Multiple sequence alignment - TraesCS3B01G308000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G308000 chr3B 100.000 5535 0 0 1 5535 495100726 495106260 0.000000e+00 10222.0
1 TraesCS3B01G308000 chr3B 88.414 1709 130 41 2536 4227 56454114 56452457 0.000000e+00 1997.0
2 TraesCS3B01G308000 chr3B 80.851 376 34 16 1211 1576 56455687 56455340 1.530000e-65 261.0
3 TraesCS3B01G308000 chr3B 100.000 32 0 0 853 884 56455963 56455932 5.990000e-05 60.2
4 TraesCS3B01G308000 chr3D 93.977 3968 158 42 682 4625 379486518 379490428 0.000000e+00 5928.0
5 TraesCS3B01G308000 chr3D 89.786 607 47 8 45 643 379485711 379486310 0.000000e+00 763.0
6 TraesCS3B01G308000 chr3D 94.872 39 2 0 2528 2566 33905183 33905145 1.660000e-05 62.1
7 TraesCS3B01G308000 chr3A 90.932 3893 213 77 622 4446 503703170 503706990 0.000000e+00 5105.0
8 TraesCS3B01G308000 chr3A 93.325 764 49 1 2536 3297 46458898 46458135 0.000000e+00 1127.0
9 TraesCS3B01G308000 chr3A 90.232 819 72 6 2484 3297 46213553 46212738 0.000000e+00 1062.0
10 TraesCS3B01G308000 chr3A 87.709 838 70 23 3400 4228 46457872 46457059 0.000000e+00 946.0
11 TraesCS3B01G308000 chr3A 85.986 842 76 30 3400 4227 46212453 46211640 0.000000e+00 863.0
12 TraesCS3B01G308000 chr3A 90.393 458 24 8 143 591 503702412 503702858 7.990000e-163 584.0
13 TraesCS3B01G308000 chr3A 79.727 513 72 20 1197 1694 46214928 46214433 5.310000e-90 342.0
14 TraesCS3B01G308000 chr3A 80.533 375 36 15 1211 1576 46460684 46460338 2.560000e-63 254.0
15 TraesCS3B01G308000 chr3A 84.722 144 8 6 23 160 503702025 503702160 1.250000e-26 132.0
16 TraesCS3B01G308000 chr3A 88.182 110 9 2 4538 4643 46211179 46211070 1.620000e-25 128.0
17 TraesCS3B01G308000 chr3A 83.133 83 4 3 2484 2566 46515250 46515178 3.580000e-07 67.6
18 TraesCS3B01G308000 chr3A 94.595 37 0 1 4270 4304 46457064 46457028 7.750000e-04 56.5
19 TraesCS3B01G308000 chr2B 98.248 856 12 1 4678 5530 514325750 514326605 0.000000e+00 1495.0
20 TraesCS3B01G308000 chr2B 97.680 862 16 2 4678 5535 412289297 412288436 0.000000e+00 1478.0
21 TraesCS3B01G308000 chr6B 97.912 862 14 3 4674 5535 515574424 515573567 0.000000e+00 1489.0
22 TraesCS3B01G308000 chr7A 97.909 861 13 3 4678 5535 517895857 517896715 0.000000e+00 1485.0
23 TraesCS3B01G308000 chr7B 97.561 861 17 2 4678 5535 244211420 244212279 0.000000e+00 1471.0
24 TraesCS3B01G308000 chr7B 97.445 861 18 2 4678 5535 115691754 115690895 0.000000e+00 1465.0
25 TraesCS3B01G308000 chr1B 97.445 861 19 1 4678 5535 297303132 297303992 0.000000e+00 1465.0
26 TraesCS3B01G308000 chr4B 97.329 861 19 2 4678 5535 590061820 590060961 0.000000e+00 1459.0
27 TraesCS3B01G308000 chr1A 97.096 861 20 2 4678 5535 159081869 159081011 0.000000e+00 1447.0
28 TraesCS3B01G308000 chr2A 74.937 798 161 36 2523 3296 33175415 33176197 4.130000e-86 329.0
29 TraesCS3B01G308000 chr2A 83.838 297 48 0 3693 3989 33176543 33176839 3.260000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G308000 chr3B 495100726 495106260 5534 False 10222.000000 10222 100.000000 1 5535 1 chr3B.!!$F1 5534
1 TraesCS3B01G308000 chr3B 56452457 56455963 3506 True 772.733333 1997 89.755000 853 4227 3 chr3B.!!$R1 3374
2 TraesCS3B01G308000 chr3D 379485711 379490428 4717 False 3345.500000 5928 91.881500 45 4625 2 chr3D.!!$F1 4580
3 TraesCS3B01G308000 chr3A 503702025 503706990 4965 False 1940.333333 5105 88.682333 23 4446 3 chr3A.!!$F1 4423
4 TraesCS3B01G308000 chr3A 46211070 46214928 3858 True 598.750000 1062 86.031750 1197 4643 4 chr3A.!!$R2 3446
5 TraesCS3B01G308000 chr3A 46457028 46460684 3656 True 595.875000 1127 89.040500 1211 4304 4 chr3A.!!$R3 3093
