Multiple sequence alignment - TraesCS3B01G308600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G308600 chr3B 100.000 2529 0 0 1 2529 496854736 496852208 0.000000e+00 4671
1 TraesCS3B01G308600 chr3B 94.914 983 41 8 1551 2529 660137175 660138152 0.000000e+00 1530
2 TraesCS3B01G308600 chr3B 94.866 448 23 0 1 448 173876342 173876789 0.000000e+00 701
3 TraesCS3B01G308600 chr3B 94.420 448 25 0 1 448 456534781 456535228 0.000000e+00 689
4 TraesCS3B01G308600 chr3B 96.053 304 12 0 579 882 790793438 790793135 1.750000e-136 496
5 TraesCS3B01G308600 chr3B 95.469 309 14 0 574 882 606376047 606376355 6.280000e-136 494
6 TraesCS3B01G308600 chr7B 95.224 984 43 4 1548 2529 297234642 297235623 0.000000e+00 1554
7 TraesCS3B01G308600 chr7B 95.204 980 41 3 1551 2529 184008594 184007620 0.000000e+00 1544
8 TraesCS3B01G308600 chr7B 94.919 984 46 4 1548 2529 173848568 173849549 0.000000e+00 1537
9 TraesCS3B01G308600 chr7B 95.536 448 20 0 1 448 173848122 173848569 0.000000e+00 717
10 TraesCS3B01G308600 chr7B 94.643 448 24 0 1 448 512116414 512116861 0.000000e+00 695
11 TraesCS3B01G308600 chr7B 94.643 448 24 0 1 448 645807692 645808139 0.000000e+00 695
12 TraesCS3B01G308600 chr7B 87.544 570 63 5 968 1534 113445574 113445010 0.000000e+00 652
13 TraesCS3B01G308600 chr7B 95.765 307 13 0 576 882 633031180 633030874 1.750000e-136 496
14 TraesCS3B01G308600 chr4B 95.020 984 45 4 1548 2528 568937310 568938292 0.000000e+00 1543
15 TraesCS3B01G308600 chr4B 95.089 448 22 0 1 448 69725149 69724702 0.000000e+00 706
16 TraesCS3B01G308600 chr4B 95.752 306 13 0 576 881 211659126 211658821 6.280000e-136 494
17 TraesCS3B01G308600 chr2B 95.020 984 45 4 1548 2529 725683627 725684608 0.000000e+00 1543
18 TraesCS3B01G308600 chr2B 95.010 982 44 5 1551 2529 696771889 696770910 0.000000e+00 1537
19 TraesCS3B01G308600 chr2B 94.908 982 44 4 1548 2528 557935444 557936420 0.000000e+00 1531
20 TraesCS3B01G308600 chr2B 91.396 616 46 3 937 1552 776645825 776645217 0.000000e+00 837
21 TraesCS3B01G308600 chr2B 94.196 448 26 0 1 448 717308268 717308715 0.000000e+00 684
22 TraesCS3B01G308600 chr2B 95.527 313 13 1 575 886 697201371 697201059 1.350000e-137 499
23 TraesCS3B01G308600 chr1B 95.112 982 42 6 1551 2529 608256551 608255573 0.000000e+00 1543
24 TraesCS3B01G308600 chr1B 94.420 448 25 0 1 448 374168179 374167732 0.000000e+00 689
25 TraesCS3B01G308600 chr1B 94.382 445 23 2 4 448 447045561 447045119 0.000000e+00 682
26 TraesCS3B01G308600 chr1B 96.066 305 12 0 577 881 49024259 49024563 4.860000e-137 497
27 TraesCS3B01G308600 chr1B 95.765 307 13 0 576 882 588322719 588322413 1.750000e-136 496
28 TraesCS3B01G308600 chr5D 91.463 574 42 2 968 1538 515094333 515093764 0.000000e+00 782
29 TraesCS3B01G308600 chr5D 89.949 587 51 6 968 1550 515039693 515039111 0.000000e+00 750
30 TraesCS3B01G308600 chr5D 75.375 333 62 11 1024 1354 426165126 426164812 2.620000e-30 143
31 TraesCS3B01G308600 chr2D 90.614 586 48 2 968 1550 534129370 534129951 0.000000e+00 771
32 TraesCS3B01G308600 chr2D 89.078 586 56 3 968 1550 534122899 534123479 0.000000e+00 721
33 TraesCS3B01G308600 chr2D 87.714 350 31 5 880 1217 633259238 633258889 5.070000e-107 398
34 TraesCS3B01G308600 chr2D 87.429 350 32 5 880 1217 633237403 633237054 2.360000e-105 392
35 TraesCS3B01G308600 chr6D 87.755 686 48 12 878 1550 20475269 20474607 0.000000e+00 769
36 TraesCS3B01G308600 chr6D 81.579 342 50 4 1016 1354 803624 803955 1.150000e-68 270
37 TraesCS3B01G308600 chr6D 83.582 201 33 0 1015 1215 1539805 1539605 3.320000e-44 189
38 TraesCS3B01G308600 chr5A 87.910 670 57 11 880 1533 643312180 643311519 0.000000e+00 767
39 TraesCS3B01G308600 chr3D 88.133 573 56 6 971 1542 594958398 594957837 0.000000e+00 671
40 TraesCS3B01G308600 chr7D 87.307 583 64 7 968 1546 151542623 151542047 0.000000e+00 658
41 TraesCS3B01G308600 chr7A 96.405 306 11 0 577 882 4785068 4784763 2.900000e-139 505
42 TraesCS3B01G308600 chr6B 95.484 310 13 1 577 885 551770219 551769910 6.280000e-136 494
43 TraesCS3B01G308600 chr6A 82.059 340 49 4 1016 1354 286355 286683 1.920000e-71 279
44 TraesCS3B01G308600 chr6A 82.915 199 34 0 1007 1205 8387978 8388176 2.000000e-41 180
45 TraesCS3B01G308600 chrUn 91.034 145 13 0 968 1112 31317490 31317634 1.980000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G308600 chr3B 496852208 496854736 2528 True 4671 4671 100.0000 1 2529 1 chr3B.!!$R1 2528
1 TraesCS3B01G308600 chr3B 660137175 660138152 977 False 1530 1530 94.9140 1551 2529 1 chr3B.!!$F4 978
2 TraesCS3B01G308600 chr7B 297234642 297235623 981 False 1554 1554 95.2240 1548 2529 1 chr7B.!!$F1 981
3 TraesCS3B01G308600 chr7B 184007620 184008594 974 True 1544 1544 95.2040 1551 2529 1 chr7B.!!$R2 978
4 TraesCS3B01G308600 chr7B 173848122 173849549 1427 False 1127 1537 95.2275 1 2529 2 chr7B.!!$F4 2528
5 TraesCS3B01G308600 chr7B 113445010 113445574 564 True 652 652 87.5440 968 1534 1 chr7B.!!$R1 566
6 TraesCS3B01G308600 chr4B 568937310 568938292 982 False 1543 1543 95.0200 1548 2528 1 chr4B.!!$F1 980
7 TraesCS3B01G308600 chr2B 725683627 725684608 981 False 1543 1543 95.0200 1548 2529 1 chr2B.!!$F3 981
8 TraesCS3B01G308600 chr2B 696770910 696771889 979 True 1537 1537 95.0100 1551 2529 1 chr2B.!!$R1 978
9 TraesCS3B01G308600 chr2B 557935444 557936420 976 False 1531 1531 94.9080 1548 2528 1 chr2B.!!$F1 980
10 TraesCS3B01G308600 chr2B 776645217 776645825 608 True 837 837 91.3960 937 1552 1 chr2B.!!$R3 615
11 TraesCS3B01G308600 chr1B 608255573 608256551 978 True 1543 1543 95.1120 1551 2529 1 chr1B.!!$R4 978
12 TraesCS3B01G308600 chr5D 515093764 515094333 569 True 782 782 91.4630 968 1538 1 chr5D.!!$R3 570
13 TraesCS3B01G308600 chr5D 515039111 515039693 582 True 750 750 89.9490 968 1550 1 chr5D.!!$R2 582
14 TraesCS3B01G308600 chr2D 534129370 534129951 581 False 771 771 90.6140 968 1550 1 chr2D.!!$F2 582
15 TraesCS3B01G308600 chr2D 534122899 534123479 580 False 721 721 89.0780 968 1550 1 chr2D.!!$F1 582
16 TraesCS3B01G308600 chr6D 20474607 20475269 662 True 769 769 87.7550 878 1550 1 chr6D.!!$R2 672
17 TraesCS3B01G308600 chr5A 643311519 643312180 661 True 767 767 87.9100 880 1533 1 chr5A.!!$R1 653
18 TraesCS3B01G308600 chr3D 594957837 594958398 561 True 671 671 88.1330 971 1542 1 chr3D.!!$R1 571
19 TraesCS3B01G308600 chr7D 151542047 151542623 576 True 658 658 87.3070 968 1546 1 chr7D.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 935 0.029834 CACACGCAAAGAAGCTGCTT 59.97 50.0 15.92 15.92 37.67 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2036 0.673437 CCATGTGCTGACCCGTTTTT 59.327 50.0 0.0 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.295885 CTCCAGTTCCATGATCTTGGC 58.704 52.381 20.32 9.38 36.66 4.52
88 89 2.741985 CCTGGCGTCGAATGTGCA 60.742 61.111 0.00 0.00 0.00 4.57
89 90 2.743752 CCTGGCGTCGAATGTGCAG 61.744 63.158 0.00 0.00 0.00 4.41
99 100 3.071479 TCGAATGTGCAGGTTTAACTCC 58.929 45.455 0.00 0.00 0.00 3.85
153 154 2.422519 GGTGCTGATCATCTCCCATTGT 60.423 50.000 6.41 0.00 0.00 2.71
163 164 1.134401 TCTCCCATTGTTCATCTCGGC 60.134 52.381 0.00 0.00 0.00 5.54
170 171 4.467084 TTCATCTCGGCGCCCACC 62.467 66.667 23.46 0.00 0.00 4.61
176 177 3.976701 CTCGGCGCCCACCAATCTT 62.977 63.158 23.46 0.00 0.00 2.40
249 250 2.038329 ATGTGGGCTGCCATGCTT 59.962 55.556 22.05 5.09 0.00 3.91
272 273 0.250513 CCTAGACTCCAGGTTGGTGC 59.749 60.000 0.00 0.00 39.03 5.01
282 283 1.542915 CAGGTTGGTGCATCAAAGGAG 59.457 52.381 15.37 1.05 0.00 3.69
