCTTGCAATAT 58.405 36.000 0.00 0.00 0.00 1.28
273 274 7.734942 TGGTGTATCTGTCATCTTGCAATATA 58.265 34.615 0.00 0.00 0.00 0.86
274 275 7.874528 TGGTGTATCTGTCATCTTGCAATATAG 59.125 37.037 0.00 0.00 0.00 1.31
275 276 8.090831 GGTGTATCTGTCATCTTGCAATATAGA 58.909 37.037 0.00 0.00 0.00 1.98
276 277 8.920665 GTGTATCTGTCATCTTGCAATATAGAC 58.079 37.037 0.00 9.47 0.00 2.59
277 278 8.090831 TGTATCTGTCATCTTGCAATATAGACC 58.909 37.037 16.89 6.42 0.00 3.85
278 279 5.532557 TCTGTCATCTTGCAATATAGACCG 58.467 41.667 16.89 13.38 0.00 4.79
279 280 5.069119 TCTGTCATCTTGCAATATAGACCGT 59.931 40.000 16.89 0.00 0.00 4.83
280 281 5.289595 TGTCATCTTGCAATATAGACCGTC 58.710 41.667 16.89 0.00 0.00 4.79
281 282 4.686554 GTCATCTTGCAATATAGACCGTCC 59.313 45.833 0.00 0.00 0.00 4.79
282 283 3.364889 TCTTGCAATATAGACCGTCCG 57.635 47.619 0.00 0.00 0.00 4.79
283 284 2.953648 TCTTGCAATATAGACCGTCCGA 59.046 45.455 0.00 0.00 0.00 4.55
284 285 3.572682 TCTTGCAATATAGACCGTCCGAT 59.427 43.478 0.00 0.00 0.00 4.18
285 286 3.570926 TGCAATATAGACCGTCCGATC 57.429 47.619 0.00 0.00 0.00 3.69
286 287 3.154710 TGCAATATAGACCGTCCGATCT 58.845 45.455 0.00 0.00 0.00 2.75
287 288 4.329392 TGCAATATAGACCGTCCGATCTA 58.671 43.478 0.00 0.00 32.11 1.98
288 289 4.948004 TGCAATATAGACCGTCCGATCTAT 59.052 41.667 8.53 8.53 40.47 1.98
289 290 6.117488 TGCAATATAGACCGTCCGATCTATA 58.883 40.000 12.02 12.02 42.05 1.31
290 291 6.771267 TGCAATATAGACCGTCCGATCTATAT 59.229 38.462 14.93 14.93 46.24 0.86
294 295 8.975663 ATATAGACCGTCCGATCTATATTTGA 57.024 34.615 14.93 0.00 43.76 2.69
295 296 7.883391 ATAGACCGTCCGATCTATATTTGAT 57.117 36.000 1.71 0.00 36.57 2.57
296 297 5.955488 AGACCGTCCGATCTATATTTGATG 58.045 41.667 0.00 0.00 0.00 3.07
297 298 5.710567 AGACCGTCCGATCTATATTTGATGA 59.289 40.000 0.00 0.00 0.00 2.92
298 299 6.208797 AGACCGTCCGATCTATATTTGATGAA 59.791 38.462 0.00 0.00 0.00 2.57
299 300 6.936279 ACCGTCCGATCTATATTTGATGAAT 58.064 36.000 0.00 0.00 0.00 2.57
300 301 8.063200 ACCGTCCGATCTATATTTGATGAATA 57.937 34.615 0.00 0.00 34.82 1.75
301 302 8.191446 ACCGTCCGATCTATATTTGATGAATAG 58.809 37.037 0.00 0.00 33.87 1.73
302 303 8.406297 CCGTCCGATCTATATTTGATGAATAGA 58.594 37.037 0.00 0.00 36.82 1.98
303 304 9.788960 CGTCCGATCTATATTTGATGAATAGAA 57.211 33.333 0.00 0.00 36.20 2.10
351 352 6.743575 AAAAATACATGCACCTCTCTACAC 57.256 37.500 0.00 0.00 0.00 2.90
352 353 5.420725 AAATACATGCACCTCTCTACACA 57.579 39.130 0.00 0.00 0.00 3.72
353 354 5.620738 AATACATGCACCTCTCTACACAT 57.379 39.130 0.00 0.00 0.00 3.21
354 355 3.988976 ACATGCACCTCTCTACACATT 57.011 42.857 0.00 0.00 0.00 2.71
355 356 4.292186 ACATGCACCTCTCTACACATTT 57.708 40.909 0.00 0.00 0.00 2.32
356 357 4.005650 ACATGCACCTCTCTACACATTTG 58.994 43.478 0.00 0.00 0.00 2.32
357 358 2.426522 TGCACCTCTCTACACATTTGC 58.573 47.619 0.00 0.00 0.00 3.68
358 359 2.224499 TGCACCTCTCTACACATTTGCA 60.224 45.455 0.00 0.00 36.42 4.08
359 360 2.417933 GCACCTCTCTACACATTTGCAG 59.582 50.000 0.00 0.00 0.00 4.41
360 361 3.866066 GCACCTCTCTACACATTTGCAGA 60.866 47.826 0.00 0.00 0.00 4.26
361 362 4.511527 CACCTCTCTACACATTTGCAGAT 58.488 43.478 0.00 0.00 0.00 2.90
362 363 5.664457 CACCTCTCTACACATTTGCAGATA 58.336 41.667 0.00 0.00 0.00 1.98
363 364 6.108687 CACCTCTCTACACATTTGCAGATAA 58.891 40.000 0.00 0.00 0.00 1.75
364 365 6.257411 CACCTCTCTACACATTTGCAGATAAG 59.743 42.308 0.00 0.00 0.00 1.73
365 366 5.757320 CCTCTCTACACATTTGCAGATAAGG 59.243 44.000 0.00 0.00 0.00 2.69
366 367 6.407412 CCTCTCTACACATTTGCAGATAAGGA 60.407 42.308 5.35 0.00 0.00 3.36
367 368 6.341316 TCTCTACACATTTGCAGATAAGGAC 58.659 40.000 0.00 0.00 0.00 3.85
368 369 6.155221 TCTCTACACATTTGCAGATAAGGACT 59.845 38.462 0.00 0.00 0.00 3.85
369 370 6.711277 TCTACACATTTGCAGATAAGGACTT 58.289 36.000 0.00 0.00 0.00 3.01
370 371 5.886960 ACACATTTGCAGATAAGGACTTC 57.113 39.130 0.00 0.00 0.00 3.01
371 372 4.702131 ACACATTTGCAGATAAGGACTTCC 59.298 41.667 0.00 0.00 0.00 3.46
372 373 4.096984 CACATTTGCAGATAAGGACTTCCC 59.903 45.833 0.00 0.00 36.42 3.97
382 383 1.196012 AGGACTTCCCTCGTTCATCC 58.804 55.000 0.00 0.00 43.31 3.51
383 384 0.178301 GGACTTCCCTCGTTCATCCC 59.822 60.000 0.00 0.00 0.00 3.85
384 385 1.196012 GACTTCCCTCGTTCATCCCT 58.804 55.000 0.00 0.00 0.00 4.20
385 386 2.385803 GACTTCCCTCGTTCATCCCTA 58.614 52.381 0.00 0.00 0.00 3.53
386 387 2.966516 GACTTCCCTCGTTCATCCCTAT 59.033 50.000 0.00 0.00 0.00 2.57
387 388 2.966516 ACTTCCCTCGTTCATCCCTATC 59.033 50.000 0.00 0.00 0.00 2.08
388 389 3.235200 CTTCCCTCGTTCATCCCTATCT 58.765 50.000 0.00 0.00 0.00 1.98
389 390 3.330126 TCCCTCGTTCATCCCTATCTT 57.670 47.619 0.00 0.00 0.00 2.40
390 391 4.464652 TCCCTCGTTCATCCCTATCTTA 57.535 45.455 0.00 0.00 0.00 2.10
391 392 4.811498 TCCCTCGTTCATCCCTATCTTAA 58.189 43.478 0.00 0.00 0.00 1.85
392 393 5.213519 TCCCTCGTTCATCCCTATCTTAAA 58.786 41.667 0.00 0.00 0.00 1.52
393 394 5.664006 TCCCTCGTTCATCCCTATCTTAAAA 59.336 40.000 0.00 0.00 0.00 1.52
394 395 5.758784 CCCTCGTTCATCCCTATCTTAAAAC 59.241 44.000 0.00 0.00 0.00 2.43
395 396 6.408206 CCCTCGTTCATCCCTATCTTAAAACT 60.408 42.308 0.00 0.00 0.00 2.66
396 397 7.048512 CCTCGTTCATCCCTATCTTAAAACTT 58.951 38.462 0.00 0.00 0.00 2.66
397 398 7.224949 CCTCGTTCATCCCTATCTTAAAACTTC 59.775 40.741 0.00 0.00 0.00 3.01
398 399 7.617225 TCGTTCATCCCTATCTTAAAACTTCA 58.383 34.615 0.00 0.00 0.00 3.02
399 400 8.265055 TCGTTCATCCCTATCTTAAAACTTCAT 58.735 33.333 0.00 0.00 0.00 2.57
400 401 9.542462 CGTTCATCCCTATCTTAAAACTTCATA 57.458 33.333 0.00 0.00 0.00 2.15
403 404 9.561069 TCATCCCTATCTTAAAACTTCATAAGC 57.439 33.333 0.00 0.00 0.00 3.09
404 405 8.787852 CATCCCTATCTTAAAACTTCATAAGCC 58.212 37.037 0.00 0.00 0.00 4.35
405 406 8.102484 TCCCTATCTTAAAACTTCATAAGCCT 57.898 34.615 0.00 0.00 0.00 4.58
406 407 9.220906 TCCCTATCTTAAAACTTCATAAGCCTA 57.779 33.333 0.00 0.00 0.00 3.93
419 420 9.950496 ACTTCATAAGCCTATAGAACAATATGG 57.050 33.333 0.00 0.00 0.00 2.74
420 421 8.792830 TTCATAAGCCTATAGAACAATATGGC 57.207 34.615 0.00 0.00 39.19 4.40
421 422 7.917003 TCATAAGCCTATAGAACAATATGGCA 58.083 34.615 0.00 0.00 41.12 4.92
422 423 8.551440 TCATAAGCCTATAGAACAATATGGCAT 58.449 33.333 4.88 4.88 41.12 4.40
423 424 8.618677 CATAAGCCTATAGAACAATATGGCATG 58.381 37.037 10.98 0.00 41.12 4.06
424 425 5.503927 AGCCTATAGAACAATATGGCATGG 58.496 41.667 10.98 2.07 41.12 3.66
425 426 5.014544 AGCCTATAGAACAATATGGCATGGT 59.985 40.000 10.98 2.75 41.12 3.55
426 427 5.124457 GCCTATAGAACAATATGGCATGGTG 59.876 44.000 10.98 10.29 38.79 4.17
427 428 5.649395 CCTATAGAACAATATGGCATGGTGG 59.351 44.000 10.98 0.00 0.00 4.61
428 429 2.034124 AGAACAATATGGCATGGTGGC 58.966 47.619 10.98 5.01 44.03 5.01
458 459 4.962836 CGGCCATCCCCATGCCTC 62.963 72.222 2.24 0.00 0.00 4.70
459 460 4.610526 GGCCATCCCCATGCCTCC 62.611 72.222 0.00 0.00 0.00 4.30
460 461 4.962836 GCCATCCCCATGCCTCCG 62.963 72.222 0.00 0.00 0.00 4.63
461 462 4.962836 CCATCCCCATGCCTCCGC 62.963 72.222 0.00 0.00 0.00 5.54
462 463 3.882326 CATCCCCATGCCTCCGCT 61.882 66.667 0.00 0.00 35.36 5.52
463 464 3.564218 ATCCCCATGCCTCCGCTC 61.564 66.667 0.00 0.00 35.36 5.03
465 466 4.559063 CCCCATGCCTCCGCTCAG 62.559 72.222 0.00 0.00 35.36 3.35
466 467 3.790437 CCCATGCCTCCGCTCAGT 61.790 66.667 0.00 0.00 35.36 3.41
467 468 2.202987 CCATGCCTCCGCTCAGTC 60.203 66.667 0.00 0.00 35.36 3.51
468 469 2.202987 CATGCCTCCGCTCAGTCC 60.203 66.667 0.00 0.00 35.36 3.85
469 470 3.842923 ATGCCTCCGCTCAGTCCG 61.843 66.667 0.00 0.00 35.36 4.79
471 472 4.500116 GCCTCCGCTCAGTCCGAC 62.500 72.222 0.00 0.00 0.00 4.79
472 473 3.827898 CCTCCGCTCAGTCCGACC 61.828 72.222 0.00 0.00 0.00 4.79
473 474 3.062466 CTCCGCTCAGTCCGACCA 61.062 66.667 0.00 0.00 0.00 4.02
474 475 3.343788 CTCCGCTCAGTCCGACCAC 62.344 68.421 0.00 0.00 0.00 4.16
475 476 4.436998 CCGCTCAGTCCGACCACC 62.437 72.222 0.00 0.00 0.00 4.61
476 477 3.680786 CGCTCAGTCCGACCACCA 61.681 66.667 0.00 0.00 0.00 4.17
477 478 2.262915 GCTCAGTCCGACCACCAG 59.737 66.667 0.00 0.00 0.00 4.00
478 479 2.574955 GCTCAGTCCGACCACCAGT 61.575 63.158 0.00 0.00 0.00 4.00
479 480 2.050269 CTCAGTCCGACCACCAGTT 58.950 57.895 0.00 0.00 0.00 3.16
480 481 1.254026 CTCAGTCCGACCACCAGTTA 58.746 55.000 0.00 0.00 0.00 2.24
481 482 0.963962 TCAGTCCGACCACCAGTTAC 59.036 55.000 0.00 0.00 0.00 2.50
482 483 0.037605 CAGTCCGACCACCAGTTACC 60.038 60.000 0.00 0.00 0.00 2.85
483 484 0.470456 AGTCCGACCACCAGTTACCA 60.470 55.000 0.00 0.00 0.00 3.25
484 485 0.611714 GTCCGACCACCAGTTACCAT 59.388 55.000 0.00 0.00 0.00 3.55
485 486 0.899720 TCCGACCACCAGTTACCATC 59.100 55.000 0.00 0.00 0.00 3.51
486 487 0.611200 CCGACCACCAGTTACCATCA 59.389 55.000 0.00 0.00 0.00 3.07
487 488 1.674817 CCGACCACCAGTTACCATCAC 60.675 57.143 0.00 0.00 0.00 3.06
488 489 1.722011 GACCACCAGTTACCATCACG 58.278 55.000 0.00 0.00 0.00 4.35
489 490 0.321298 ACCACCAGTTACCATCACGC 60.321 55.000 0.00 0.00 0.00 5.34
490 491 1.024579 CCACCAGTTACCATCACGCC 61.025 60.000 0.00 0.00 0.00 5.68
491 492 0.036388 CACCAGTTACCATCACGCCT 60.036 55.000 0.00 0.00 0.00 5.52
492 493 0.249398 ACCAGTTACCATCACGCCTC 59.751 55.000 0.00 0.00 0.00 4.70
493 494 0.249120 CCAGTTACCATCACGCCTCA 59.751 55.000 0.00 0.00 0.00 3.86