6 TraesCS3B01G308000 chr2B 514325750 514326605 855 False 1495.000000 1495 98.248000 4678 5530 1 chr2B.!!$F1 852
7 TraesCS3B01G308000 chr2B 412288436 412289297 861 True 1478.000000 1478 97.680000 4678 5535 1 chr2B.!!$R1 857
8 TraesCS3B01G308000 chr6B 515573567 515574424 857 True 1489.000000 1489 97.912000 4674 5535 1 chr6B.!!$R1 861
9 TraesCS3B01G308000 chr7A 517895857 517896715 858 False 1485.000000 1485 97.909000 4678 5535 1 chr7A.!!$F1 857
10 TraesCS3B01G308000 chr7B 244211420 244212279 859 False 1471.000000 1471 97.561000 4678 5535 1 chr7B.!!$F1 857
11 TraesCS3B01G308000 chr7B 115690895 115691754 859 True 1465.000000 1465 97.445000 4678 5535 1 chr7B.!!$R1 857
12 TraesCS3B01G308000 chr1B 297303132 297303992 860 False 1465.000000 1465 97.445000 4678 5535 1 chr1B.!!$F1 857
13 TraesCS3B01G308000 chr4B 590060961 590061820 859 True 1459.000000 1459 97.329000 4678 5535 1 chr4B.!!$R1 857
14 TraesCS3B01G308000 chr1A 159081011 159081869 858 True 1447.000000 1447 97.096000 4678 5535 1 chr1A.!!$R1 857
15 TraesCS3B01G308000 chr2A 33175415 33176839 1424 False 306.000000 329 79.387500 2523 3989 2 chr2A.!!$F1 1466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 1615 0.036164 ACACACACACACACACACCT 59.964 50.000 0.00 0.0 0.00 4.00 F
1032 1822 0.179153 TCTCATCTTCGCTCTGCACG 60.179 55.000 0.00 0.0 0.00 5.34 F
2252 3203 0.034756 GCCTTGTTCCCCGCAAATTT 59.965 50.000 0.00 0.0 0.00 1.82 F
2569 4330 1.962144 CACGTACCTGAGGAACGGT 59.038 57.895 4.99 0.0 40.81 4.83 F
3914 6064 0.984230 TGGAGAAGACGGCCAAGAAT 59.016 50.000 2.24 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 2798 0.106116 CCCCTCCTCGTTAGGCTAGT 60.106 60.000 0.0 0.00 43.31 2.57 R
2915 4718 0.107410 AACTTGCTCACCGTGTCCAA 60.107 50.000 0.0 2.95 0.00 3.53 R
3331 5430 0.672342 AACGGCTATGGCTAGTACGG 59.328 55.000 0.0 0.00 38.73 4.02 R
4331 6615 0.613260 ACATCCACGTATGCACCACT 59.387 50.000 0.0 0.00 0.00 4.00 R
4781 7185 1.889573 GGGAGCTACGCATGAAGGC 60.890 63.158 0.0 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.610040 GAAATTCCGGGGCATTTTTCT 57.390 42.857 0.00 0.00 0.00 2.52
21 22 4.729227 GAAATTCCGGGGCATTTTTCTA 57.271 40.909 0.00 0.00 0.00 2.10
23 24 2.891191 TTCCGGGGCATTTTTCTAGT 57.109 45.000 0.00 0.00 0.00 2.57
24 25 4.513406 ATTCCGGGGCATTTTTCTAGTA 57.487 40.909 0.00 0.00 0.00 1.82
28 29 3.128068 CCGGGGCATTTTTCTAGTACAAC 59.872 47.826 0.00 0.00 0.00 3.32
41 42 7.843490 TTCTAGTACAACACAGATATTTGGC 57.157 36.000 0.00 0.00 0.00 4.52
68 72 2.231618 GCCAGTTACTAGCGAGCGC 61.232 63.158 6.78 6.78 42.33 5.92
120 130 6.938030 AGACAACGGTCAATTGGATTAGTTAA 59.062 34.615 5.42 0.00 46.80 2.01
195 481 7.466320 GCCAAGTAATTACGTATGTGGTTTAGG 60.466 40.741 9.91 2.19 0.00 2.69
196 482 7.404203 CAAGTAATTACGTATGTGGTTTAGGC 58.596 38.462 9.91 0.00 0.00 3.93
197 483 5.750067 AGTAATTACGTATGTGGTTTAGGCG 59.250 40.000 9.91 0.00 0.00 5.52
198 484 3.591196 TTACGTATGTGGTTTAGGCGT 57.409 42.857 0.00 0.00 35.29 5.68
199 485 2.460757 ACGTATGTGGTTTAGGCGTT 57.539 45.000 0.00 0.00 0.00 4.84
200 486 2.769893 ACGTATGTGGTTTAGGCGTTT 58.230 42.857 0.00 0.00 0.00 3.60
201 487 3.924144 ACGTATGTGGTTTAGGCGTTTA 58.076 40.909 0.00 0.00 0.00 2.01
202 488 4.314121 ACGTATGTGGTTTAGGCGTTTAA 58.686 39.130 0.00 0.00 0.00 1.52
241 528 2.211250 TCGCAACTGGTACTAGGTCT 57.789 50.000 11.30 0.00 0.00 3.85
263 550 0.036952 CTCGGCCAGAACATGACACT 60.037 55.000 2.24 0.00 0.00 3.55
418 712 1.735386 GGTTAAAACCGAGAGAGCCC 58.265 55.000 0.00 0.00 39.66 5.19
420 714 2.551504 GGTTAAAACCGAGAGAGCCCAA 60.552 50.000 0.00 0.00 39.66 4.12
432 726 3.353836 GCCCAAGCAAGCGAACGA 61.354 61.111 0.00 0.00 39.53 3.85
503 797 4.047059 ATGCGTCCGGTTCGTCGT 62.047 61.111 18.83 11.80 0.00 4.34
539 833 1.411246 CCCCCGACAACGATCTTCATA 59.589 52.381 0.00 0.00 42.66 2.15