284 285 2.158475 AGGTTGGTGCATCAAAGGAGAA 60.158 45.455 15.37 0.00 0.00 2.87
298 299 3.121929 AGGAGAACTCTATGGGCTCAA 57.878 47.619 0.00 0.00 0.00 3.02
303 304 3.776969 AGAACTCTATGGGCTCAATGACA 59.223 43.478 0.00 0.00 0.00 3.58
347 348 4.990257 ACTTGAATTTGAATCATCCAGCG 58.010 39.130 0.00 0.00 0.00 5.18
365 366 1.204941 GCGCTCCTCTTCAGGTAAAGA 59.795 52.381 0.00 0.00 41.28 2.52
407 408 2.301870 AGCTTGGTACTCCGATGTTCAA 59.698 45.455 0.00 0.00 36.30 2.69
444 445 0.761323 TCAGGTGTCGTCCAAAGGGA 60.761 55.000 0.00 0.00 42.29 4.20
446 447 0.763223 AGGTGTCGTCCAAAGGGAGT 60.763 55.000 0.00 0.00 46.12 3.85
447 448 0.971386 GGTGTCGTCCAAAGGGAGTA 59.029 55.000 0.00 0.00 46.12 2.59
448 449 1.067071 GGTGTCGTCCAAAGGGAGTAG 60.067 57.143 0.00 0.00 46.12 2.57
449 450 1.617357 GTGTCGTCCAAAGGGAGTAGT 59.383 52.381 0.00 0.00 46.12 2.73
450 451 2.821969 GTGTCGTCCAAAGGGAGTAGTA 59.178 50.000 0.00 0.00 46.12 1.82
451 452 3.256631 GTGTCGTCCAAAGGGAGTAGTAA 59.743 47.826 0.00 0.00 46.12 2.24
452 453 3.896888 TGTCGTCCAAAGGGAGTAGTAAA 59.103 43.478 0.00 0.00 46.12 2.01
453 454 4.021719 TGTCGTCCAAAGGGAGTAGTAAAG 60.022 45.833 0.00 0.00 46.12 1.85
454 455 4.219288 GTCGTCCAAAGGGAGTAGTAAAGA 59.781 45.833 0.00 0.00 46.12 2.52
455 456 5.021458 TCGTCCAAAGGGAGTAGTAAAGAT 58.979 41.667 0.00 0.00 46.12 2.40
456 457 5.105473 TCGTCCAAAGGGAGTAGTAAAGATG 60.105 44.000 0.00 0.00 46.12 2.90
457 458 5.429130 GTCCAAAGGGAGTAGTAAAGATGG 58.571 45.833 0.00 0.00 46.12 3.51
458 459 5.189145 GTCCAAAGGGAGTAGTAAAGATGGA 59.811 44.000 0.00 0.00 46.12 3.41
459 460 5.788533 TCCAAAGGGAGTAGTAAAGATGGAA 59.211 40.000 0.00 0.00 38.64 3.53
460 461 6.273730 TCCAAAGGGAGTAGTAAAGATGGAAA 59.726 38.462 0.00 0.00 38.64 3.13
461 462 6.374613 CCAAAGGGAGTAGTAAAGATGGAAAC 59.625 42.308 0.00 0.00 35.59 2.78
462 463 5.340439 AGGGAGTAGTAAAGATGGAAACG 57.660 43.478 0.00 0.00 0.00 3.60
463 464 4.161754 AGGGAGTAGTAAAGATGGAAACGG 59.838 45.833 0.00 0.00 0.00 4.44
464 465 4.439968 GGAGTAGTAAAGATGGAAACGGG 58.560 47.826 0.00 0.00 0.00 5.28
465 466 4.161001 GGAGTAGTAAAGATGGAAACGGGA 59.839 45.833 0.00 0.00 0.00 5.14
466 467 5.337813 GGAGTAGTAAAGATGGAAACGGGAA 60.338 44.000 0.00 0.00 0.00 3.97
467 468 5.485620 AGTAGTAAAGATGGAAACGGGAAC 58.514 41.667 0.00 0.00 0.00 3.62
468 469 4.635699 AGTAAAGATGGAAACGGGAACT 57.364 40.909 0.00 0.00 0.00 3.01
469 470 5.750352 AGTAAAGATGGAAACGGGAACTA 57.250 39.130 0.00 0.00 0.00 2.24
470 471 5.731591 AGTAAAGATGGAAACGGGAACTAG 58.268 41.667 0.00 0.00 0.00 2.57
471 472 4.635699 AAAGATGGAAACGGGAACTAGT 57.364 40.909 0.00 0.00 0.00 2.57
472 473 5.750352 AAAGATGGAAACGGGAACTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
473 474 4.732672 AGATGGAAACGGGAACTAGTAC 57.267 45.455 0.00 0.00 0.00 2.73
474 475 4.351127 AGATGGAAACGGGAACTAGTACT 58.649 43.478 0.00 0.00 0.00 2.73
475 476 5.513233 AGATGGAAACGGGAACTAGTACTA 58.487 41.667 1.89 1.89 0.00 1.82
476 477 5.593502 AGATGGAAACGGGAACTAGTACTAG 59.406 44.000 25.30 25.30 39.04 2.57
477 478 4.922206 TGGAAACGGGAACTAGTACTAGA 58.078 43.478 31.93 6.21 36.97 2.43
478 479 4.946157 TGGAAACGGGAACTAGTACTAGAG 59.054 45.833 31.93 19.36 36.97 2.43
479 480 4.337836 GGAAACGGGAACTAGTACTAGAGG 59.662 50.000 31.93 18.29 36.97 3.69
480 481 4.851639 AACGGGAACTAGTACTAGAGGA 57.148 45.455 31.93 0.00 36.97 3.71
481 482 4.420522 ACGGGAACTAGTACTAGAGGAG 57.579 50.000 31.93 20.50 36.97 3.69
482 483 3.136260 ACGGGAACTAGTACTAGAGGAGG 59.864 52.174 31.93 20.02 36.97 4.30
483 484 3.489355 GGGAACTAGTACTAGAGGAGGC 58.511 54.545 31.93 15.14 36.97 4.70
484 485 3.489355 GGAACTAGTACTAGAGGAGGCC 58.511 54.545 31.93 19.05 36.97 5.19
485 486 2.934886 ACTAGTACTAGAGGAGGCCG 57.065 55.000 31.93 7.57 36.97 6.13
486 487 1.420891 ACTAGTACTAGAGGAGGCCGG 59.579 57.143 31.93 0.00 36.97 6.13
487 488 0.769873 TAGTACTAGAGGAGGCCGGG 59.230 60.000 2.18 0.00 0.00 5.73
488 489 2.197875 TACTAGAGGAGGCCGGGC 59.802 66.667 22.67 22.67 0.00 6.13
499 500 4.176752 GCCGGGCCCAACTCCTAG 62.177 72.222 24.92 1.64 0.00 3.02
500 501 4.176752 CCGGGCCCAACTCCTAGC 62.177 72.222 24.92 0.00 0.00 3.42
501 502 3.399181 CGGGCCCAACTCCTAGCA 61.399 66.667 24.92 0.00 0.00 3.49
502 503 2.966732 CGGGCCCAACTCCTAGCAA 61.967 63.158 24.92 0.00 0.00 3.91
503 504 1.382629 GGGCCCAACTCCTAGCAAA 59.617 57.895 19.95 0.00 0.00 3.68
504 505 0.681243 GGGCCCAACTCCTAGCAAAG 60.681 60.000 19.95 0.00 0.00 2.77
505 506 0.328258 GGCCCAACTCCTAGCAAAGA 59.672 55.000 0.00 0.00 0.00 2.52
506 507 1.064389 GGCCCAACTCCTAGCAAAGAT 60.064 52.381 0.00 0.00 0.00 2.40
507 508 2.019984 GCCCAACTCCTAGCAAAGATG 58.980 52.381 0.00 0.00 0.00 2.90
508 509 2.356125 GCCCAACTCCTAGCAAAGATGA 60.356 50.000 0.00 0.00 0.00 2.92
509 510 3.873801 GCCCAACTCCTAGCAAAGATGAA 60.874 47.826 0.00 0.00 0.00 2.57
510 511 4.530875 CCCAACTCCTAGCAAAGATGAAT 58.469 43.478 0.00 0.00 0.00 2.57
511 512 5.684704 CCCAACTCCTAGCAAAGATGAATA 58.315 41.667 0.00 0.00 0.00 1.75
512 513 5.529060 CCCAACTCCTAGCAAAGATGAATAC 59.471 44.000 0.00 0.00 0.00 1.89
513 514 5.235186 CCAACTCCTAGCAAAGATGAATACG 59.765 44.000 0.00 0.00 0.00 3.06
514 515 5.854010 ACTCCTAGCAAAGATGAATACGA 57.146 39.130 0.00 0.00 0.00 3.43
515 516 5.593010 ACTCCTAGCAAAGATGAATACGAC 58.407 41.667 0.00 0.00 0.00 4.34
516 517 5.127194 ACTCCTAGCAAAGATGAATACGACA 59.873 40.000 0.00 0.00 0.00 4.35
517 518 5.348986 TCCTAGCAAAGATGAATACGACAC 58.651 41.667 0.00 0.00 0.00 3.67
518 519 4.207224 CCTAGCAAAGATGAATACGACACG 59.793 45.833 0.00 0.00 0.00 4.49
519 520 3.845178 AGCAAAGATGAATACGACACGA 58.155 40.909 0.00 0.00 0.00 4.35
520 521 3.859961 AGCAAAGATGAATACGACACGAG 59.140 43.478 0.00 0.00 0.00 4.18
521 522 3.612860 GCAAAGATGAATACGACACGAGT 59.387 43.478 0.00 0.00 0.00 4.18
522 523 4.091509 GCAAAGATGAATACGACACGAGTT 59.908 41.667 0.00 0.00 0.00 3.01
523 524 5.721510 GCAAAGATGAATACGACACGAGTTC 60.722 44.000 0.00 0.00 0.00 3.01
524 525 3.681855 AGATGAATACGACACGAGTTCG 58.318 45.455 0.00 0.00 46.33 3.95
525 526 3.373130 AGATGAATACGACACGAGTTCGA 59.627 43.478 8.72 0.00 43.02 3.71
526 527 2.843077 TGAATACGACACGAGTTCGAC 58.157 47.619 8.72 0.00 43.02 4.20
527 528 2.172365 GAATACGACACGAGTTCGACC 58.828 52.381 8.72 0.00 43.02 4.79
528 529 0.449388 ATACGACACGAGTTCGACCC 59.551 55.000 8.72 0.00 43.02 4.46
529 530 1.577328 TACGACACGAGTTCGACCCC 61.577 60.000 8.72 0.00 43.02 4.95
530 531 2.126580 GACACGAGTTCGACCCCG 60.127 66.667 8.72 0.00 43.02 5.73
531 532 2.595463 ACACGAGTTCGACCCCGA 60.595 61.111 8.72 0.00 43.96 5.14
532 533 2.178521 CACGAGTTCGACCCCGAG 59.821 66.667 8.72 0.00 46.39 4.63
533 534 2.282040 ACGAGTTCGACCCCGAGT 60.282 61.111 8.72 0.00 46.39 4.18
534 535 2.331132 ACGAGTTCGACCCCGAGTC 61.331 63.158 8.72 0.00 46.39 3.36
535 536 2.330372 CGAGTTCGACCCCGAGTCA 61.330 63.158 0.00 0.00 46.69 3.41
536 537 1.859427 CGAGTTCGACCCCGAGTCAA 61.859 60.000 0.00 0.00 46.69 3.18
537 538 0.388263 GAGTTCGACCCCGAGTCAAC 60.388 60.000 6.41 8.63 46.69 3.18
538 539 1.373873 GTTCGACCCCGAGTCAACC 60.374 63.158 6.41 0.00 46.69 3.77
539 540 2.576832 TTCGACCCCGAGTCAACCC 61.577 63.158 6.41 0.00 46.69 4.11
540 541 2.995574 CGACCCCGAGTCAACCCT 60.996 66.667 6.41 0.00 46.69 4.34
541 542 1.679977 CGACCCCGAGTCAACCCTA 60.680 63.158 6.41 0.00 46.69 3.53
542 543 1.664321 CGACCCCGAGTCAACCCTAG 61.664 65.000 6.41 0.00 46.69 3.02
543 544 1.305887 ACCCCGAGTCAACCCTAGG 60.306 63.158 0.06 0.06 0.00 3.02
544 545 2.732619 CCCCGAGTCAACCCTAGGC 61.733 68.421 2.05 0.00 0.00 3.93
545 546 1.987855 CCCGAGTCAACCCTAGGCA 60.988 63.158 2.05 0.00 0.00 4.75
