Multiple sequence alignment - TraesCS3B01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G307900 chr3B 100.000 3708 0 0 1 3708 494530011 494533718 0.000000e+00 6848.0
1 TraesCS3B01G307900 chr3B 92.131 305 22 1 325 629 47813198 47812896 2.650000e-116 429.0
2 TraesCS3B01G307900 chr3B 91.749 303 25 0 325 627 766049401 766049703 4.430000e-114 422.0
3 TraesCS3B01G307900 chr3B 86.250 160 21 1 3550 3708 519394061 519394220 4.920000e-39 172.0
4 TraesCS3B01G307900 chr3B 90.816 98 7 2 14 109 449736902 449736805 3.010000e-26 130.0
5 TraesCS3B01G307900 chr3A 91.799 2963 138 45 630 3560 503024957 503027846 0.000000e+00 4028.0
6 TraesCS3B01G307900 chr3A 90.064 312 26 5 14 323 503024663 503024971 2.070000e-107 399.0
7 TraesCS3B01G307900 chr3D 91.797 2816 148 42 629 3410 379227794 379230560 0.000000e+00 3843.0
8 TraesCS3B01G307900 chr3D 88.514 148 17 0 3561 3708 15461360 15461507 2.940000e-41 180.0
9 TraesCS3B01G307900 chr5A 92.593 297 22 0 334 630 148835872 148835576 9.520000e-116 427.0
10 TraesCS3B01G307900 chr5A 88.000 100 8 4 15 113 590451169 590451073 8.420000e-22 115.0
11 TraesCS3B01G307900 chr6A 91.776 304 25 0 324 627 584038442 584038745 1.230000e-114 424.0
12 TraesCS3B01G307900 chr6A 88.514 148 16 1 3561 3708 153578772 153578918 1.060000e-40 178.0
13 TraesCS3B01G307900 chr6A 91.566 83 6 1 22 103 328383268 328383350 3.030000e-21 113.0
14 TraesCS3B01G307900 chr1B 91.054 313 28 0 325 637 49024563 49024251 1.230000e-114 424.0
15 TraesCS3B01G307900 chr1B 90.252 318 29 2 324 640 340473303 340473619 7.410000e-112 414.0
16 TraesCS3B01G307900 chr5B 91.749 303 25 0 325 627 270632534 270632232 4.430000e-114 422.0
17 TraesCS3B01G307900 chr5B 87.209 172 21 1 3538 3708 56585465 56585294 1.050000e-45 195.0
18 TraesCS3B01G307900 chr4A 91.262 309 27 0 325 633 589615918 589616226 4.430000e-114 422.0
19 TraesCS3B01G307900 chr7A 90.735 313 27 2 325 636 8660168 8660479 2.060000e-112 416.0
20 TraesCS3B01G307900 chr7A 89.865 148 15 0 3561 3708 706458806 706458953 1.360000e-44 191.0
21 TraesCS3B01G307900 chr7A 87.838 148 18 0 3560 3707 717043065 717043212 1.370000e-39 174.0
22 TraesCS3B01G307900 chr7B 89.933 149 15 0 3560 3708 385061851 385061999 3.780000e-45 193.0
23 TraesCS3B01G307900 chr6B 89.404 151 16 0 3558 3708 176968195 176968345 1.360000e-44 191.0
24 TraesCS3B01G307900 chr2B 87.821 156 17 2 3553 3708 122751068 122751221 8.180000e-42 182.0
25 TraesCS3B01G307900 chr1A 90.722 97 7 2 14 109 555936137 555936232 1.080000e-25 128.0
26 TraesCS3B01G307900 chr2D 88.182 110 8 4 2 107 109795530 109795422 3.890000e-25 126.0
27 TraesCS3B01G307900 chr2D 87.879 99 10 2 12 109 37486623 37486720 8.420000e-22 115.0
28 TraesCS3B01G307900 chr2A 87.879 99 10 2 12 109 42339398 42339495 8.420000e-22 115.0
29 TraesCS3B01G307900 chr7D 84.112 107 10 7 14 116 615937878 615937775 3.050000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G307900 chr3B 494530011 494533718 3707 False 6848.0 6848 100.0000 1 3708 1 chr3B.!!$F1 3707
1 TraesCS3B01G307900 chr3A 503024663 503027846 3183 False 2213.5 4028 90.9315 14 3560 2 chr3A.!!$F1 3546
2 TraesCS3B01G307900 chr3D 379227794 379230560 2766 False 3843.0 3843 91.7970 629 3410 1 chr3D.!!$F2 2781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 405 0.041663 ATAAACGCACACACGCACAC 60.042 50.0 0.00 0.00 36.19 3.82 F