580 874 1.874872 CGTTTAACTTTTCCGAGGCCA 59.125 47.619 5.01 0.00 0.00 5.36
755 1522 2.279451 TGGAGATGCCGAATCGCG 60.279 61.111 0.00 0.00 40.54 5.87
777 1548 0.668706 GCCCATCGATCCGTCTCATG 60.669 60.000 0.00 0.00 0.00 3.07
778 1549 0.037882 CCCATCGATCCGTCTCATGG 60.038 60.000 0.00 0.00 34.80 3.66
811 1588 0.248843 TCAGATATGCGCCACACACA 59.751 50.000 4.18 0.00 0.00 3.72
815 1592 0.605050 ATATGCGCCACACACACACA 60.605 50.000 4.18 0.00 0.00 3.72
817 1594 3.504273 GCGCCACACACACACACA 61.504 61.111 0.00 0.00 0.00 3.72
818 1595 2.403186 CGCCACACACACACACAC 59.597 61.111 0.00 0.00 0.00 3.82
819 1596 2.394563 CGCCACACACACACACACA 61.395 57.895 0.00 0.00 0.00 3.72
820 1597 1.136565 GCCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
821 1598 1.581727 GCCACACACACACACACACA 61.582 55.000 0.00 0.00 0.00 3.72
824 1601 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
825 1602 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
827 1604 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
829 1606 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
830 1607 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
831 1608 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
833 1610 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
834 1611 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
835 1612 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
836 1613 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
837 1614 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
838 1615 0.036164 ACACACACACACACACACCT 59.964 50.000 0.00 0.00 0.00 4.00
839 1616 0.447406 CACACACACACACACACCTG 59.553 55.000 0.00 0.00 0.00 4.00
840 1617 0.676466 ACACACACACACACACCTGG 60.676 55.000 0.00 0.00 0.00 4.45
841 1618 1.077787 ACACACACACACACCTGGG 60.078 57.895 0.00 0.00 0.00 4.45
842 1619 2.124320 ACACACACACACCTGGGC 60.124 61.111 0.00 0.00 0.00 5.36
843 1620 2.906897 CACACACACACCTGGGCC 60.907 66.667 0.00 0.00 0.00 5.80
905 1682 2.355818 GGTACCACTCCAGACCAAATCC 60.356 54.545 7.15 0.00 31.89 3.01
939 1718 1.661498 CTGCCTAGCTCTGCTCACGA 61.661 60.000 8.64 0.00 40.44 4.35
944 1723 0.805614 TAGCTCTGCTCACGACACTC 59.194 55.000 0.00 0.00 40.44 3.51
1032 1822 0.179153 TCTCATCTTCGCTCTGCACG 60.179 55.000 0.00 0.00 0.00 5.34
1306 2099 1.982395 CTCCCTACGTGGCTGGTGA 60.982 63.158 0.00 0.00 0.00 4.02
1320 2113 2.507484 CTGGTGAGTGAATTGCTTCCA 58.493 47.619 0.00 0.00 0.00 3.53
1321 2114 2.486982 CTGGTGAGTGAATTGCTTCCAG 59.513 50.000 12.53 12.53 34.68 3.86
1322 2115 2.106338 TGGTGAGTGAATTGCTTCCAGA 59.894 45.455 0.00 0.00 0.00 3.86
1323 2116 3.149196 GGTGAGTGAATTGCTTCCAGAA 58.851 45.455 0.00 0.00 0.00 3.02
1377 2205 6.349300 TCCTTCCTAAAGATTCTTCATTCCG 58.651 40.000 0.00 0.00 34.14 4.30
1378 2206 6.070194 TCCTTCCTAAAGATTCTTCATTCCGT 60.070 38.462 0.00 0.00 34.14 4.69
1379 2207 6.599638 CCTTCCTAAAGATTCTTCATTCCGTT 59.400 38.462 0.00 0.00 34.14 4.44
1380 2208 6.985188 TCCTAAAGATTCTTCATTCCGTTG 57.015 37.500 0.00 0.00 0.00 4.10
1381 2209 6.707290 TCCTAAAGATTCTTCATTCCGTTGA 58.293 36.000 0.00 0.00 0.00 3.18
1383 2211 7.495934 TCCTAAAGATTCTTCATTCCGTTGATC 59.504 37.037 0.00 0.00 0.00 2.92
1384 2212 5.725110 AAGATTCTTCATTCCGTTGATCG 57.275 39.130 0.00 0.00 39.52 3.69
1385 2213 5.011090 AGATTCTTCATTCCGTTGATCGA 57.989 39.130 0.00 0.00 42.86 3.59
1386 2214 5.419542 AGATTCTTCATTCCGTTGATCGAA 58.580 37.500 0.00 0.00 42.86 3.71
1387 2215 5.874810 AGATTCTTCATTCCGTTGATCGAAA 59.125 36.000 0.00 0.00 42.86 3.46
1388 2216 5.933187 TTCTTCATTCCGTTGATCGAAAA 57.067 34.783 0.00 0.00 42.86 2.29
1389 2217 5.933187 TCTTCATTCCGTTGATCGAAAAA 57.067 34.783 0.00 0.00 42.86 1.94