546 547 1.218316 CCGAGTCAACCCTAGGCAC 59.782 63.158 2.05 0.00 0.00 5.01
547 548 1.218316 CGAGTCAACCCTAGGCACC 59.782 63.158 2.05 0.00 0.00 5.01
548 549 1.541310 CGAGTCAACCCTAGGCACCA 61.541 60.000 2.05 0.00 0.00 4.17
549 550 0.036294 GAGTCAACCCTAGGCACCAC 60.036 60.000 2.05 0.00 0.00 4.16
550 551 1.002502 GTCAACCCTAGGCACCACC 60.003 63.158 2.05 0.00 39.61 4.61
563 564 4.047125 CCACCTCACGGCCCCAAT 62.047 66.667 0.00 0.00 0.00 3.16
564 565 2.675242 CCACCTCACGGCCCCAATA 61.675 63.158 0.00 0.00 0.00 1.90
565 566 1.301623 CACCTCACGGCCCCAATAA 59.698 57.895 0.00 0.00 0.00 1.40
566 567 0.322997 CACCTCACGGCCCCAATAAA 60.323 55.000 0.00 0.00 0.00 1.40
567 568 0.629058 ACCTCACGGCCCCAATAAAT 59.371 50.000 0.00 0.00 0.00 1.40
568 569 1.318576 CCTCACGGCCCCAATAAATC 58.681 55.000 0.00 0.00 0.00 2.17
569 570 1.318576 CTCACGGCCCCAATAAATCC 58.681 55.000 0.00 0.00 0.00 3.01
570 571 0.106419 TCACGGCCCCAATAAATCCC 60.106 55.000 0.00 0.00 0.00 3.85
571 572 0.106217 CACGGCCCCAATAAATCCCT 60.106 55.000 0.00 0.00 0.00 4.20
572 573 0.185175 ACGGCCCCAATAAATCCCTC 59.815 55.000 0.00 0.00 0.00 4.30
573 574 0.539669 CGGCCCCAATAAATCCCTCC 60.540 60.000 0.00 0.00 0.00 4.30
574 575 0.539669 GGCCCCAATAAATCCCTCCG 60.540 60.000 0.00 0.00 0.00 4.63
575 576 0.539669 GCCCCAATAAATCCCTCCGG 60.540 60.000 0.00 0.00 0.00 5.14
576 577 0.112412 CCCCAATAAATCCCTCCGGG 59.888 60.000 0.00 0.00 46.11 5.73
577 578 0.539669 CCCAATAAATCCCTCCGGGC 60.540 60.000 0.00 0.00 43.94 6.13
578 579 0.889186 CCAATAAATCCCTCCGGGCG 60.889 60.000 0.00 0.00 43.94 6.13
579 580 0.107831 CAATAAATCCCTCCGGGCGA 59.892 55.000 0.00 0.00 43.94 5.54
580 581 0.841289 AATAAATCCCTCCGGGCGAA 59.159 50.000 0.00 0.00 43.94 4.70
581 582 0.108019 ATAAATCCCTCCGGGCGAAC 59.892 55.000 0.00 0.00 43.94 3.95
582 583 1.974973 TAAATCCCTCCGGGCGAACC 61.975 60.000 0.00 0.00 43.94 3.62
587 588 4.016706 CTCCGGGCGAACCAACCT 62.017 66.667 0.00 0.00 40.22 3.50
588 589 4.323477 TCCGGGCGAACCAACCTG 62.323 66.667 0.00 0.00 40.22 4.00
589 590 4.636435 CCGGGCGAACCAACCTGT 62.636 66.667 0.00 0.00 40.22 4.00
590 591 3.353836 CGGGCGAACCAACCTGTG 61.354 66.667 0.00 0.00 40.22 3.66
604 605 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
605 606 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
606 607 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
607 608 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
608 609 2.976185 TGTGGTTGAGATGGTTAGGTGA 59.024 45.455 0.00 0.00 0.00 4.02
609 610 3.392947 TGTGGTTGAGATGGTTAGGTGAA 59.607 43.478 0.00 0.00 0.00 3.18
610 611 3.751698 GTGGTTGAGATGGTTAGGTGAAC 59.248 47.826 0.00 0.00 37.31 3.18
611 612 3.392947 TGGTTGAGATGGTTAGGTGAACA 59.607 43.478 0.00 0.00 40.09 3.18
612 613 4.003648 GGTTGAGATGGTTAGGTGAACAG 58.996 47.826 0.00 0.00 40.09 3.16
613 614 4.505039 GGTTGAGATGGTTAGGTGAACAGT 60.505 45.833 0.00 0.00 40.09 3.55
614 615 4.271696 TGAGATGGTTAGGTGAACAGTG 57.728 45.455 0.00 0.00 40.09 3.66
615 616 3.007940 TGAGATGGTTAGGTGAACAGTGG 59.992 47.826 0.00 0.00 40.09 4.00
616 617 2.979678 AGATGGTTAGGTGAACAGTGGT 59.020 45.455 0.00 0.00 40.09 4.16
617 618 4.164981 AGATGGTTAGGTGAACAGTGGTA 58.835 43.478 0.00 0.00 40.09 3.25
618 619 4.783227 AGATGGTTAGGTGAACAGTGGTAT 59.217 41.667 0.00 0.00 40.09 2.73
619 620 4.546829 TGGTTAGGTGAACAGTGGTATC 57.453 45.455 0.00 0.00 40.09 2.24
620 621 3.262405 TGGTTAGGTGAACAGTGGTATCC 59.738 47.826 0.00 0.00 40.09 2.59
621 622 3.370209 GGTTAGGTGAACAGTGGTATCCC 60.370 52.174 0.00 0.00 40.09 3.85
622 623 1.286248 AGGTGAACAGTGGTATCCCC 58.714 55.000 0.00 0.00 0.00 4.81
623 624 0.107848 GGTGAACAGTGGTATCCCCG 60.108 60.000 0.00 0.00 35.15 5.73
624 625 0.899720 GTGAACAGTGGTATCCCCGA 59.100 55.000 0.00 0.00 35.15 5.14
625 626 0.899720 TGAACAGTGGTATCCCCGAC 59.100 55.000 0.00 0.00 35.15 4.79
626 627 0.177373 GAACAGTGGTATCCCCGACC 59.823 60.000 0.00 0.00 37.49 4.79
627 628 1.269703 AACAGTGGTATCCCCGACCC 61.270 60.000 0.00 0.00 35.99 4.46
628 629 1.687840 CAGTGGTATCCCCGACCCA 60.688 63.158 0.00 0.00 35.99 4.51
629 630 1.688187 AGTGGTATCCCCGACCCAC 60.688 63.158 0.00 0.00 46.17 4.61
630 631 2.365901 TGGTATCCCCGACCCACC 60.366 66.667 0.00 0.00 35.99 4.61
631 632 2.365901 GGTATCCCCGACCCACCA 60.366 66.667 0.00 0.00 0.00 4.17
632 633 2.440817 GGTATCCCCGACCCACCAG 61.441 68.421 0.00 0.00 0.00 4.00
633 634 2.041301 TATCCCCGACCCACCAGG 60.041 66.667 0.00 0.00 43.78 4.45
649 650 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
650 651 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
651 652 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
652 653 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
653 654 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
654 655 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
655 656 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
656 657 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
657 658 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
658 659 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
659 660 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
660 661 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
661 662 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
662 663 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
663 664 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
664 665 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
665 666 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
666 667 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
667 668 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
668 669 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
669 670 5.008613 GGTGCTCGCATTATTTCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
670 671 6.294176 GGTGCTCGCATTATTTCTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
671 672 7.141363 GTGCTCGCATTATTTCTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
672 673 7.649306 GTGCTCGCATTATTTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
673 674 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
674 675 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
675 676 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
676 677 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
677 678 8.352201 CGCATTATTTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
683 684 6.942532 TCTGGATTTATTTCAGGATTTCCG 57.057 37.500 0.00 0.00 42.08 4.30
684 685 5.827797 TCTGGATTTATTTCAGGATTTCCGG 59.172 40.000 0.00 0.00 42.08 5.14
685 686 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
686 687 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
687 688 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
688 689 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
689 690 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
690 691 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
691 692 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
702 703 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
703 704 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
704 705 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
705 706 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
706 707 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
707 708 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
708 709 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
709 710 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
710 711 0.687354 GCTTTCAGTGGGAGGAGACA 59.313 55.000 0.00 0.00 0.00 3.41
