Multiple sequence alignment - TraesCS3B01G308400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G308400 chr3B 100.000 3895 0 0 1 3895 495820080 495816186 0.000000e+00 7193.0
1 TraesCS3B01G308400 chr3B 89.706 136 6 1 1962 2097 8036224 8036351 2.410000e-37 167.0
2 TraesCS3B01G308400 chr3D 97.219 1007 16 5 2385 3386 380595510 380594511 0.000000e+00 1694.0
3 TraesCS3B01G308400 chr3D 95.418 1004 31 6 847 1845 380596909 380595916 0.000000e+00 1585.0
4 TraesCS3B01G308400 chr3D 96.134 595 17 5 1 592 66951428 66952019 0.000000e+00 966.0
5 TraesCS3B01G308400 chr3D 94.585 591 17 9 1 589 587982624 587983201 0.000000e+00 900.0
6 TraesCS3B01G308400 chr3D 92.403 566 24 7 21 582 20845525 20846075 0.000000e+00 789.0
7 TraesCS3B01G308400 chr3D 95.597 477 13 1 3419 3895 380594510 380594042 0.000000e+00 758.0
8 TraesCS3B01G308400 chr3D 96.763 278 9 0 2092 2369 380595771 380595494 7.620000e-127 464.0
9 TraesCS3B01G308400 chr3D 99.174 121 1 0 1844 1964 380595887 380595767 6.550000e-53 219.0
10 TraesCS3B01G308400 chr3D 89.706 68 5 2 3366 3431 123300177 123300244 6.930000e-13 86.1
11 TraesCS3B01G308400 chr3A 93.480 997 43 8 855 1845 503838987 503838007 0.000000e+00 1461.0
12 TraesCS3B01G308400 chr3A 91.429 980 53 18 2389 3355 503837595 503836634 0.000000e+00 1315.0
13 TraesCS3B01G308400 chr3A 93.929 280 15 1 2092 2369 503837862 503837583 4.650000e-114 422.0
14 TraesCS3B01G308400 chr3A 95.868 121 5 0 1844 1964 503837978 503837858 3.070000e-46 196.0
15 TraesCS3B01G308400 chr7D 96.068 585 19 4 1 582 135042653 135043236 0.000000e+00 950.0
16 TraesCS3B01G308400 chr4D 95.719 584 22 3 1 582 121850782 121850200 0.000000e+00 937.0
17 TraesCS3B01G308400 chr4D 96.089 537 17 4 49 582 450216201 450216736 0.000000e+00 872.0
18 TraesCS3B01G308400 chr1B 94.595 592 14 5 1 589 476923826 476923250 0.000000e+00 900.0
19 TraesCS3B01G308400 chr1B 81.905 105 11 7 18 120 666557344 666557442 8.970000e-12 82.4
20 TraesCS3B01G308400 chr7B 92.754 138 10 0 1960 2097 707697908 707698045 2.370000e-47 200.0
21 TraesCS3B01G308400 chr7B 78.924 223 31 9 369 589 703263826 703263618 1.890000e-28 137.0
22 TraesCS3B01G308400 chr5B 92.969 128 9 0 1966 2093 59790995 59791122 1.850000e-43 187.0
23 TraesCS3B01G308400 chr4B 91.241 137 12 0 1961 2097 449525002 449524866 1.850000e-43 187.0
24 TraesCS3B01G308400 chr4B 93.478 92 6 0 1965 2056 516964636 516964727 1.890000e-28 137.0
25 TraesCS3B01G308400 chr2B 91.111 135 12 0 1963 2097 460479310 460479444 2.390000e-42 183.0
26 TraesCS3B01G308400 chr2A 77.778 324 51 17 8 320 513262373 513262686 3.090000e-41 180.0
27 TraesCS3B01G308400 chr5A 90.370 135 13 0 1963 2097 368108745 368108611 1.110000e-40 178.0
28 TraesCS3B01G308400 chr5A 80.392 153 19 7 385 530 568111996 568112144 5.320000e-19 106.0
29 TraesCS3B01G308400 chr5A 92.308 65 5 0 3366 3430 367595282 367595218 4.140000e-15 93.5
30 TraesCS3B01G308400 chr6D 91.525 59 4 1 3374 3431 392274217 392274275 3.230000e-11 80.5
31 TraesCS3B01G308400 chr6D 85.294 68 9 1 3366 3432 354840214 354840281 6.980000e-08 69.4
32 TraesCS3B01G308400 chr6A 91.228 57 4 1 3376 3431 538099135 538099191 4.170000e-10 76.8
33 TraesCS3B01G308400 chr4A 87.879 66 7 1 3367 3431 143697426 143697361 4.170000e-10 76.8
34 TraesCS3B01G308400 chr1D 88.525 61 4 2 3377 3435 60286411 60286470 1.940000e-08 71.3
35 TraesCS3B01G308400 chr1A 85.714 70 5 4 3366 3432 134992858 134992791 6.980000e-08 69.4
36 TraesCS3B01G308400 chr6B 84.286 70 10 1 3365 3433 490851128 490851197 2.510000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G308400 chr3B 495816186 495820080 3894 True 7193.0 7193 100.0000 1 3895 1 chr3B.!!$R1 3894
1 TraesCS3B01G308400 chr3D 66951428 66952019 591 False 966.0 966 96.1340 1 592 1 chr3D.!!$F2 591
2 TraesCS3B01G308400 chr3D 380594042 380596909 2867 True 944.0 1694 96.8342 847 3895 5 chr3D.!!$R1 3048
3 TraesCS3B01G308400 chr3D 587982624 587983201 577 False 900.0 900 94.5850 1 589 1 chr3D.!!$F4 588
4 TraesCS3B01G308400 chr3D 20845525 20846075 550 False 789.0 789 92.4030 21 582 1 chr3D.!!$F1 561
5 TraesCS3B01G308400 chr3A 503836634 503838987 2353 True 848.5 1461 93.6765 855 3355 4 chr3A.!!$R1 2500
6 TraesCS3B01G308400 chr7D 135042653 135043236 583 False 950.0 950 96.0680 1 582 1 chr7D.!!$F1 581
7 TraesCS3B01G308400 chr4D 121850200 121850782 582 True 937.0 937 95.7190 1 582 1 chr4D.!!$R1 581
8 TraesCS3B01G308400 chr4D 450216201 450216736 535 False 872.0 872 96.0890 49 582 1 chr4D.!!$F1 533
9 TraesCS3B01G308400 chr1B 476923250 476923826 576 True 900.0 900 94.5950 1 589 1 chr1B.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 619 0.031857 TCAAAATTGGGCGTGCTGTG 59.968 50.0 0.00 0.0 0.0 3.66 F
910 921 0.248843 CTGGCCAGGTCTCAAGTCTC 59.751 60.0 26.14 0.0 0.0 3.36 F
1998 2045 0.393673 TCTCTGCTCCTCTGACTCCG 60.394 60.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2128 0.320374 TGTGACTAAGGCCCTGTTCG 59.680 55.0 0.0 0.0 0.0 3.95 R
2084 2131 1.958288 AGATGTGACTAAGGCCCTGT 58.042 50.0 0.0 0.0 0.0 4.00 R
3417 3483 0.178970 TAGACATACTCCCTCCGCCC 60.179 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
399 409 3.866883 ACCACAACAAAACCACTGAAG 57.133 42.857 0.00 0.00 0.00 3.02
584 595 2.417651 CCAACGAGCGTCAAATAGGGTA 60.418 50.000 0.00 0.00 0.00 3.69
589 600 1.768870 AGCGTCAAATAGGGTATGCCT 59.231 47.619 0.00 0.00 34.45 4.75
590 601 2.143925 GCGTCAAATAGGGTATGCCTC 58.856 52.381 0.00 0.00 34.45 4.70
591 602 2.484770 GCGTCAAATAGGGTATGCCTCA 60.485 50.000 0.00 0.00 34.45 3.86
593 604 4.196193 CGTCAAATAGGGTATGCCTCAAA 58.804 43.478 0.00 0.00 34.45 2.69
594 605 4.638421 CGTCAAATAGGGTATGCCTCAAAA 59.362 41.667 0.00 0.00 34.45 2.44
595 606 5.299279 CGTCAAATAGGGTATGCCTCAAAAT 59.701 40.000 0.00 0.00 34.45 1.82