1390 2218 5.927030 TCTTCATTCCGTTGATCGAAAAAG 58.073 37.500 0.00 0.00 42.86 2.27
1391 2219 5.699001 TCTTCATTCCGTTGATCGAAAAAGA 59.301 36.000 0.00 0.00 42.86 2.52
1392 2220 6.371548 TCTTCATTCCGTTGATCGAAAAAGAT 59.628 34.615 0.00 0.00 42.86 2.40
1393 2221 6.494893 TCATTCCGTTGATCGAAAAAGATT 57.505 33.333 0.00 0.00 42.86 2.40
1394 2222 6.542852 TCATTCCGTTGATCGAAAAAGATTC 58.457 36.000 0.00 0.00 42.86 2.52
1395 2223 4.939509 TCCGTTGATCGAAAAAGATTCC 57.060 40.909 0.00 0.00 42.86 3.01
1396 2224 4.575885 TCCGTTGATCGAAAAAGATTCCT 58.424 39.130 0.00 0.00 42.86 3.36
1397 2225 4.391830 TCCGTTGATCGAAAAAGATTCCTG 59.608 41.667 0.00 0.00 42.86 3.86
1398 2226 4.391830 CCGTTGATCGAAAAAGATTCCTGA 59.608 41.667 0.00 0.00 42.86 3.86
1399 2227 5.065218 CCGTTGATCGAAAAAGATTCCTGAT 59.935 40.000 0.00 0.00 42.86 2.90
1400 2228 6.403636 CCGTTGATCGAAAAAGATTCCTGATT 60.404 38.462 0.00 0.00 42.86 2.57
1401 2229 6.684555 CGTTGATCGAAAAAGATTCCTGATTC 59.315 38.462 0.00 0.00 42.86 2.52
1402 2230 6.683974 TGATCGAAAAAGATTCCTGATTCC 57.316 37.500 0.00 0.00 0.00 3.01
1429 2257 5.227908 ACTGACGTACTAACCTCAAACATG 58.772 41.667 0.00 0.00 0.00 3.21
1436 2265 7.761249 ACGTACTAACCTCAAACATGTTATACC 59.239 37.037 12.39 0.00 0.00 2.73
1721 2628 1.528076 AACGCCAAGCATCCACACA 60.528 52.632 0.00 0.00 0.00 3.72
1762 2669 9.790344 AAAAGCAAAGCATATATGATACTCTCT 57.210 29.630 17.10 0.00 0.00 3.10
1763 2670 9.434420 AAAGCAAAGCATATATGATACTCTCTC 57.566 33.333 17.10 0.00 0.00 3.20
1764 2671 8.365060 AGCAAAGCATATATGATACTCTCTCT 57.635 34.615 17.10 0.00 0.00 3.10
1792 2701 4.575885 TCTGCGGGGAAAGCATATATTAC 58.424 43.478 0.00 0.00 44.26 1.89
1806 2715 6.863645 AGCATATATTACACTCGTACAAGCAG 59.136 38.462 0.00 0.00 0.00 4.24
1875 2794 4.330347 GCTCATCAGCGTATCGATCTAGTA 59.670 45.833 0.00 0.00 35.39 1.82
1879 2798 8.488651 TCATCAGCGTATCGATCTAGTAATAA 57.511 34.615 0.00 0.00 0.00 1.40
2023 2964 9.563898 CGACACTGATGTACTAATTTACACTAA 57.436 33.333 0.00 0.00 39.95 2.24
2085 3031 2.887568 GCATCTCGGCACTCACGG 60.888 66.667 0.00 0.00 0.00 4.94
2142 3093 0.894141 TCTCTGCTGCTCCACTCTTC 59.106 55.000 0.00 0.00 0.00 2.87
2166 3117 2.736995 CACGACGGCGACAATGGT 60.737 61.111 22.49 0.00 41.64 3.55
2182 3133 0.678950 TGGTGTCGCTGTCTCATGAA 59.321 50.000 0.00 0.00 0.00 2.57
2183 3134 1.337167 TGGTGTCGCTGTCTCATGAAG 60.337 52.381 0.00 0.00 0.00 3.02
2184 3135 1.337260 GGTGTCGCTGTCTCATGAAGT 60.337 52.381 0.00 0.00 0.00 3.01
2185 3136 1.989165 GTGTCGCTGTCTCATGAAGTC 59.011 52.381 0.00 0.00 0.00 3.01
2186 3137 1.613437 TGTCGCTGTCTCATGAAGTCA 59.387 47.619 0.00 0.00 0.00 3.41
2187 3138 2.232208 TGTCGCTGTCTCATGAAGTCAT 59.768 45.455 0.00 0.00 36.96 3.06
2252 3203 0.034756 GCCTTGTTCCCCGCAAATTT 59.965 50.000 0.00 0.00 0.00 1.82
2255 3206 2.028203 CCTTGTTCCCCGCAAATTTCAT 60.028 45.455 0.00 0.00 0.00 2.57
2346 3957 2.633657 CTGTGTGCGTGCCACTTC 59.366 61.111 12.45 0.00 44.92 3.01
2394 4016 4.188462 TGCAGGTGTATGTTGCAGTATAC 58.812 43.478 12.83 12.83 42.41 1.47
2397 4019 6.183360 TGCAGGTGTATGTTGCAGTATACTAT 60.183 38.462 17.80 0.00 42.41 2.12
2523 4245 2.286950 CCGCAATAATTGATCGGGTGTG 60.287 50.000 0.00 0.00 34.14 3.82
2569 4330 1.962144 CACGTACCTGAGGAACGGT 59.038 57.895 4.99 0.00 40.81 4.83
2974 4783 3.785859 GGCCTGATCCACTCGGCA 61.786 66.667 0.00 0.00 42.04 5.69
3373 5472 7.475840 GTTTGATCTGGGTTTCTGACATATTC 58.524 38.462 0.00 0.00 0.00 1.75
3398 5497 8.983789 TCTGGGTTGGAATTATTTATTTTACCC 58.016 33.333 0.00 0.00 39.45 3.69
3414 5513 2.047655 CCAAAGGTGGCGAGCGTA 60.048 61.111 0.00 0.00 38.35 4.42
3534 5633 2.990479 GCCGACACCTCCATCCTT 59.010 61.111 0.00 0.00 0.00 3.36
3659 5774 1.098050 GAATCTTGACGCATGGGCTT 58.902 50.000 10.10 0.00 38.10 4.35
3914 6064 0.984230 TGGAGAAGACGGCCAAGAAT 59.016 50.000 2.24 0.00 0.00 2.40