711 712 1.280421 GCTTTCAGTGGGAGGAGACAT 59.720 52.381 0.00 0.00 0.00 3.06
712 713 2.290577 GCTTTCAGTGGGAGGAGACATT 60.291 50.000 0.00 0.00 0.00 2.71
713 714 3.812167 GCTTTCAGTGGGAGGAGACATTT 60.812 47.826 0.00 0.00 0.00 2.32
714 715 4.401925 CTTTCAGTGGGAGGAGACATTTT 58.598 43.478 0.00 0.00 0.00 1.82
715 716 3.703001 TCAGTGGGAGGAGACATTTTC 57.297 47.619 0.00 0.00 0.00 2.29
716 717 2.978978 TCAGTGGGAGGAGACATTTTCA 59.021 45.455 0.00 0.00 0.00 2.69
717 718 3.588842 TCAGTGGGAGGAGACATTTTCAT 59.411 43.478 0.00 0.00 0.00 2.57
718 719 3.944015 CAGTGGGAGGAGACATTTTCATC 59.056 47.826 0.00 0.00 0.00 2.92
719 720 2.939103 GTGGGAGGAGACATTTTCATCG 59.061 50.000 0.00 0.00 0.00 3.84
720 721 2.837591 TGGGAGGAGACATTTTCATCGA 59.162 45.455 0.00 0.00 0.00 3.59
721 722 3.198872 GGGAGGAGACATTTTCATCGAC 58.801 50.000 0.00 0.00 0.00 4.20
722 723 2.860735 GGAGGAGACATTTTCATCGACG 59.139 50.000 0.00 0.00 0.00 5.12
723 724 3.428999 GGAGGAGACATTTTCATCGACGA 60.429 47.826 0.00 0.00 0.00 4.20
724 725 3.512680 AGGAGACATTTTCATCGACGAC 58.487 45.455 0.00 0.00 0.00 4.34
725 726 2.279136 GGAGACATTTTCATCGACGACG 59.721 50.000 0.00 0.00 41.26 5.12
736 737 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
739 740 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
741 742 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
744 745 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
745 746 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
746 747 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
747 748 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
748 749 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
749 750 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
750 751 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
751 752 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
752 753 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
753 754 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
754 755 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
755 756 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
756 757 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
757 758 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
758 759 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
759 760 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
760 761 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
761 762 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
762 763 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
763 764 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
764 765 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
765 766 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
766 767 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
767 768 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
768 769 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
769 770 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
770 771 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
771 772 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
772 773 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
773 774 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
774 775 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
775 776 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
776 777 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
777 778 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
778 779 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
779 780 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
780 781 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
781 782 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
782 783 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
783 784 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
784 785 1.431440 CGGCTCAGTCTCTCGAAGG 59.569 63.158 0.00 0.00 0.00 3.46
785 786 1.309499 CGGCTCAGTCTCTCGAAGGT 61.309 60.000 0.00 0.00 0.00 3.50
786 787 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
787 788 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
788 789 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
789 790 1.132262 CTCAGTCTCTCGAAGGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
790 791 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
791 792 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
792 793 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
793 794 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
794 795 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
795 796 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
796 797 0.390860 CTCGAAGGTGCTCATAGGGG 59.609 60.000 0.00 0.00 0.00 4.79
797 798 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
798 799 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
799 800 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
800 801 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
801 802 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
802 803 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
803 804 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
804 805 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
805 806 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
806 807 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
807 808 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
808 809 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
809 810 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
810 811 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
811 812 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
812 813 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
813 814 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
814 815 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
817 818 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
818 819 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
819 820 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
820 821 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
821 822 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
822 823 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
823 824 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
824 825 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
825 826 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
826 827 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
827 828 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
828 829 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
829 830 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
830 831 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
831 832 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
832 833 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
833 834 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
834 835 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
835 836 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
836 837 4.501571 GCGTTCATAGGGATGAGTGTATGT 60.502 45.833 0.00 0.00 43.03 2.29
837 838 4.984785 CGTTCATAGGGATGAGTGTATGTG 59.015 45.833 0.00 0.00 43.03 3.21
838 839 4.607293 TCATAGGGATGAGTGTATGTGC 57.393 45.455 0.00 0.00 37.15 4.57
839 840 3.005791 TCATAGGGATGAGTGTATGTGCG 59.994 47.826 0.00 0.00 37.15 5.34
840 841 1.195115 AGGGATGAGTGTATGTGCGT 58.805 50.000 0.00 0.00 0.00 5.24