437 439 0.248843 CACCTCCAAGAGACTGAGCC 59.751 60.0 0.00 0.00 0.00 4.70 F
513 515 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.0 0.00 0.00 37.60 3.51 F
2059 2080 0.168348 ACGTGAAGTCGATCGACAGG 59.832 55.0 40.51 29.24 46.76 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1797 0.249398 GGGTCGTCCTTGTACTGCAT 59.751 55.000 0.00 0.0 0.00 3.96 R
2035 2056 0.448990 CGATCGACTTCACGTACCCA 59.551 55.000 10.26 0.0 34.70 4.51 R
2188 2209 1.511305 GGAGGCGAAGTCGATGTCA 59.489 57.895 4.59 0.0 43.02 3.58 R
3224 3281 0.027063 CGACGGTTGTTTGTGGTCAC 59.973 55.000 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.018515 TGGTTTTCGCTCGGTTTTTCT 58.981 42.857 0.00 0.00 0.00 2.52
47 48 3.002553 GTGGTTTTCGCTCGGTTTTTCTA 59.997 43.478 0.00 0.00 0.00 2.10
63 65 7.860872 CGGTTTTTCTAATTAACTGAGCAACTT 59.139 33.333 0.00 0.00 31.35 2.66
93 95 8.347771 TCTTCTTAATGAATGCATGATAACTGC 58.652 33.333 0.00 0.00 40.10 4.40
109 111 7.601856 TGATAACTGCCATTTCGAAGAAAAAT 58.398 30.769 0.00 0.00 45.90 1.82
111 113 9.567848 GATAACTGCCATTTCGAAGAAAAATAA 57.432 29.630 0.00 0.00 45.90 1.40
141 143 7.023575 AAAACTAAGTTTAGCAATCTCATGCG 58.976 34.615 0.00 0.00 41.90 4.73
153 155 1.808343 TCTCATGCGCCATCATATTGC 59.192 47.619 4.18 0.00 0.00 3.56
209 211 8.571461 TTTGAAGATGTTTAGAGATGCTCAAT 57.429 30.769 0.00 0.00 32.06 2.57
210 212 7.549615 TGAAGATGTTTAGAGATGCTCAATG 57.450 36.000 0.00 0.00 32.06 2.82
214 216 5.808042 TGTTTAGAGATGCTCAATGCTTC 57.192 39.130 0.00 0.00 43.61 3.86
243 245 2.854185 GCAATTTGCAGGATTTCTACGC 59.146 45.455 16.35 0.00 44.26 4.42
244 246 3.438360 CAATTTGCAGGATTTCTACGCC 58.562 45.455 0.00 0.00 0.00 5.68
251 253 1.003928 AGGATTTCTACGCCCGGTTTT 59.996 47.619 0.00 0.00 0.00 2.43
254 256 1.677942 TTTCTACGCCCGGTTTTGTT 58.322 45.000 0.00 0.00 0.00 2.83
257 259 1.903783 CTACGCCCGGTTTTGTTCGG 61.904 60.000 0.00 0.00 45.29 4.30
265 267 2.989641 CGGTTTTGTTCGGACGAAATT 58.010 42.857 12.46 0.00 40.36 1.82
272 274 2.739913 TGTTCGGACGAAATTGATGACC 59.260 45.455 8.88 0.00 35.75 4.02
273 275 2.739913 GTTCGGACGAAATTGATGACCA 59.260 45.455 8.88 0.00 35.75 4.02
296 298 4.191544 TCGATGGATGATCAAAAGTGTCC 58.808 43.478 0.00 1.12 0.00 4.02
299 301 3.073678 TGGATGATCAAAAGTGTCCGTG 58.926 45.455 0.00 0.00 0.00 4.94
301 303 1.234821 TGATCAAAAGTGTCCGTGCC 58.765 50.000 0.00 0.00 0.00 5.01
314 316 2.604174 CGTGCCGTCTGGTCCAAAC 61.604 63.158 0.00 0.00 37.67 2.93
315 317 1.525077 GTGCCGTCTGGTCCAAACA 60.525 57.895 0.00 0.00 37.67 2.83
316 318 0.889186 GTGCCGTCTGGTCCAAACAT 60.889 55.000 0.00 0.00 37.67 2.71
317 319 0.179004 TGCCGTCTGGTCCAAACATT 60.179 50.000 0.00 0.00 37.67 2.71
318 320 0.958822 GCCGTCTGGTCCAAACATTT 59.041 50.000 0.00 0.00 37.67 2.32
319 321 1.335872 GCCGTCTGGTCCAAACATTTG 60.336 52.381 0.00 0.00 37.67 2.32
320 322 4.533296 GCCGTCTGGTCCAAACATTTGG 62.533 54.545 15.98 15.98 46.58 3.28
348 350 4.350368 TTTTCCAGCATCAGTACAGACA 57.650 40.909 0.00 0.00 0.00 3.41
349 351 3.319137 TTCCAGCATCAGTACAGACAC 57.681 47.619 0.00 0.00 0.00 3.67
350 352 2.247358 TCCAGCATCAGTACAGACACA 58.753 47.619 0.00 0.00 0.00 3.72
351 353 2.632512 TCCAGCATCAGTACAGACACAA 59.367 45.455 0.00 0.00 0.00 3.33