3929 6079 1.497161 AGAATTGGTACGAGGAGGGG 58.503 55.000 0.00 0.00 0.00 4.79
4015 6182 1.221466 CTTCTTCTTCCACGTGCGCA 61.221 55.000 5.66 5.66 0.00 6.09
4321 6605 6.750501 GTGGTCGCTAAAAGAAAAGAAAAAGT 59.249 34.615 0.00 0.00 0.00 2.66
4322 6606 6.970613 TGGTCGCTAAAAGAAAAGAAAAAGTC 59.029 34.615 0.00 0.00 0.00 3.01
4331 6615 7.703058 AAGAAAAGAAAAAGTCTCCAAGTCA 57.297 32.000 0.00 0.00 34.56 3.41
4393 6678 4.563184 GTCAGATCGCTAGTGGTAGTTTTG 59.437 45.833 2.90 0.00 0.00 2.44
4450 6847 7.607607 AGACAGATGTGTGATGTTTATAAAGCA 59.392 33.333 0.00 0.97 36.88 3.91
4484 6881 5.235186 CCTTTCTCGATAAAAGATGTGCGAT 59.765 40.000 17.50 0.00 36.09 4.58
4488 6885 6.677913 TCTCGATAAAAGATGTGCGATGATA 58.322 36.000 0.00 0.00 0.00 2.15
4497 6894 8.831715 AAAGATGTGCGATGATATTGTATACA 57.168 30.769 0.08 0.08 0.00 2.29
4498 6895 7.818493 AGATGTGCGATGATATTGTATACAC 57.182 36.000 4.68 0.00 0.00 2.90
4533 6930 0.457337 GGAAGTGTGTACGTAGCCCG 60.457 60.000 0.00 0.00 44.03 6.13
4552 6949 2.483876 CGGTTCCGATTATCAGTGCAT 58.516 47.619 5.19 0.00 0.00 3.96
4625 7022 8.570096 TCATAGTGTTGTTTACGAGTATATGC 57.430 34.615 0.00 0.00 0.00 3.14
4657 7058 9.909644 AGTTAATATTCCATCACTATGTACGAC 57.090 33.333 0.00 0.00 0.00 4.34
4658 7059 9.909644 GTTAATATTCCATCACTATGTACGACT 57.090 33.333 0.00 0.00 0.00 4.18
4659 7060 9.908152 TTAATATTCCATCACTATGTACGACTG 57.092 33.333 0.00 0.00 0.00 3.51
4660 7061 7.761038 ATATTCCATCACTATGTACGACTGA 57.239 36.000 0.00 0.00 0.00 3.41
4661 7062 5.500645 TTCCATCACTATGTACGACTGAG 57.499 43.478 0.00 0.00 0.00 3.35
4662 7063 3.883489 TCCATCACTATGTACGACTGAGG 59.117 47.826 0.00 0.00 0.00 3.86
4663 7064 3.004839 CCATCACTATGTACGACTGAGGG 59.995 52.174 0.00 0.70 0.00 4.30
4664 7065 2.022195 TCACTATGTACGACTGAGGGC 58.978 52.381 0.00 0.00 0.00 5.19
4665 7066 1.067212 CACTATGTACGACTGAGGGCC 59.933 57.143 0.00 0.00 0.00 5.80
4666 7067 1.063867 ACTATGTACGACTGAGGGCCT 60.064 52.381 5.25 5.25 0.00 5.19
4667 7068 2.174210 ACTATGTACGACTGAGGGCCTA 59.826 50.000 5.73 0.00 0.00 3.93
4668 7069 2.154567 ATGTACGACTGAGGGCCTAA 57.845 50.000 5.73 0.00 0.00 2.69
4669 7070 1.471119 TGTACGACTGAGGGCCTAAG 58.529 55.000 17.02 17.02 0.00 2.18
4670 7071 1.272313 TGTACGACTGAGGGCCTAAGT 60.272 52.381 24.27 24.27 0.00 2.24
4671 7072 1.134560 GTACGACTGAGGGCCTAAGTG 59.865 57.143 28.87 20.70 0.00 3.16
4672 7073 1.258445 ACGACTGAGGGCCTAAGTGG 61.258 60.000 28.87 27.67 39.35 4.00
5088 7493 1.674962 GTCGGCGTAGATCTGGTAAGT 59.325 52.381 6.85 0.00 0.00 2.24
5092 7497 3.675228 CGGCGTAGATCTGGTAAGTTTGT 60.675 47.826 5.18 0.00 0.00 2.83
5249 7654 3.498841 CGTGTACCCTAGATCCAGATCCT 60.499 52.174 4.01 0.00 38.58 3.24
5356 7763 3.157949 CCCCTCCCTCTCTTCGGC 61.158 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.708451 ACTAGAAAAATGCCCCGGAATT 58.292 40.909 0.73 0.00 0.00 2.17
5 6 2.572556 TGTACTAGAAAAATGCCCCGGA 59.427 45.455 0.73 0.00 0.00 5.14
6 7 2.993937 TGTACTAGAAAAATGCCCCGG 58.006 47.619 0.00 0.00 0.00 5.73
8 9 4.521256 TGTGTTGTACTAGAAAAATGCCCC 59.479 41.667 0.00 0.00 0.00 5.80
10 11 6.554334 TCTGTGTTGTACTAGAAAAATGCC 57.446 37.500 0.00 0.00 0.00 4.40
16 17 8.100791 AGCCAAATATCTGTGTTGTACTAGAAA 58.899 33.333 0.00 0.00 0.00 2.52
18 19 7.182817 AGCCAAATATCTGTGTTGTACTAGA 57.817 36.000 0.00 0.00 0.00 2.43
19 20 9.197694 GATAGCCAAATATCTGTGTTGTACTAG 57.802 37.037 0.00 0.00 30.80 2.57
20 21 8.700973 TGATAGCCAAATATCTGTGTTGTACTA 58.299 33.333 0.00 0.00 33.98 1.82
21 22 7.564793 TGATAGCCAAATATCTGTGTTGTACT 58.435 34.615 0.00 0.00 33.98 2.73
23 24 7.495606 CACTGATAGCCAAATATCTGTGTTGTA 59.504 37.037 18.20 0.00 46.43 2.41
24 25 6.317140 CACTGATAGCCAAATATCTGTGTTGT 59.683 38.462 18.20 0.00 46.43 3.32