841 842 1.134699 AGGGATGAGTGTATGTGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
842 843 1.405526 GGGATGAGTGTATGTGCGTGT 60.406 52.381 0.00 0.00 0.00 4.49
843 844 2.159156 GGGATGAGTGTATGTGCGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
844 845 3.492656 GGGATGAGTGTATGTGCGTGTAT 60.493 47.826 0.00 0.00 0.00 2.29
845 846 4.261867 GGGATGAGTGTATGTGCGTGTATA 60.262 45.833 0.00 0.00 0.00 1.47
846 847 5.470368 GGATGAGTGTATGTGCGTGTATAT 58.530 41.667 0.00 0.00 0.00 0.86
847 848 5.346011 GGATGAGTGTATGTGCGTGTATATG 59.654 44.000 0.00 0.00 0.00 1.78
848 849 5.508200 TGAGTGTATGTGCGTGTATATGA 57.492 39.130 0.00 0.00 0.00 2.15
849 850 5.519722 TGAGTGTATGTGCGTGTATATGAG 58.480 41.667 0.00 0.00 0.00 2.90
850 851 4.299155 AGTGTATGTGCGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
851 852 3.119628 GTGTATGTGCGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
856 857 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
857 858 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
858 859 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
859 860 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
860 861 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
861 862 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
862 863 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
863 864 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
864 865 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
865 866 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
866 867 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
867 868 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
868 869 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
869 870 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
870 871 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
871 872 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
872 873 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
873 874 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
874 875 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
875 876 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
876 877 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
896 901 0.188834 AAAAATCCACCCGGTTCCCA 59.811 50.000 0.00 0.00 0.00 4.37
907 913 2.283173 GTTCCCAACCCAGCCCAG 60.283 66.667 0.00 0.00 0.00 4.45
911 917 4.601794 CCAACCCAGCCCAGCACA 62.602 66.667 0.00 0.00 0.00 4.57
912 918 3.297620 CAACCCAGCCCAGCACAC 61.298 66.667 0.00 0.00 0.00 3.82
926 932 0.931662 GCACACACGCAAAGAAGCTG 60.932 55.000 0.00 0.00 0.00 4.24
929 935 0.029834 CACACGCAAAGAAGCTGCTT 59.970 50.000 15.92 15.92 37.67 3.91
944 959 4.697756 CTTTGTCTCCCGCCGCCA 62.698 66.667 0.00 0.00 0.00 5.69
954 971 2.426752 CGCCGCCACGTCTTTTTG 60.427 61.111 0.00 0.00 0.00 2.44
955 972 2.729491 GCCGCCACGTCTTTTTGC 60.729 61.111 0.00 0.00 0.00 3.68
956 973 3.030652 CCGCCACGTCTTTTTGCT 58.969 55.556 0.00 0.00 0.00 3.91
957 974 1.847890 GCCGCCACGTCTTTTTGCTA 61.848 55.000 0.00 0.00 0.00 3.49
961 978 2.477375 CGCCACGTCTTTTTGCTACTAA 59.523 45.455 0.00 0.00 0.00 2.24
1064 1085 0.895530 TCGGACAGCGAGGAATTTCT 59.104 50.000 0.00 0.00 0.00 2.52
1065 1086 1.275291 TCGGACAGCGAGGAATTTCTT 59.725 47.619 0.00 0.00 0.00 2.52
1095 1116 0.321564 CGGTTGCCATGGAGTCTCAA 60.322 55.000 18.40 6.80 0.00 3.02
1102 1123 2.356535 GCCATGGAGTCTCAAACCATCT 60.357 50.000 18.40 0.00 41.68 2.90
1153 1174 2.361104 GCATCCCGCTTCCCAACA 60.361 61.111 0.00 0.00 37.77 3.33
1155 1176 1.322538 GCATCCCGCTTCCCAACATT 61.323 55.000 0.00 0.00 37.77 2.71
1160 1181 0.523072 CCGCTTCCCAACATTGACTG 59.477 55.000 0.00 0.00 0.00 3.51
1229 1250 4.653888 CCCCAAACCGGCCGACTT 62.654 66.667 30.73 16.70 0.00 3.01
1262 1286 0.978146 GCCAGCTCCTCCACCTCTAA 60.978 60.000 0.00 0.00 0.00 2.10
1270 1294 0.543277 CTCCACCTCTAATGCAGCCA 59.457 55.000 0.00 0.00 0.00 4.75
1303 1327 2.050144 AGGACCTCAAGAGCTTTGACA 58.950 47.619 7.09 0.00 0.00 3.58
1306 1330 1.490490 ACCTCAAGAGCTTTGACACCA 59.510 47.619 7.09 0.00 0.00 4.17
1307 1331 2.092429 ACCTCAAGAGCTTTGACACCAA 60.092 45.455 7.09 0.00 0.00 3.67
1308 1332 3.152341 CCTCAAGAGCTTTGACACCAAT 58.848 45.455 7.09 0.00 31.46 3.16
1309 1333 4.202461 ACCTCAAGAGCTTTGACACCAATA 60.202 41.667 7.09 0.00 31.46 1.90
1321 1345 4.951254 TGACACCAATAGAGTTCGTCAAA 58.049 39.130 0.00 0.00 0.00 2.69
1336 1360 1.071471 CAAAGTCGACCAGGCCACT 59.929 57.895 13.01 0.00 0.00 4.00
1361 1385 1.520342 GACCTCATCCTCGCTGCAC 60.520 63.158 0.00 0.00 0.00 4.57
1445 1469 0.340208 AAAGACCCCCGAGGAGATCT 59.660 55.000 0.00 0.00 39.89 2.75
1542 1567 6.591834 GCTTTTGAGTAGAGAAGACAAGCATA 59.408 38.462 0.00 0.00 0.00 3.14
1582 1607 1.859998 GCGTGAACTTGTTCCTTGCAC 60.860 52.381 10.51 2.50 0.00 4.57
1711 1737 4.207955 TCTGATACCATCTTGTAGCGACT 58.792 43.478 0.00 0.00 29.82 4.18
1769 1795 2.481441 TCCCTGGATCAGTAATGCTGT 58.519 47.619 0.00 0.00 45.23 4.40
1847 1873 4.917998 TCGAATGTCTCAAAAGAGAACTCG 59.082 41.667 12.27 12.27 36.42 4.18
1919 1946 5.189180 GCTTGGAAGATAAGTGAGTCCATT 58.811 41.667 0.00 0.00 38.16 3.16
2009 2036 1.106351 AACATGAACGTTGCAGCCCA 61.106 50.000 5.00 0.00 0.00 5.36
2101 2130 6.566079 ACTATATGCATATATGGCTGGTGT 57.434 37.500 23.42 13.83 32.63 4.16
2123 2152 7.360946 GGTGTAAAGCTCTATGGTTACAGTTTG 60.361 40.741 6.66 0.00 35.02 2.93
2138 2167 5.720371 ACAGTTTGTGCATAAAGCCAATA 57.280 34.783 9.07 0.00 44.83 1.90
2460 2491 5.012328 GGATGACCGAGACATAGTCTTTT 57.988 43.478 0.70 0.00 43.53 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 4.043435 AGCTTTCATCCAGGAGTTAAACCT 59.957 41.667 0.00 0.00 38.40 3.50
89 90 4.156739 CAGCTTTCATCCAGGAGTTAAACC 59.843 45.833 0.00 0.00 0.00 3.27
99 100 3.861276 TCAATTGCAGCTTTCATCCAG 57.139 42.857 0.00 0.00 0.00 3.86
153 154 4.467084 GGTGGGCGCCGAGATGAA 62.467 66.667 22.54 0.00 0.00 2.57
163 164 2.332063 ATCTACAAGATTGGTGGGCG 57.668 50.000 0.00 0.00 28.69 6.13
249 250 3.072476 CACCAACCTGGAGTCTAGGAAAA 59.928 47.826 27.89 0.00 40.96 2.29
272 273 4.133078 GCCCATAGAGTTCTCCTTTGATG 58.867 47.826 0.00 0.00 0.00 3.07
282 283 4.125703 CTGTCATTGAGCCCATAGAGTTC 58.874 47.826 0.00 0.00 0.00 3.01
284 285 2.437281 CCTGTCATTGAGCCCATAGAGT 59.563 50.000 0.00 0.00 0.00 3.24
298 299 0.615331 AGGACGTTCATGCCTGTCAT 59.385 50.000 0.00 3.69 35.31 3.06
303 304 0.036010 CAGGAAGGACGTTCATGCCT 60.036 55.000 9.31 0.00 39.91 4.75
332 333 1.065199 AGGAGCGCTGGATGATTCAAA 60.065 47.619 18.48 0.00 0.00 2.69
365 366 3.387947 CCGGGACCTACAACGCCT 61.388 66.667 0.00 0.00 0.00 5.52
407 408 6.270231 ACACCTGAAGGAAGTCACTAAGTATT 59.730 38.462 2.62 0.00 38.94 1.89
444 445 5.247792 AGTTCCCGTTTCCATCTTTACTACT 59.752 40.000 0.00 0.00 0.00 2.57
446 447 5.750352 AGTTCCCGTTTCCATCTTTACTA 57.250 39.130 0.00 0.00 0.00 1.82
447 448 4.635699 AGTTCCCGTTTCCATCTTTACT 57.364 40.909 0.00 0.00 0.00 2.24
448 449 5.485620 ACTAGTTCCCGTTTCCATCTTTAC 58.514 41.667 0.00 0.00 0.00 2.01
449 450 5.750352 ACTAGTTCCCGTTTCCATCTTTA 57.250 39.130 0.00 0.00 0.00 1.85
450 451 4.635699 ACTAGTTCCCGTTTCCATCTTT 57.364 40.909 0.00 0.00 0.00 2.52
451 452 4.776308 AGTACTAGTTCCCGTTTCCATCTT 59.224 41.667 0.00 0.00 0.00 2.40
452 453 4.351127 AGTACTAGTTCCCGTTTCCATCT 58.649 43.478 0.00 0.00 0.00 2.90
453 454 4.732672 AGTACTAGTTCCCGTTTCCATC 57.267 45.455 0.00 0.00 0.00 3.51
454 455 5.513233 TCTAGTACTAGTTCCCGTTTCCAT 58.487 41.667 25.58 0.00 34.84 3.41
455 456 4.922206 TCTAGTACTAGTTCCCGTTTCCA 58.078 43.478 25.58 3.06 34.84 3.53