596 607 6.183360 CGTCAAATAGGGTATGCCTCAAAATT 60.183 38.462 0.00 0.00 34.45 1.82
597 608 6.980397 GTCAAATAGGGTATGCCTCAAAATTG 59.020 38.462 0.00 0.00 34.45 2.32
598 609 6.098124 TCAAATAGGGTATGCCTCAAAATTGG 59.902 38.462 0.00 0.00 34.45 3.16
599 610 2.750814 AGGGTATGCCTCAAAATTGGG 58.249 47.619 0.00 0.00 34.45 4.12
600 611 1.138859 GGGTATGCCTCAAAATTGGGC 59.861 52.381 14.81 14.81 41.74 5.36
601 612 1.202405 GGTATGCCTCAAAATTGGGCG 60.202 52.381 15.92 0.95 43.22 6.13
602 613 1.476488 GTATGCCTCAAAATTGGGCGT 59.524 47.619 18.17 18.17 43.22 5.68
603 614 0.247185 ATGCCTCAAAATTGGGCGTG 59.753 50.000 15.22 0.00 43.22 5.34
604 615 1.737735 GCCTCAAAATTGGGCGTGC 60.738 57.895 9.03 0.00 35.73 5.34
605 616 1.966762 CCTCAAAATTGGGCGTGCT 59.033 52.632 0.00 0.00 0.00 4.40
606 617 0.388907 CCTCAAAATTGGGCGTGCTG 60.389 55.000 0.00 0.00 0.00 4.41
607 618 0.314935 CTCAAAATTGGGCGTGCTGT 59.685 50.000 0.00 0.00 0.00 4.40
608 619 0.031857 TCAAAATTGGGCGTGCTGTG 59.968 50.000 0.00 0.00 0.00 3.66
609 620 1.300853 AAAATTGGGCGTGCTGTGC 60.301 52.632 0.00 0.00 0.00 4.57
625 636 4.767255 GCCCAGGACAGCCGTCTG 62.767 72.222 0.00 0.00 45.71 3.51
626 637 4.087892 CCCAGGACAGCCGTCTGG 62.088 72.222 0.00 10.10 44.54 3.86
637 648 2.677971 CCGTCTGGCTTCGTAATGG 58.322 57.895 0.00 0.00 0.00 3.16
638 649 1.429148 CCGTCTGGCTTCGTAATGGC 61.429 60.000 0.00 0.00 0.00 4.40
639 650 1.429148 CGTCTGGCTTCGTAATGGCC 61.429 60.000 0.00 0.00 45.45 5.36
640 651 1.095807 GTCTGGCTTCGTAATGGCCC 61.096 60.000 0.00 0.00 44.71 5.80
641 652 2.124901 TGGCTTCGTAATGGCCCG 60.125 61.111 0.00 0.00 44.71 6.13
642 653 2.188469 GGCTTCGTAATGGCCCGA 59.812 61.111 0.00 0.00 39.96 5.14
643 654 1.450669 GGCTTCGTAATGGCCCGAA 60.451 57.895 12.95 12.95 40.45 4.30
664 675 1.953559 GAGATTGCTCCGTTATGCCA 58.046 50.000 0.00 0.00 35.01 4.92
665 676 2.498167 GAGATTGCTCCGTTATGCCAT 58.502 47.619 0.00 0.00 35.01 4.40
666 677 2.880890 GAGATTGCTCCGTTATGCCATT 59.119 45.455 0.00 0.00 35.01 3.16
667 678 3.290710 AGATTGCTCCGTTATGCCATTT 58.709 40.909 0.00 0.00 0.00 2.32
668 679 2.937469 TTGCTCCGTTATGCCATTTG 57.063 45.000 0.00 0.00 0.00 2.32
669 680 1.102154 TGCTCCGTTATGCCATTTGG 58.898 50.000 0.00 0.00 38.53 3.28
670 681 1.340502 TGCTCCGTTATGCCATTTGGA 60.341 47.619 0.00 0.00 37.39 3.53
671 682 1.065551 GCTCCGTTATGCCATTTGGAC 59.934 52.381 0.00 0.00 37.39 4.02
672 683 1.676006 CTCCGTTATGCCATTTGGACC 59.324 52.381 0.00 0.00 37.39 4.46
673 684 0.380378 CCGTTATGCCATTTGGACCG 59.620 55.000 0.00 0.00 37.39 4.79
674 685 1.091537 CGTTATGCCATTTGGACCGT 58.908 50.000 0.00 0.00 37.39 4.83
675 686 1.202132 CGTTATGCCATTTGGACCGTG 60.202 52.381 0.00 0.00 37.39 4.94
676 687 1.816224 GTTATGCCATTTGGACCGTGT 59.184 47.619 0.00 0.00 37.39 4.49
677 688 1.458398 TATGCCATTTGGACCGTGTG 58.542 50.000 0.00 0.00 37.39 3.82
678 689 0.251121 ATGCCATTTGGACCGTGTGA 60.251 50.000 0.00 0.00 37.39 3.58
679 690 0.466372 TGCCATTTGGACCGTGTGAA 60.466 50.000 0.00 0.00 37.39 3.18
680 691 0.887933 GCCATTTGGACCGTGTGAAT 59.112 50.000 0.00 0.00 37.39 2.57
681 692 1.272212 GCCATTTGGACCGTGTGAATT 59.728 47.619 0.00 0.00 37.39 2.17
682 693 2.671070 GCCATTTGGACCGTGTGAATTC 60.671 50.000 0.00 0.00 37.39 2.17
683 694 2.094752 CCATTTGGACCGTGTGAATTCC 60.095 50.000 2.27 0.00 37.39 3.01
684 695 2.350057 TTTGGACCGTGTGAATTCCA 57.650 45.000 2.27 0.00 36.31 3.53
685 696 2.350057 TTGGACCGTGTGAATTCCAA 57.650 45.000 2.27 0.00 44.21 3.53
686 697 2.577606 TGGACCGTGTGAATTCCAAT 57.422 45.000 2.27 0.00 35.13 3.16
687 698 2.870175 TGGACCGTGTGAATTCCAATT 58.130 42.857 2.27 0.00 35.13 2.32
688 699 3.226777 TGGACCGTGTGAATTCCAATTT 58.773 40.909 2.27 0.00 35.13 1.82
689 700 3.639094 TGGACCGTGTGAATTCCAATTTT 59.361 39.130 2.27 0.00 35.13 1.82
690 701 4.100189 TGGACCGTGTGAATTCCAATTTTT 59.900 37.500 2.27 0.00 35.13 1.94
691 702 5.302059 TGGACCGTGTGAATTCCAATTTTTA 59.698 36.000 2.27 0.00 35.13 1.52
692 703 6.015010 TGGACCGTGTGAATTCCAATTTTTAT 60.015 34.615 2.27 0.00 35.13 1.40
693 704 7.176865 TGGACCGTGTGAATTCCAATTTTTATA 59.823 33.333 2.27 0.00 35.13 0.98
694 705 8.194769 GGACCGTGTGAATTCCAATTTTTATAT 58.805 33.333 2.27 0.00 0.00 0.86
715 726 7.693969 ATATATTTGCTCTTCAATACAGCCC 57.306 36.000 0.00 0.00 34.12 5.19
716 727 2.877097 TTGCTCTTCAATACAGCCCA 57.123 45.000 0.00 0.00 31.68 5.36
717 728 2.877097 TGCTCTTCAATACAGCCCAA 57.123 45.000 0.00 0.00 31.68 4.12
718 729 3.153369 TGCTCTTCAATACAGCCCAAA 57.847 42.857 0.00 0.00 31.68 3.28
719 730 3.700538 TGCTCTTCAATACAGCCCAAAT 58.299 40.909 0.00 0.00 31.68 2.32
720 731 4.854173 TGCTCTTCAATACAGCCCAAATA 58.146 39.130 0.00 0.00 31.68 1.40
721 732 4.883585 TGCTCTTCAATACAGCCCAAATAG 59.116 41.667 0.00 0.00 31.68 1.73
722 733 4.276926 GCTCTTCAATACAGCCCAAATAGG 59.723 45.833 0.00 0.00 37.03 2.57
732 743 2.939460 CCCAAATAGGCCGAAAACAG 57.061 50.000 0.00 0.00 35.39 3.16
733 744 1.135112 CCCAAATAGGCCGAAAACAGC 60.135 52.381 0.00 0.00 35.39 4.40
738 749 3.133946 GGCCGAAAACAGCCCAAA 58.866 55.556 0.00 0.00 43.76 3.28
739 750 1.671166 GGCCGAAAACAGCCCAAAT 59.329 52.632 0.00 0.00 43.76 2.32
740 751 0.389817 GGCCGAAAACAGCCCAAATC 60.390 55.000 0.00 0.00 43.76 2.17
741 752 0.316841 GCCGAAAACAGCCCAAATCA 59.683 50.000 0.00 0.00 0.00 2.57
742 753 1.669795 GCCGAAAACAGCCCAAATCAG 60.670 52.381 0.00 0.00 0.00 2.90
743 754 1.067635 CCGAAAACAGCCCAAATCAGG 60.068 52.381 0.00 0.00 0.00 3.86
750 761 2.042639 CCCAAATCAGGGGCCTGG 60.043 66.667 0.84 1.10 45.60 4.45
751 762 2.772924 CCAAATCAGGGGCCTGGT 59.227 61.111 0.84 0.00 43.75 4.00
752 763 1.683365 CCAAATCAGGGGCCTGGTG 60.683 63.158 0.84 0.00 43.75 4.17
753 764 1.683365 CAAATCAGGGGCCTGGTGG 60.683 63.158 0.84 0.00 43.75 4.61
754 765 2.934838 AAATCAGGGGCCTGGTGGG 61.935 63.158 0.84 0.00 43.75 4.61
763 774 2.746277 CCTGGTGGGCTAACGTGC 60.746 66.667 0.00 0.00 0.00 5.34