494 495 1.359848 CAGTTACCATCACGCCTCAC 58.640 55.000 0.00 0.00 0.00 3.51
495 496 1.066858 CAGTTACCATCACGCCTCACT 60.067 52.381 0.00 0.00 0.00 3.41
496 497 1.204941 AGTTACCATCACGCCTCACTC 59.795 52.381 0.00 0.00 0.00 3.51
497 498 0.535335 TTACCATCACGCCTCACTCC 59.465 55.000 0.00 0.00 0.00 3.85
498 499 0.324368 TACCATCACGCCTCACTCCT 60.324 55.000 0.00 0.00 0.00 3.69
499 500 1.142748 CCATCACGCCTCACTCCTC 59.857 63.158 0.00 0.00 0.00 3.71
500 501 1.142748 CATCACGCCTCACTCCTCC 59.857 63.158 0.00 0.00 0.00 4.30
501 502 1.000993 ATCACGCCTCACTCCTCCT 59.999 57.895 0.00 0.00 0.00 3.69
502 503 1.040339 ATCACGCCTCACTCCTCCTC 61.040 60.000 0.00 0.00 0.00 3.71
503 504 1.979155 CACGCCTCACTCCTCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
504 505 1.979693 ACGCCTCACTCCTCCTCAC 60.980 63.158 0.00 0.00 0.00 3.51
505 506 2.716017 CGCCTCACTCCTCCTCACC 61.716 68.421 0.00 0.00 0.00 4.02
506 507 1.305718 GCCTCACTCCTCCTCACCT 60.306 63.158 0.00 0.00 0.00 4.00
507 508 0.907230 GCCTCACTCCTCCTCACCTT 60.907 60.000 0.00 0.00 0.00 3.50
508 509 1.619977 GCCTCACTCCTCCTCACCTTA 60.620 57.143 0.00 0.00 0.00 2.69
509 510 2.957312 GCCTCACTCCTCCTCACCTTAT 60.957 54.545 0.00 0.00 0.00 1.73
510 511 2.962421 CCTCACTCCTCCTCACCTTATC 59.038 54.545 0.00 0.00 0.00 1.75
511 512 3.373658 CCTCACTCCTCCTCACCTTATCT 60.374 52.174 0.00 0.00 0.00 1.98
512 513 3.888930 CTCACTCCTCCTCACCTTATCTC 59.111 52.174 0.00 0.00 0.00 2.75
513 514 3.529734 TCACTCCTCCTCACCTTATCTCT 59.470 47.826 0.00 0.00 0.00 3.10
514 515 3.888930 CACTCCTCCTCACCTTATCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
515 516 3.117284 ACTCCTCCTCACCTTATCTCTCC 60.117 52.174 0.00 0.00 0.00 3.71
516 517 3.135279 TCCTCCTCACCTTATCTCTCCT 58.865 50.000 0.00 0.00 0.00 3.69
517 518 3.139397 TCCTCCTCACCTTATCTCTCCTC 59.861 52.174 0.00 0.00 0.00 3.71
518 519 3.140144 CCTCCTCACCTTATCTCTCCTCT 59.860 52.174 0.00 0.00 0.00 3.69
519 520 4.387437 CCTCCTCACCTTATCTCTCCTCTT 60.387 50.000 0.00 0.00 0.00 2.85
520 521 5.208121 CTCCTCACCTTATCTCTCCTCTTT 58.792 45.833 0.00 0.00 0.00 2.52
521 522 5.205056 TCCTCACCTTATCTCTCCTCTTTC 58.795 45.833 0.00 0.00 0.00 2.62
522 523 5.043732 TCCTCACCTTATCTCTCCTCTTTCT 60.044 44.000 0.00 0.00 0.00 2.52
523 524 5.301805 CCTCACCTTATCTCTCCTCTTTCTC 59.698 48.000 0.00 0.00 0.00 2.87
524 525 4.884744 TCACCTTATCTCTCCTCTTTCTCG 59.115 45.833 0.00 0.00 0.00 4.04
525 526 4.884744 CACCTTATCTCTCCTCTTTCTCGA 59.115 45.833 0.00 0.00 0.00 4.04
526 527 5.008613 CACCTTATCTCTCCTCTTTCTCGAG 59.991 48.000 5.93 5.93 0.00 4.04
527 528 5.104277 ACCTTATCTCTCCTCTTTCTCGAGA 60.104 44.000 12.08 12.08 35.46 4.04
528 529 6.003950 CCTTATCTCTCCTCTTTCTCGAGAT 58.996 44.000 17.44 0.00 42.34 2.75
529 530 7.165485 CCTTATCTCTCCTCTTTCTCGAGATA 58.835 42.308 17.44 10.92 40.69 1.98
530 531 7.829211 CCTTATCTCTCCTCTTTCTCGAGATAT 59.171 40.741 17.44 0.00 41.01 1.63
531 532 8.786826 TTATCTCTCCTCTTTCTCGAGATATC 57.213 38.462 17.44 0.00 41.01 1.63
532 533 6.433847 TCTCTCCTCTTTCTCGAGATATCT 57.566 41.667 17.44 4.47 32.42 1.98
533 534 6.837312 TCTCTCCTCTTTCTCGAGATATCTT 58.163 40.000 17.44 0.00 32.42 2.40
534 535 7.287061 TCTCTCCTCTTTCTCGAGATATCTTT 58.713 38.462 17.44 0.00 32.42 2.52
535 536 8.433599 TCTCTCCTCTTTCTCGAGATATCTTTA 58.566 37.037 17.44 0.00 32.42 1.85
536 537 8.615878 TCTCCTCTTTCTCGAGATATCTTTAG 57.384 38.462 17.44 9.03 32.74 1.85
537 538 8.215050 TCTCCTCTTTCTCGAGATATCTTTAGT 58.785 37.037 17.44 0.00 32.74 2.24
538 539 8.754991 TCCTCTTTCTCGAGATATCTTTAGTT 57.245 34.615 17.44 0.00 32.74 2.24
539 540 9.191479 TCCTCTTTCTCGAGATATCTTTAGTTT 57.809 33.333 17.44 0.00 32.74 2.66
540 541 9.810545 CCTCTTTCTCGAGATATCTTTAGTTTT 57.189 33.333 17.44 0.00 32.74 2.43
561 562 8.739972 AGTTTTTACTTATTACTCTTGCATGGG 58.260 33.333 0.00 0.00 0.00 4.00
562 563 8.520351 GTTTTTACTTATTACTCTTGCATGGGT 58.480 33.333 10.33 10.33 0.00 4.51
563 564 7.859325 TTTACTTATTACTCTTGCATGGGTC 57.141 36.000 8.63 0.00 0.00 4.46
564 565 5.435686 ACTTATTACTCTTGCATGGGTCA 57.564 39.130 8.63 0.00 0.00 4.02
565 566 5.815581 ACTTATTACTCTTGCATGGGTCAA 58.184 37.500 8.63 3.14 0.00 3.18
566 567 6.426587 ACTTATTACTCTTGCATGGGTCAAT 58.573 36.000 8.63 9.63 0.00 2.57
567 568 6.543831 ACTTATTACTCTTGCATGGGTCAATC 59.456 38.462 8.63 0.00 0.00 2.67
568 569 2.885135 ACTCTTGCATGGGTCAATCA 57.115 45.000 0.00 0.00 0.00 2.57
569 570 2.440409 ACTCTTGCATGGGTCAATCAC 58.560 47.619 0.00 0.00 0.00 3.06
570 571 2.224843 ACTCTTGCATGGGTCAATCACA 60.225 45.455 0.00 0.00 0.00 3.58
571 572 2.821378 CTCTTGCATGGGTCAATCACAA 59.179 45.455 0.00 0.00 31.12 3.33
572 573 2.557924 TCTTGCATGGGTCAATCACAAC 59.442 45.455 0.00 0.00 31.12 3.32
573 574 1.992538 TGCATGGGTCAATCACAACA 58.007 45.000 0.00 0.00 31.12 3.33
574 575 1.887854 TGCATGGGTCAATCACAACAG 59.112 47.619 0.00 0.00 31.12 3.16
575 576 1.888512 GCATGGGTCAATCACAACAGT 59.111 47.619 0.00 0.00 31.12 3.55
576 577 2.297033 GCATGGGTCAATCACAACAGTT 59.703 45.455 0.00 0.00 31.12 3.16
577 578 3.858129 GCATGGGTCAATCACAACAGTTG 60.858 47.826 12.03 12.03 31.12 3.16
578 579 3.011566 TGGGTCAATCACAACAGTTGT 57.988 42.857 13.53 13.53 46.75 3.32
579 580 3.360867 TGGGTCAATCACAACAGTTGTT 58.639 40.909 16.70 0.03 43.23 2.83
580 581 3.380004 TGGGTCAATCACAACAGTTGTTC 59.620 43.478 16.70 3.66 43.23 3.18
581 582 3.632145 GGGTCAATCACAACAGTTGTTCT 59.368 43.478 16.70 4.01 43.23 3.01
596 597 7.329438 CAGTTGTTCTGTAAAAGAATGCATG 57.671 36.000 0.00 0.00 46.53 4.06
597 598 6.919662 CAGTTGTTCTGTAAAAGAATGCATGT 59.080 34.615 0.00 0.00 46.53 3.21
598 599 7.436080 CAGTTGTTCTGTAAAAGAATGCATGTT 59.564 33.333 0.00 0.00 46.53 2.71
599 600 7.436080 AGTTGTTCTGTAAAAGAATGCATGTTG 59.564 33.333 0.00 0.00 46.53 3.33
600 601 7.036996 TGTTCTGTAAAAGAATGCATGTTGA 57.963 32.000 0.00 0.00 46.53 3.18
601 602 7.660112 TGTTCTGTAAAAGAATGCATGTTGAT 58.340 30.769 0.00 0.00 46.53 2.57
602 603 7.595875 TGTTCTGTAAAAGAATGCATGTTGATG 59.404 33.333 0.00 0.00 46.53 3.07
603 604 7.218228 TCTGTAAAAGAATGCATGTTGATGT 57.782 32.000 0.00 0.00 29.12 3.06
604 605 7.660112 TCTGTAAAAGAATGCATGTTGATGTT 58.340 30.769 0.00 0.00 29.12 2.71
605 606 8.143193 TCTGTAAAAGAATGCATGTTGATGTTT 58.857 29.630 0.00 0.00 29.12 2.83
606 607 8.296799 TGTAAAAGAATGCATGTTGATGTTTC 57.703 30.769 0.00 0.00 31.50 2.78
607 608 6.456447 AAAAGAATGCATGTTGATGTTTCG 57.544 33.333 0.00 0.00 32.97 3.46
608 609 4.771590 AGAATGCATGTTGATGTTTCGT 57.228 36.364 0.00 0.00 32.97 3.85
609 610 4.478699 AGAATGCATGTTGATGTTTCGTG 58.521 39.130 0.00 0.00 32.97 4.35
610 611 2.049077 TGCATGTTGATGTTTCGTGC 57.951 45.000 0.00 0.00 42.29 5.34
611 612 1.336125 TGCATGTTGATGTTTCGTGCA 59.664 42.857 7.10 7.10 46.92 4.57
612 613 2.223665 TGCATGTTGATGTTTCGTGCAA 60.224 40.909 8.49 0.00 46.39 4.08
613 614 2.988493 GCATGTTGATGTTTCGTGCAAT 59.012 40.909 0.00 0.00 41.78 3.56
614 615 3.181538 GCATGTTGATGTTTCGTGCAATG 60.182 43.478 0.00 0.00 41.78 2.82
615 616 2.392821 TGTTGATGTTTCGTGCAATGC 58.607 42.857 0.00 0.00 0.00 3.56
616 617 2.223665 TGTTGATGTTTCGTGCAATGCA 60.224 40.909 2.72 2.72 35.60 3.96
617 618 2.988493 GTTGATGTTTCGTGCAATGCAT 59.012 40.909 12.38 0.00 41.91 3.96
618 619 2.597520 TGATGTTTCGTGCAATGCATG 58.402 42.857 20.52 20.52 45.79 4.06
619 620 1.921887 GATGTTTCGTGCAATGCATGG 59.078 47.619 25.08 14.24 44.68 3.66
620 621 0.038435 TGTTTCGTGCAATGCATGGG 60.038 50.000 25.08 11.84 44.68 4.00
621 622 1.079956 TTTCGTGCAATGCATGGGC 60.080 52.632 25.08 14.84 44.68 5.36
632 633 3.106738 GCATGGGCATCTTGCTAGT 57.893 52.632 0.00 0.00 44.28 2.57
633 634 2.260844 GCATGGGCATCTTGCTAGTA 57.739 50.000 0.00 0.00 44.28 1.82
634 635 2.787994 GCATGGGCATCTTGCTAGTAT 58.212 47.619 0.00 0.00 44.28 2.12
635 636 3.152341 GCATGGGCATCTTGCTAGTATT 58.848 45.455 0.00 0.00 44.28 1.89
636 637 4.326826 GCATGGGCATCTTGCTAGTATTA 58.673 43.478 0.00 0.00 44.28 0.98
637 638 4.946157 GCATGGGCATCTTGCTAGTATTAT 59.054 41.667 0.00 0.00 44.28 1.28
638 639 6.115446 GCATGGGCATCTTGCTAGTATTATA 58.885 40.000 0.00 0.00 44.28 0.98
639 640 6.769822 GCATGGGCATCTTGCTAGTATTATAT 59.230 38.462 0.00 0.00 44.28 0.86
640 641 7.284034 GCATGGGCATCTTGCTAGTATTATATT 59.716 37.037 0.00 0.00 44.28 1.28
641 642 9.836864 CATGGGCATCTTGCTAGTATTATATTA 57.163 33.333 0.00 0.00 44.28 0.98
740 741 2.208640 TCTTACCCCACCCAGCCA 59.791 61.111 0.00 0.00 0.00 4.75
768 770 1.535462 CTCGTCGCAAAGGTGGAAAAT 59.465 47.619 0.00 0.00 0.00 1.82
772 774 3.666902 CGTCGCAAAGGTGGAAAATGTAG 60.667 47.826 0.00 0.00 0.00 2.74
1362 1398 2.274760 CTCTCCTACCCCGTCCGT 59.725 66.667 0.00 0.00 0.00 4.69
2007 2073 2.628657 GGCGGTACTCAATCTCACCTAT 59.371 50.000 0.00 0.00 0.00 2.57
2076 2168 3.394719 GTTCCACTTCCTGACTTGAGTC 58.605 50.000 4.20 4.20 44.97 3.36
2090 2182 0.937304 TGAGTCGTGCTTGCTTGTTC 59.063 50.000 0.00 0.00 0.00 3.18
2184 2276 4.283722 AGACAGGTAAACGAAACTCTCCAT 59.716 41.667 0.00 0.00 0.00 3.41
2210 2302 7.286546 TGTTTCTCCTTTTTGTGGTCAATATCA 59.713 33.333 0.00 0.00 33.32 2.15
2218 2310 4.717233 TGTGGTCAATATCACCAAATGC 57.283 40.909 7.86 0.00 45.74 3.56
2234 2326 0.899717 ATGCCAAAACCGCTCACCAT 60.900 50.000 0.00 0.00 0.00 3.55
2264 2358 5.653769 CCATACACTTCACTTCAATGGGAAT 59.346 40.000 0.00 0.00 34.32 3.01
2265 2359 6.153340 CCATACACTTCACTTCAATGGGAATT 59.847 38.462 0.00 0.00 34.32 2.17