456 457 4.337836 CCTCTAGTACTAGTTCCCGTTTCC 59.662 50.000 25.58 0.00 34.84 3.13
457 458 5.189180 TCCTCTAGTACTAGTTCCCGTTTC 58.811 45.833 25.58 0.00 34.84 2.78
458 459 5.184892 TCCTCTAGTACTAGTTCCCGTTT 57.815 43.478 25.58 0.00 34.84 3.60
459 460 4.385088 CCTCCTCTAGTACTAGTTCCCGTT 60.385 50.000 25.58 0.00 34.84 4.44
460 461 3.136260 CCTCCTCTAGTACTAGTTCCCGT 59.864 52.174 25.58 0.00 34.84 5.28
461 462 3.742385 CCTCCTCTAGTACTAGTTCCCG 58.258 54.545 25.58 13.33 34.84 5.14
462 463 3.489355 GCCTCCTCTAGTACTAGTTCCC 58.511 54.545 25.58 9.94 34.84 3.97
463 464 3.489355 GGCCTCCTCTAGTACTAGTTCC 58.511 54.545 25.58 15.53 34.84 3.62
464 465 3.140623 CGGCCTCCTCTAGTACTAGTTC 58.859 54.545 25.58 11.56 34.84 3.01
465 466 2.158638 CCGGCCTCCTCTAGTACTAGTT 60.159 54.545 25.58 0.00 34.84 2.24
466 467 1.420891 CCGGCCTCCTCTAGTACTAGT 59.579 57.143 25.58 0.00 34.84 2.57
467 468 1.271488 CCCGGCCTCCTCTAGTACTAG 60.271 61.905 21.87 21.87 34.56 2.57
468 469 0.769873 CCCGGCCTCCTCTAGTACTA 59.230 60.000 0.00 1.89 0.00 1.82
469 470 1.537669 CCCGGCCTCCTCTAGTACT 59.462 63.158 0.00 0.00 0.00 2.73
470 471 2.201708 GCCCGGCCTCCTCTAGTAC 61.202 68.421 0.00 0.00 0.00 2.73
471 472 2.197875 GCCCGGCCTCCTCTAGTA 59.802 66.667 0.00 0.00 0.00 1.82
472 473 4.862823 GGCCCGGCCTCCTCTAGT 62.863 72.222 22.31 0.00 46.69 2.57
482 483 4.176752 CTAGGAGTTGGGCCCGGC 62.177 72.222 19.37 12.69 0.00 6.13
483 484 4.176752 GCTAGGAGTTGGGCCCGG 62.177 72.222 19.37 0.00 0.00 5.73
484 485 2.478335 TTTGCTAGGAGTTGGGCCCG 62.478 60.000 19.37 0.00 0.00 6.13
485 486 0.681243 CTTTGCTAGGAGTTGGGCCC 60.681 60.000 17.59 17.59 0.00 5.80
486 487 0.328258 TCTTTGCTAGGAGTTGGGCC 59.672 55.000 0.00 0.00 0.00 5.80
487 488 2.019984 CATCTTTGCTAGGAGTTGGGC 58.980 52.381 0.00 0.00 0.00 5.36
488 489 3.634397 TCATCTTTGCTAGGAGTTGGG 57.366 47.619 0.00 0.00 0.00 4.12
489 490 5.235186 CGTATTCATCTTTGCTAGGAGTTGG 59.765 44.000 0.00 0.00 0.00 3.77
490 491 6.019479 GTCGTATTCATCTTTGCTAGGAGTTG 60.019 42.308 0.00 0.00 0.00 3.16
491 492 6.043411 GTCGTATTCATCTTTGCTAGGAGTT 58.957 40.000 0.00 0.00 0.00 3.01
492 493 5.127194 TGTCGTATTCATCTTTGCTAGGAGT 59.873 40.000 0.00 0.00 0.00 3.85
493 494 5.460419 GTGTCGTATTCATCTTTGCTAGGAG 59.540 44.000 0.00 0.00 0.00 3.69
494 495 5.348986 GTGTCGTATTCATCTTTGCTAGGA 58.651 41.667 0.00 0.00 0.00 2.94
495 496 4.207224 CGTGTCGTATTCATCTTTGCTAGG 59.793 45.833 0.00 0.00 0.00 3.02
496 497 5.034797 TCGTGTCGTATTCATCTTTGCTAG 58.965 41.667 0.00 0.00 0.00 3.42
497 498 4.989044 TCGTGTCGTATTCATCTTTGCTA 58.011 39.130 0.00 0.00 0.00 3.49
498 499 3.845178 TCGTGTCGTATTCATCTTTGCT 58.155 40.909 0.00 0.00 0.00 3.91
499 500 3.612860 ACTCGTGTCGTATTCATCTTTGC 59.387 43.478 0.00 0.00 0.00 3.68
500 501 5.497126 CGAACTCGTGTCGTATTCATCTTTG 60.497 44.000 0.00 0.00 34.11 2.77
501 502 4.557690 CGAACTCGTGTCGTATTCATCTTT 59.442 41.667 0.00 0.00 34.11 2.52
502 503 4.096311 CGAACTCGTGTCGTATTCATCTT 58.904 43.478 0.00 0.00 34.11 2.40
503 504 3.373130 TCGAACTCGTGTCGTATTCATCT 59.627 43.478 0.00 0.00 40.80 2.90
504 505 3.477802 GTCGAACTCGTGTCGTATTCATC 59.522 47.826 0.00 0.00 40.80 2.92
505 506 3.423571 GTCGAACTCGTGTCGTATTCAT 58.576 45.455 0.00 0.00 40.80 2.57
506 507 2.413239 GGTCGAACTCGTGTCGTATTCA 60.413 50.000 0.00 0.00 40.80 2.57
507 508 2.172365 GGTCGAACTCGTGTCGTATTC 58.828 52.381 0.00 0.00 40.80 1.75
508 509 1.135575 GGGTCGAACTCGTGTCGTATT 60.136 52.381 0.00 0.00 40.80 1.89
509 510 0.449388 GGGTCGAACTCGTGTCGTAT 59.551 55.000 0.00 0.00 40.80 3.06
510 511 1.577328 GGGGTCGAACTCGTGTCGTA 61.577 60.000 0.00 0.00 40.80 3.43
511 512 2.641559 GGGTCGAACTCGTGTCGT 59.358 61.111 0.00 0.00 40.80 4.34
512 513 2.126580 GGGGTCGAACTCGTGTCG 60.127 66.667 0.00 0.00 40.80 4.35
513 514 2.126580 CGGGGTCGAACTCGTGTC 60.127 66.667 16.33 0.00 40.80 3.67
514 515 2.595463 TCGGGGTCGAACTCGTGT 60.595 61.111 24.17 0.00 43.03 4.49
515 516 2.178521 CTCGGGGTCGAACTCGTG 59.821 66.667 24.17 17.43 45.47 4.35
516 517 2.282040 ACTCGGGGTCGAACTCGT 60.282 61.111 24.17 0.00 45.47 4.18
517 518 2.484203 GACTCGGGGTCGAACTCG 59.516 66.667 18.83 18.83 45.47 4.18
524 525 1.328430 CCTAGGGTTGACTCGGGGTC 61.328 65.000 0.00 0.00 44.70 4.46
525 526 1.305887 CCTAGGGTTGACTCGGGGT 60.306 63.158 0.00 0.00 0.00 4.95
526 527 2.732619 GCCTAGGGTTGACTCGGGG 61.733 68.421 11.72 0.00 0.00 5.73
527 528 1.987855 TGCCTAGGGTTGACTCGGG 60.988 63.158 11.72 0.00 0.00 5.14
528 529 1.218316 GTGCCTAGGGTTGACTCGG 59.782 63.158 11.72 0.00 0.00 4.63
529 530 1.218316 GGTGCCTAGGGTTGACTCG 59.782 63.158 11.72 0.00 0.00 4.18
530 531 0.036294 GTGGTGCCTAGGGTTGACTC 60.036 60.000 11.72 0.00 0.00 3.36
531 532 1.489560 GGTGGTGCCTAGGGTTGACT 61.490 60.000 11.72 0.00 0.00 3.41
532 533 1.002502 GGTGGTGCCTAGGGTTGAC 60.003 63.158 11.72 0.00 0.00 3.18
533 534 3.490851 GGTGGTGCCTAGGGTTGA 58.509 61.111 11.72 0.00 0.00 3.18
550 551 1.318576 GGATTTATTGGGGCCGTGAG 58.681 55.000 0.00 0.00 0.00 3.51
551 552 0.106419 GGGATTTATTGGGGCCGTGA 60.106 55.000 0.00 0.00 0.00 4.35
552 553 0.106217 AGGGATTTATTGGGGCCGTG 60.106 55.000 0.00 0.00 0.00 4.94
553 554 0.185175 GAGGGATTTATTGGGGCCGT 59.815 55.000 0.00 0.00 0.00 5.68
554 555 0.539669 GGAGGGATTTATTGGGGCCG 60.540 60.000 0.00 0.00 0.00 6.13
555 556 0.539669 CGGAGGGATTTATTGGGGCC 60.540 60.000 0.00 0.00 0.00 5.80
556 557 3.036431 CGGAGGGATTTATTGGGGC 57.964 57.895 0.00 0.00 0.00 5.80
570 571 4.016706 AGGTTGGTTCGCCCGGAG 62.017 66.667 0.73 0.00 36.08 4.63
571 572 4.323477 CAGGTTGGTTCGCCCGGA 62.323 66.667 0.73 0.00 36.08 5.14
572 573 4.636435 ACAGGTTGGTTCGCCCGG 62.636 66.667 0.00 0.00 36.08 5.73
573 574 3.353836 CACAGGTTGGTTCGCCCG 61.354 66.667 0.00 0.00 36.08 6.13
574 575 2.983592 CCACAGGTTGGTTCGCCC 60.984 66.667 0.00 0.00 41.10 6.13
584 585 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
585 586 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
586 587 3.007940 TCACCTAACCATCTCAACCACAG 59.992 47.826 0.00 0.00 0.00 3.66
587 588 2.976185 TCACCTAACCATCTCAACCACA 59.024 45.455 0.00 0.00 0.00 4.17
588 589 3.695830 TCACCTAACCATCTCAACCAC 57.304 47.619 0.00 0.00 0.00 4.16
589 590 3.392947 TGTTCACCTAACCATCTCAACCA 59.607 43.478 0.00 0.00 37.27 3.67
590 591 4.003648 CTGTTCACCTAACCATCTCAACC 58.996 47.826 0.00 0.00 37.27 3.77
591 592 4.452455 CACTGTTCACCTAACCATCTCAAC 59.548 45.833 0.00 0.00 37.27 3.18
592 593 4.504864 CCACTGTTCACCTAACCATCTCAA 60.505 45.833 0.00 0.00 37.27 3.02
593 594 3.007940 CCACTGTTCACCTAACCATCTCA 59.992 47.826 0.00 0.00 37.27 3.27
594 595 3.008049 ACCACTGTTCACCTAACCATCTC 59.992 47.826 0.00 0.00 37.27 2.75
595 596 2.979678 ACCACTGTTCACCTAACCATCT 59.020 45.455 0.00 0.00 37.27 2.90
596 597 3.418684 ACCACTGTTCACCTAACCATC 57.581 47.619 0.00 0.00 37.27 3.51
597 598 4.080526 GGATACCACTGTTCACCTAACCAT 60.081 45.833 0.00 0.00 37.27 3.55
598 599 3.262405 GGATACCACTGTTCACCTAACCA 59.738 47.826 0.00 0.00 37.27 3.67
599 600 3.870274 GGATACCACTGTTCACCTAACC 58.130 50.000 0.00 0.00 37.27 2.85
615 616 2.440817 CCTGGTGGGTCGGGGATAC 61.441 68.421 0.00 0.00 0.00 2.24
616 617 2.041301 CCTGGTGGGTCGGGGATA 60.041 66.667 0.00 0.00 0.00 2.59
626 627 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
631 632 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
632 633 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
633 634 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
634 635 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
635 636 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
636 637 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
637 638 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