789 800 3.044235 GGCTGTCCCATTTCCTTTTTG 57.956 47.619 0.00 0.00 0.00 2.44
790 801 2.368548 GGCTGTCCCATTTCCTTTTTGT 59.631 45.455 0.00 0.00 0.00 2.83
791 802 3.392882 GCTGTCCCATTTCCTTTTTGTG 58.607 45.455 0.00 0.00 0.00 3.33
792 803 3.392882 CTGTCCCATTTCCTTTTTGTGC 58.607 45.455 0.00 0.00 0.00 4.57
793 804 2.103941 TGTCCCATTTCCTTTTTGTGCC 59.896 45.455 0.00 0.00 0.00 5.01
794 805 1.342819 TCCCATTTCCTTTTTGTGCCG 59.657 47.619 0.00 0.00 0.00 5.69
795 806 1.069978 CCCATTTCCTTTTTGTGCCGT 59.930 47.619 0.00 0.00 0.00 5.68
796 807 2.134346 CCATTTCCTTTTTGTGCCGTG 58.866 47.619 0.00 0.00 0.00 4.94
797 808 2.223923 CCATTTCCTTTTTGTGCCGTGA 60.224 45.455 0.00 0.00 0.00 4.35
798 809 3.554752 CCATTTCCTTTTTGTGCCGTGAT 60.555 43.478 0.00 0.00 0.00 3.06
799 810 3.810310 TTTCCTTTTTGTGCCGTGATT 57.190 38.095 0.00 0.00 0.00 2.57
800 811 3.363341 TTCCTTTTTGTGCCGTGATTC 57.637 42.857 0.00 0.00 0.00 2.52
801 812 1.265635 TCCTTTTTGTGCCGTGATTCG 59.734 47.619 0.00 0.00 39.52 3.34
817 828 2.126228 CGGTTAAGGAGCGCGTCA 60.126 61.111 8.43 0.00 42.83 4.35
818 829 2.442188 CGGTTAAGGAGCGCGTCAC 61.442 63.158 8.43 0.00 42.83 3.67
830 841 4.487412 CGTCACGAGTACCGGCCC 62.487 72.222 0.00 0.00 43.93 5.80
831 842 4.487412 GTCACGAGTACCGGCCCG 62.487 72.222 0.00 0.00 43.93 6.13
891 902 2.429494 GCCCTGCCAGCCTCTATC 59.571 66.667 0.00 0.00 0.00 2.08
892 903 2.146061 GCCCTGCCAGCCTCTATCT 61.146 63.158 0.00 0.00 0.00 1.98
893 904 1.753470 CCCTGCCAGCCTCTATCTG 59.247 63.158 0.00 0.00 0.00 2.90
900 911 3.978164 GCCTCTATCTGGCCAGGT 58.022 61.111 32.23 28.72 44.32 4.00
901 912 1.751563 GCCTCTATCTGGCCAGGTC 59.248 63.158 32.23 9.56 44.32 3.85
902 913 0.762461 GCCTCTATCTGGCCAGGTCT 60.762 60.000 32.23 19.00 44.32 3.85
905 916 2.392662 CTCTATCTGGCCAGGTCTCAA 58.607 52.381 32.23 12.73 0.00 3.02
910 921 0.248843 CTGGCCAGGTCTCAAGTCTC 59.751 60.000 26.14 0.00 0.00 3.36
918 929 2.698797 AGGTCTCAAGTCTCAACCGAAA 59.301 45.455 0.00 0.00 35.12 3.46
1010 1026 2.774351 GCCTACCATGGCCTCCCT 60.774 66.667 13.04 0.00 46.82 4.20
1548 1564 3.994392 GCTTCACGAGATGGACTAAACAA 59.006 43.478 0.00 0.00 0.00 2.83
1965 2012 9.751542 ACGATATGGTTTTTGATCTACTTAGAG 57.248 33.333 0.00 0.00 35.50 2.43
1966 2013 8.704234 CGATATGGTTTTTGATCTACTTAGAGC 58.296 37.037 0.00 0.00 39.09 4.09
1967 2014 8.910351 ATATGGTTTTTGATCTACTTAGAGCC 57.090 34.615 0.00 0.00 37.91 4.70
1968 2015 6.374417 TGGTTTTTGATCTACTTAGAGCCT 57.626 37.500 0.00 0.00 37.91 4.58
1969 2016 6.173339 TGGTTTTTGATCTACTTAGAGCCTG 58.827 40.000 0.00 0.00 37.91 4.85
1970 2017 6.174049 GGTTTTTGATCTACTTAGAGCCTGT 58.826 40.000 0.00 0.00 37.91 4.00
1971 2018 6.655425 GGTTTTTGATCTACTTAGAGCCTGTT 59.345 38.462 0.00 0.00 37.91 3.16
1972 2019 7.175119 GGTTTTTGATCTACTTAGAGCCTGTTT 59.825 37.037 0.00 0.00 37.91 2.83
1973 2020 7.672983 TTTTGATCTACTTAGAGCCTGTTTG 57.327 36.000 0.00 0.00 37.91 2.93
1974 2021 5.344743 TGATCTACTTAGAGCCTGTTTGG 57.655 43.478 0.00 0.00 37.91 3.28
1975 2022 4.777896 TGATCTACTTAGAGCCTGTTTGGT 59.222 41.667 0.00 0.00 37.91 3.67
1976 2023 5.248477 TGATCTACTTAGAGCCTGTTTGGTT 59.752 40.000 0.00 0.00 37.91 3.67
1977 2024 5.148651 TCTACTTAGAGCCTGTTTGGTTC 57.851 43.478 0.00 0.00 45.13 3.62
1978 2025 3.141767 ACTTAGAGCCTGTTTGGTTCC 57.858 47.619 0.00 0.00 45.82 3.62
1979 2026 2.711547 ACTTAGAGCCTGTTTGGTTCCT 59.288 45.455 0.00 0.00 45.82 3.36
1980 2027 3.244596 ACTTAGAGCCTGTTTGGTTCCTC 60.245 47.826 0.00 0.00 45.82 3.71
1981 2028 1.439543 AGAGCCTGTTTGGTTCCTCT 58.560 50.000 0.00 0.00 45.82 3.69
1982 2029 1.349357 AGAGCCTGTTTGGTTCCTCTC 59.651 52.381 0.00 0.00 45.82 3.20
1983 2030 1.349357 GAGCCTGTTTGGTTCCTCTCT 59.651 52.381 0.00 0.00 39.78 3.10
1984 2031 1.072965 AGCCTGTTTGGTTCCTCTCTG 59.927 52.381 0.00 0.00 38.35 3.35
1985 2032 1.528129 CCTGTTTGGTTCCTCTCTGC 58.472 55.000 0.00 0.00 0.00 4.26
1986 2033 1.072965 CCTGTTTGGTTCCTCTCTGCT 59.927 52.381 0.00 0.00 0.00 4.24
1987 2034 2.421619 CTGTTTGGTTCCTCTCTGCTC 58.578 52.381 0.00 0.00 0.00 4.26
1988 2035 1.072331 TGTTTGGTTCCTCTCTGCTCC 59.928 52.381 0.00 0.00 0.00 4.70
1989 2036 1.349357 GTTTGGTTCCTCTCTGCTCCT 59.651 52.381 0.00 0.00 0.00 3.69
1990 2037 1.270907 TTGGTTCCTCTCTGCTCCTC 58.729 55.000 0.00 0.00 0.00 3.71
1991 2038 0.411452 TGGTTCCTCTCTGCTCCTCT 59.589 55.000 0.00 0.00 0.00 3.69
1992 2039 0.823460 GGTTCCTCTCTGCTCCTCTG 59.177 60.000 0.00 0.00 0.00 3.35
1993 2040 1.618345 GGTTCCTCTCTGCTCCTCTGA 60.618 57.143 0.00 0.00 0.00 3.27
1994 2041 1.476488 GTTCCTCTCTGCTCCTCTGAC 59.524 57.143 0.00 0.00 0.00 3.51
1995 2042 0.998928 TCCTCTCTGCTCCTCTGACT 59.001 55.000 0.00 0.00 0.00 3.41
1996 2043 1.064758 TCCTCTCTGCTCCTCTGACTC 60.065 57.143 0.00 0.00 0.00 3.36
1997 2044 1.392589 CTCTCTGCTCCTCTGACTCC 58.607 60.000 0.00 0.00 0.00 3.85
1998 2045 0.393673 TCTCTGCTCCTCTGACTCCG 60.394 60.000 0.00 0.00 0.00 4.63
1999 2046 2.003658 CTCTGCTCCTCTGACTCCGC 62.004 65.000 0.00 0.00 0.00 5.54
2000 2047 2.036414 TGCTCCTCTGACTCCGCT 59.964 61.111 0.00 0.00 0.00 5.52
2001 2048 2.003658 CTGCTCCTCTGACTCCGCTC 62.004 65.000 0.00 0.00 0.00 5.03
2002 2049 2.781158 GCTCCTCTGACTCCGCTCC 61.781 68.421 0.00 0.00 0.00 4.70
2003 2050 2.043852 TCCTCTGACTCCGCTCCC 60.044 66.667 0.00 0.00 0.00 4.30
2004 2051 3.522731 CCTCTGACTCCGCTCCCG 61.523 72.222 0.00 0.00 0.00 5.14
2020 2067 4.208686 CGGAGCGGACCAGCCTAC 62.209 72.222 4.93 0.00 38.01 3.18
2021 2068 3.075005 GGAGCGGACCAGCCTACA 61.075 66.667 4.93 0.00 38.01 2.74
2022 2069 2.496817 GAGCGGACCAGCCTACAG 59.503 66.667 4.93 0.00 38.01 2.74
2023 2070 3.724914 GAGCGGACCAGCCTACAGC 62.725 68.421 4.93 0.00 44.25 4.40
2034 2081 2.813779 GCCTACAGCTCATTTTGACG 57.186 50.000 0.00 0.00 38.99 4.35
2035 2082 1.398390 GCCTACAGCTCATTTTGACGG 59.602 52.381 0.00 0.00 38.99 4.79
2036 2083 2.935238 GCCTACAGCTCATTTTGACGGA 60.935 50.000 0.00 0.00 38.99 4.69