352 354 2.998670 CCAGCATCAGTACAGACACAAG 59.001 50.000 0.00 0.00 0.00 3.16
353 355 2.414481 CAGCATCAGTACAGACACAAGC 59.586 50.000 0.00 0.00 0.00 4.01
354 356 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
355 357 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
356 358 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
357 359 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
358 360 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
359 361 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
360 362 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
361 363 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
362 364 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
363 365 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
364 366 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
365 367 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
366 368 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
370 372 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
371 373 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
372 374 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
373 375 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
374 376 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
375 377 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
376 378 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
377 379 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
378 380 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
379 381 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
380 382 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
381 383 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
382 384 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
383 385 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
384 386 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
385 387 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
386 388 2.163613 CGCGCATACACTCATCCCTATA 59.836 50.000 8.75 0.00 0.00 1.31
387 389 3.366985 CGCGCATACACTCATCCCTATAA 60.367 47.826 8.75 0.00 0.00 0.98
388 390 4.566004 GCGCATACACTCATCCCTATAAA 58.434 43.478 0.30 0.00 0.00 1.40
389 391 4.389077 GCGCATACACTCATCCCTATAAAC 59.611 45.833 0.30 0.00 0.00 2.01
390 392 4.621460 CGCATACACTCATCCCTATAAACG 59.379 45.833 0.00 0.00 0.00 3.60
391 393 4.389077 GCATACACTCATCCCTATAAACGC 59.611 45.833 0.00 0.00 0.00 4.84
392 394 5.538118 CATACACTCATCCCTATAAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
393 395 3.793559 ACACTCATCCCTATAAACGCAC 58.206 45.455 0.00 0.00 0.00 5.34
394 396 3.196901 ACACTCATCCCTATAAACGCACA 59.803 43.478 0.00 0.00 0.00 4.57
395 397 3.555956 CACTCATCCCTATAAACGCACAC 59.444 47.826 0.00 0.00 0.00 3.82
396 398 3.196901 ACTCATCCCTATAAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
397 399 3.527533 TCATCCCTATAAACGCACACAC 58.472 45.455 0.00 0.00 0.00 3.82
398 400 1.999048 TCCCTATAAACGCACACACG 58.001 50.000 0.00 0.00 39.50 4.49
399 401 0.372334 CCCTATAAACGCACACACGC 59.628 55.000 0.00 0.00 36.19 5.34
400 402 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
401 403 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