638 639 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
639 640 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
640 641 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
641 642 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
642 643 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
643 644 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
644 645 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
645 646 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
646 647 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
647 648 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
648 649 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
649 650 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
650 651 8.352201 CCTGAAATAAATCCAGAAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
651 652 8.352201 TCCTGAAATAAATCCAGAAATAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
657 658 8.416329 CGGAAATCCTGAAATAAATCCAGAAAT 58.584 33.333 0.00 0.00 0.00 2.17
658 659 7.147915 CCGGAAATCCTGAAATAAATCCAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
659 660 6.321181 CCGGAAATCCTGAAATAAATCCAGAA 59.679 38.462 0.00 0.00 0.00 3.02
660 661 5.827797 CCGGAAATCCTGAAATAAATCCAGA 59.172 40.000 0.00 0.00 0.00 3.86
661 662 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
662 663 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
663 664 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
664 665 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
665 666 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
666 667 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
667 668 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
668 669 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
669 670 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
670 671 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
671 672 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
672 673 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
673 674 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
674 675 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
685 686 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
686 687 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
687 688 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
688 689 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
689 690 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
690 691 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
691 692 0.687354 TGTCTCCTCCCACTGAAAGC 59.313 55.000 0.00 0.00 37.60 3.51
692 693 3.710209 AATGTCTCCTCCCACTGAAAG 57.290 47.619 0.00 0.00 42.29 2.62
693 694 4.141274 TGAAAATGTCTCCTCCCACTGAAA 60.141 41.667 0.00 0.00 0.00 2.69
694 695 3.394274 TGAAAATGTCTCCTCCCACTGAA 59.606 43.478 0.00 0.00 0.00 3.02
695 696 2.978978 TGAAAATGTCTCCTCCCACTGA 59.021 45.455 0.00 0.00 0.00 3.41
696 697 3.423539 TGAAAATGTCTCCTCCCACTG 57.576 47.619 0.00 0.00 0.00 3.66
697 698 3.369892 CGATGAAAATGTCTCCTCCCACT 60.370 47.826 0.00 0.00 0.00 4.00
698 699 2.939103 CGATGAAAATGTCTCCTCCCAC 59.061 50.000 0.00 0.00 0.00 4.61
699 700 2.837591 TCGATGAAAATGTCTCCTCCCA 59.162 45.455 0.00 0.00 0.00 4.37
700 701 3.198872 GTCGATGAAAATGTCTCCTCCC 58.801 50.000 0.00 0.00 0.00 4.30
701 702 2.860735 CGTCGATGAAAATGTCTCCTCC 59.139 50.000 0.00 0.00 0.00 4.30
702 703 3.548268 GTCGTCGATGAAAATGTCTCCTC 59.452 47.826 9.35 0.00 0.00 3.71
703 704 3.512680 GTCGTCGATGAAAATGTCTCCT 58.487 45.455 9.35 0.00 0.00 3.69
704 705 2.279136 CGTCGTCGATGAAAATGTCTCC 59.721 50.000 9.35 0.00 39.71 3.71
705 706 3.168963 TCGTCGTCGATGAAAATGTCTC 58.831 45.455 14.68 0.00 41.35 3.36
706 707 3.172050 CTCGTCGTCGATGAAAATGTCT 58.828 45.455 17.41 0.00 45.21 3.41
707 708 2.279136 CCTCGTCGTCGATGAAAATGTC 59.721 50.000 17.41 0.00 45.21 3.06
708 709 2.259618 CCTCGTCGTCGATGAAAATGT 58.740 47.619 17.41 0.00 45.21 2.71
709 710 1.005975 GCCTCGTCGTCGATGAAAATG 60.006 52.381 17.41 6.54 45.21 2.32
710 711 1.278238 GCCTCGTCGTCGATGAAAAT 58.722 50.000 17.41 0.00 45.21 1.82
711 712 1.068832 CGCCTCGTCGTCGATGAAAA 61.069 55.000 17.41 0.00 45.21 2.29
712 713 1.513373 CGCCTCGTCGTCGATGAAA 60.513 57.895 17.41 0.00 45.21 2.69
713 714 2.099638 CGCCTCGTCGTCGATGAA 59.900 61.111 17.41 3.08 45.21 2.57
714 715 4.531912 GCGCCTCGTCGTCGATGA 62.532 66.667 16.02 16.02 45.21 2.92
718 719 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
719 720 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
732 733 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
733 734 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
734 735 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
735 736 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
736 737 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
737 738 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
738 739 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
739 740 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
740 741 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
741 742 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
742 743 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
743 744 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
744 745 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
745 746 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
746 747 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
747 748 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
748 749 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
749 750 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
750 751 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
751 752 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
752 753 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
753 754 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
754 755 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
755 756 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
756 757 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
757 758 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
758 759 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
759 760 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
760 761 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
761 762 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
762 763 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
763 764 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
764 765 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
765 766 1.431440 CTTCGAGAGACTGAGCCGG 59.569 63.158 0.00 0.00 41.84 6.13
766 767 1.309499 ACCTTCGAGAGACTGAGCCG 61.309 60.000 0.00 0.00 41.84 5.52
767 768 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
768 769 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
769 770 1.132262 GAGCACCTTCGAGAGACTGAG 59.868 57.143 0.00 0.00 41.84 3.35
770 771 1.169577 GAGCACCTTCGAGAGACTGA 58.830 55.000 0.00 0.00 41.84 3.41
771 772 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
772 773 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
773 774 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
774 775 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
775 776 1.339610 CCCTATGAGCACCTTCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
776 777 1.403814 CCCTATGAGCACCTTCGAGA 58.596 55.000 0.00 0.00 0.00 4.04