2037 2084 2.932614 CCTACAGCTCATTTTGACGGAG 59.067 50.000 0.00 0.00 0.00 4.63
2040 2087 1.425428 GCTCATTTTGACGGAGCGG 59.575 57.895 0.00 0.00 43.83 5.52
2041 2088 1.425428 CTCATTTTGACGGAGCGGC 59.575 57.895 0.00 0.00 34.27 6.53
2042 2089 2.098298 CATTTTGACGGAGCGGCG 59.902 61.111 0.51 0.51 37.93 6.46
2043 2090 2.047655 ATTTTGACGGAGCGGCGA 60.048 55.556 12.98 0.00 37.93 5.54
2044 2091 1.669760 ATTTTGACGGAGCGGCGAA 60.670 52.632 12.98 0.00 37.93 4.70
2045 2092 1.888172 TTTTGACGGAGCGGCGAAA 60.888 52.632 12.98 0.00 44.69 3.46
2046 2093 1.437772 TTTTGACGGAGCGGCGAAAA 61.438 50.000 12.98 3.41 44.05 2.29
2047 2094 2.108344 TTTGACGGAGCGGCGAAAAC 62.108 55.000 12.98 0.00 37.93 2.43
2048 2095 3.785499 GACGGAGCGGCGAAAACC 61.785 66.667 12.98 6.55 0.00 3.27
2051 2098 3.431725 GGAGCGGCGAAAACCCAG 61.432 66.667 12.98 0.00 0.00 4.45
2052 2099 4.103103 GAGCGGCGAAAACCCAGC 62.103 66.667 12.98 0.00 0.00 4.85
2053 2100 4.643387 AGCGGCGAAAACCCAGCT 62.643 61.111 12.98 0.00 0.00 4.24
2054 2101 4.103103 GCGGCGAAAACCCAGCTC 62.103 66.667 12.98 0.00 0.00 4.09
2055 2102 3.431725 CGGCGAAAACCCAGCTCC 61.432 66.667 0.00 0.00 0.00 4.70
2056 2103 3.062466 GGCGAAAACCCAGCTCCC 61.062 66.667 0.00 0.00 0.00 4.30
2057 2104 3.062466 GCGAAAACCCAGCTCCCC 61.062 66.667 0.00 0.00 0.00 4.81
2058 2105 2.434331 CGAAAACCCAGCTCCCCA 59.566 61.111 0.00 0.00 0.00 4.96
2059 2106 1.675641 CGAAAACCCAGCTCCCCAG 60.676 63.158 0.00 0.00 0.00 4.45
2170 2217 7.843490 TTTACTTGGATCACTAAGCATGTAC 57.157 36.000 0.00 0.00 37.99 2.90
2296 2343 1.954382 ACGTTCAAAAAGCTCTTCCCC 59.046 47.619 0.00 0.00 0.00 4.81
2373 2422 9.451002 TCCCTAGACTTCTGTATATCTTATTCG 57.549 37.037 0.00 0.00 0.00 3.34
2374 2423 8.185505 CCCTAGACTTCTGTATATCTTATTCGC 58.814 40.741 0.00 0.00 0.00 4.70
2375 2424 8.731605 CCTAGACTTCTGTATATCTTATTCGCA 58.268 37.037 0.00 0.00 0.00 5.10
2378 2427 9.817809 AGACTTCTGTATATCTTATTCGCAAAA 57.182 29.630 0.00 0.00 0.00 2.44
2576 2627 3.933155 CTCGTGAAGCACCAATATGAC 57.067 47.619 0.00 0.00 0.00 3.06
2621 2672 2.375174 TGGAATCCAGCTGTTTAGTGGT 59.625 45.455 13.81 0.00 32.73 4.16
2708 2759 4.829492 AGCAATTATAAGGGCTTCATGGTC 59.171 41.667 7.62 0.00 31.34 4.02
2927 2978 9.282569 GTGCTGGAGATTCTATGATATTTTTCT 57.717 33.333 0.00 0.00 0.00 2.52
2966 3017 6.460123 GCTTCTGTGGATTCTCTTTTTGTCAA 60.460 38.462 0.00 0.00 0.00 3.18
3041 3092 5.126222 TGGTATTGTTTTTCACTGCAGTTGA 59.874 36.000 18.94 15.26 0.00 3.18
3141 3192 6.533819 GCGTTGGCAATGTAATATACTACA 57.466 37.500 19.84 0.00 39.62 2.74
3142 3193 6.590357 GCGTTGGCAATGTAATATACTACAG 58.410 40.000 19.84 0.00 39.62 2.74
3289 3350 3.741344 CGAAGTAGCAAAGTTAGCACTGT 59.259 43.478 0.00 0.00 31.60 3.55
3339 3400 4.441634 GGCATCACATTACTACTCTCGGTT 60.442 45.833 0.00 0.00 0.00 4.44
3362 3423 3.718956 CAGAATTCCAATCTACTCCCCCT 59.281 47.826 0.65 0.00 0.00 4.79
3363 3424 3.718956 AGAATTCCAATCTACTCCCCCTG 59.281 47.826 0.65 0.00 0.00 4.45
3364 3425 2.661176 TTCCAATCTACTCCCCCTGT 57.339 50.000 0.00 0.00 0.00 4.00
3386 3452 1.530323 ATAAGCGCGTTTTTGACCCT 58.470 45.000 14.84 0.00 0.00 4.34
3387 3453 2.166821 TAAGCGCGTTTTTGACCCTA 57.833 45.000 14.84 0.00 0.00 3.53
3388 3454 1.310904 AAGCGCGTTTTTGACCCTAA 58.689 45.000 8.43 0.00 0.00 2.69
3389 3455 1.530323 AGCGCGTTTTTGACCCTAAT 58.470 45.000 8.43 0.00 0.00 1.73
3390 3456 1.199097 AGCGCGTTTTTGACCCTAATG 59.801 47.619 8.43 0.00 0.00 1.90
3391 3457 1.068816 GCGCGTTTTTGACCCTAATGT 60.069 47.619 8.43 0.00 0.00 2.71
3392 3458 2.160022 GCGCGTTTTTGACCCTAATGTA 59.840 45.455 8.43 0.00 0.00 2.29
3393 3459 3.365164 GCGCGTTTTTGACCCTAATGTAA 60.365 43.478 8.43 0.00 0.00 2.41
3394 3460 4.673320 GCGCGTTTTTGACCCTAATGTAAT 60.673 41.667 8.43 0.00 0.00 1.89
3395 3461 4.791163 CGCGTTTTTGACCCTAATGTAATG 59.209 41.667 0.00 0.00 0.00 1.90
3396 3462 5.618195 CGCGTTTTTGACCCTAATGTAATGT 60.618 40.000 0.00 0.00 0.00 2.71
3397 3463 5.571357 GCGTTTTTGACCCTAATGTAATGTG 59.429 40.000 0.00 0.00 0.00 3.21
3398 3464 6.568844 GCGTTTTTGACCCTAATGTAATGTGA 60.569 38.462 0.00 0.00 0.00 3.58
3399 3465 7.364200 CGTTTTTGACCCTAATGTAATGTGAA 58.636 34.615 0.00 0.00 0.00 3.18
3400 3466 7.863375 CGTTTTTGACCCTAATGTAATGTGAAA 59.137 33.333 0.00 0.00 0.00 2.69
3401 3467 9.535878 GTTTTTGACCCTAATGTAATGTGAAAA 57.464 29.630 0.00 0.00 0.00 2.29
3402 3468 9.535878 TTTTTGACCCTAATGTAATGTGAAAAC 57.464 29.630 0.00 0.00 0.00 2.43
3403 3469 6.489127 TGACCCTAATGTAATGTGAAAACG 57.511 37.500 0.00 0.00 0.00 3.60
3404 3470 5.106475 TGACCCTAATGTAATGTGAAAACGC 60.106 40.000 0.00 0.00 0.00 4.84
3405 3471 5.007682 ACCCTAATGTAATGTGAAAACGCT 58.992 37.500 0.00 0.00 0.00 5.07
3406 3472 5.123344 ACCCTAATGTAATGTGAAAACGCTC 59.877 40.000 0.00 0.00 0.00 5.03
3407 3473 5.354234 CCCTAATGTAATGTGAAAACGCTCT 59.646 40.000 0.00 0.00 0.00 4.09
3408 3474 6.128007 CCCTAATGTAATGTGAAAACGCTCTT 60.128 38.462 0.00 0.00 0.00 2.85
3409 3475 7.065324 CCCTAATGTAATGTGAAAACGCTCTTA 59.935 37.037 0.00 0.00 0.00 2.10
3410 3476 8.612619 CCTAATGTAATGTGAAAACGCTCTTAT 58.387 33.333 0.00 0.00 0.00 1.73
3447 3513 4.654262 GGGAGTATGTCTATGTCCTTGGAA 59.346 45.833 0.00 0.00 0.00 3.53
3459 3525 8.095792 TCTATGTCCTTGGAATTGTTTACGTTA 58.904 33.333 0.00 0.00 0.00 3.18
3470 3536 8.865978 GGAATTGTTTACGTTATCCAAATTTCC 58.134 33.333 0.00 0.00 0.00 3.13
3507 3573 5.983720 GGATTATACGCTTGCTTACTCTCAA 59.016 40.000 0.00 0.00 0.00 3.02
3513 3579 4.331168 ACGCTTGCTTACTCTCAATCATTC 59.669 41.667 0.00 0.00 0.00 2.67
3539 3605 0.850217 TGAAGTTCACGCGTTTCTCG 59.150 50.000 10.22 0.00 43.12 4.04
3581 3647 4.502604 CCCTTCAGACTCAGTTTTCCGTAA 60.503 45.833 0.00 0.00 0.00 3.18
3653 3719 6.037062 TCTCACAATTATGTAGAACCATTGCG 59.963 38.462 0.00 0.00 37.82 4.85
3659 3725 1.066430 TGTAGAACCATTGCGTCCTCC 60.066 52.381 0.00 0.00 0.00 4.30
3754 3820 8.218338 AGATGGCATGAAAAACAGTAATCTAG 57.782 34.615 3.81 0.00 0.00 2.43