402 404 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
403 405 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
404 406 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
407 409 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
408 410 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
409 411 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
410 412 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
411 413 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
412 414 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
413 415 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
414 416 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
415 417 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
416 418 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
417 419 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
418 420 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
419 421 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
420 422 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
421 423 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
422 424 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
423 425 2.183679 CCCTATCCCTATGAGCACCTC 58.816 57.143 0.00 0.00 0.00 3.85
424 426 2.183679 CCTATCCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
425 427 2.493500 CCTATCCCTATGAGCACCTCCA 60.494 54.545 0.00 0.00 0.00 3.86
426 428 2.196742 ATCCCTATGAGCACCTCCAA 57.803 50.000 0.00 0.00 0.00 3.53
427 429 1.500474 TCCCTATGAGCACCTCCAAG 58.500 55.000 0.00 0.00 0.00 3.61
428 430 1.008327 TCCCTATGAGCACCTCCAAGA 59.992 52.381 0.00 0.00 0.00 3.02
429 431 1.415659 CCCTATGAGCACCTCCAAGAG 59.584 57.143 0.00 0.00 0.00 2.85
430 432 2.392662 CCTATGAGCACCTCCAAGAGA 58.607 52.381 0.00 0.00 0.00 3.10
431 433 2.102252 CCTATGAGCACCTCCAAGAGAC 59.898 54.545 0.00 0.00 0.00 3.36
432 434 1.949799 ATGAGCACCTCCAAGAGACT 58.050 50.000 0.00 0.00 0.00 3.24
433 435 0.972134 TGAGCACCTCCAAGAGACTG 59.028 55.000 0.00 0.00 0.00 3.51
434 436 1.261480 GAGCACCTCCAAGAGACTGA 58.739 55.000 0.00 0.00 0.00 3.41
435 437 1.204467 GAGCACCTCCAAGAGACTGAG 59.796 57.143 0.00 0.00 0.00 3.35
436 438 0.390998 GCACCTCCAAGAGACTGAGC 60.391 60.000 0.00 0.00 0.00 4.26
437 439 0.248843 CACCTCCAAGAGACTGAGCC 59.751 60.000 0.00 0.00 0.00 4.70
438 440 1.254284 ACCTCCAAGAGACTGAGCCG 61.254 60.000 0.00 0.00 0.00 5.52
439 441 1.515020 CTCCAAGAGACTGAGCCGG 59.485 63.158 0.00 0.00 0.00 6.13
440 442 2.125350 CCAAGAGACTGAGCCGGC 60.125 66.667 21.89 21.89 0.00 6.13
441 443 2.659016 CAAGAGACTGAGCCGGCA 59.341 61.111 31.54 7.98 0.00 5.69
442 444 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
443 445 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
444 446 1.069823 CAAGAGACTGAGCCGGCATAT 59.930 52.381 31.54 8.11 0.00 1.78
445 447 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
446 448 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
447 449 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
448 450 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
449 451 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
450 452 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
451 453 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