777 778 0.390860 CCCCTATGAGCACCTTCGAG 59.609 60.000 0.00 0.00 0.00 4.04
778 779 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
779 780 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
780 781 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
781 782 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
782 783 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
783 784 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
784 785 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
785 786 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
786 787 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
787 788 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
788 789 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
789 790 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
790 791 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
791 792 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
792 793 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
793 794 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
794 795 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
795 796 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
796 797 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
797 798 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
800 801 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
801 802 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
802 803 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
803 804 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
804 805 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
805 806 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
806 807 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
807 808 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
808 809 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
809 810 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
810 811 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
811 812 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
812 813 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
813 814 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
814 815 4.984785 CACATACACTCATCCCTATGAACG 59.015 45.833 0.00 0.00 41.57 3.95
815 816 4.752101 GCACATACACTCATCCCTATGAAC 59.248 45.833 0.00 0.00 41.57 3.18
816 817 4.501400 CGCACATACACTCATCCCTATGAA 60.501 45.833 0.00 0.00 41.57 2.57
817 818 3.005791 CGCACATACACTCATCCCTATGA 59.994 47.826 0.00 0.00 39.87 2.15
818 819 3.243873 ACGCACATACACTCATCCCTATG 60.244 47.826 0.00 0.00 0.00 2.23
819 820 2.965831 ACGCACATACACTCATCCCTAT 59.034 45.455 0.00 0.00 0.00 2.57
820 821 2.100749 CACGCACATACACTCATCCCTA 59.899 50.000 0.00 0.00 0.00 3.53
821 822 1.134699 CACGCACATACACTCATCCCT 60.135 52.381 0.00 0.00 0.00 4.20
822 823 1.290203 CACGCACATACACTCATCCC 58.710 55.000 0.00 0.00 0.00 3.85
823 824 2.010145 ACACGCACATACACTCATCC 57.990 50.000 0.00 0.00 0.00 3.51
824 825 6.149633 TCATATACACGCACATACACTCATC 58.850 40.000 0.00 0.00 0.00 2.92
825 826 6.084326 TCATATACACGCACATACACTCAT 57.916 37.500 0.00 0.00 0.00 2.90
826 827 5.508200 TCATATACACGCACATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
827 828 4.383052 GCTCATATACACGCACATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
828 829 4.299155 GCTCATATACACGCACATACACT 58.701 43.478 0.00 0.00 0.00 3.55
829 830 3.119628 CGCTCATATACACGCACATACAC 59.880 47.826 0.00 0.00 0.00 2.90
830 831 3.305110 CGCTCATATACACGCACATACA 58.695 45.455 0.00 0.00 0.00 2.29
831 832 3.954030 CGCTCATATACACGCACATAC 57.046 47.619 0.00 0.00 0.00 2.39
838 839 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
839 840 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
840 841 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
841 842 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
842 843 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
843 844 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
844 845 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
845 846 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
846 847 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
847 848 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
848 849 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
849 850 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
850 851 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
851 852 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
852 853 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
896 901 3.819652 TGTGTGCTGGGCTGGGTT 61.820 61.111 0.00 0.00 0.00 4.11
907 913 0.931662 CAGCTTCTTTGCGTGTGTGC 60.932 55.000 0.00 0.00 38.13 4.57
911 917 0.740737 AAAGCAGCTTCTTTGCGTGT 59.259 45.000 10.70 0.00 45.98 4.49
912 918 1.126079 CAAAGCAGCTTCTTTGCGTG 58.874 50.000 22.81 3.75 44.11 5.34
944 959 6.370718 CCTGGTTATTAGTAGCAAAAAGACGT 59.629 38.462 0.00 0.00 0.00 4.34
954 971 4.763073 ACGAAACCCTGGTTATTAGTAGC 58.237 43.478 1.21 0.00 37.35 3.58
955 972 6.035327 CGAAACGAAACCCTGGTTATTAGTAG 59.965 42.308 1.21 0.00 37.35 2.57
956 973 5.868801 CGAAACGAAACCCTGGTTATTAGTA 59.131 40.000 1.21 0.00 37.35 1.82
957 974 4.692155 CGAAACGAAACCCTGGTTATTAGT 59.308 41.667 1.21 0.00 37.35 2.24
961 978 1.808343 GCGAAACGAAACCCTGGTTAT 59.192 47.619 1.21 0.00 37.35 1.89
1051 1072 2.611518 CTCGACAAGAAATTCCTCGCT 58.388 47.619 0.00 0.00 0.00 4.93
1064 1085 2.342279 CAACCGCCTCCTCGACAA 59.658 61.111 0.00 0.00 0.00 3.18
1065 1086 4.373116 GCAACCGCCTCCTCGACA 62.373 66.667 0.00 0.00 0.00 4.35
1095 1116 1.210234 TCGATCATGTGGCAGATGGTT 59.790 47.619 22.67 11.89 0.00 3.67
1102 1123 1.141665 CGTCCTCGATCATGTGGCA 59.858 57.895 0.00 0.00 39.71 4.92
1282 1306 2.439507 TGTCAAAGCTCTTGAGGTCCTT 59.560 45.455 10.39 0.00 0.00 3.36
1303 1327 4.022589 TCGACTTTGACGAACTCTATTGGT 60.023 41.667 0.00 0.00 36.84 3.67
1306 1330 4.022589 TGGTCGACTTTGACGAACTCTATT 60.023 41.667 16.46 0.00 45.88 1.73
1307 1331 3.504906 TGGTCGACTTTGACGAACTCTAT 59.495 43.478 16.46 0.00 45.88 1.98
1308 1332 2.880268 TGGTCGACTTTGACGAACTCTA 59.120 45.455 16.46 0.00 45.88 2.43
1309 1333 1.679680 TGGTCGACTTTGACGAACTCT 59.320 47.619 16.46 0.00 45.88 3.24
1321 1345 1.979693 GAGAGTGGCCTGGTCGACT 60.980 63.158 16.46 0.00 0.00 4.18
1336 1360 1.669604 CGAGGATGAGGTCGAAGAGA 58.330 55.000 0.00 0.00 38.50 3.10
1361 1385 3.981071 TCCCTTGATGTTGAGGTAGTG 57.019 47.619 0.00 0.00 0.00 2.74
1445 1469 5.833406 TTCTTGATGTTGAAAGTCTTGCA 57.167 34.783 0.00 0.00 0.00 4.08
1542 1567 2.548920 GCAACCGGATGAAGCTAGCTAT 60.549 50.000 19.70 8.92 0.00 2.97
1582 1607 1.486726 ACTCTCTTTTAGGATGGCGGG 59.513 52.381 0.00 0.00 0.00 6.13
1711 1737 5.575157 AGAGATCAGACTGTTTGAGGTCTA 58.425 41.667 7.14 0.00 40.33 2.59
1919 1946 1.621317 TCAGTGATGCCGTTGGAGTTA 59.379 47.619 0.00 0.00 0.00 2.24
2009 2036 0.673437 CCATGTGCTGACCCGTTTTT 59.327 50.000 0.00 0.00 0.00 1.94
2074 2102 9.645059 CACCAGCCATATATGCATATAGTATAC 57.355 37.037 26.16 15.71 0.00 1.47
2082 2110 5.647658 GCTTTACACCAGCCATATATGCATA 59.352 40.000 9.27 9.27 0.00 3.14
2101 2130 6.148811 GCACAAACTGTAACCATAGAGCTTTA 59.851 38.462 0.00 0.00 0.00 1.85
2123 2152 5.535753 AGGGAAATATTGGCTTTATGCAC 57.464 39.130 0.00 0.00 45.15 4.57
2356 2387 1.202855 AGTGCACAAACCTCTGCAGAT 60.203 47.619 18.63 0.00 43.97 2.90
2460 2491 1.065102 CGTAAGGTGCTAGCGCTTCTA 59.935 52.381 26.36 13.01 36.97 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.