2266 2360 5.712152 ACACTTCACTTCAATGGGAATTC 57.288 39.130 0.00 0.00 34.32 2.17
2267 2361 4.524328 ACACTTCACTTCAATGGGAATTCC 59.476 41.667 16.74 16.74 34.32 3.01
2303 2397 0.328258 CCACCAAACCCCCTACTCTG 59.672 60.000 0.00 0.00 0.00 3.35
2327 2440 4.635223 CTCAACTCCAAATGACTGAGTCA 58.365 43.478 18.64 18.64 46.90 3.41
2344 2457 2.026262 AGTCAAAATCCGTGCCATAGGT 60.026 45.455 0.00 0.00 0.00 3.08
2345 2458 2.097466 GTCAAAATCCGTGCCATAGGTG 59.903 50.000 0.00 0.00 0.00 4.00
2346 2459 2.091541 CAAAATCCGTGCCATAGGTGT 58.908 47.619 0.00 0.00 0.00 4.16
2347 2460 1.750193 AAATCCGTGCCATAGGTGTG 58.250 50.000 0.00 0.00 0.00 3.82
2348 2461 0.107214 AATCCGTGCCATAGGTGTGG 60.107 55.000 0.00 0.00 42.35 4.17
2359 2472 4.326826 CCATAGGTGTGGCAATAGTATGG 58.673 47.826 10.92 10.92 31.91 2.74
2386 2499 5.303333 ACCCTTGGTAACGAAATTTCAACAT 59.697 36.000 17.99 3.58 42.51 2.71
2581 3029 0.535102 CTGACCCAAACAGCGGAACT 60.535 55.000 0.00 0.00 0.00 3.01
3205 3653 2.159960 GCTAACTTCGAGAACTGTTGCG 60.160 50.000 0.00 1.76 0.00 4.85
3374 4043 1.076332 GTTTGGTTCAGATCCGACCG 58.924 55.000 5.57 0.00 36.22 4.79
3436 4105 4.399618 CGTGAGAAGATCTGGAGGTCTTTA 59.600 45.833 3.68 0.00 34.97 1.85
3480 4160 2.752903 GGCCTGTTTCGTTCATAACCAT 59.247 45.455 0.00 0.00 0.00 3.55
3486 4166 6.403200 CCTGTTTCGTTCATAACCATACCTTG 60.403 42.308 0.00 0.00 0.00 3.61
3603 4312 6.923199 AGTGGTTCCAATTTTGATGATCTT 57.077 33.333 0.00 0.00 0.00 2.40
3609 4318 7.761249 GGTTCCAATTTTGATGATCTTACCTTG 59.239 37.037 0.00 0.00 0.00 3.61
3612 4321 6.324819 CAATTTTGATGATCTTACCTTGCGT 58.675 36.000 0.00 0.00 0.00 5.24
3659 4368 2.390938 GGCAAACTTTGGCGAGTTTAC 58.609 47.619 15.53 11.45 45.44 2.01
3662 4371 4.464112 GCAAACTTTGGCGAGTTTACTAG 58.536 43.478 15.53 7.41 45.44 2.57
3663 4372 4.024302 GCAAACTTTGGCGAGTTTACTAGT 60.024 41.667 15.53 0.00 45.44 2.57
3665 4374 6.492254 CAAACTTTGGCGAGTTTACTAGTTT 58.508 36.000 15.53 5.77 45.44 2.66
3667 4376 7.417496 AACTTTGGCGAGTTTACTAGTTTAG 57.583 36.000 0.00 0.00 36.49 1.85
3668 4377 6.519382 ACTTTGGCGAGTTTACTAGTTTAGT 58.481 36.000 0.00 0.00 42.68 2.24
3671 4380 5.464168 TGGCGAGTTTACTAGTTTAGTCAC 58.536 41.667 0.00 0.00 40.14 3.67
3672 4381 5.009911 TGGCGAGTTTACTAGTTTAGTCACA 59.990 40.000 0.00 2.10 40.14 3.58
3673 4382 5.922544 GGCGAGTTTACTAGTTTAGTCACAA 59.077 40.000 0.00 0.00 40.14 3.33
3675 4384 7.201418 GGCGAGTTTACTAGTTTAGTCACAATC 60.201 40.741 0.00 0.00 40.14 2.67
3677 4386 7.811236 CGAGTTTACTAGTTTAGTCACAATCCA 59.189 37.037 0.00 0.00 40.14 3.41
3678 4387 9.485206 GAGTTTACTAGTTTAGTCACAATCCAA 57.515 33.333 0.00 0.00 40.14 3.53
3679 4388 9.841295 AGTTTACTAGTTTAGTCACAATCCAAA 57.159 29.630 0.00 0.00 40.14 3.28
3680 4389 9.874215 GTTTACTAGTTTAGTCACAATCCAAAC 57.126 33.333 0.00 0.00 40.14 2.93
3683 4392 6.710744 ACTAGTTTAGTCACAATCCAAACAGG 59.289 38.462 0.00 0.00 32.47 4.00
3684 4393 4.278419 AGTTTAGTCACAATCCAAACAGGC 59.722 41.667 0.00 0.00 37.29 4.85
3685 4394 1.620822 AGTCACAATCCAAACAGGCC 58.379 50.000 0.00 0.00 37.29 5.19
3722 5468 0.314618 TGCAAGCCGTAACTCGTACA 59.685 50.000 0.00 0.00 37.94 2.90
3737 5483 2.737783 TCGTACATGGCCAAAAACTACG 59.262 45.455 10.96 15.90 0.00 3.51
3743 5489 0.442699 GGCCAAAAACTACGAGCGAG 59.557 55.000 0.00 0.00 0.00 5.03
3756 5502 1.542544 GAGCGAGTTGAAATGCATGC 58.457 50.000 11.82 11.82 0.00 4.06
3870 5658 9.729023 TCATTGCTTATAATTGATACGTTTTGG 57.271 29.630 0.00 0.00 0.00 3.28
4107 5917 4.033009 TGGATGGCTTCTGATAGTTCTCA 58.967 43.478 0.07 0.00 0.00 3.27
4108 5918 4.471025 TGGATGGCTTCTGATAGTTCTCAA 59.529 41.667 0.07 0.00 0.00 3.02
4188 6001 4.024556 GCACTGCACATGTACAAGGATATC 60.025 45.833 0.00 0.00 0.00 1.63
4247 6066 0.166814 GTTCAGGCGTGTGATGCTTC 59.833 55.000 6.26 0.00 0.00 3.86
4264 6083 4.876125 TGCTTCTGCTATACTAGATGCAC 58.124 43.478 13.66 0.00 44.23 4.57
4280 6099 6.170675 AGATGCACGTTTAAGATTTCTGAC 57.829 37.500 0.00 0.00 0.00 3.51
4383 6202 2.107366 TCAGTCGACATGGCTATTGGA 58.893 47.619 19.50 0.00 0.00 3.53
4404 6225 8.655651 TTGGATCAGGTTTGTTTTATGTTTTC 57.344 30.769 0.00 0.00 0.00 2.29
4421 6242 7.798596 ATGTTTTCTATCTGCCTATGTTCAG 57.201 36.000 0.00 0.00 0.00 3.02
4666 6487 6.708502 TCTTAAGACCGATGAACATGACAAAA 59.291 34.615 0.00 0.00 0.00 2.44
4667 6488 5.362556 AAGACCGATGAACATGACAAAAG 57.637 39.130 0.00 0.00 0.00 2.27
4669 6490 4.821805 AGACCGATGAACATGACAAAAGTT 59.178 37.500 0.00 0.00 0.00 2.66
4670 6491 4.858935 ACCGATGAACATGACAAAAGTTG 58.141 39.130 0.00 0.00 0.00 3.16
4684 6505 4.082125 CAAAAGTTGGGAGTTATGGCTCT 58.918 43.478 0.00 0.00 35.89 4.09
4725 6579 5.741011 CATGCAGGGGTCTTTACTAGTTTA 58.259 41.667 0.00 0.00 0.00 2.01
4742 6596 8.273780 ACTAGTTTATTCTTCTCATTGCTTGG 57.726 34.615 0.00 0.00 0.00 3.61
4753 6607 7.712639 TCTTCTCATTGCTTGGTTGATAGTATC 59.287 37.037 2.97 2.97 0.00 2.24
4788 6642 9.454859 CTTTTATAGGGAAAACTCAGACTTGAT 57.545 33.333 0.00 0.00 31.68 2.57
4805 6659 9.684448 CAGACTTGATCGCTAAGAATATAAGAA 57.316 33.333 0.00 0.00 0.00 2.52
5150 7059 5.710099 ACTTGTCCCGAATACAAATGAATGT 59.290 36.000 0.00 0.00 36.46 2.71
5173 7082 7.411274 TGTAAAAATGAGTTTGTTACTGTCCG 58.589 34.615 0.00 0.00 37.17 4.79
5369 7279 3.599343 TCGAGAATCATGTTGTGAAGGG 58.401 45.455 0.00 0.00 40.97 3.95
5517 7427 1.531149 CACCTTCGCGAACTCACATTT 59.469 47.619 19.38 0.00 0.00 2.32
5714 7626 7.549615 ACACATTGATATCATTGAGAGTGTG 57.450 36.000 26.53 21.11 39.15 3.82
5763 7676 3.901222 TCCATAAATCCTCGGATGCTACA 59.099 43.478 0.00 0.00 34.70 2.74
5771 7684 2.693591 CCTCGGATGCTACAACCTCTAA 59.306 50.000 0.00 0.00 0.00 2.10
5908 7821 5.802465 TCCTCTCATTAGATGCCATCAATC 58.198 41.667 7.56 0.00 0.00 2.67
5916 7829 8.212995 TCATTAGATGCCATCAATCTCTTTGTA 58.787 33.333 7.56 0.00 36.65 2.41
5947 7860 3.980583 GGTGCCCGAAGATATTCGA 57.019 52.632 23.23 0.96 46.52 3.71
5978 7891 2.086869 ACGGATGATCACTTTGGCAAG 58.913 47.619 0.00 0.00 35.92 4.01
6029 7944 2.930040 CACCAACGCGAAGATACTCATT 59.070 45.455 15.93 0.00 0.00 2.57
6116 8033 0.324645 AATCCCTTCAAGCCCGCAAT 60.325 50.000 0.00 0.00 0.00 3.56
6196 8113 3.279875 GGGATCGGTGCATTCGGC 61.280 66.667 11.50 5.49 45.13 5.54
6205 8122 4.301505 GCATTCGGCACCTTCTCA 57.698 55.556 0.00 0.00 43.97 3.27
6235 8156 2.104967 TGGATACGTTGGATTCTCCGT 58.895 47.619 0.00 0.00 38.66 4.69
6626 8777 3.948719 GGAACCTGTGGTGGGCGA 61.949 66.667 0.00 0.00 35.34 5.54
6842 8994 1.419922 CGACCCGCATTTTGACGAG 59.580 57.895 0.00 0.00 0.00 4.18
6918 9070 3.048600 CTCCAACAGATCCCCAATCCTA 58.951 50.000 0.00 0.00 34.67 2.94
6946 9433 8.217799 CCCATTTCTATGTATTTAGGGAGTTGA 58.782 37.037 0.00 0.00 35.81 3.18
7032 10809 4.522297 TCATCCCAACTCCCCCAATATAT 58.478 43.478 0.00 0.00 0.00 0.86
7057 10834 1.821136 GGAGTTGCCTCTTTCCCAATG 59.179 52.381 0.00 0.00 37.86 2.82
7090 10868 0.943835 TGTCGAACACAGCATCACCG 60.944 55.000 0.00 0.00 0.00 4.94
7114 10892 0.387622 CGTTTCTCCGCCGTTGTCTA 60.388 55.000 0.00 0.00 0.00 2.59
7177 10957 0.482887 GGGGATGAGGTTATTGGGGG 59.517 60.000 0.00 0.00 0.00 5.40
7221 11001 9.889128 CCCCAATAATCTGAAAATTGTTATTGT 57.111 29.630 13.73 0.00 39.40 2.71
7239 11019 1.143838 TGGATCGGTTGGAGATGCG 59.856 57.895 0.00 0.00 38.96 4.73
7250 11030 1.162800 GGAGATGCGGTTGGAGATGC 61.163 60.000 0.00 0.00 0.00 3.91
7312 11094 6.560003 TCAAGTCTACCCATGACATTACAT 57.440 37.500 0.00 0.00 36.94 2.29
7370 11153 2.008242 ATTTGTTGTGCCAGCCCTAA 57.992 45.000 0.00 0.00 0.00 2.69
7386 12780 3.005897 GCCCTAAGATGACAAGCTCGATA 59.994 47.826 0.00 0.00 0.00 2.92
7415 12809 0.901124 GTCTCCATGTGCTCCTCTGT 59.099 55.000 0.00 0.00 0.00 3.41
7424 12830 2.906389 TGTGCTCCTCTGTCCACTATTT 59.094 45.455 0.00 0.00 0.00 1.40
7430 12836 5.755861 GCTCCTCTGTCCACTATTTACATTC 59.244 44.000 0.00 0.00 0.00 2.67
7467 12873 2.084546 GACAGGAACTTGTATGTGCCC 58.915 52.381 0.00 0.00 36.27 5.36
7500 12906 3.767131 AGGCACAACACAAAAAGTTAGGT 59.233 39.130 0.00 0.00 0.00 3.08
7543 12965 2.750948 ACGTGTGAAGCGTACATCTTT 58.249 42.857 0.00 0.00 41.06 2.52
7544 12966 2.729882 ACGTGTGAAGCGTACATCTTTC 59.270 45.455 0.00 0.00 41.06 2.62
7545 12967 2.987149 CGTGTGAAGCGTACATCTTTCT 59.013 45.455 0.00 0.00 0.00 2.52
7547 12969 4.084537 CGTGTGAAGCGTACATCTTTCTTT 60.085 41.667 0.00 0.00 0.00 2.52
7549 12971 6.199393 GTGTGAAGCGTACATCTTTCTTTTT 58.801 36.000 0.00 0.00 0.00 1.94
7578 13000 7.851822 TTTTGAATTTTCTGAAGCGTACATC 57.148 32.000 0.00 0.00 0.00 3.06
7579 13001 6.801539 TTGAATTTTCTGAAGCGTACATCT 57.198 33.333 0.00 0.00 0.00 2.90
7580 13002 6.801539 TGAATTTTCTGAAGCGTACATCTT 57.198 33.333 0.00 0.00 0.00 2.40
7581 13003 6.602179 TGAATTTTCTGAAGCGTACATCTTG 58.398 36.000 2.49 0.00 0.00 3.02
7582 13004 6.426633 TGAATTTTCTGAAGCGTACATCTTGA 59.573 34.615 2.49 0.00 0.00 3.02
7583 13005 5.591643 TTTTCTGAAGCGTACATCTTGAC 57.408 39.130 2.49 0.00 0.00 3.18
7584 13006 3.232213 TCTGAAGCGTACATCTTGACC 57.768 47.619 2.49 0.00 0.00 4.02
7585 13007 2.560981 TCTGAAGCGTACATCTTGACCA 59.439 45.455 2.49 0.00 0.00 4.02
7624 13110 5.229469 GTGTCTGTCGTGTATACTTGCATAC 59.771 44.000 4.17 2.68 32.91 2.39
7745 13231 6.043411 CCCTTCAACTACAGCTCTTATGTAC 58.957 44.000 0.00 0.00 32.02 2.90
7746 13232 6.351033 CCCTTCAACTACAGCTCTTATGTACA 60.351 42.308 0.00 0.00 32.02 2.90