3879 3945 8.739972 GGGTATTTTAGTCATGTCAAAATCACT 58.260 33.333 13.86 2.47 34.57 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
399 409 4.561735 TTTCTCAATGTTTTGTCCGGTC 57.438 40.909 0.00 0.00 34.32 4.79
584 595 0.247185 CACGCCCAATTTTGAGGCAT 59.753 50.000 17.32 5.12 41.57 4.40
589 600 0.031857 CACAGCACGCCCAATTTTGA 59.968 50.000 0.00 0.00 0.00 2.69
590 601 1.559149 GCACAGCACGCCCAATTTTG 61.559 55.000 0.00 0.00 0.00 2.44
591 602 1.300853 GCACAGCACGCCCAATTTT 60.301 52.632 0.00 0.00 0.00 1.82
593 604 3.683937 GGCACAGCACGCCCAATT 61.684 61.111 0.00 0.00 44.22 2.32
600 611 4.624364 TGTCCTGGGCACAGCACG 62.624 66.667 11.59 0.00 38.26 5.34
601 612 2.670934 CTGTCCTGGGCACAGCAC 60.671 66.667 11.59 6.81 43.53 4.40
608 619 4.767255 CAGACGGCTGTCCTGGGC 62.767 72.222 22.17 0.00 46.74 5.36
609 620 4.087892 CCAGACGGCTGTCCTGGG 62.088 72.222 25.09 19.57 46.74 4.45
619 630 1.429148 GCCATTACGAAGCCAGACGG 61.429 60.000 0.00 0.00 0.00 4.79
620 631 1.429148 GGCCATTACGAAGCCAGACG 61.429 60.000 0.00 0.00 46.34 4.18
621 632 2.394604 GGCCATTACGAAGCCAGAC 58.605 57.895 0.00 0.00 46.34 3.51
622 633 4.954933 GGCCATTACGAAGCCAGA 57.045 55.556 0.00 0.00 46.34 3.86
625 636 1.450669 TTCGGGCCATTACGAAGCC 60.451 57.895 4.39 0.00 43.30 4.35
626 637 4.211986 TTCGGGCCATTACGAAGC 57.788 55.556 4.39 0.00 43.30 3.86
628 639 0.177141 CTCCTTCGGGCCATTACGAA 59.823 55.000 12.95 12.95 45.61 3.85
629 640 0.685131 TCTCCTTCGGGCCATTACGA 60.685 55.000 4.39 0.15 37.33 3.43
630 641 0.393077 ATCTCCTTCGGGCCATTACG 59.607 55.000 4.39 0.00 34.44 3.18
631 642 2.222027 CAATCTCCTTCGGGCCATTAC 58.778 52.381 4.39 0.00 34.44 1.89
632 643 1.476833 GCAATCTCCTTCGGGCCATTA 60.477 52.381 4.39 0.00 34.44 1.90
633 644 0.753111 GCAATCTCCTTCGGGCCATT 60.753 55.000 4.39 0.00 34.44 3.16
634 645 1.152881 GCAATCTCCTTCGGGCCAT 60.153 57.895 4.39 0.00 34.44 4.40
635 646 2.257409 GAGCAATCTCCTTCGGGCCA 62.257 60.000 4.39 0.00 33.19 5.36
636 647 1.524849 GAGCAATCTCCTTCGGGCC 60.525 63.158 0.00 0.00 33.19 5.80
637 648 4.132999 GAGCAATCTCCTTCGGGC 57.867 61.111 0.00 0.00 33.19 6.13
645 656 1.953559 TGGCATAACGGAGCAATCTC 58.046 50.000 0.00 0.00 38.62 2.75
646 657 2.645838 ATGGCATAACGGAGCAATCT 57.354 45.000 0.00 0.00 0.00 2.40
647 658 3.374745 CAAATGGCATAACGGAGCAATC 58.625 45.455 0.00 0.00 0.00 2.67
648 659 2.101249 CCAAATGGCATAACGGAGCAAT 59.899 45.455 0.00 0.00 0.00 3.56
649 660 1.476085 CCAAATGGCATAACGGAGCAA 59.524 47.619 0.00 0.00 0.00 3.91
650 661 1.102154 CCAAATGGCATAACGGAGCA 58.898 50.000 0.00 0.00 0.00 4.26
651 662 1.065551 GTCCAAATGGCATAACGGAGC 59.934 52.381 11.50 5.21 34.44 4.70
652 663 1.676006 GGTCCAAATGGCATAACGGAG 59.324 52.381 11.50 0.00 34.44 4.63
653 664 1.757682 GGTCCAAATGGCATAACGGA 58.242 50.000 0.00 4.28 34.44 4.69
654 665 0.380378 CGGTCCAAATGGCATAACGG 59.620 55.000 0.00 1.58 34.44 4.44
655 666 1.091537 ACGGTCCAAATGGCATAACG 58.908 50.000 0.00 1.45 34.44 3.18
656 667 1.816224 ACACGGTCCAAATGGCATAAC 59.184 47.619 0.00 0.00 34.44 1.89
657 668 1.815613 CACACGGTCCAAATGGCATAA 59.184 47.619 0.00 0.00 34.44 1.90
658 669 1.003696 TCACACGGTCCAAATGGCATA 59.996 47.619 0.00 0.00 34.44 3.14
659 670 0.251121 TCACACGGTCCAAATGGCAT 60.251 50.000 0.00 0.00 34.44 4.40
660 671 0.466372 TTCACACGGTCCAAATGGCA 60.466 50.000 0.00 0.00 34.44 4.92
661 672 0.887933 ATTCACACGGTCCAAATGGC 59.112 50.000 0.00 0.00 34.44 4.40
662 673 2.094752 GGAATTCACACGGTCCAAATGG 60.095 50.000 7.93 0.00 0.00 3.16
663 674 2.556189 TGGAATTCACACGGTCCAAATG 59.444 45.455 7.93 0.00 37.22 2.32
664 675 2.870175 TGGAATTCACACGGTCCAAAT 58.130 42.857 7.93 0.00 37.22 2.32
665 676 2.350057 TGGAATTCACACGGTCCAAA 57.650 45.000 7.93 0.00 37.22 3.28
666 677 2.350057 TTGGAATTCACACGGTCCAA 57.650 45.000 7.93 0.00 45.62 3.53
667 678 2.577606 ATTGGAATTCACACGGTCCA 57.422 45.000 7.93 0.00 38.39 4.02
668 679 3.934457 AAATTGGAATTCACACGGTCC 57.066 42.857 7.93 0.00 0.00 4.46
689 700 9.231297 GGGCTGTATTGAAGAGCAAATATATAA 57.769 33.333 0.00 0.00 46.25 0.98
690 701 8.382405 TGGGCTGTATTGAAGAGCAAATATATA 58.618 33.333 0.00 0.00 46.25 0.86
691 702 7.233632 TGGGCTGTATTGAAGAGCAAATATAT 58.766 34.615 0.00 0.00 46.25 0.86
692 703 6.600388 TGGGCTGTATTGAAGAGCAAATATA 58.400 36.000 0.00 0.00 46.25 0.86
693 704 5.448654 TGGGCTGTATTGAAGAGCAAATAT 58.551 37.500 0.00 0.00 46.25 1.28
694 705 4.854173 TGGGCTGTATTGAAGAGCAAATA 58.146 39.130 0.00 0.00 46.25 1.40
695 706 3.700538 TGGGCTGTATTGAAGAGCAAAT 58.299 40.909 0.00 0.00 46.25 2.32
696 707 3.153369 TGGGCTGTATTGAAGAGCAAA 57.847 42.857 0.00 0.00 46.25 3.68
697 708 2.877097 TGGGCTGTATTGAAGAGCAA 57.123 45.000 0.00 0.00 46.25 3.91
698 709 2.877097 TTGGGCTGTATTGAAGAGCA 57.123 45.000 0.00 0.00 46.25 4.26
699 710 4.276926 CCTATTTGGGCTGTATTGAAGAGC 59.723 45.833 0.00 0.00 43.73 4.09
713 724 1.135112 GCTGTTTTCGGCCTATTTGGG 60.135 52.381 0.00 0.00 45.68 4.12
714 725 2.278026 GCTGTTTTCGGCCTATTTGG 57.722 50.000 0.00 0.00 45.68 3.28
723 734 1.067635 CCTGATTTGGGCTGTTTTCGG 60.068 52.381 0.00 0.00 0.00 4.30
724 735 1.067635 CCCTGATTTGGGCTGTTTTCG 60.068 52.381 0.00 0.00 40.84 3.46
725 736 1.276138 CCCCTGATTTGGGCTGTTTTC 59.724 52.381 0.00 0.00 45.78 2.29
726 737 1.351076 CCCCTGATTTGGGCTGTTTT 58.649 50.000 0.00 0.00 45.78 2.43
727 738 3.071671 CCCCTGATTTGGGCTGTTT 57.928 52.632 0.00 0.00 45.78 2.83
728 739 4.872293 CCCCTGATTTGGGCTGTT 57.128 55.556 0.00 0.00 45.78 3.16
733 744 2.042639 CCAGGCCCCTGATTTGGG 60.043 66.667 15.76 0.00 46.30 4.12
734 745 1.683365 CACCAGGCCCCTGATTTGG 60.683 63.158 15.76 0.04 46.30 3.28
735 746 1.683365 CCACCAGGCCCCTGATTTG 60.683 63.158 15.76 9.16 46.30 2.32
736 747 2.772924 CCACCAGGCCCCTGATTT 59.227 61.111 15.76 0.00 46.30 2.17
737 748 3.350163 CCCACCAGGCCCCTGATT 61.350 66.667 15.76 0.00 46.30 2.57