452 454 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
453 455 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
454 456 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
455 457 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
456 458 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
457 459 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
458 460 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
459 461 5.587844 GCCGGCATATCATCTTGAGATTTAT 59.412 40.000 24.80 0.00 31.21 1.40
460 462 6.457934 GCCGGCATATCATCTTGAGATTTATG 60.458 42.308 24.80 12.28 34.43 1.90
461 463 6.820152 CCGGCATATCATCTTGAGATTTATGA 59.180 38.462 17.06 5.24 33.82 2.15
462 464 7.335171 CCGGCATATCATCTTGAGATTTATGAA 59.665 37.037 17.06 0.00 33.82 2.57
463 465 8.388853 CGGCATATCATCTTGAGATTTATGAAG 58.611 37.037 17.06 10.18 33.82 3.02
464 466 8.182881 GGCATATCATCTTGAGATTTATGAAGC 58.817 37.037 17.06 8.94 33.82 3.86
465 467 8.182881 GCATATCATCTTGAGATTTATGAAGCC 58.817 37.037 17.06 4.27 33.82 4.35
466 468 9.227777 CATATCATCTTGAGATTTATGAAGCCA 57.772 33.333 11.67 0.00 33.82 4.75
467 469 6.932356 TCATCTTGAGATTTATGAAGCCAC 57.068 37.500 0.00 0.00 31.21 5.01
468 470 5.824624 TCATCTTGAGATTTATGAAGCCACC 59.175 40.000 0.00 0.00 31.21 4.61
469 471 5.178096 TCTTGAGATTTATGAAGCCACCA 57.822 39.130 0.00 0.00 0.00 4.17
470 472 5.759059 TCTTGAGATTTATGAAGCCACCAT 58.241 37.500 0.00 0.00 0.00 3.55
471 473 6.899089 TCTTGAGATTTATGAAGCCACCATA 58.101 36.000 0.00 0.00 0.00 2.74
472 474 6.994496 TCTTGAGATTTATGAAGCCACCATAG 59.006 38.462 0.00 0.00 0.00 2.23
473 475 5.624159 TGAGATTTATGAAGCCACCATAGG 58.376 41.667 0.00 0.00 0.00 2.57
474 476 5.132648 TGAGATTTATGAAGCCACCATAGGT 59.867 40.000 0.00 0.00 35.62 3.08
483 485 3.207354 ACCATAGGTGCCTCGTCG 58.793 61.111 0.00 0.00 32.98 5.12
484 486 1.681327 ACCATAGGTGCCTCGTCGT 60.681 57.895 0.00 0.00 32.98 4.34
485 487 1.065928 CCATAGGTGCCTCGTCGTC 59.934 63.158 0.00 0.00 0.00 4.20
486 488 1.298413 CATAGGTGCCTCGTCGTCG 60.298 63.158 0.00 0.00 38.55 5.12
487 489 1.450848 ATAGGTGCCTCGTCGTCGA 60.451 57.895 4.42 4.42 44.12 4.20
488 490 1.712977 ATAGGTGCCTCGTCGTCGAC 61.713 60.000 15.51 15.51 41.35 4.20
507 509 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
508 510 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
509 511 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
510 512 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
511 513 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
512 514 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
513 515 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
514 516 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
515 517 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
516 518 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
517 519 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
518 520 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
519 521 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
557 559 5.581126 AAAATCCAGAAATAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
558 560 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
559 561 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