7927 13413 4.353777 AGAGTACTAGGAATGCCTGTCAA 58.646 43.478 0.88 0.00 46.45 3.18
7953 13439 1.141881 CCCCTCCACAAGTCGATCG 59.858 63.158 9.36 9.36 0.00 3.69
8019 13520 4.644685 AGGTATTGCTGTCTGTTGTTGTTT 59.355 37.500 0.00 0.00 0.00 2.83
8020 13521 5.127031 AGGTATTGCTGTCTGTTGTTGTTTT 59.873 36.000 0.00 0.00 0.00 2.43
8050 13601 7.266905 AGTTATAACCCCTTGCTTTCTAAGA 57.733 36.000 12.05 0.00 0.00 2.10
8096 13647 2.983296 ACATGGAAATTTTGGTCCCCA 58.017 42.857 0.00 0.00 32.48 4.96
8098 13649 3.519107 ACATGGAAATTTTGGTCCCCATC 59.481 43.478 0.00 0.00 32.57 3.51
8101 13652 1.548269 GAAATTTTGGTCCCCATCGCA 59.452 47.619 0.00 0.00 31.53 5.10
8217 13768 4.277423 GGTACAAACACATGGTAAGCTGTT 59.723 41.667 0.00 0.00 0.00 3.16
8218 13769 4.305989 ACAAACACATGGTAAGCTGTTG 57.694 40.909 0.00 0.00 0.00 3.33
8219 13770 3.699038 ACAAACACATGGTAAGCTGTTGT 59.301 39.130 0.00 0.00 0.00 3.32
8265 13825 5.163395 TGGTTCATTACATACCATCGTGCTA 60.163 40.000 0.00 0.00 37.04 3.49
8267 13827 6.259167 GGTTCATTACATACCATCGTGCTAAA 59.741 38.462 0.00 0.00 32.12 1.85
8376 13936 4.584325 AGACAGCAAAGAAAGCAAATACCA 59.416 37.500 0.00 0.00 0.00 3.25
8600 14160 6.640518 TGTAAAGTTGTCCAGAGATGGTATC 58.359 40.000 0.00 0.00 0.00 2.24
8847 14427 1.342174 GTAGACGTTGTTGAGGGTGGA 59.658 52.381 0.00 0.00 0.00 4.02
8848 14428 0.834612 AGACGTTGTTGAGGGTGGAA 59.165 50.000 0.00 0.00 0.00 3.53
9097 14677 1.275291 TCCGTCCACTGGAGATTGAAC 59.725 52.381 0.00 0.00 29.39 3.18
9142 14809 0.536724 TAGTGGCTGATGCGTGATGT 59.463 50.000 0.00 0.00 40.82 3.06
9187 14854 3.052082 GATGCGGATGATGCGGGG 61.052 66.667 8.71 0.00 34.24 5.73
9188 14855 3.535629 GATGCGGATGATGCGGGGA 62.536 63.158 8.71 0.00 34.24 4.81
9189 14856 3.541950 ATGCGGATGATGCGGGGAG 62.542 63.158 8.71 0.00 34.24 4.30
9190 14857 4.241555 GCGGATGATGCGGGGAGT 62.242 66.667 8.71 0.00 0.00 3.85
9459 17599 0.978907 TCATGTTCTGGCTGAGCAGA 59.021 50.000 15.34 4.58 39.21 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.560068 CGTGTGGCTTCTGATTAATACCC 59.440 47.826 0.00 0.00 0.00 3.69
2 3 4.439057 TCGTGTGGCTTCTGATTAATACC 58.561 43.478 0.00 0.00 0.00 2.73
4 5 5.580691 CACTTCGTGTGGCTTCTGATTAATA 59.419 40.000 0.00 0.00 42.68 0.98
5 6 4.393062 CACTTCGTGTGGCTTCTGATTAAT 59.607 41.667 0.00 0.00 42.68 1.40
6 7 3.745975 CACTTCGTGTGGCTTCTGATTAA 59.254 43.478 3.97 0.00 42.68 1.40
7 8 3.325870 CACTTCGTGTGGCTTCTGATTA 58.674 45.455 3.97 0.00 42.68 1.75
10 11 3.289128 CACTTCGTGTGGCTTCTGA 57.711 52.632 3.97 0.00 42.68 3.27
18 19 4.511454 CCATATTGTATCCCACTTCGTGTG 59.489 45.833 4.75 4.75 45.80 3.82
19 20 4.407621 TCCATATTGTATCCCACTTCGTGT 59.592 41.667 0.00 0.00 0.00 4.49
20 21 4.956085 TCCATATTGTATCCCACTTCGTG 58.044 43.478 0.00 0.00 0.00 4.35
21 22 5.566826 CGATCCATATTGTATCCCACTTCGT 60.567 44.000 0.00 0.00 0.00 3.85
22 23 4.864806 CGATCCATATTGTATCCCACTTCG 59.135 45.833 0.00 0.00 0.00 3.79
23 24 5.639506 CACGATCCATATTGTATCCCACTTC 59.360 44.000 0.00 0.00 0.00 3.01
24 25 5.513094 CCACGATCCATATTGTATCCCACTT 60.513 44.000 0.00 0.00 0.00 3.16
25 26 4.020218 CCACGATCCATATTGTATCCCACT 60.020 45.833 0.00 0.00 0.00 4.00
26 27 4.253685 CCACGATCCATATTGTATCCCAC 58.746 47.826 0.00 0.00 0.00 4.61
27 28 3.263170 CCCACGATCCATATTGTATCCCA 59.737 47.826 0.00 0.00 0.00 4.37
28 29 3.370527 CCCCACGATCCATATTGTATCCC 60.371 52.174 0.00 0.00 0.00 3.85
29 30 3.263425 ACCCCACGATCCATATTGTATCC 59.737 47.826 0.00 0.00 0.00 2.59
30 31 4.020573 TCACCCCACGATCCATATTGTATC 60.021 45.833 0.00 0.00 0.00 2.24
31 32 3.907474 TCACCCCACGATCCATATTGTAT 59.093 43.478 0.00 0.00 0.00 2.29
32 33 3.310193 TCACCCCACGATCCATATTGTA 58.690 45.455 0.00 0.00 0.00 2.41
33 34 2.123589 TCACCCCACGATCCATATTGT 58.876 47.619 0.00 0.00 0.00 2.71
34 35 2.928801 TCACCCCACGATCCATATTG 57.071 50.000 0.00 0.00 0.00 1.90
35 36 3.551846 GTTTCACCCCACGATCCATATT 58.448 45.455 0.00 0.00 0.00 1.28
36 37 2.158667 GGTTTCACCCCACGATCCATAT 60.159 50.000 0.00 0.00 30.04 1.78
37 38 1.210967 GGTTTCACCCCACGATCCATA 59.789 52.381 0.00 0.00 30.04 2.74
38 39 0.034477 GGTTTCACCCCACGATCCAT 60.034 55.000 0.00 0.00 30.04 3.41
39 40 1.377229 GGTTTCACCCCACGATCCA 59.623 57.895 0.00 0.00 30.04 3.41
40 41 0.676782 CTGGTTTCACCCCACGATCC 60.677 60.000 0.00 0.00 37.50 3.36
41 42 0.323629 TCTGGTTTCACCCCACGATC 59.676 55.000 0.00 0.00 37.50 3.69
42 43 0.991920 ATCTGGTTTCACCCCACGAT 59.008 50.000 0.00 0.00 37.50 3.73
43 44 1.646912 TATCTGGTTTCACCCCACGA 58.353 50.000 0.00 0.00 37.50 4.35
44 45 2.288666 CATATCTGGTTTCACCCCACG 58.711 52.381 0.00 0.00 37.50 4.94
45 46 2.654863 CCATATCTGGTTTCACCCCAC 58.345 52.381 0.00 0.00 37.50 4.61
46 47 1.064017 GCCATATCTGGTTTCACCCCA 60.064 52.381 0.00 0.00 45.10 4.96
47 48 1.692411 GCCATATCTGGTTTCACCCC 58.308 55.000 0.00 0.00 45.10 4.95
48 49 1.308998 CGCCATATCTGGTTTCACCC 58.691 55.000 0.00 0.00 45.10 4.61
49 50 0.663153 GCGCCATATCTGGTTTCACC 59.337 55.000 0.00 0.00 45.10 4.02
50 51 0.663153 GGCGCCATATCTGGTTTCAC 59.337 55.000 24.80 0.00 45.10 3.18
51 52 0.465460 GGGCGCCATATCTGGTTTCA 60.465 55.000 30.85 0.00 45.10 2.69
52 53 1.172812 GGGGCGCCATATCTGGTTTC 61.173 60.000 30.85 5.46 45.10 2.78
53 54 1.152756 GGGGCGCCATATCTGGTTT 60.153 57.895 30.85 0.00 45.10 3.27
54 55 2.056906 GAGGGGCGCCATATCTGGTT 62.057 60.000 30.85 1.41 45.10 3.67
55 56 2.448542 AGGGGCGCCATATCTGGT 60.449 61.111 30.85 0.00 45.10 4.00
56 57 1.845627 ATGAGGGGCGCCATATCTGG 61.846 60.000 30.85 0.00 46.17 3.86
57 58 0.392193 GATGAGGGGCGCCATATCTG 60.392 60.000 30.85 0.00 0.00 2.90
58 59 1.557269 GGATGAGGGGCGCCATATCT 61.557 60.000 30.85 19.09 0.00 1.98
59 60 1.078143 GGATGAGGGGCGCCATATC 60.078 63.158 30.85 22.81 0.00 1.63
60 61 1.845627 CTGGATGAGGGGCGCCATAT 61.846 60.000 30.85 16.02 0.00 1.78
61 62 2.447572 TGGATGAGGGGCGCCATA 60.448 61.111 30.85 11.40 0.00 2.74
62 63 3.882326 CTGGATGAGGGGCGCCAT 61.882 66.667 30.85 17.07 0.00 4.40
64 65 4.247380 CTCTGGATGAGGGGCGCC 62.247 72.222 21.18 21.18 39.08 6.53
65 66 2.049627 ATTCTCTGGATGAGGGGCGC 62.050 60.000 0.00 0.00 42.86 6.53
66 67 0.471617 AATTCTCTGGATGAGGGGCG 59.528 55.000 0.00 0.00 42.86 6.13
67 68 2.092212 TCAAATTCTCTGGATGAGGGGC 60.092 50.000 0.00 0.00 42.86 5.80
68 69 3.939740 TCAAATTCTCTGGATGAGGGG 57.060 47.619 0.00 0.00 42.86 4.79
69 70 5.713861 AGTTTTCAAATTCTCTGGATGAGGG 59.286 40.000 0.00 0.00 42.86 4.30
70 71 6.830873 AGTTTTCAAATTCTCTGGATGAGG 57.169 37.500 0.00 0.00 42.86 3.86
71 72 7.967303 GCTAAGTTTTCAAATTCTCTGGATGAG 59.033 37.037 0.00 0.00 43.96 2.90
72 73 7.667219 AGCTAAGTTTTCAAATTCTCTGGATGA 59.333 33.333 0.00 0.00 0.00 2.92
73 74 7.824672 AGCTAAGTTTTCAAATTCTCTGGATG 58.175 34.615 0.00 0.00 0.00 3.51
74 75 9.520515 TTAGCTAAGTTTTCAAATTCTCTGGAT 57.479 29.630 0.86 0.00 0.00 3.41
75 76 8.918202 TTAGCTAAGTTTTCAAATTCTCTGGA 57.082 30.769 0.86 0.00 0.00 3.86
76 77 9.399403 GTTTAGCTAAGTTTTCAAATTCTCTGG 57.601 33.333 6.24 0.00 0.00 3.86
97 98 8.846211 AGAAGCAGATAGTCTAGCTAAGTTTAG 58.154 37.037 0.00 0.00 32.48 1.85
98 99 8.754991 AGAAGCAGATAGTCTAGCTAAGTTTA 57.245 34.615 0.00 0.00 32.48 2.01
99 100 7.654022 AGAAGCAGATAGTCTAGCTAAGTTT 57.346 36.000 0.00 0.00 32.48 2.66
100 101 8.934023 ATAGAAGCAGATAGTCTAGCTAAGTT 57.066 34.615 0.00 0.00 32.48 2.66
105 106 9.120538 GCTAATATAGAAGCAGATAGTCTAGCT 57.879 37.037 0.00 0.00 38.63 3.32
106 107 8.349983 GGCTAATATAGAAGCAGATAGTCTAGC 58.650 40.741 10.35 0.00 40.61 3.42
107 108 8.556194 CGGCTAATATAGAAGCAGATAGTCTAG 58.444 40.741 10.35 0.00 40.61 2.43
108 109 7.499563 CCGGCTAATATAGAAGCAGATAGTCTA 59.500 40.741 10.35 0.00 40.61 2.59
109 110 6.320164 CCGGCTAATATAGAAGCAGATAGTCT 59.680 42.308 10.35 0.00 40.61 3.24
110 111 6.095720 ACCGGCTAATATAGAAGCAGATAGTC 59.904 42.308 0.00 0.00 40.61 2.59
111 112 5.952947 ACCGGCTAATATAGAAGCAGATAGT 59.047 40.000 0.00 0.00 40.61 2.12
112 113 6.320164 AGACCGGCTAATATAGAAGCAGATAG 59.680 42.308 0.00 0.00 40.61 2.08
113 114 6.188407 AGACCGGCTAATATAGAAGCAGATA 58.812 40.000 0.00 0.00 40.61 1.98
114 115 5.020132 AGACCGGCTAATATAGAAGCAGAT 58.980 41.667 0.00 0.00 40.61 2.90
115 116 4.408276 AGACCGGCTAATATAGAAGCAGA 58.592 43.478 0.00 0.00 40.61 4.26
116 117 4.792521 AGACCGGCTAATATAGAAGCAG 57.207 45.455 0.00 6.79 40.61 4.24
117 118 4.021368 GGAAGACCGGCTAATATAGAAGCA 60.021 45.833 0.00 0.00 40.61 3.91
118 119 4.221041 AGGAAGACCGGCTAATATAGAAGC 59.779 45.833 0.00 1.33 41.83 3.86
119 120 5.986501 AGGAAGACCGGCTAATATAGAAG 57.013 43.478 0.00 0.00 41.83 2.85
120 121 5.836898 TGAAGGAAGACCGGCTAATATAGAA 59.163 40.000 0.00 0.00 41.83 2.10
121 122 5.391256 TGAAGGAAGACCGGCTAATATAGA 58.609 41.667 0.00 0.00 41.83 1.98
122 123 5.723672 TGAAGGAAGACCGGCTAATATAG 57.276 43.478 0.00 0.00 41.83 1.31
123 124 6.488769 TTTGAAGGAAGACCGGCTAATATA 57.511 37.500 0.00 0.00 41.83 0.86
124 125 5.367945 TTTGAAGGAAGACCGGCTAATAT 57.632 39.130 0.00 0.00 41.83 1.28
125 126 4.829872 TTTGAAGGAAGACCGGCTAATA 57.170 40.909 0.00 0.00 41.83 0.98
126 127 3.713826 TTTGAAGGAAGACCGGCTAAT 57.286 42.857 0.00 0.00 41.83 1.73
127 128 3.181448 ACTTTTGAAGGAAGACCGGCTAA 60.181 43.478 0.00 0.00 41.83 3.09
128 129 2.370849 ACTTTTGAAGGAAGACCGGCTA 59.629 45.455 0.00 0.00 41.83 3.93
129 130 1.143073 ACTTTTGAAGGAAGACCGGCT 59.857 47.619 0.00 0.00 41.83 5.52
130 131 1.605753 ACTTTTGAAGGAAGACCGGC 58.394 50.000 0.00 0.00 41.83 6.13