746 757 2.746277 GCACGTTAGCCCACCAGG 60.746 66.667 0.00 0.00 39.47 4.45
773 784 2.766313 GGCACAAAAAGGAAATGGGAC 58.234 47.619 0.00 0.00 0.00 4.46
774 785 1.342819 CGGCACAAAAAGGAAATGGGA 59.657 47.619 0.00 0.00 0.00 4.37
775 786 1.069978 ACGGCACAAAAAGGAAATGGG 59.930 47.619 0.00 0.00 0.00 4.00
776 787 2.134346 CACGGCACAAAAAGGAAATGG 58.866 47.619 0.00 0.00 0.00 3.16
777 788 3.090952 TCACGGCACAAAAAGGAAATG 57.909 42.857 0.00 0.00 0.00 2.32
778 789 4.306600 GAATCACGGCACAAAAAGGAAAT 58.693 39.130 0.00 0.00 0.00 2.17
779 790 3.712187 GAATCACGGCACAAAAAGGAAA 58.288 40.909 0.00 0.00 0.00 3.13
780 791 2.287308 CGAATCACGGCACAAAAAGGAA 60.287 45.455 0.00 0.00 38.46 3.36
781 792 1.265635 CGAATCACGGCACAAAAAGGA 59.734 47.619 0.00 0.00 38.46 3.36
782 793 1.685302 CGAATCACGGCACAAAAAGG 58.315 50.000 0.00 0.00 38.46 3.11
793 804 0.921347 CGCTCCTTAACCGAATCACG 59.079 55.000 0.00 0.00 42.18 4.35
794 805 0.651031 GCGCTCCTTAACCGAATCAC 59.349 55.000 0.00 0.00 0.00 3.06
795 806 0.804544 CGCGCTCCTTAACCGAATCA 60.805 55.000 5.56 0.00 0.00 2.57
796 807 0.804933 ACGCGCTCCTTAACCGAATC 60.805 55.000 5.73 0.00 0.00 2.52
797 808 0.804933 GACGCGCTCCTTAACCGAAT 60.805 55.000 5.73 0.00 0.00 3.34
798 809 1.444895 GACGCGCTCCTTAACCGAA 60.445 57.895 5.73 0.00 0.00 4.30
799 810 2.180017 GACGCGCTCCTTAACCGA 59.820 61.111 5.73 0.00 0.00 4.69
800 811 2.126228 TGACGCGCTCCTTAACCG 60.126 61.111 5.73 0.00 0.00 4.44
801 812 2.442188 CGTGACGCGCTCCTTAACC 61.442 63.158 5.73 0.00 0.00 2.85
802 813 1.403972 CTCGTGACGCGCTCCTTAAC 61.404 60.000 5.73 0.00 41.07 2.01
803 814 1.154093 CTCGTGACGCGCTCCTTAA 60.154 57.895 5.73 0.00 41.07 1.85
804 815 1.020861 TACTCGTGACGCGCTCCTTA 61.021 55.000 5.73 0.00 41.07 2.69
805 816 2.330372 TACTCGTGACGCGCTCCTT 61.330 57.895 5.73 0.00 41.07 3.36
806 817 2.745100 TACTCGTGACGCGCTCCT 60.745 61.111 5.73 0.00 41.07 3.69
807 818 2.576317 GTACTCGTGACGCGCTCC 60.576 66.667 5.73 0.00 41.07 4.70
808 819 2.576317 GGTACTCGTGACGCGCTC 60.576 66.667 5.73 3.58 41.07 5.03
809 820 4.456253 CGGTACTCGTGACGCGCT 62.456 66.667 5.73 0.00 41.07 5.92
813 824 4.487412 GGGCCGGTACTCGTGACG 62.487 72.222 1.90 0.00 37.11 4.35
814 825 4.487412 CGGGCCGGTACTCGTGAC 62.487 72.222 20.56 0.00 37.11 3.67
830 841 3.719883 TAATACACGTGCCGGGCCG 62.720 63.158 21.46 21.46 31.12 6.13
831 842 1.885850 CTAATACACGTGCCGGGCC 60.886 63.158 17.22 7.00 31.12 5.80
832 843 1.885850 CCTAATACACGTGCCGGGC 60.886 63.158 17.22 13.32 31.12 6.13
833 844 1.885850 GCCTAATACACGTGCCGGG 60.886 63.158 17.22 11.87 35.82 5.73
834 845 2.235016 CGCCTAATACACGTGCCGG 61.235 63.158 17.22 9.94 0.00 6.13
835 846 1.517694 ACGCCTAATACACGTGCCG 60.518 57.895 17.22 9.38 38.85 5.69
836 847 4.507879 ACGCCTAATACACGTGCC 57.492 55.556 17.22 0.00 38.85 5.01
839 850 0.459585 CAGGCACGCCTAATACACGT 60.460 55.000 10.95 0.00 46.28 4.49
840 851 1.151777 CCAGGCACGCCTAATACACG 61.152 60.000 10.95 0.00 46.28 4.49
841 852 1.436983 GCCAGGCACGCCTAATACAC 61.437 60.000 10.95 0.00 46.28 2.90
842 853 1.153249 GCCAGGCACGCCTAATACA 60.153 57.895 10.95 0.00 46.28 2.29
843 854 1.892391 GGCCAGGCACGCCTAATAC 60.892 63.158 15.19 0.37 46.28 1.89
844 855 2.508928 GGCCAGGCACGCCTAATA 59.491 61.111 15.19 0.00 46.28 0.98
845 856 4.506255 GGGCCAGGCACGCCTAAT 62.506 66.667 15.19 0.00 46.28 1.73
886 897 2.292521 ACTTGAGACCTGGCCAGATAGA 60.293 50.000 34.91 13.10 0.00 1.98
887 898 2.102252 GACTTGAGACCTGGCCAGATAG 59.898 54.545 34.91 19.78 0.00 2.08
889 900 0.908198 GACTTGAGACCTGGCCAGAT 59.092 55.000 34.91 19.92 0.00 2.90
891 902 0.248843 GAGACTTGAGACCTGGCCAG 59.751 60.000 26.87 26.87 0.00 4.85
892 903 0.471780 TGAGACTTGAGACCTGGCCA 60.472 55.000 4.71 4.71 0.00 5.36
893 904 0.687354 TTGAGACTTGAGACCTGGCC 59.313 55.000 0.00 0.00 0.00 5.36
894 905 1.609320 GGTTGAGACTTGAGACCTGGC 60.609 57.143 0.00 0.00 0.00 4.85
895 906 1.337260 CGGTTGAGACTTGAGACCTGG 60.337 57.143 0.00 0.00 0.00 4.45
896 907 1.613925 TCGGTTGAGACTTGAGACCTG 59.386 52.381 0.00 0.00 0.00 4.00
897 908 1.996798 TCGGTTGAGACTTGAGACCT 58.003 50.000 0.00 0.00 0.00 3.85
898 909 2.814280 TTCGGTTGAGACTTGAGACC 57.186 50.000 0.00 0.00 0.00 3.85
899 910 5.674933 ATTTTTCGGTTGAGACTTGAGAC 57.325 39.130 0.00 0.00 0.00 3.36
900 911 6.522054 AGTATTTTTCGGTTGAGACTTGAGA 58.478 36.000 0.00 0.00 0.00 3.27
901 912 6.423905 TGAGTATTTTTCGGTTGAGACTTGAG 59.576 38.462 0.00 0.00 0.00 3.02
902 913 6.285224 TGAGTATTTTTCGGTTGAGACTTGA 58.715 36.000 0.00 0.00 0.00 3.02
905 916 7.745620 AATTGAGTATTTTTCGGTTGAGACT 57.254 32.000 0.00 0.00 0.00 3.24
910 921 6.739550 GTCCGTAATTGAGTATTTTTCGGTTG 59.260 38.462 0.00 0.00 36.32 3.77
918 929 4.472108 TGAGGGGTCCGTAATTGAGTATTT 59.528 41.667 0.00 0.00 0.00 1.40
1082 1098 2.276740 GGTGGGAAGGGATGGCAG 59.723 66.667 0.00 0.00 0.00 4.85
1262 1278 4.162690 ACGAGGGAGGGCGATTGC 62.163 66.667 0.00 0.00 41.71 3.56
1443 1459 2.490148 CGCTGATGGAGCCGTCCTA 61.490 63.158 6.29 0.00 46.01 2.94
1548 1564 3.631250 ACCACTGTCAAACTTTCATGGT 58.369 40.909 0.00 0.00 34.36 3.55
1959 2006 3.008485 AGAGGAACCAAACAGGCTCTAAG 59.992 47.826 0.00 0.00 43.14 2.18
1960 2007 2.979678 AGAGGAACCAAACAGGCTCTAA 59.020 45.455 0.00 0.00 43.14 2.10
1961 2008 2.567615 GAGAGGAACCAAACAGGCTCTA 59.432 50.000 0.00 0.00 43.14 2.43
1962 2009 1.349357 GAGAGGAACCAAACAGGCTCT 59.651 52.381 0.00 0.00 43.14 4.09
1963 2010 1.349357 AGAGAGGAACCAAACAGGCTC 59.651 52.381 0.00 0.00 43.14 4.70
1964 2011 1.072965 CAGAGAGGAACCAAACAGGCT 59.927 52.381 0.00 0.00 43.14 4.58
1965 2012 1.528129 CAGAGAGGAACCAAACAGGC 58.472 55.000 0.00 0.00 43.14 4.85
1966 2013 1.072965 AGCAGAGAGGAACCAAACAGG 59.927 52.381 0.00 0.00 45.67 4.00
1967 2014 2.421619 GAGCAGAGAGGAACCAAACAG 58.578 52.381 0.00 0.00 0.00 3.16
1968 2015 1.072331 GGAGCAGAGAGGAACCAAACA 59.928 52.381 0.00 0.00 0.00 2.83
1969 2016 1.349357 AGGAGCAGAGAGGAACCAAAC 59.651 52.381 0.00 0.00 0.00 2.93