41 42 3.551046 CGCTAGTAACTGGCCACTGATAG 60.551 52.174 0.00 1.98 34.43 2.08
52 53 1.589196 GGGCGCTCGCTAGTAACTG 60.589 63.158 7.64 0.00 41.60 3.16
68 72 2.125753 GCAGAGTGACGAGCAGGG 60.126 66.667 0.00 0.00 0.00 4.45
97 101 7.696992 ATTAACTAATCCAATTGACCGTTGT 57.303 32.000 7.12 0.00 0.00 3.32
120 130 6.151144 GTGACAGTGGCCTAATTGTTCTTTAT 59.849 38.462 3.32 0.00 0.00 1.40
177 456 4.127566 ACGCCTAAACCACATACGTAAT 57.872 40.909 0.00 0.00 0.00 1.89
179 458 3.591196 AACGCCTAAACCACATACGTA 57.409 42.857 0.00 0.00 0.00 3.57
182 461 5.409214 TCAGTTAAACGCCTAAACCACATAC 59.591 40.000 0.00 0.00 0.00 2.39
195 481 2.381589 GTTTGGTGCTCAGTTAAACGC 58.618 47.619 0.00 0.00 0.00 4.84
196 482 2.635444 CGTTTGGTGCTCAGTTAAACG 58.365 47.619 0.00 0.00 44.62 3.60
197 483 3.848554 GCTCGTTTGGTGCTCAGTTAAAC 60.849 47.826 0.00 0.00 32.48 2.01
198 484 2.289547 GCTCGTTTGGTGCTCAGTTAAA 59.710 45.455 0.00 0.00 32.48 1.52
199 485 1.871039 GCTCGTTTGGTGCTCAGTTAA 59.129 47.619 0.00 0.00 32.48 2.01
200 486 1.202592 TGCTCGTTTGGTGCTCAGTTA 60.203 47.619 0.00 0.00 36.15 2.24
201 487 0.463654 TGCTCGTTTGGTGCTCAGTT 60.464 50.000 0.00 0.00 36.15 3.16
202 488 0.463654 TTGCTCGTTTGGTGCTCAGT 60.464 50.000 0.00 0.00 36.15 3.41
241 528 0.037326 GTCATGTTCTGGCCGAGTCA 60.037 55.000 0.00 3.03 0.00 3.41
418 712 2.175184 CTGGGTCGTTCGCTTGCTTG 62.175 60.000 0.00 0.00 0.00 4.01
420 714 2.357517 CTGGGTCGTTCGCTTGCT 60.358 61.111 0.00 0.00 0.00 3.91
432 726 0.252197 GGTTAACCTCATCGCTGGGT 59.748 55.000 17.83 0.00 34.47 4.51
503 797 0.539986 GGGGGATACGACTTTCTGCA 59.460 55.000 0.00 0.00 37.60 4.41
580 874 2.667318 CGTTTGCAGTCGCGGTCAT 61.667 57.895 6.13 0.00 42.97 3.06
712 1479 0.970427 GAAACCAATGGATGCCGGGT 60.970 55.000 6.16 0.00 0.00 5.28
777 1548 1.953138 CTGATGATCTGCGGACGCC 60.953 63.158 14.61 0.00 41.09 5.68
778 1549 0.319383 ATCTGATGATCTGCGGACGC 60.319 55.000 10.13 10.13 42.35 5.19
811 1588 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
815 1592 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
817 1594 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
818 1595 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
819 1596 0.036164 AGGTGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
820 1597 0.447406 CAGGTGTGTGTGTGTGTGTG 59.553 55.000 0.00 0.00 0.00 3.82
821 1598 0.676466 CCAGGTGTGTGTGTGTGTGT 60.676 55.000 0.00 0.00 0.00 3.72
824 1601 2.480610 GCCCAGGTGTGTGTGTGTG 61.481 63.158 0.00 0.00 0.00 3.82
825 1602 2.124320 GCCCAGGTGTGTGTGTGT 60.124 61.111 0.00 0.00 0.00 3.72
827 1604 4.562425 CGGCCCAGGTGTGTGTGT 62.562 66.667 0.00 0.00 0.00 3.72
891 1668 2.744494 GCTGCTAGGATTTGGTCTGGAG 60.744 54.545 0.00 0.00 0.00 3.86
905 1682 3.886340 CAGGTGTGCTGCTGCTAG 58.114 61.111 17.00 0.00 40.48 3.42
939 1718 2.426023 GGCACCCAAGTCGAGTGT 59.574 61.111 0.00 0.00 33.96 3.55
944 1723 3.357079 GCTGTGGCACCCAAGTCG 61.357 66.667 16.26 0.00 34.18 4.18
1306 2099 7.344913 AGATAGATTTCTGGAAGCAATTCACT 58.655 34.615 0.00 0.00 27.31 3.41
1320 2113 6.933521 ACGAAAGCATGCATAGATAGATTTCT 59.066 34.615 21.98 5.24 0.00 2.52
1321 2114 7.126726 ACGAAAGCATGCATAGATAGATTTC 57.873 36.000 21.98 15.42 0.00 2.17
1322 2115 7.502120 AACGAAAGCATGCATAGATAGATTT 57.498 32.000 21.98 7.98 0.00 2.17
1323 2116 7.502120 AAACGAAAGCATGCATAGATAGATT 57.498 32.000 21.98 0.00 0.00 2.40
1377 2205 6.969473 GGAATCAGGAATCTTTTTCGATCAAC 59.031 38.462 0.00 0.00 0.00 3.18
1378 2206 6.886459 AGGAATCAGGAATCTTTTTCGATCAA 59.114 34.615 0.00 0.00 0.00 2.57
1379 2207 6.317140 CAGGAATCAGGAATCTTTTTCGATCA 59.683 38.462 0.00 0.00 0.00 2.92
1380 2208 6.540189 TCAGGAATCAGGAATCTTTTTCGATC 59.460 38.462 0.00 0.00 0.00 3.69
1381 2209 6.418101 TCAGGAATCAGGAATCTTTTTCGAT 58.582 36.000 0.00 0.00 0.00 3.59