131 132 5.959618 ATTTACTTTTGAAGGAAGACCGG 57.040 39.130 0.00 0.00 41.83 5.28
132 133 6.143919 GCAAATTTACTTTTGAAGGAAGACCG 59.856 38.462 1.33 0.00 38.58 4.79
133 134 6.983890 TGCAAATTTACTTTTGAAGGAAGACC 59.016 34.615 1.33 0.00 38.58 3.85
134 135 8.065557 CTGCAAATTTACTTTTGAAGGAAGAC 57.934 34.615 1.33 0.00 38.22 3.01
143 144 9.662545 CCAATTTTACCTGCAAATTTACTTTTG 57.337 29.630 0.00 0.00 39.16 2.44
144 145 9.620259 TCCAATTTTACCTGCAAATTTACTTTT 57.380 25.926 0.00 0.00 32.57 2.27
145 146 9.051679 GTCCAATTTTACCTGCAAATTTACTTT 57.948 29.630 0.00 0.00 32.57 2.66
146 147 7.383843 CGTCCAATTTTACCTGCAAATTTACTT 59.616 33.333 0.00 0.00 32.57 2.24
147 148 6.866248 CGTCCAATTTTACCTGCAAATTTACT 59.134 34.615 0.00 0.00 32.57 2.24
148 149 6.400621 GCGTCCAATTTTACCTGCAAATTTAC 60.401 38.462 0.00 0.00 32.57 2.01
149 150 5.635700 GCGTCCAATTTTACCTGCAAATTTA 59.364 36.000 0.00 0.00 32.57 1.40
150 151 4.450757 GCGTCCAATTTTACCTGCAAATTT 59.549 37.500 0.00 0.00 32.57 1.82
151 152 3.993736 GCGTCCAATTTTACCTGCAAATT 59.006 39.130 0.00 0.00 34.75 1.82
152 153 3.258123 AGCGTCCAATTTTACCTGCAAAT 59.742 39.130 0.00 0.00 0.00 2.32
153 154 2.625790 AGCGTCCAATTTTACCTGCAAA 59.374 40.909 0.00 0.00 0.00 3.68
154 155 2.227865 GAGCGTCCAATTTTACCTGCAA 59.772 45.455 0.00 0.00 0.00 4.08
155 156 1.810151 GAGCGTCCAATTTTACCTGCA 59.190 47.619 0.00 0.00 0.00 4.41
156 157 1.202031 CGAGCGTCCAATTTTACCTGC 60.202 52.381 0.00 0.00 0.00 4.85
157 158 1.202031 GCGAGCGTCCAATTTTACCTG 60.202 52.381 0.00 0.00 0.00 4.00
158 159 1.084289 GCGAGCGTCCAATTTTACCT 58.916 50.000 0.00 0.00 0.00 3.08
159 160 1.084289 AGCGAGCGTCCAATTTTACC 58.916 50.000 0.00 0.00 0.00 2.85
160 161 1.790481 GCAGCGAGCGTCCAATTTTAC 60.790 52.381 0.00 0.00 0.00 2.01
161 162 0.446222 GCAGCGAGCGTCCAATTTTA 59.554 50.000 0.00 0.00 0.00 1.52
162 163 1.210155 GCAGCGAGCGTCCAATTTT 59.790 52.632 0.00 0.00 0.00 1.82
163 164 2.870372 GCAGCGAGCGTCCAATTT 59.130 55.556 0.00 0.00 0.00 1.82
172 173 1.886777 GGGAGATCAAGCAGCGAGC 60.887 63.158 0.00 0.00 46.19 5.03
173 174 0.530211 CAGGGAGATCAAGCAGCGAG 60.530 60.000 0.00 0.00 0.00 5.03
174 175 0.972471 TCAGGGAGATCAAGCAGCGA 60.972 55.000 0.00 0.00 0.00 4.93
175 176 0.530211 CTCAGGGAGATCAAGCAGCG 60.530 60.000 0.00 0.00 0.00 5.18
176 177 0.829333 TCTCAGGGAGATCAAGCAGC 59.171 55.000 0.00 0.00 33.35 5.25
177 178 3.842007 ATTCTCAGGGAGATCAAGCAG 57.158 47.619 0.00 0.00 38.56 4.24
178 179 4.293494 AGTATTCTCAGGGAGATCAAGCA 58.707 43.478 0.00 0.00 38.56 3.91
179 180 4.262420 GGAGTATTCTCAGGGAGATCAAGC 60.262 50.000 1.51 0.00 42.05 4.01
180 181 4.283212 GGGAGTATTCTCAGGGAGATCAAG 59.717 50.000 1.51 0.00 42.05 3.02
181 182 4.227197 GGGAGTATTCTCAGGGAGATCAA 58.773 47.826 1.51 0.00 42.05 2.57
182 183 3.207549 TGGGAGTATTCTCAGGGAGATCA 59.792 47.826 1.51 0.00 42.05 2.92
183 184 3.850752 TGGGAGTATTCTCAGGGAGATC 58.149 50.000 1.51 0.00 42.05 2.75
184 185 4.500389 ATGGGAGTATTCTCAGGGAGAT 57.500 45.455 1.51 0.00 37.20 2.75
185 186 4.754475 GCTATGGGAGTATTCTCAGGGAGA 60.754 50.000 1.51 0.00 37.20 3.71
186 187 3.513515 GCTATGGGAGTATTCTCAGGGAG 59.486 52.174 1.51 0.00 37.20 4.30
187 188 3.142977 AGCTATGGGAGTATTCTCAGGGA 59.857 47.826 1.51 0.00 37.20 4.20
188 189 3.515562 AGCTATGGGAGTATTCTCAGGG 58.484 50.000 1.51 0.00 37.20 4.45
189 190 5.540337 TGTTAGCTATGGGAGTATTCTCAGG 59.460 44.000 0.00 0.00 37.20 3.86
190 191 6.656632 TGTTAGCTATGGGAGTATTCTCAG 57.343 41.667 0.00 0.00 37.20 3.35
191 192 7.618019 AATGTTAGCTATGGGAGTATTCTCA 57.382 36.000 0.00 0.00 42.05 3.27
192 193 8.371699 AGAAATGTTAGCTATGGGAGTATTCTC 58.628 37.037 0.00 0.00 39.76 2.87
193 194 8.268878 AGAAATGTTAGCTATGGGAGTATTCT 57.731 34.615 0.00 0.00 0.00 2.40
197 198 9.381038 AGAATAGAAATGTTAGCTATGGGAGTA 57.619 33.333 0.00 0.00 0.00 2.59
198 199 8.268878 AGAATAGAAATGTTAGCTATGGGAGT 57.731 34.615 0.00 0.00 0.00 3.85
231 232 9.920946 AGATACACCATCATTACCAACTTAATT 57.079 29.630 0.00 0.00 35.96 1.40
232 233 9.342308 CAGATACACCATCATTACCAACTTAAT 57.658 33.333 0.00 0.00 35.96 1.40
233 234 8.325787 ACAGATACACCATCATTACCAACTTAA 58.674 33.333 0.00 0.00 35.96 1.85
234 235 7.857456 ACAGATACACCATCATTACCAACTTA 58.143 34.615 0.00 0.00 35.96 2.24
235 236 6.721318 ACAGATACACCATCATTACCAACTT 58.279 36.000 0.00 0.00 35.96 2.66
236 237 6.070251 TGACAGATACACCATCATTACCAACT 60.070 38.462 0.00 0.00 35.96 3.16
237 238 6.112734 TGACAGATACACCATCATTACCAAC 58.887 40.000 0.00 0.00 35.96 3.77
238 239 6.306643 TGACAGATACACCATCATTACCAA 57.693 37.500 0.00 0.00 35.96 3.67
239 240 5.948742 TGACAGATACACCATCATTACCA 57.051 39.130 0.00 0.00 35.96 3.25
240 241 6.763355 AGATGACAGATACACCATCATTACC 58.237 40.000 0.00 0.00 38.22 2.85
241 242 7.307632 GCAAGATGACAGATACACCATCATTAC 60.308 40.741 0.00 0.00 38.22 1.89
242 243 6.707608 GCAAGATGACAGATACACCATCATTA 59.292 38.462 0.00 0.00 38.22 1.90
243 244 5.530171 GCAAGATGACAGATACACCATCATT 59.470 40.000 0.00 0.00 38.22 2.57
244 245 5.061853 GCAAGATGACAGATACACCATCAT 58.938 41.667 0.00 0.00 38.22 2.45
245 246 4.080975 TGCAAGATGACAGATACACCATCA 60.081 41.667 0.00 0.00 38.22 3.07
246 247 4.445453 TGCAAGATGACAGATACACCATC 58.555 43.478 0.00 0.00 36.56 3.51
247 248 4.492494 TGCAAGATGACAGATACACCAT 57.508 40.909 0.00 0.00 0.00 3.55
248 249 3.979101 TGCAAGATGACAGATACACCA 57.021 42.857 0.00 0.00 0.00 4.17
249 250 8.090831 TCTATATTGCAAGATGACAGATACACC 58.909 37.037 16.68 0.00 0.00 4.16
250 251 8.920665 GTCTATATTGCAAGATGACAGATACAC 58.079 37.037 16.68 0.00 0.00 2.90
251 252 8.090831 GGTCTATATTGCAAGATGACAGATACA 58.909 37.037 24.57 4.03 0.00 2.29
252 253 7.274468 CGGTCTATATTGCAAGATGACAGATAC 59.726 40.741 24.57 14.15 0.00 2.24
253 254 7.039714 ACGGTCTATATTGCAAGATGACAGATA 60.040 37.037 26.34 7.93 0.00 1.98
254 255 6.162079 CGGTCTATATTGCAAGATGACAGAT 58.838 40.000 24.57 4.44 0.00 2.90
255 256 5.069119 ACGGTCTATATTGCAAGATGACAGA 59.931 40.000 26.34 16.94 0.00 3.41
256 257 5.292765 ACGGTCTATATTGCAAGATGACAG 58.707 41.667 24.57 23.31 0.00 3.51
257 258 5.276461 ACGGTCTATATTGCAAGATGACA 57.724 39.130 24.57 6.83 0.00 3.58
258 259 4.686554 GGACGGTCTATATTGCAAGATGAC 59.313 45.833 16.68 18.45 0.00 3.06
259 260 4.558697 CGGACGGTCTATATTGCAAGATGA 60.559 45.833 16.68 9.06 0.00 2.92
260 261 3.675225 CGGACGGTCTATATTGCAAGATG 59.325 47.826 16.68 6.94 0.00 2.90
261 262 3.572682 TCGGACGGTCTATATTGCAAGAT 59.427 43.478 11.88 11.88 0.00 2.40
262 263 2.953648 TCGGACGGTCTATATTGCAAGA 59.046 45.455 4.94 0.00 0.00 3.02
263 264 3.364889 TCGGACGGTCTATATTGCAAG 57.635 47.619 4.94 0.00 0.00 4.01
264 265 3.572682 AGATCGGACGGTCTATATTGCAA 59.427 43.478 5.58 0.00 0.00 4.08
265 266 3.154710 AGATCGGACGGTCTATATTGCA 58.845 45.455 5.58 0.00 0.00 4.08
266 267 3.851976 AGATCGGACGGTCTATATTGC 57.148 47.619 5.58 0.00 0.00 3.56
269 270 8.975663 TCAAATATAGATCGGACGGTCTATAT 57.024 34.615 28.56 28.56 45.63 0.86
270 271 8.837389 CATCAAATATAGATCGGACGGTCTATA 58.163 37.037 27.21 27.21 41.56 1.31
271 272 7.556635 TCATCAAATATAGATCGGACGGTCTAT 59.443 37.037 25.24 25.24 40.02 1.98
272 273 6.882678 TCATCAAATATAGATCGGACGGTCTA 59.117 38.462 16.04 16.04 0.00 2.59
273 274 5.710567 TCATCAAATATAGATCGGACGGTCT 59.289 40.000 12.50 12.50 0.00 3.85
274 275 5.950883 TCATCAAATATAGATCGGACGGTC 58.049 41.667 0.00 0.00 0.00 4.79
275 276 5.977489 TCATCAAATATAGATCGGACGGT 57.023 39.130 0.00 0.00 0.00 4.83
276 277 8.406297 TCTATTCATCAAATATAGATCGGACGG 58.594 37.037 0.00 0.00 0.00 4.79
277 278 9.788960 TTCTATTCATCAAATATAGATCGGACG 57.211 33.333 0.00 0.00 32.56 4.79
328 329 6.237901 TGTGTAGAGAGGTGCATGTATTTTT 58.762 36.000 0.00 0.00 0.00 1.94
329 330 5.804639 TGTGTAGAGAGGTGCATGTATTTT 58.195 37.500 0.00 0.00 0.00 1.82
330 331 5.420725 TGTGTAGAGAGGTGCATGTATTT 57.579 39.130 0.00 0.00 0.00 1.40
331 332 5.620738 ATGTGTAGAGAGGTGCATGTATT 57.379 39.130 0.00 0.00 0.00 1.89
332 333 5.620738 AATGTGTAGAGAGGTGCATGTAT 57.379 39.130 0.00 0.00 0.00 2.29
333 334 5.178061 CAAATGTGTAGAGAGGTGCATGTA 58.822 41.667 0.00 0.00 0.00 2.29
334 335 3.988976 AATGTGTAGAGAGGTGCATGT 57.011 42.857 0.00 0.00 0.00 3.21
335 336 3.181503 GCAAATGTGTAGAGAGGTGCATG 60.182 47.826 0.00 0.00 0.00 4.06
336 337 3.012518 GCAAATGTGTAGAGAGGTGCAT 58.987 45.455 0.00 0.00 0.00 3.96
337 338 2.224499 TGCAAATGTGTAGAGAGGTGCA 60.224 45.455 0.00 0.00 38.35 4.57
338 339 2.417933 CTGCAAATGTGTAGAGAGGTGC 59.582 50.000 0.00 0.00 39.68 5.01
339 340 3.930336 TCTGCAAATGTGTAGAGAGGTG 58.070 45.455 0.00 0.00 41.05 4.00
346 347 6.037610 GGAAGTCCTTATCTGCAAATGTGTAG 59.962 42.308 0.00 0.00 38.72 2.74
347 348 5.880332 GGAAGTCCTTATCTGCAAATGTGTA 59.120 40.000 0.00 0.00 0.00 2.90
348 349 4.702131 GGAAGTCCTTATCTGCAAATGTGT 59.298 41.667 0.00 0.00 0.00 3.72
349 350 4.096984 GGGAAGTCCTTATCTGCAAATGTG 59.903 45.833 0.00 0.00 35.95 3.21
350 351 4.018050 AGGGAAGTCCTTATCTGCAAATGT 60.018 41.667 0.00 0.00 45.47 2.71
351 352 4.530875 AGGGAAGTCCTTATCTGCAAATG 58.469 43.478 0.00 0.00 45.47 2.32
352 353 4.870021 AGGGAAGTCCTTATCTGCAAAT 57.130 40.909 0.00 0.00 45.47 2.32
364 365 0.178301 GGGATGAACGAGGGAAGTCC 59.822 60.000 0.00 0.00 0.00 3.85
365 366 1.196012 AGGGATGAACGAGGGAAGTC 58.804 55.000 0.00 0.00 0.00 3.01
366 367 2.544844 TAGGGATGAACGAGGGAAGT 57.455 50.000 0.00 0.00 0.00 3.01