1970 2017 1.625818 GAGGAGCAGAGAGGAACCAAA 59.374 52.381 0.00 0.00 0.00 3.28
1971 2018 1.203237 AGAGGAGCAGAGAGGAACCAA 60.203 52.381 0.00 0.00 0.00 3.67
1972 2019 0.411452 AGAGGAGCAGAGAGGAACCA 59.589 55.000 0.00 0.00 0.00 3.67
1973 2020 0.823460 CAGAGGAGCAGAGAGGAACC 59.177 60.000 0.00 0.00 0.00 3.62
1974 2021 1.476488 GTCAGAGGAGCAGAGAGGAAC 59.524 57.143 0.00 0.00 0.00 3.62
1975 2022 1.357420 AGTCAGAGGAGCAGAGAGGAA 59.643 52.381 0.00 0.00 0.00 3.36
1976 2023 0.998928 AGTCAGAGGAGCAGAGAGGA 59.001 55.000 0.00 0.00 0.00 3.71
1977 2024 1.392589 GAGTCAGAGGAGCAGAGAGG 58.607 60.000 0.00 0.00 0.00 3.69
1978 2025 1.392589 GGAGTCAGAGGAGCAGAGAG 58.607 60.000 0.00 0.00 0.00 3.20
1979 2026 0.393673 CGGAGTCAGAGGAGCAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
1980 2027 2.003658 GCGGAGTCAGAGGAGCAGAG 62.004 65.000 0.00 0.00 0.00 3.35
1981 2028 2.049185 GCGGAGTCAGAGGAGCAGA 61.049 63.158 0.00 0.00 0.00 4.26
1982 2029 2.003658 GAGCGGAGTCAGAGGAGCAG 62.004 65.000 0.00 0.00 0.00 4.24
1983 2030 2.036414 AGCGGAGTCAGAGGAGCA 59.964 61.111 0.00 0.00 0.00 4.26
1984 2031 2.781158 GGAGCGGAGTCAGAGGAGC 61.781 68.421 0.00 0.00 0.00 4.70
1985 2032 2.124693 GGGAGCGGAGTCAGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
1986 2033 2.043852 GGGAGCGGAGTCAGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
1987 2034 3.522731 CGGGAGCGGAGTCAGAGG 61.523 72.222 0.00 0.00 0.00 3.69
1988 2035 3.522731 CCGGGAGCGGAGTCAGAG 61.523 72.222 0.00 0.00 0.00 3.35
1989 2036 4.043100 TCCGGGAGCGGAGTCAGA 62.043 66.667 0.00 0.00 33.62 3.27
2003 2050 4.208686 GTAGGCTGGTCCGCTCCG 62.209 72.222 0.00 0.00 40.77 4.63
2004 2051 3.075005 TGTAGGCTGGTCCGCTCC 61.075 66.667 0.00 0.00 40.77 4.70
2005 2052 2.496817 CTGTAGGCTGGTCCGCTC 59.503 66.667 0.00 0.00 40.77 5.03
2006 2053 3.775654 GCTGTAGGCTGGTCCGCT 61.776 66.667 0.00 0.00 40.77 5.52
2015 2062 1.398390 CCGTCAAAATGAGCTGTAGGC 59.602 52.381 0.00 0.00 42.19 3.93
2016 2063 2.932614 CTCCGTCAAAATGAGCTGTAGG 59.067 50.000 0.00 0.00 0.00 3.18
2017 2064 2.349886 GCTCCGTCAAAATGAGCTGTAG 59.650 50.000 0.00 0.00 46.19 2.74
2018 2065 2.346803 GCTCCGTCAAAATGAGCTGTA 58.653 47.619 0.00 0.00 46.19 2.74
2019 2066 1.160137 GCTCCGTCAAAATGAGCTGT 58.840 50.000 0.00 0.00 46.19 4.40
2020 2067 3.984292 GCTCCGTCAAAATGAGCTG 57.016 52.632 0.00 0.00 46.19 4.24
2022 2069 1.425428 CCGCTCCGTCAAAATGAGC 59.575 57.895 0.00 0.00 46.21 4.26
2023 2070 1.425428 GCCGCTCCGTCAAAATGAG 59.575 57.895 0.00 0.00 0.00 2.90
2024 2071 2.387445 CGCCGCTCCGTCAAAATGA 61.387 57.895 0.00 0.00 0.00 2.57
2025 2072 1.906994 TTCGCCGCTCCGTCAAAATG 61.907 55.000 0.00 0.00 0.00 2.32
2026 2073 1.231958 TTTCGCCGCTCCGTCAAAAT 61.232 50.000 0.00 0.00 0.00 1.82
2027 2074 1.437772 TTTTCGCCGCTCCGTCAAAA 61.438 50.000 0.00 0.00 0.00 2.44
2028 2075 1.888172 TTTTCGCCGCTCCGTCAAA 60.888 52.632 0.00 0.00 0.00 2.69
2029 2076 2.280254 TTTTCGCCGCTCCGTCAA 60.280 55.556 0.00 0.00 0.00 3.18
2030 2077 3.039588 GTTTTCGCCGCTCCGTCA 61.040 61.111 0.00 0.00 0.00 4.35
2031 2078 3.785499 GGTTTTCGCCGCTCCGTC 61.785 66.667 0.00 0.00 0.00 4.79
2034 2081 3.431725 CTGGGTTTTCGCCGCTCC 61.432 66.667 0.00 0.00 0.00 4.70
2035 2082 4.103103 GCTGGGTTTTCGCCGCTC 62.103 66.667 0.00 0.00 39.20 5.03
2036 2083 4.643387 AGCTGGGTTTTCGCCGCT 62.643 61.111 0.00 0.00 45.14 5.52
2037 2084 4.103103 GAGCTGGGTTTTCGCCGC 62.103 66.667 0.00 0.00 41.65 6.53
2038 2085 3.431725 GGAGCTGGGTTTTCGCCG 61.432 66.667 0.00 0.00 0.00 6.46
2039 2086 3.062466 GGGAGCTGGGTTTTCGCC 61.062 66.667 0.00 0.00 0.00 5.54
2040 2087 3.062466 GGGGAGCTGGGTTTTCGC 61.062 66.667 0.00 0.00 0.00 4.70
2041 2088 1.675641 CTGGGGAGCTGGGTTTTCG 60.676 63.158 0.00 0.00 0.00 3.46
2042 2089 1.979155 GCTGGGGAGCTGGGTTTTC 60.979 63.158 0.00 0.00 0.00 2.29
2043 2090 2.118294 GCTGGGGAGCTGGGTTTT 59.882 61.111 0.00 0.00 0.00 2.43
2044 2091 2.860971 AGCTGGGGAGCTGGGTTT 60.861 61.111 0.00 0.00 44.44 3.27
2045 2092 3.334054 GAGCTGGGGAGCTGGGTT 61.334 66.667 0.24 0.00 46.36 4.11
2063 2110 3.992317 GTATCCCTCCGCTCCGCC 61.992 72.222 0.00 0.00 0.00 6.13
2064 2111 3.992317 GGTATCCCTCCGCTCCGC 61.992 72.222 0.00 0.00 0.00 5.54
2065 2112 3.671411 CGGTATCCCTCCGCTCCG 61.671 72.222 0.00 0.00 41.48 4.63
2066 2113 1.831286 TTCGGTATCCCTCCGCTCC 60.831 63.158 0.00 0.00 46.49 4.70
2067 2114 1.363080 GTTCGGTATCCCTCCGCTC 59.637 63.158 0.00 0.00 46.49 5.03
2068 2115 1.380785 TGTTCGGTATCCCTCCGCT 60.381 57.895 0.00 0.00 46.49 5.52
2069 2116 1.067582 CTGTTCGGTATCCCTCCGC 59.932 63.158 0.00 0.00 46.49 5.54
2071 2118 2.041206 GCCCTGTTCGGTATCCCTCC 62.041 65.000 0.00 0.00 0.00 4.30
2072 2119 1.446366 GCCCTGTTCGGTATCCCTC 59.554 63.158 0.00 0.00 0.00 4.30
2073 2120 2.070650 GGCCCTGTTCGGTATCCCT 61.071 63.158 0.00 0.00 0.00 4.20
2074 2121 1.632965 AAGGCCCTGTTCGGTATCCC 61.633 60.000 0.00 0.00 0.00 3.85
2075 2122 1.070289 CTAAGGCCCTGTTCGGTATCC 59.930 57.143 0.00 0.00 0.00 2.59
2076 2123 1.761198 ACTAAGGCCCTGTTCGGTATC 59.239 52.381 0.00 0.00 0.00 2.24
2077 2124 1.761198 GACTAAGGCCCTGTTCGGTAT 59.239 52.381 0.00 0.00 0.00 2.73
2078 2125 1.188863 GACTAAGGCCCTGTTCGGTA 58.811 55.000 0.00 0.00 0.00 4.02
2079 2126 0.834687 TGACTAAGGCCCTGTTCGGT 60.835 55.000 0.00 0.00 0.00 4.69
2080 2127 0.391263 GTGACTAAGGCCCTGTTCGG 60.391 60.000 0.00 0.00 0.00 4.30
2081 2128 0.320374 TGTGACTAAGGCCCTGTTCG 59.680 55.000 0.00 0.00 0.00 3.95
2082 2129 2.237392 AGATGTGACTAAGGCCCTGTTC 59.763 50.000 0.00 0.00 0.00 3.18
2083 2130 2.269940 AGATGTGACTAAGGCCCTGTT 58.730 47.619 0.00 0.00 0.00 3.16
2084 2131 1.958288 AGATGTGACTAAGGCCCTGT 58.042 50.000 0.00 0.00 0.00 4.00
2085 2132 3.356529 AAAGATGTGACTAAGGCCCTG 57.643 47.619 0.00 0.00 0.00 4.45
2086 2133 4.162509 GTCTAAAGATGTGACTAAGGCCCT 59.837 45.833 0.00 0.00 0.00 5.19