1383 2211 6.150140 AGTTCAGGAATCAGGAATCTTTTTCG 59.850 38.462 0.00 0.00 0.00 3.46
1384 2212 7.175641 TCAGTTCAGGAATCAGGAATCTTTTTC 59.824 37.037 0.00 0.00 0.00 2.29
1385 2213 7.006509 TCAGTTCAGGAATCAGGAATCTTTTT 58.993 34.615 0.00 0.00 0.00 1.94
1386 2214 6.432472 GTCAGTTCAGGAATCAGGAATCTTTT 59.568 38.462 0.00 0.00 0.00 2.27
1387 2215 5.942826 GTCAGTTCAGGAATCAGGAATCTTT 59.057 40.000 0.00 0.00 0.00 2.52
1388 2216 5.495640 GTCAGTTCAGGAATCAGGAATCTT 58.504 41.667 0.00 0.00 0.00 2.40
1389 2217 4.382470 CGTCAGTTCAGGAATCAGGAATCT 60.382 45.833 0.00 0.00 0.00 2.40
1390 2218 3.868077 CGTCAGTTCAGGAATCAGGAATC 59.132 47.826 0.00 0.00 0.00 2.52
1391 2219 3.261897 ACGTCAGTTCAGGAATCAGGAAT 59.738 43.478 0.00 0.00 0.00 3.01
1392 2220 2.632996 ACGTCAGTTCAGGAATCAGGAA 59.367 45.455 0.00 0.00 0.00 3.36
1393 2221 2.248248 ACGTCAGTTCAGGAATCAGGA 58.752 47.619 0.00 0.00 0.00 3.86
1394 2222 2.751166 ACGTCAGTTCAGGAATCAGG 57.249 50.000 0.00 0.00 0.00 3.86
1395 2223 4.442375 AGTACGTCAGTTCAGGAATCAG 57.558 45.455 0.00 0.00 0.00 2.90
1396 2224 5.336213 GGTTAGTACGTCAGTTCAGGAATCA 60.336 44.000 0.00 0.00 0.00 2.57
1397 2225 5.100943 GGTTAGTACGTCAGTTCAGGAATC 58.899 45.833 0.00 0.00 0.00 2.52
1398 2226 4.771054 AGGTTAGTACGTCAGTTCAGGAAT 59.229 41.667 0.00 0.00 0.00 3.01
1399 2227 4.147321 AGGTTAGTACGTCAGTTCAGGAA 58.853 43.478 0.00 0.00 0.00 3.36
1400 2228 3.755378 GAGGTTAGTACGTCAGTTCAGGA 59.245 47.826 0.00 0.00 38.66 3.86
1401 2229 3.504906 TGAGGTTAGTACGTCAGTTCAGG 59.495 47.826 0.00 0.00 42.47 3.86
1402 2230 4.761235 TGAGGTTAGTACGTCAGTTCAG 57.239 45.455 0.00 0.00 42.47 3.02
1455 2286 0.250166 AAACGCACGGCTAACCTTCT 60.250 50.000 0.00 0.00 0.00 2.85
1721 2628 6.037062 GCTTTGCTTTTATTCACCTTTTGTGT 59.963 34.615 0.00 0.00 45.61 3.72
1736 2643 9.790344 AGAGAGTATCATATATGCTTTGCTTTT 57.210 29.630 7.92 0.00 37.82 2.27
1792 2701 5.233476 TCTTTGTTAACTGCTTGTACGAGTG 59.767 40.000 11.83 7.66 0.00 3.51
1806 2715 5.179533 TGGCCCAAACTTTTCTTTGTTAAC 58.820 37.500 0.00 0.00 30.33 2.01
1875 2794 3.896272 CCCTCCTCGTTAGGCTAGTTATT 59.104 47.826 0.00 0.00 43.31 1.40
1879 2798 0.106116 CCCCTCCTCGTTAGGCTAGT 60.106 60.000 0.00 0.00 43.31 2.57
2023 2964 5.279056 GCTAGGCCTTCTGTTCGTTCTATAT 60.279 44.000 12.58 0.00 0.00 0.86
2166 3117 1.613437 TGACTTCATGAGACAGCGACA 59.387 47.619 0.00 0.00 0.00 4.35
2182 3133 5.191426 AGCAACAAAGCTATCATCATGACT 58.809 37.500 0.00 0.00 44.50 3.41
2183 3134 5.496133 AGCAACAAAGCTATCATCATGAC 57.504 39.130 0.00 0.00 44.50 3.06
2184 3135 5.066893 GGAAGCAACAAAGCTATCATCATGA 59.933 40.000 0.00 0.00 45.89 3.07
2185 3136 5.067413 AGGAAGCAACAAAGCTATCATCATG 59.933 40.000 0.00 0.00 45.89 3.07
2186 3137 5.067413 CAGGAAGCAACAAAGCTATCATCAT 59.933 40.000 0.00 0.00 45.89 2.45
2187 3138 4.397103 CAGGAAGCAACAAAGCTATCATCA 59.603 41.667 0.00 0.00 45.89 3.07
2188 3139 4.732938 GCAGGAAGCAACAAAGCTATCATC 60.733 45.833 0.00 0.00 45.89 2.92
2189 3140 3.129988 GCAGGAAGCAACAAAGCTATCAT 59.870 43.478 0.00 0.00 45.89 2.45
2330 3941 3.268603 CGAAGTGGCACGCACACA 61.269 61.111 12.71 0.00 44.14 3.72
2331 3942 2.964925 TCGAAGTGGCACGCACAC 60.965 61.111 12.71 2.58 44.14 3.82
2332 3943 2.964925 GTCGAAGTGGCACGCACA 60.965 61.111 12.71 0.00 44.14 4.57
2346 3957 2.751166 ATTCCTCCAAGTCACTGTCG 57.249 50.000 0.00 0.00 0.00 4.35
2394 4016 5.297278 AGCTTAGTCACGAGTCTAACCATAG 59.703 44.000 0.00 0.00 0.00 2.23
2397 4019 3.190744 CAGCTTAGTCACGAGTCTAACCA 59.809 47.826 0.00 0.00 0.00 3.67
2523 4245 5.991606 TCCTGCAACAGAGCACATATAATAC 59.008 40.000 0.00 0.00 40.11 1.89
2533 4288 1.676635 GCCATCCTGCAACAGAGCA 60.677 57.895 0.00 0.00 43.35 4.26
2569 4330 3.768833 GAGGTCCCATAGGCCCGGA 62.769 68.421 0.73 0.00 31.64 5.14