367 368 3.235200 AGATAGGGATGAACGAGGGAAG 58.765 50.000 0.00 0.00 0.00 3.46
368 369 3.330126 AGATAGGGATGAACGAGGGAA 57.670 47.619 0.00 0.00 0.00 3.97
369 370 3.330126 AAGATAGGGATGAACGAGGGA 57.670 47.619 0.00 0.00 0.00 4.20
370 371 5.546621 TTTAAGATAGGGATGAACGAGGG 57.453 43.478 0.00 0.00 0.00 4.30
371 372 6.583562 AGTTTTAAGATAGGGATGAACGAGG 58.416 40.000 0.00 0.00 0.00 4.63
372 373 7.764443 TGAAGTTTTAAGATAGGGATGAACGAG 59.236 37.037 0.00 0.00 0.00 4.18
373 374 7.617225 TGAAGTTTTAAGATAGGGATGAACGA 58.383 34.615 0.00 0.00 0.00 3.85
374 375 7.843490 TGAAGTTTTAAGATAGGGATGAACG 57.157 36.000 0.00 0.00 0.00 3.95
377 378 9.561069 GCTTATGAAGTTTTAAGATAGGGATGA 57.439 33.333 9.52 0.00 0.00 2.92
378 379 8.787852 GGCTTATGAAGTTTTAAGATAGGGATG 58.212 37.037 9.52 0.00 0.00 3.51
379 380 8.728098 AGGCTTATGAAGTTTTAAGATAGGGAT 58.272 33.333 9.52 0.00 0.00 3.85
380 381 8.102484 AGGCTTATGAAGTTTTAAGATAGGGA 57.898 34.615 9.52 0.00 0.00 4.20
393 394 9.950496 CCATATTGTTCTATAGGCTTATGAAGT 57.050 33.333 0.00 0.00 0.00 3.01
394 395 8.887717 GCCATATTGTTCTATAGGCTTATGAAG 58.112 37.037 0.00 0.00 37.67 3.02
395 396 8.382405 TGCCATATTGTTCTATAGGCTTATGAA 58.618 33.333 0.00 0.00 41.12 2.57
396 397 7.917003 TGCCATATTGTTCTATAGGCTTATGA 58.083 34.615 0.00 0.00 41.12 2.15
397 398 8.618677 CATGCCATATTGTTCTATAGGCTTATG 58.381 37.037 0.00 6.06 41.12 1.90
398 399 7.776969 CCATGCCATATTGTTCTATAGGCTTAT 59.223 37.037 0.00 0.00 41.12 1.73
399 400 7.112122 CCATGCCATATTGTTCTATAGGCTTA 58.888 38.462 0.00 0.00 41.12 3.09
400 401 5.948162 CCATGCCATATTGTTCTATAGGCTT 59.052 40.000 0.00 0.00 41.12 4.35
401 402 5.014544 ACCATGCCATATTGTTCTATAGGCT 59.985 40.000 0.00 0.00 41.12 4.58
402 403 5.124457 CACCATGCCATATTGTTCTATAGGC 59.876 44.000 0.00 0.00 40.93 3.93
403 404 5.649395 CCACCATGCCATATTGTTCTATAGG 59.351 44.000 0.00 0.00 0.00 2.57
404 405 5.124457 GCCACCATGCCATATTGTTCTATAG 59.876 44.000 0.00 0.00 0.00 1.31
405 406 5.009631 GCCACCATGCCATATTGTTCTATA 58.990 41.667 0.00 0.00 0.00 1.31
406 407 3.828451 GCCACCATGCCATATTGTTCTAT 59.172 43.478 0.00 0.00 0.00 1.98
407 408 3.221771 GCCACCATGCCATATTGTTCTA 58.778 45.455 0.00 0.00 0.00 2.10
408 409 2.034124 GCCACCATGCCATATTGTTCT 58.966 47.619 0.00 0.00 0.00 3.01
409 410 2.514205 GCCACCATGCCATATTGTTC 57.486 50.000 0.00 0.00 0.00 3.18
442 443 4.610526 GGAGGCATGGGGATGGCC 62.611 72.222 0.00 0.00 46.86 5.36
443 444 4.962836 CGGAGGCATGGGGATGGC 62.963 72.222 0.00 0.00 46.13 4.40
444 445 4.962836 GCGGAGGCATGGGGATGG 62.963 72.222 0.00 0.00 39.62 3.51
445 446 3.839353 GAGCGGAGGCATGGGGATG 62.839 68.421 0.00 0.00 43.41 3.51
446 447 3.564218 GAGCGGAGGCATGGGGAT 61.564 66.667 0.00 0.00 43.41 3.85
448 449 4.559063 CTGAGCGGAGGCATGGGG 62.559 72.222 0.00 0.00 43.41 4.96
449 450 3.746949 GACTGAGCGGAGGCATGGG 62.747 68.421 0.00 0.00 43.41 4.00
450 451 2.202987 GACTGAGCGGAGGCATGG 60.203 66.667 0.00 0.00 43.41 3.66
451 452 2.202987 GGACTGAGCGGAGGCATG 60.203 66.667 0.00 0.00 43.41 4.06
452 453 3.842923 CGGACTGAGCGGAGGCAT 61.843 66.667 0.00 0.00 43.41 4.40
454 455 4.500116 GTCGGACTGAGCGGAGGC 62.500 72.222 0.00 0.00 40.37 4.70
455 456 3.827898 GGTCGGACTGAGCGGAGG 61.828 72.222 8.23 0.00 35.01 4.30
460 461 2.100879 AACTGGTGGTCGGACTGAGC 62.101 60.000 8.23 6.53 45.46 4.26
461 462 1.067776 GTAACTGGTGGTCGGACTGAG 60.068 57.143 8.23 2.02 0.00 3.35
462 463 0.963962 GTAACTGGTGGTCGGACTGA 59.036 55.000 8.23 0.00 0.00 3.41
463 464 0.037605 GGTAACTGGTGGTCGGACTG 60.038 60.000 8.23 0.00 0.00 3.51
464 465 0.470456 TGGTAACTGGTGGTCGGACT 60.470 55.000 8.23 0.00 37.61 3.85
465 466 0.611714 ATGGTAACTGGTGGTCGGAC 59.388 55.000 0.00 0.00 37.61 4.79
466 467 0.899720 GATGGTAACTGGTGGTCGGA 59.100 55.000 0.00 0.00 37.61 4.55
467 468 0.611200 TGATGGTAACTGGTGGTCGG 59.389 55.000 0.00 0.00 37.61 4.79
468 469 1.722011 GTGATGGTAACTGGTGGTCG 58.278 55.000 0.00 0.00 37.61 4.79
469 470 1.722011 CGTGATGGTAACTGGTGGTC 58.278 55.000 0.00 0.00 37.61 4.02
470 471 0.321298 GCGTGATGGTAACTGGTGGT 60.321 55.000 0.00 0.00 37.61 4.16
471 472 1.024579 GGCGTGATGGTAACTGGTGG 61.025 60.000 0.00 0.00 37.61 4.61
472 473 0.036388 AGGCGTGATGGTAACTGGTG 60.036 55.000 0.00 0.00 37.61 4.17
473 474 0.249398 GAGGCGTGATGGTAACTGGT 59.751 55.000 0.00 0.00 37.61 4.00
474 475 0.249120 TGAGGCGTGATGGTAACTGG 59.751 55.000 0.00 0.00 37.61 4.00
475 476 1.066858 AGTGAGGCGTGATGGTAACTG 60.067 52.381 0.00 0.00 37.61 3.16
476 477 1.204941 GAGTGAGGCGTGATGGTAACT 59.795 52.381 0.00 0.00 37.61 2.24
477 478 1.641577 GAGTGAGGCGTGATGGTAAC 58.358 55.000 0.00 0.00 0.00 2.50
478 479 0.535335 GGAGTGAGGCGTGATGGTAA 59.465 55.000 0.00 0.00 0.00 2.85
479 480 0.324368 AGGAGTGAGGCGTGATGGTA 60.324 55.000 0.00 0.00 0.00 3.25
480 481 1.608717 GAGGAGTGAGGCGTGATGGT 61.609 60.000 0.00 0.00 0.00 3.55
481 482 1.142748 GAGGAGTGAGGCGTGATGG 59.857 63.158 0.00 0.00 0.00 3.51
482 483 1.142748 GGAGGAGTGAGGCGTGATG 59.857 63.158 0.00 0.00 0.00 3.07
483 484 1.000993 AGGAGGAGTGAGGCGTGAT 59.999 57.895 0.00 0.00 0.00 3.06
484 485 1.679305 GAGGAGGAGTGAGGCGTGA 60.679 63.158 0.00 0.00 0.00 4.35
485 486 1.979155 TGAGGAGGAGTGAGGCGTG 60.979 63.158 0.00 0.00 0.00 5.34
486 487 1.979693 GTGAGGAGGAGTGAGGCGT 60.980 63.158 0.00 0.00 0.00 5.68
487 488 2.716017 GGTGAGGAGGAGTGAGGCG 61.716 68.421 0.00 0.00 0.00 5.52
488 489 0.907230 AAGGTGAGGAGGAGTGAGGC 60.907 60.000 0.00 0.00 0.00 4.70
489 490 2.534042 TAAGGTGAGGAGGAGTGAGG 57.466 55.000 0.00 0.00 0.00 3.86
490 491 3.888930 GAGATAAGGTGAGGAGGAGTGAG 59.111 52.174 0.00 0.00 0.00 3.51
491 492 3.529734 AGAGATAAGGTGAGGAGGAGTGA 59.470 47.826 0.00 0.00 0.00 3.41
492 493 3.888930 GAGAGATAAGGTGAGGAGGAGTG 59.111 52.174 0.00 0.00 0.00 3.51
493 494 3.117284 GGAGAGATAAGGTGAGGAGGAGT 60.117 52.174 0.00 0.00 0.00 3.85
494 495 3.140144 AGGAGAGATAAGGTGAGGAGGAG 59.860 52.174 0.00 0.00 0.00 3.69
495 496 3.135279 AGGAGAGATAAGGTGAGGAGGA 58.865 50.000 0.00 0.00 0.00 3.71
496 497 3.140144 AGAGGAGAGATAAGGTGAGGAGG 59.860 52.174 0.00 0.00 0.00 4.30
497 498 4.453480 AGAGGAGAGATAAGGTGAGGAG 57.547 50.000 0.00 0.00 0.00 3.69
498 499 4.890499 AAGAGGAGAGATAAGGTGAGGA 57.110 45.455 0.00 0.00 0.00 3.71
499 500 5.208121 AGAAAGAGGAGAGATAAGGTGAGG 58.792 45.833 0.00 0.00 0.00 3.86
500 501 5.008613 CGAGAAAGAGGAGAGATAAGGTGAG 59.991 48.000 0.00 0.00 0.00 3.51
501 502 4.884744 CGAGAAAGAGGAGAGATAAGGTGA 59.115 45.833 0.00 0.00 0.00 4.02
502 503 4.884744 TCGAGAAAGAGGAGAGATAAGGTG 59.115 45.833 0.00 0.00 0.00 4.00
503 504 5.104277 TCTCGAGAAAGAGGAGAGATAAGGT 60.104 44.000 14.01 0.00 38.71 3.50
504 505 5.373222 TCTCGAGAAAGAGGAGAGATAAGG 58.627 45.833 14.01 0.00 38.71 2.69
508 509 7.020827 AGATATCTCGAGAAAGAGGAGAGAT 57.979 40.000 20.91 10.51 46.55 2.75
509 510 6.433847 AGATATCTCGAGAAAGAGGAGAGA 57.566 41.667 20.91 0.00 39.91 3.10
510 511 7.510549 AAAGATATCTCGAGAAAGAGGAGAG 57.489 40.000 20.91 0.00 39.91 3.20
511 512 8.215050 ACTAAAGATATCTCGAGAAAGAGGAGA 58.785 37.037 20.91 1.11 40.75 3.71
512 513 8.391075 ACTAAAGATATCTCGAGAAAGAGGAG 57.609 38.462 20.91 13.42 38.71 3.69
513 514 8.754991 AACTAAAGATATCTCGAGAAAGAGGA 57.245 34.615 20.91 1.77 38.71 3.71
514 515 9.810545 AAAACTAAAGATATCTCGAGAAAGAGG 57.189 33.333 20.91 7.67 38.71 3.69
535 536 8.739972 CCCATGCAAGAGTAATAAGTAAAAACT 58.260 33.333 0.00 0.00 0.00 2.66
536 537 8.520351 ACCCATGCAAGAGTAATAAGTAAAAAC 58.480 33.333 0.00 0.00 0.00 2.43
537 538 8.644374 ACCCATGCAAGAGTAATAAGTAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
538 539 7.885922 TGACCCATGCAAGAGTAATAAGTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
539 540 7.398829 TGACCCATGCAAGAGTAATAAGTAAA 58.601 34.615 0.00 0.00 0.00 2.01
540 541 6.953101 TGACCCATGCAAGAGTAATAAGTAA 58.047 36.000 0.00 0.00 0.00 2.24
541 542 6.553953 TGACCCATGCAAGAGTAATAAGTA 57.446 37.500 0.00 0.00 0.00 2.24
542 543 5.435686 TGACCCATGCAAGAGTAATAAGT 57.564 39.130 0.00 0.00 0.00 2.24
543 544 6.543465 TGATTGACCCATGCAAGAGTAATAAG 59.457 38.462 0.00 0.00 0.00 1.73
544 545 6.318648 GTGATTGACCCATGCAAGAGTAATAA 59.681 38.462 0.00 0.00 0.00 1.40
545 546 5.822519 GTGATTGACCCATGCAAGAGTAATA 59.177 40.000 0.00 0.00 0.00 0.98
546 547 4.641989 GTGATTGACCCATGCAAGAGTAAT 59.358 41.667 0.00 0.00 0.00 1.89
547 548 4.009675 GTGATTGACCCATGCAAGAGTAA 58.990 43.478 0.00 0.00 0.00 2.24
548 549 3.008923 TGTGATTGACCCATGCAAGAGTA 59.991 43.478 0.00 0.00 0.00 2.59
549 550 2.224843 TGTGATTGACCCATGCAAGAGT 60.225 45.455 0.00 0.00 0.00 3.24
550 551 2.439409 TGTGATTGACCCATGCAAGAG 58.561 47.619 0.00 0.00 0.00 2.85
551 552 2.557924 GTTGTGATTGACCCATGCAAGA 59.442 45.455 0.00 0.00 0.00 3.02
552 553 2.296752 TGTTGTGATTGACCCATGCAAG 59.703 45.455 0.00 0.00 0.00 4.01
553 554 2.296752 CTGTTGTGATTGACCCATGCAA 59.703 45.455 0.00 0.00 0.00 4.08
554 555 1.887854 CTGTTGTGATTGACCCATGCA 59.112 47.619 0.00 0.00 0.00 3.96
555 556 1.888512 ACTGTTGTGATTGACCCATGC 59.111 47.619 0.00 0.00 0.00 4.06
556 557 3.318839 ACAACTGTTGTGATTGACCCATG 59.681 43.478 24.17 0.00 43.48 3.66
557 558 3.565307 ACAACTGTTGTGATTGACCCAT 58.435 40.909 24.17 0.00 43.48 4.00
558 559 3.011566 ACAACTGTTGTGATTGACCCA 57.988 42.857 24.17 0.00 43.48 4.51