2087 2134 4.081087 TGTCTAAAGATGTGACTAAGGCCC 60.081 45.833 0.00 0.00 0.00 5.80
2088 2135 5.086104 TGTCTAAAGATGTGACTAAGGCC 57.914 43.478 0.00 0.00 0.00 5.19
2089 2136 6.341316 TCATGTCTAAAGATGTGACTAAGGC 58.659 40.000 0.00 0.00 0.00 4.35
2090 2137 8.824781 CATTCATGTCTAAAGATGTGACTAAGG 58.175 37.037 0.00 0.00 0.00 2.69
2207 2254 2.325583 ACCACTGCGTTTCAGAAAGA 57.674 45.000 0.00 0.00 45.72 2.52
2390 2439 9.195411 GCAGAGAATGAAGAGAAAGATATACAG 57.805 37.037 0.00 0.00 0.00 2.74
2391 2440 7.864882 CGCAGAGAATGAAGAGAAAGATATACA 59.135 37.037 0.00 0.00 0.00 2.29
2392 2441 7.328249 CCGCAGAGAATGAAGAGAAAGATATAC 59.672 40.741 0.00 0.00 0.00 1.47
2393 2442 7.014711 ACCGCAGAGAATGAAGAGAAAGATATA 59.985 37.037 0.00 0.00 0.00 0.86
2394 2443 6.183360 ACCGCAGAGAATGAAGAGAAAGATAT 60.183 38.462 0.00 0.00 0.00 1.63
2395 2444 5.127845 ACCGCAGAGAATGAAGAGAAAGATA 59.872 40.000 0.00 0.00 0.00 1.98
2396 2445 4.081198 ACCGCAGAGAATGAAGAGAAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
2397 2446 3.259374 ACCGCAGAGAATGAAGAGAAAGA 59.741 43.478 0.00 0.00 0.00 2.52
2398 2447 3.594134 ACCGCAGAGAATGAAGAGAAAG 58.406 45.455 0.00 0.00 0.00 2.62
2399 2448 3.685139 ACCGCAGAGAATGAAGAGAAA 57.315 42.857 0.00 0.00 0.00 2.52
2400 2449 3.685139 AACCGCAGAGAATGAAGAGAA 57.315 42.857 0.00 0.00 0.00 2.87
2576 2627 3.605749 TTCAAGGGCCCTTCGAGCG 62.606 63.158 35.15 22.46 33.42 5.03
2621 2672 6.708054 CAGTAATTTTAACCCCAATTGCAACA 59.292 34.615 0.00 0.00 29.96 3.33
2708 2759 3.539604 AGATGATTTCGAAGGCAAGGAG 58.460 45.455 0.00 0.00 0.00 3.69
2966 3017 0.463116 TCGCAGATCAGCACATGCAT 60.463 50.000 10.95 0.00 45.16 3.96
3041 3092 3.876309 TGCTGGGGAAAAGAACTACTT 57.124 42.857 0.00 0.00 40.98 2.24
3136 3187 5.566230 CGCCACTTTAGAAAGGTACTGTAGT 60.566 44.000 6.94 0.00 40.86 2.73
3137 3188 4.863131 CGCCACTTTAGAAAGGTACTGTAG 59.137 45.833 6.94 0.00 40.86 2.74
3138 3189 4.523943 TCGCCACTTTAGAAAGGTACTGTA 59.476 41.667 6.94 0.00 40.86 2.74
3139 3190 3.322828 TCGCCACTTTAGAAAGGTACTGT 59.677 43.478 6.94 0.00 40.86 3.55
3140 3191 3.921677 TCGCCACTTTAGAAAGGTACTG 58.078 45.455 6.94 0.00 40.86 2.74
3142 3193 4.174762 CTCTCGCCACTTTAGAAAGGTAC 58.825 47.826 6.94 0.00 40.31 3.34
3270 3331 6.451064 AAAAACAGTGCTAACTTTGCTACT 57.549 33.333 0.00 0.00 32.98 2.57
3339 3400 3.716872 GGGGGAGTAGATTGGAATTCTGA 59.283 47.826 5.23 0.00 0.00 3.27
3362 3423 4.034279 GGGTCAAAAACGCGCTTATATACA 59.966 41.667 5.73 0.00 0.00 2.29
3363 3424 4.271776 AGGGTCAAAAACGCGCTTATATAC 59.728 41.667 5.73 0.00 45.14 1.47
3364 3425 4.444536 AGGGTCAAAAACGCGCTTATATA 58.555 39.130 5.73 0.00 45.14 0.86
3392 3458 8.567948 CCCATAATATAAGAGCGTTTTCACATT 58.432 33.333 0.00 0.00 0.00 2.71
3393 3459 7.174946 CCCCATAATATAAGAGCGTTTTCACAT 59.825 37.037 0.00 0.00 0.00 3.21
3394 3460 6.485313 CCCCATAATATAAGAGCGTTTTCACA 59.515 38.462 0.00 0.00 0.00 3.58
3395 3461 6.567891 GCCCCATAATATAAGAGCGTTTTCAC 60.568 42.308 0.00 0.00 0.00 3.18
3396 3462 5.472137 GCCCCATAATATAAGAGCGTTTTCA 59.528 40.000 0.00 0.00 0.00 2.69
3397 3463 5.390567 CGCCCCATAATATAAGAGCGTTTTC 60.391 44.000 0.00 0.00 37.69 2.29
3398 3464 4.454504 CGCCCCATAATATAAGAGCGTTTT 59.545 41.667 0.00 0.00 37.69 2.43
3399 3465 4.000988 CGCCCCATAATATAAGAGCGTTT 58.999 43.478 0.00 0.00 37.69 3.60
3400 3466 3.596214 CGCCCCATAATATAAGAGCGTT 58.404 45.455 0.00 0.00 37.69 4.84
3401 3467 2.093658 CCGCCCCATAATATAAGAGCGT 60.094 50.000 0.00 0.00 40.66 5.07
3402 3468 2.167693 TCCGCCCCATAATATAAGAGCG 59.832 50.000 0.00 0.00 41.84 5.03
3403 3469 3.432326 CCTCCGCCCCATAATATAAGAGC 60.432 52.174 0.00 0.00 0.00 4.09
3404 3470 3.134804 CCCTCCGCCCCATAATATAAGAG 59.865 52.174 0.00 0.00 0.00 2.85
3405 3471 3.112263 CCCTCCGCCCCATAATATAAGA 58.888 50.000 0.00 0.00 0.00 2.10
3406 3472 3.112263 TCCCTCCGCCCCATAATATAAG 58.888 50.000 0.00 0.00 0.00 1.73
3407 3473 3.112263 CTCCCTCCGCCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
3408 3474 2.045326 ACTCCCTCCGCCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
3409 3475 1.203440 ACTCCCTCCGCCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
3410 3476 0.192566 ACTCCCTCCGCCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
3411 3477 0.192566 TACTCCCTCCGCCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
3412 3478 0.192566 ATACTCCCTCCGCCCCATAA 59.807 55.000 0.00 0.00 0.00 1.90
3413 3479 0.544357 CATACTCCCTCCGCCCCATA 60.544 60.000 0.00 0.00 0.00 2.74
3414 3480 1.843376 CATACTCCCTCCGCCCCAT 60.843 63.158 0.00 0.00 0.00 4.00
3415 3481 2.445845 CATACTCCCTCCGCCCCA 60.446 66.667 0.00 0.00 0.00 4.96
3416 3482 2.446036 ACATACTCCCTCCGCCCC 60.446 66.667 0.00 0.00 0.00 5.80
3417 3483 0.178970 TAGACATACTCCCTCCGCCC 60.179 60.000 0.00 0.00 0.00 6.13
3447 3513 6.528774 GCGGAAATTTGGATAACGTAAACAAT 59.471 34.615 0.00 0.00 0.00 2.71
3459 3525 3.264104 CAGCAAATGCGGAAATTTGGAT 58.736 40.909 14.51 0.00 44.30 3.41
3507 3573 5.065218 GCGTGAACTTCATACTTGGAATGAT 59.935 40.000 0.00 0.00 33.52 2.45
3513 3579 2.066262 ACGCGTGAACTTCATACTTGG 58.934 47.619 12.93 0.00 0.00 3.61
3539 3605 2.035449 GGGGCTTGTAACTTGGTGAAAC 59.965 50.000 0.00 0.00 0.00 2.78
3622 3688 8.564574 TGGTTCTACATAATTGTGAGAAAACAC 58.435 33.333 9.40 0.00 40.68 3.32
3623 3689 8.684386 TGGTTCTACATAATTGTGAGAAAACA 57.316 30.769 9.40 11.71 36.53 2.83
3626 3692 8.243426 GCAATGGTTCTACATAATTGTGAGAAA 58.757 33.333 9.40 1.54 36.53 2.52
3627 3693 7.413988 CGCAATGGTTCTACATAATTGTGAGAA 60.414 37.037 9.40 10.21 39.80 2.87
3628 3694 6.037062 CGCAATGGTTCTACATAATTGTGAGA 59.963 38.462 9.40 4.97 39.80 3.27
3629 3695 6.183360 ACGCAATGGTTCTACATAATTGTGAG 60.183 38.462 9.40 2.75 39.80 3.51
3653 3719 4.652822 ACCTTTCATAACTGTTGGAGGAC 58.347 43.478 2.69 0.00 0.00 3.85
3659 3725 9.003658 AGAAACATAGACCTTTCATAACTGTTG 57.996 33.333 2.69 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.