2915 4718 0.107410 AACTTGCTCACCGTGTCCAA 60.107 50.000 0.00 2.95 0.00 3.53
3331 5430 0.672342 AACGGCTATGGCTAGTACGG 59.328 55.000 0.00 0.00 38.73 4.02
3373 5472 8.763601 TGGGTAAAATAAATAATTCCAACCCAG 58.236 33.333 0.00 0.00 42.75 4.45
3398 5497 1.078759 CTCTACGCTCGCCACCTTTG 61.079 60.000 0.00 0.00 0.00 2.77
3534 5633 0.757561 TGTGGAGACGGAGGTTGTCA 60.758 55.000 0.00 0.00 38.83 3.58
3914 6064 2.686106 GCCCCCTCCTCGTACCAA 60.686 66.667 0.00 0.00 0.00 3.67
3974 6124 2.197283 ACTAACCGTCGTCTTCCTCT 57.803 50.000 0.00 0.00 0.00 3.69
4015 6182 4.065088 ACAGTCACAACAAATAGCGATGT 58.935 39.130 0.00 0.00 0.00 3.06
4321 6605 1.059098 ATGCACCACTGACTTGGAGA 58.941 50.000 0.00 0.00 39.24 3.71
4322 6606 2.350522 GTATGCACCACTGACTTGGAG 58.649 52.381 0.00 0.00 39.24 3.86
4331 6615 0.613260 ACATCCACGTATGCACCACT 59.387 50.000 0.00 0.00 0.00 4.00
4488 6885 7.544566 CCTGTAGTTTCACTTCGTGTATACAAT 59.455 37.037 7.25 0.00 34.79 2.71
4497 6894 3.387050 ACTTCCCTGTAGTTTCACTTCGT 59.613 43.478 0.00 0.00 0.00 3.85
4498 6895 3.741344 CACTTCCCTGTAGTTTCACTTCG 59.259 47.826 0.00 0.00 0.00 3.79
4533 6930 5.057149 ACTTATGCACTGATAATCGGAACC 58.943 41.667 0.00 0.00 0.00 3.62
4552 6949 8.105097 ACACATTACACATTGTGCATTACTTA 57.895 30.769 16.62 0.00 45.59 2.24
4590 6987 3.766545 ACAACACTATGAACCTGGCAAT 58.233 40.909 0.00 0.00 0.00 3.56
4635 7036 8.178313 TCAGTCGTACATAGTGATGGAATATT 57.822 34.615 0.00 0.00 37.39 1.28
4643 7044 2.623889 GCCCTCAGTCGTACATAGTGAT 59.376 50.000 3.82 0.00 0.00 3.06
4644 7045 2.022195 GCCCTCAGTCGTACATAGTGA 58.978 52.381 0.00 0.00 0.00 3.41
4645 7046 1.067212 GGCCCTCAGTCGTACATAGTG 59.933 57.143 0.00 0.00 0.00 2.74
4646 7047 1.063867 AGGCCCTCAGTCGTACATAGT 60.064 52.381 0.00 0.00 0.00 2.12
4647 7048 1.693627 AGGCCCTCAGTCGTACATAG 58.306 55.000 0.00 0.00 0.00 2.23
4648 7049 3.220110 CTTAGGCCCTCAGTCGTACATA 58.780 50.000 0.00 0.00 0.00 2.29
4649 7050 2.032620 CTTAGGCCCTCAGTCGTACAT 58.967 52.381 0.00 0.00 0.00 2.29
4650 7051 1.272313 ACTTAGGCCCTCAGTCGTACA 60.272 52.381 0.00 0.00 0.00 2.90
4651 7052 1.134560 CACTTAGGCCCTCAGTCGTAC 59.865 57.143 0.00 0.00 0.00 3.67
4652 7053 1.471119 CACTTAGGCCCTCAGTCGTA 58.529 55.000 0.00 0.00 0.00 3.43
4653 7054 1.258445 CCACTTAGGCCCTCAGTCGT 61.258 60.000 0.00 0.00 0.00 4.34
4654 7055 1.517832 CCACTTAGGCCCTCAGTCG 59.482 63.158 0.00 0.00 0.00 4.18
4664 7065 1.202698 GGAGCCATACTGCCACTTAGG 60.203 57.143 0.00 0.00 41.84 2.69
4665 7066 1.765314 AGGAGCCATACTGCCACTTAG 59.235 52.381 0.00 0.00 37.47 2.18
4666 7067 1.762957 GAGGAGCCATACTGCCACTTA 59.237 52.381 0.00 0.00 37.47 2.24
4667 7068 0.543749 GAGGAGCCATACTGCCACTT 59.456 55.000 0.00 0.00 37.47 3.16
4668 7069 1.341156 GGAGGAGCCATACTGCCACT 61.341 60.000 0.00 0.00 37.47 4.00
4669 7070 1.147153 GGAGGAGCCATACTGCCAC 59.853 63.158 0.00 0.00 37.47 5.01
4670 7071 0.621571 AAGGAGGAGCCATACTGCCA 60.622 55.000 0.00 0.00 37.47 4.92
4671 7072 0.107643 GAAGGAGGAGCCATACTGCC 59.892 60.000 0.00 0.00 37.47 4.85
4672 7073 0.107643 GGAAGGAGGAGCCATACTGC 59.892 60.000 0.00 0.00 40.02 4.40
4673 7074 1.799933 AGGAAGGAGGAGCCATACTG 58.200 55.000 0.00 0.00 40.02 2.74
4674 7075 2.577772 AAGGAAGGAGGAGCCATACT 57.422 50.000 0.00 0.00 40.02 2.12
4675 7076 2.774809 AGAAAGGAAGGAGGAGCCATAC 59.225 50.000 0.00 0.00 40.02 2.39
4676 7077 3.041946 GAGAAAGGAAGGAGGAGCCATA 58.958 50.000 0.00 0.00 40.02 2.74
4781 7185 1.889573 GGGAGCTACGCATGAAGGC 60.890 63.158 0.00 0.00 0.00 4.35
5088 7493 1.890041 CAGGGGACGCGAACACAAA 60.890 57.895 15.93 0.00 0.00 2.83
5249 7654 4.690719 CCGGCGGCCACTACACAA 62.691 66.667 20.71 0.00 0.00 3.33
5424 7831 2.679342 CCAAATGGGCCGGAGAGGA 61.679 63.158 5.05 0.00 45.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.