559 560 3.632145 AGAACAACTGTTGTGATTGACCC 59.368 43.478 25.31 8.58 44.59 4.46
560 561 4.900635 AGAACAACTGTTGTGATTGACC 57.099 40.909 25.31 9.75 44.59 4.02
572 573 6.919662 ACATGCATTCTTTTACAGAACAACTG 59.080 34.615 0.00 0.00 44.70 3.16
573 574 7.042797 ACATGCATTCTTTTACAGAACAACT 57.957 32.000 0.00 0.00 44.70 3.16
574 575 7.434897 TCAACATGCATTCTTTTACAGAACAAC 59.565 33.333 0.00 0.00 44.70 3.32
575 576 7.487484 TCAACATGCATTCTTTTACAGAACAA 58.513 30.769 0.00 0.00 44.70 2.83
576 577 7.036996 TCAACATGCATTCTTTTACAGAACA 57.963 32.000 0.00 0.00 44.70 3.18
577 578 7.596248 ACATCAACATGCATTCTTTTACAGAAC 59.404 33.333 0.00 0.00 37.68 3.01
578 579 7.660112 ACATCAACATGCATTCTTTTACAGAA 58.340 30.769 0.00 0.00 38.55 3.02
579 580 7.218228 ACATCAACATGCATTCTTTTACAGA 57.782 32.000 0.00 0.00 32.57 3.41
580 581 7.878477 AACATCAACATGCATTCTTTTACAG 57.122 32.000 0.00 0.00 32.57 2.74
581 582 7.114670 CGAAACATCAACATGCATTCTTTTACA 59.885 33.333 0.00 0.00 32.57 2.41
582 583 7.114811 ACGAAACATCAACATGCATTCTTTTAC 59.885 33.333 0.00 0.00 32.57 2.01
583 584 7.114670 CACGAAACATCAACATGCATTCTTTTA 59.885 33.333 0.00 0.00 32.57 1.52
584 585 5.984926 ACGAAACATCAACATGCATTCTTTT 59.015 32.000 0.00 0.00 32.57 2.27
585 586 5.403166 CACGAAACATCAACATGCATTCTTT 59.597 36.000 0.00 0.00 32.57 2.52
586 587 4.919168 CACGAAACATCAACATGCATTCTT 59.081 37.500 0.00 0.00 32.57 2.52
587 588 4.478699 CACGAAACATCAACATGCATTCT 58.521 39.130 0.00 0.00 32.57 2.40
588 589 3.059834 GCACGAAACATCAACATGCATTC 59.940 43.478 0.00 0.00 32.57 2.67
589 590 2.988493 GCACGAAACATCAACATGCATT 59.012 40.909 0.00 0.00 32.57 3.56
590 591 2.030096 TGCACGAAACATCAACATGCAT 60.030 40.909 0.00 0.00 36.72 3.96
591 592 1.336125 TGCACGAAACATCAACATGCA 59.664 42.857 0.00 0.00 39.16 3.96
592 593 2.049077 TGCACGAAACATCAACATGC 57.951 45.000 0.00 0.00 32.57 4.06
593 594 3.181538 GCATTGCACGAAACATCAACATG 60.182 43.478 3.15 0.00 35.92 3.21
594 595 2.988493 GCATTGCACGAAACATCAACAT 59.012 40.909 3.15 0.00 0.00 2.71
595 596 2.223665 TGCATTGCACGAAACATCAACA 60.224 40.909 7.38 0.00 31.71 3.33
596 597 2.392821 TGCATTGCACGAAACATCAAC 58.607 42.857 7.38 0.00 31.71 3.18
597 598 2.789491 TGCATTGCACGAAACATCAA 57.211 40.000 7.38 0.00 31.71 2.57
598 599 2.597520 CATGCATTGCACGAAACATCA 58.402 42.857 14.66 0.00 43.04 3.07
599 600 1.921887 CCATGCATTGCACGAAACATC 59.078 47.619 14.66 0.00 43.04 3.06
600 601 1.404449 CCCATGCATTGCACGAAACAT 60.404 47.619 14.66 0.00 43.04 2.71
601 602 0.038435 CCCATGCATTGCACGAAACA 60.038 50.000 14.66 0.00 43.04 2.83
602 603 1.353609 GCCCATGCATTGCACGAAAC 61.354 55.000 14.66 0.00 43.04 2.78
603 604 1.079956 GCCCATGCATTGCACGAAA 60.080 52.632 14.66 0.00 43.04 3.46
604 605 2.273912 TGCCCATGCATTGCACGAA 61.274 52.632 14.66 0.00 44.23 3.85
605 606 2.675772 TGCCCATGCATTGCACGA 60.676 55.556 14.66 0.00 44.23 4.35
614 615 2.260844 TACTAGCAAGATGCCCATGC 57.739 50.000 0.00 0.00 46.52 4.06
615 616 8.743085 AATATAATACTAGCAAGATGCCCATG 57.257 34.615 0.00 0.00 46.52 3.66
639 640 8.682710 CCGTTCCTAGGATTTCATCATTTTTAA 58.317 33.333 13.57 0.00 0.00 1.52
640 641 8.050325 TCCGTTCCTAGGATTTCATCATTTTTA 58.950 33.333 13.57 0.00 31.86 1.52
641 642 6.889722 TCCGTTCCTAGGATTTCATCATTTTT 59.110 34.615 13.57 0.00 31.86 1.94
642 643 6.423182 TCCGTTCCTAGGATTTCATCATTTT 58.577 36.000 13.57 0.00 31.86 1.82
643 644 6.001449 TCCGTTCCTAGGATTTCATCATTT 57.999 37.500 13.57 0.00 31.86 2.32
644 645 5.630415 TCCGTTCCTAGGATTTCATCATT 57.370 39.130 13.57 0.00 31.86 2.57
645 646 5.630415 TTCCGTTCCTAGGATTTCATCAT 57.370 39.130 13.57 0.00 37.65 2.45
646 647 5.429681 TTTCCGTTCCTAGGATTTCATCA 57.570 39.130 13.57 0.00 37.65 3.07
647 648 5.239525 CCATTTCCGTTCCTAGGATTTCATC 59.760 44.000 13.57 0.00 37.65 2.92
648 649 5.104109 TCCATTTCCGTTCCTAGGATTTCAT 60.104 40.000 13.57 0.00 37.65 2.57
649 650 4.226394 TCCATTTCCGTTCCTAGGATTTCA 59.774 41.667 13.57 0.00 37.65 2.69
650 651 4.575236 GTCCATTTCCGTTCCTAGGATTTC 59.425 45.833 13.57 5.73 37.65 2.17
651 652 4.524053 GTCCATTTCCGTTCCTAGGATTT 58.476 43.478 13.57 0.00 37.65 2.17
652 653 3.118000 GGTCCATTTCCGTTCCTAGGATT 60.118 47.826 13.57 0.00 37.65 3.01
653 654 2.438392 GGTCCATTTCCGTTCCTAGGAT 59.562 50.000 13.57 0.00 37.65 3.24
654 655 1.835531 GGTCCATTTCCGTTCCTAGGA 59.164 52.381 7.62 7.62 35.69 2.94
740 741 3.469863 TTTGCGACGAGGTGGGCTT 62.470 57.895 0.00 0.00 0.00 4.35
762 764 5.901884 CGAATAATCGTGCACTACATTTTCC 59.098 40.000 16.19 2.84 44.06 3.13
786 788 3.470567 CGTGGCGTCTGCTTCGTC 61.471 66.667 0.00 0.00 42.25 4.20
795 797 2.356553 TTGGTACAGCGTGGCGTC 60.357 61.111 0.00 0.00 42.39 5.19
894 898 2.421248 GGGTAGTAGAGTAGACGCAGGT 60.421 54.545 0.00 0.00 0.00 4.00
1161 1194 3.896272 GGAAGAGGGATTGGTAGTACGAT 59.104 47.826 0.00 0.00 0.00 3.73
1362 1398 2.515057 GAGAGGGAGAGCGAGCGA 60.515 66.667 0.00 0.00 0.00 4.93
1416 1455 2.284405 CCGGGGTAGGTGTCCTGT 60.284 66.667 0.00 0.00 34.61 4.00
1668 1707 4.028131 AGTCCTTGGTGTCGGTGAATATA 58.972 43.478 0.00 0.00 0.00 0.86
1681 1720 2.654877 CGGCGTGTAGTCCTTGGT 59.345 61.111 0.00 0.00 0.00 3.67
2034 2108 3.698040 ACCAAAAAGAGCATAGGCAGATG 59.302 43.478 0.67 0.00 44.61 2.90
2076 2168 1.600413 GGAAAGGAACAAGCAAGCACG 60.600 52.381 0.00 0.00 0.00 5.34
2077 2169 1.408702 TGGAAAGGAACAAGCAAGCAC 59.591 47.619 0.00 0.00 0.00 4.40
2084 2176 2.675658 TTCCCCTGGAAAGGAACAAG 57.324 50.000 0.00 0.00 38.93 3.16
2090 2182 0.036294 GTCTCGTTCCCCTGGAAAGG 60.036 60.000 8.58 0.00 43.86 3.11
2104 2196 6.469139 TTCTGAATAGTAGCTATCGTCTCG 57.531 41.667 0.00 0.00 0.00 4.04
2184 2276 5.930837 ATTGACCACAAAAAGGAGAAACA 57.069 34.783 0.00 0.00 39.54 2.83
2210 2302 0.033366 GAGCGGTTTTGGCATTTGGT 59.967 50.000 0.00 0.00 0.00 3.67
2218 2310 2.524569 AAAATGGTGAGCGGTTTTGG 57.475 45.000 0.00 0.00 0.00 3.28
2234 2326 5.843673 TGAAGTGAAGTGTATGGCAAAAA 57.156 34.783 0.00 0.00 0.00 1.94
2264 2358 1.476833 GGCACTGAAGTGGAAGTGGAA 60.477 52.381 12.20 0.00 45.72 3.53
2265 2359 0.108585 GGCACTGAAGTGGAAGTGGA 59.891 55.000 12.20 0.00 45.72 4.02
2266 2360 0.890996 GGGCACTGAAGTGGAAGTGG 60.891 60.000 12.20 0.00 45.72 4.00
2267 2361 0.179020 TGGGCACTGAAGTGGAAGTG 60.179 55.000 12.20 0.00 45.72 3.16
2268 2362 0.179018 GTGGGCACTGAAGTGGAAGT 60.179 55.000 12.20 0.00 45.72 3.01
2269 2363 0.890996 GGTGGGCACTGAAGTGGAAG 60.891 60.000 12.20 0.00 45.72 3.46
2303 2397 2.746362 CTCAGTCATTTGGAGTTGAGCC 59.254 50.000 0.00 0.00 33.92 4.70
2327 2440 2.091541 CACACCTATGGCACGGATTTT 58.908 47.619 11.25 0.00 0.00 1.82
2344 2457 3.849563 GGTACCCATACTATTGCCACA 57.150 47.619 0.00 0.00 0.00 4.17
2386 2499 7.093727 TGGTTCTTGGTGTCTGTTTCAAAATTA 60.094 33.333 0.00 0.00 0.00 1.40
2417 2711 6.016610 TCAGTGCTAATAAACAGTTGAAACCC 60.017 38.462 0.00 0.00 0.00 4.11
3071 3519 0.336737 GTCCAAGGGAGGGAGAGAGA 59.663 60.000 0.00 0.00 34.44 3.10
3072 3520 0.338120 AGTCCAAGGGAGGGAGAGAG 59.662 60.000 0.00 0.00 34.44 3.20
3079 3527 4.103153 TGCTTGATAATAGTCCAAGGGAGG 59.897 45.833 0.00 0.00 38.11 4.30
3205 3653 4.080526 ACCCCAACATCTACATTCAGGTAC 60.081 45.833 0.00 0.00 0.00 3.34
3436 4105 2.051941 CCAAACTGTGGCTTGCCAT 58.948 52.632 17.86 0.00 41.72 4.40
3603 4312 4.585955 TTTGCCAAATTTACGCAAGGTA 57.414 36.364 18.76 7.54 42.93 3.08
3659 4368 6.348540 GCCTGTTTGGATTGTGACTAAACTAG 60.349 42.308 0.00 0.00 38.73 2.57
3662 4371 4.546570 GCCTGTTTGGATTGTGACTAAAC 58.453 43.478 0.00 0.00 38.53 2.01
3663 4372 3.572255 GGCCTGTTTGGATTGTGACTAAA 59.428 43.478 0.00 0.00 38.35 1.85
3665 4374 2.554344 GGGCCTGTTTGGATTGTGACTA 60.554 50.000 0.84 0.00 38.35 2.59
3667 4376 0.603065 GGGCCTGTTTGGATTGTGAC 59.397 55.000 0.84 0.00 38.35 3.67
3668 4377 0.482446 AGGGCCTGTTTGGATTGTGA 59.518 50.000 4.50 0.00 38.35 3.58
3671 4380 2.807676 ACTAAGGGCCTGTTTGGATTG 58.192 47.619 6.92 0.00 38.35 2.67
3672 4381 3.542969 AACTAAGGGCCTGTTTGGATT 57.457 42.857 6.92 0.00 38.35 3.01
3673 4382 3.053619 CCTAACTAAGGGCCTGTTTGGAT 60.054 47.826 23.73 4.38 42.32 3.41
3675 4384 2.723273 CCTAACTAAGGGCCTGTTTGG 58.277 52.381 18.09 18.09 42.32 3.28
3677 4386 1.708551 TGCCTAACTAAGGGCCTGTTT 59.291 47.619 6.92 2.98 46.65 2.83
3678 4387 1.004394 GTGCCTAACTAAGGGCCTGTT 59.996 52.381 6.92 10.95 46.65 3.16
3679 4388 0.618981 GTGCCTAACTAAGGGCCTGT 59.381 55.000 6.92 0.00 46.65 4.00
3680 4389 0.107165 GGTGCCTAACTAAGGGCCTG 60.107 60.000 6.92 0.00 46.65 4.85
3683 4392 2.427095 CAATTGGTGCCTAACTAAGGGC 59.573 50.000 0.00 0.00 46.65 5.19
3722 5468 0.802494 CGCTCGTAGTTTTTGGCCAT 59.198 50.000 6.09 0.00 0.00 4.40
3737 5483 1.542544 GCATGCATTTCAACTCGCTC 58.457 50.000 14.21 0.00 0.00 5.03
3864 5611 8.847196 ACAGTAAACTATTCCTTCTTCCAAAAC 58.153 33.333 0.00 0.00 0.00 2.43
4107 5917 8.451748 GCTTTAGCTAACATTAAGTGCTTACTT 58.548 33.333 5.45 0.00 38.21 2.24
4108 5918 7.975750 GCTTTAGCTAACATTAAGTGCTTACT 58.024 34.615 5.45 0.00 38.21 2.24
4247 6066 7.139392 TCTTAAACGTGCATCTAGTATAGCAG 58.861 38.462 0.00 0.00 38.99 4.24
4264 6083 5.175126 AGTGTGTCGTCAGAAATCTTAAACG 59.825 40.000 4.31 4.31 0.00 3.60
4404 6225 8.414003 TGTAACTTACTGAACATAGGCAGATAG 58.586 37.037 0.00 0.00 36.07 2.08
4639 6460 6.406370 TGTCATGTTCATCGGTCTTAAGATT 58.594 36.000 8.75 0.00 0.00 2.40
4640 6461 5.977635 TGTCATGTTCATCGGTCTTAAGAT 58.022 37.500 8.75 0.00 0.00 2.40
4666 6487 2.503356 CTCAGAGCCATAACTCCCAACT 59.497 50.000 0.00 0.00 37.39 3.16
4667 6488 2.420687 CCTCAGAGCCATAACTCCCAAC 60.421 54.545 0.00 0.00 37.39 3.77
4669 6490 1.008327 TCCTCAGAGCCATAACTCCCA 59.992 52.381 0.00 0.00 37.39 4.37
4670 6491 1.691434 CTCCTCAGAGCCATAACTCCC 59.309 57.143 0.00 0.00 37.39 4.30
4703 6527 4.929146 AAACTAGTAAAGACCCCTGCAT 57.071 40.909 0.00 0.00 0.00 3.96
4725 6579 6.888632 ACTATCAACCAAGCAATGAGAAGAAT 59.111 34.615 0.00 0.00 0.00 2.40
4742 6596 4.408182 AGGCACACCAGATACTATCAAC 57.592 45.455 0.00 0.00 39.06 3.18
4753 6607 3.644966 TCCCTATAAAAGGCACACCAG 57.355 47.619 0.00 0.00 45.03 4.00
4805 6659 1.889530 GCGGGGTCTGCTAGAGTTGT 61.890 60.000 0.00 0.00 0.00 3.32
4913 6769 2.538512 ATCCTTTTATACGGGTCCGC 57.461 50.000 9.55 0.00 44.19 5.54
5050 6939 5.641783 TGTGGATGATTGTTGTATTGTGG 57.358 39.130 0.00 0.00 0.00 4.17
5117 7007 8.618702 TTGTATTCGGGACAAGTTTTGTATTA 57.381 30.769 0.00 0.00 45.52 0.98
5150 7059 6.513720 GCCGGACAGTAACAAACTCATTTTTA 60.514 38.462 5.05 0.00 35.76 1.52
5369 7279 4.952262 ACATCATGACATGCTGTGTTAC 57.048 40.909 21.01 0.00 42.36 2.50
5714 7626 0.525761 TTGCTTCTTTGGTATGCCGC 59.474 50.000 0.00 0.00 37.67 6.53
5763 7676 5.301551 TGATGCAACAATTGTGTTAGAGGTT 59.698 36.000 12.82 0.00 46.47 3.50
5771 7684 2.877786 TCTCGTGATGCAACAATTGTGT 59.122 40.909 12.82 0.00 40.75 3.72
5908 7821 5.004821 CACCGAACGAAGATGATACAAAGAG 59.995 44.000 0.00 0.00 0.00 2.85
5916 7829 0.462047 GGGCACCGAACGAAGATGAT 60.462 55.000 0.00 0.00 40.86 2.45
5947 7860 2.567169 TGATCATCCGTGTCTTTGGTCT 59.433 45.455 0.00 0.00 0.00 3.85
5978 7891 3.318017 ACAATTGAGTCAGTGCGTAGAC 58.682 45.455 13.59 0.00 35.02 2.59
6116 8033 8.863049 GTCGGTATTTTACTCAACGAAGAAATA 58.137 33.333 0.00 0.00 0.00 1.40
6205 8122 3.467226 CGTATCCACCGCACCCCT 61.467 66.667 0.00 0.00 0.00 4.79
6235 8156 6.036408 CGAGATGTTGATGCAAGACTATTTCA 59.964 38.462 0.00 0.00 0.00 2.69
6572 8723 1.077787 ATTCCGGCCAAATCTGCGA 60.078 52.632 2.24 0.00 0.00 5.10
6626 8777 3.470888 CCCATCTCCTTCCGCCGT 61.471 66.667 0.00 0.00 0.00 5.68
6726 8877 1.454847 GCCCCAACCCGCATATTCA 60.455 57.895 0.00 0.00 0.00 2.57
6842 8994 1.652563 GCCCCGATCCGCAAAATAC 59.347 57.895 0.00 0.00 0.00 1.89
6918 9070 8.525729 ACTCCCTAAATACATAGAAATGGGAT 57.474 34.615 0.00 0.00 40.04 3.85
6954 9441 1.439543 GGGATCTATTGGAGCTGGGT 58.560 55.000 0.00 0.00 0.00 4.51
6955 9442 0.695347 GGGGATCTATTGGAGCTGGG 59.305 60.000 0.00 0.00 0.00 4.45
6956 9443 1.438469 TGGGGATCTATTGGAGCTGG 58.562 55.000 0.00 0.00 0.00 4.85
7013 9500 4.444611 CCTATATATTGGGGGAGTTGGGA 58.555 47.826 5.37 0.00 0.00 4.37
7084 10862 1.218316 GAGAAACGAGGGCGGTGAT 59.782 57.895 0.00 0.00 43.17 3.06
7105 10883 8.195436 TGAGATATTTCTTTAGGTAGACAACGG 58.805 37.037 0.00 0.00 30.30 4.44
7114 10892 9.965902 ACTTGTCAATGAGATATTTCTTTAGGT 57.034 29.630 0.00 0.00 30.30 3.08
7165 10945 0.912487 TCGCAGACCCCCAATAACCT 60.912 55.000 0.00 0.00 0.00 3.50
7221 11001 1.143838 CGCATCTCCAACCGATCCA 59.856 57.895 0.00 0.00 0.00 3.41
7239 11019 1.244019 AAAGTGGCGCATCTCCAACC 61.244 55.000 10.83 0.00 35.01 3.77
7250 11030 2.083774 TGATTTGCTAGGAAAGTGGCG 58.916 47.619 15.00 0.00 0.00 5.69
7312 11094 1.130054 AAGCTGCTTGTGGAGAGGGA 61.130 55.000 15.16 0.00 33.10 4.20
7337 11119 4.919754 CACAACAAATAAAAGAGCAGCTCC 59.080 41.667 19.40 1.14 0.00 4.70
7370 11153 5.268118 TGTTGATATCGAGCTTGTCATCT 57.732 39.130 14.59 0.00 0.00 2.90
7386 12780 3.457380 AGCACATGGAGACCTATGTTGAT 59.543 43.478 0.00 0.00 35.46 2.57
7415 12809 6.352737 GGAAGTCCAGGAATGTAAATAGTGGA 60.353 42.308 0.00 0.00 35.64 4.02
7467 12873 1.001764 TTGTGCCTCCTGCTGGATG 60.002 57.895 13.33 11.52 42.29 3.51
7500 12906 6.481976 CGTTTTAGCAATGTCCCATGATACTA 59.518 38.462 0.00 0.00 0.00 1.82
7553 12975 8.134895 AGATGTACGCTTCAGAAAATTCAAAAA 58.865 29.630 0.00 0.00 0.00 1.94
7554 12976 7.648142 AGATGTACGCTTCAGAAAATTCAAAA 58.352 30.769 0.00 0.00 0.00 2.44
7555 12977 7.202016 AGATGTACGCTTCAGAAAATTCAAA 57.798 32.000 0.00 0.00 0.00 2.69
7556 12978 6.801539 AGATGTACGCTTCAGAAAATTCAA 57.198 33.333 0.00 0.00 0.00 2.69
7557 12979 6.426633 TCAAGATGTACGCTTCAGAAAATTCA 59.573 34.615 0.00 0.00 0.00 2.57
7558 12980 6.738649 GTCAAGATGTACGCTTCAGAAAATTC 59.261 38.462 0.00 0.00 0.00 2.17
7559 12981 6.348540 GGTCAAGATGTACGCTTCAGAAAATT 60.349 38.462 0.00 0.00 0.00 1.82
7560 12982 5.122396 GGTCAAGATGTACGCTTCAGAAAAT 59.878 40.000 0.00 0.00 0.00 1.82
7561 12983 4.451096 GGTCAAGATGTACGCTTCAGAAAA 59.549 41.667 0.00 0.00 0.00 2.29
7562 12984 3.994392 GGTCAAGATGTACGCTTCAGAAA 59.006 43.478 0.00 0.00 0.00 2.52
7563 12985 3.006430 TGGTCAAGATGTACGCTTCAGAA 59.994 43.478 0.00 0.00 0.00 3.02
7564 12986 2.560981 TGGTCAAGATGTACGCTTCAGA 59.439 45.455 0.00 0.00 0.00 3.27
7565 12987 2.959516 TGGTCAAGATGTACGCTTCAG 58.040 47.619 0.00 0.00 0.00 3.02
7566 12988 3.610040 ATGGTCAAGATGTACGCTTCA 57.390 42.857 0.00 0.00 0.00 3.02
7567 12989 3.802685 GGTATGGTCAAGATGTACGCTTC 59.197 47.826 0.00 0.00 0.00 3.86
7568 12990 3.196901 TGGTATGGTCAAGATGTACGCTT 59.803 43.478 0.00 0.00 0.00 4.68
7569 12991 2.764010 TGGTATGGTCAAGATGTACGCT 59.236 45.455 0.00 0.00 0.00 5.07
7570 12992 3.173668 TGGTATGGTCAAGATGTACGC 57.826 47.619 0.00 0.00 0.00 4.42
7571 12993 4.566759 CACTTGGTATGGTCAAGATGTACG 59.433 45.833 10.30 0.00 42.94 3.67
7572 12994 5.730550 TCACTTGGTATGGTCAAGATGTAC 58.269 41.667 10.30 0.00 42.94 2.90
7573 12995 6.367374 TTCACTTGGTATGGTCAAGATGTA 57.633 37.500 10.30 0.00 42.94 2.29
7574 12996 4.908601 TCACTTGGTATGGTCAAGATGT 57.091 40.909 10.30 0.00 42.94 3.06
7575 12997 7.554118 ACTTATTCACTTGGTATGGTCAAGATG 59.446 37.037 10.30 5.75 42.94 2.90
7576 12998 7.554118 CACTTATTCACTTGGTATGGTCAAGAT 59.446 37.037 10.30 0.00 42.94 2.40
7577 12999 6.878923 CACTTATTCACTTGGTATGGTCAAGA 59.121 38.462 10.30 0.00 42.94 3.02
7578 13000 6.655003 ACACTTATTCACTTGGTATGGTCAAG 59.345 38.462 0.00 0.00 45.03 3.02
7579 13001 6.539173 ACACTTATTCACTTGGTATGGTCAA 58.461 36.000 0.00 0.00 0.00 3.18
7580 13002 6.013725 AGACACTTATTCACTTGGTATGGTCA 60.014 38.462 0.00 0.00 0.00 4.02
7581 13003 6.313905 CAGACACTTATTCACTTGGTATGGTC 59.686 42.308 0.00 0.00 0.00 4.02
7582 13004 6.173339 CAGACACTTATTCACTTGGTATGGT 58.827 40.000 0.00 0.00 0.00 3.55
7583 13005 6.173339 ACAGACACTTATTCACTTGGTATGG 58.827 40.000 0.00 0.00 0.00 2.74
7584 13006 6.035005 CGACAGACACTTATTCACTTGGTATG 59.965 42.308 0.00 0.00 0.00 2.39
7585 13007 6.100004 CGACAGACACTTATTCACTTGGTAT 58.900 40.000 0.00 0.00 0.00 2.73
7624 13110 0.605319 TGAGTTTTGGCTAGTGGGCG 60.605 55.000 0.00 0.00 44.11 6.13
7745 13231 3.686726 GGACATGTTACCTCAAGCTCTTG 59.313 47.826 0.00 3.32 41.71 3.02
7746 13232 3.584848 AGGACATGTTACCTCAAGCTCTT 59.415 43.478 0.00 0.00 0.00 2.85
7927 13413 3.108376 GACTTGTGGAGGGGAGATAAGT 58.892 50.000 0.00 0.00 0.00 2.24
8019 13520 6.321821 AGCAAGGGGTTATAACTATGACAA 57.678 37.500 15.05 0.00 0.00 3.18
8020 13521 5.968676 AGCAAGGGGTTATAACTATGACA 57.031 39.130 15.05 0.00 0.00 3.58
8050 13601 4.202305 GCAGAGCCTAGTTACCAAGATGAT 60.202 45.833 0.00 0.00 0.00 2.45
8217 13768 4.574013 ACAACGTATTTTACCGAAACCACA 59.426 37.500 0.00 0.00 0.00 4.17
8218 13769 5.094429 ACAACGTATTTTACCGAAACCAC 57.906 39.130 0.00 0.00 0.00 4.16
8219 13770 5.505324 CCAACAACGTATTTTACCGAAACCA 60.505 40.000 0.00 0.00 0.00 3.67
8265 13825 6.581171 AATCTGCGAGATTTCTTTTCCTTT 57.419 33.333 5.80 0.00 41.90 3.11
8376 13936 1.194781 ACAGATTGCCAGGACTCGGT 61.195 55.000 0.00 0.00 0.00 4.69
8648 14208 5.245977 CCTTTTGTTCCTGGTTGTTATGGAT 59.754 40.000 0.00 0.00 0.00 3.41
8761 14321 3.004315 CACAAGAACTACGGGTGCAATTT 59.996 43.478 0.00 0.00 0.00 1.82
8762 14322 2.552315 CACAAGAACTACGGGTGCAATT 59.448 45.455 0.00 0.00 0.00 2.32
8763 14323 2.151202 CACAAGAACTACGGGTGCAAT 58.849 47.619 0.00 0.00 0.00 3.56
8764 14324 1.139256 TCACAAGAACTACGGGTGCAA 59.861 47.619 0.00 0.00 0.00 4.08
8765 14325 0.753867 TCACAAGAACTACGGGTGCA 59.246 50.000 0.00 0.00 0.00 4.57
8766 14326 1.873698 TTCACAAGAACTACGGGTGC 58.126 50.000 0.00 0.00 0.00 5.01
8767 14327 3.813166 ACATTTCACAAGAACTACGGGTG 59.187 43.478 0.00 0.00 32.39 4.61
8768 14328 4.081322 ACATTTCACAAGAACTACGGGT 57.919 40.909 0.00 0.00 32.39 5.28
8769 14329 4.755123 AGAACATTTCACAAGAACTACGGG 59.245 41.667 0.00 0.00 32.39 5.28
8770 14330 5.924475 AGAACATTTCACAAGAACTACGG 57.076 39.130 0.00 0.00 32.39 4.02
8771 14331 7.402811 TGTAGAACATTTCACAAGAACTACG 57.597 36.000 0.00 0.00 33.99 3.51
8847 14427 5.367302 GGAAAGCTTCTGAGATAGCAGATT 58.633 41.667 15.43 9.26 43.84 2.40
8848 14428 4.202346 GGGAAAGCTTCTGAGATAGCAGAT 60.202 45.833 15.43 4.80 43.84 2.90
9097 14677 9.565213 AAAGTAGTATGTACGTGCTTTAGTTAG 57.435 33.333 11.13 0.00 30.76 2.34
9142 14809 7.175990 GTCCACCAAAGAAATTAATACAGTCCA 59.824 37.037 0.00 0.00 0.00 4.02
9187 14854 1.415659 ACTAGGGATGCATGCAGACTC 59.584 52.381 26.69 20.98 0.00 3.36
9188 14855 1.504912 ACTAGGGATGCATGCAGACT 58.495 50.000 26.69 23.11 0.00 3.24
9189 14856 2.103094 TGTACTAGGGATGCATGCAGAC 59.897 50.000 26.69 20.70 0.00 3.51
9190 14857 2.397597 TGTACTAGGGATGCATGCAGA 58.602 47.619 26.69 2.79 0.00 4.26
9195 14864 5.830799 TGATCATTGTACTAGGGATGCAT 57.169 39.130 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.