560 562 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
561 563 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
562 564 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
563 565 2.017049 GAAATAATGCGAGCACCAGGT 58.983 47.619 0.00 0.00 0.00 4.00
564 566 2.128771 AATAATGCGAGCACCAGGTT 57.871 45.000 0.00 0.00 0.00 3.50
565 567 2.128771 ATAATGCGAGCACCAGGTTT 57.871 45.000 0.00 0.00 0.00 3.27
566 568 1.904287 TAATGCGAGCACCAGGTTTT 58.096 45.000 0.00 0.00 0.00 2.43
567 569 1.904287 AATGCGAGCACCAGGTTTTA 58.096 45.000 0.00 0.00 0.00 1.52
568 570 1.904287 ATGCGAGCACCAGGTTTTAA 58.096 45.000 0.00 0.00 0.00 1.52
569 571 1.681538 TGCGAGCACCAGGTTTTAAA 58.318 45.000 0.00 0.00 0.00 1.52
570 572 1.335496 TGCGAGCACCAGGTTTTAAAC 59.665 47.619 0.00 0.00 0.00 2.01
580 582 1.712056 GGTTTTAAACCCTGGTGGCT 58.288 50.000 15.49 0.00 46.12 4.75
581 583 2.043992 GGTTTTAAACCCTGGTGGCTT 58.956 47.619 15.49 0.00 46.12 4.35
582 584 2.224185 GGTTTTAAACCCTGGTGGCTTG 60.224 50.000 15.49 0.00 46.12 4.01
583 585 2.696187 GTTTTAAACCCTGGTGGCTTGA 59.304 45.455 0.00 0.00 37.83 3.02
584 586 2.757894 TTAAACCCTGGTGGCTTGAA 57.242 45.000 0.00 0.00 37.83 2.69
585 587 2.757894 TAAACCCTGGTGGCTTGAAA 57.242 45.000 0.00 0.00 37.83 2.69
586 588 1.872773 AAACCCTGGTGGCTTGAAAA 58.127 45.000 0.00 0.00 37.83 2.29
587 589 2.101640 AACCCTGGTGGCTTGAAAAT 57.898 45.000 0.00 0.00 37.83 1.82
588 590 2.990740 ACCCTGGTGGCTTGAAAATA 57.009 45.000 0.00 0.00 37.83 1.40
589 591 2.525368 ACCCTGGTGGCTTGAAAATAC 58.475 47.619 0.00 0.00 37.83 1.89
590 592 1.824852 CCCTGGTGGCTTGAAAATACC 59.175 52.381 0.00 0.00 0.00 2.73
591 593 2.524306 CCTGGTGGCTTGAAAATACCA 58.476 47.619 0.00 0.00 38.98 3.25
592 594 2.231235 CCTGGTGGCTTGAAAATACCAC 59.769 50.000 2.39 2.39 46.52 4.16
593 595 3.157087 CTGGTGGCTTGAAAATACCACT 58.843 45.455 10.55 0.00 46.48 4.00
594 596 2.890311 TGGTGGCTTGAAAATACCACTG 59.110 45.455 10.55 0.00 46.48 3.66
595 597 2.890945 GGTGGCTTGAAAATACCACTGT 59.109 45.455 10.55 0.00 46.48 3.55
596 598 3.057526 GGTGGCTTGAAAATACCACTGTC 60.058 47.826 10.55 0.00 46.48 3.51
597 599 3.821033 GTGGCTTGAAAATACCACTGTCT 59.179 43.478 3.81 0.00 44.86 3.41
598 600 5.001232 GTGGCTTGAAAATACCACTGTCTA 58.999 41.667 3.81 0.00 44.86 2.59
599 601 5.001232 TGGCTTGAAAATACCACTGTCTAC 58.999 41.667 0.00 0.00 28.12 2.59
600 602 4.395231 GGCTTGAAAATACCACTGTCTACC 59.605 45.833 0.00 0.00 0.00 3.18
601 603 5.246307 GCTTGAAAATACCACTGTCTACCT 58.754 41.667 0.00 0.00 0.00 3.08
602 604 6.403878 GCTTGAAAATACCACTGTCTACCTA 58.596 40.000 0.00 0.00 0.00 3.08
603 605 6.877322 GCTTGAAAATACCACTGTCTACCTAA 59.123 38.462 0.00 0.00 0.00 2.69
604 606 7.148457 GCTTGAAAATACCACTGTCTACCTAAC 60.148 40.741 0.00 0.00 0.00 2.34
605 607 6.704310 TGAAAATACCACTGTCTACCTAACC 58.296 40.000 0.00 0.00 0.00 2.85
606 608 6.270463 TGAAAATACCACTGTCTACCTAACCA 59.730 38.462 0.00 0.00 0.00 3.67
607 609 6.886178 AAATACCACTGTCTACCTAACCAT 57.114 37.500 0.00 0.00 0.00 3.55
608 610 6.481434 AATACCACTGTCTACCTAACCATC 57.519 41.667 0.00 0.00 0.00 3.51
609 611 4.062490 ACCACTGTCTACCTAACCATCT 57.938 45.455 0.00 0.00 0.00 2.90
610 612 4.426704 ACCACTGTCTACCTAACCATCTT 58.573 43.478 0.00 0.00 0.00 2.40
611 613 5.586877 ACCACTGTCTACCTAACCATCTTA 58.413 41.667 0.00 0.00 0.00 2.10
612 614 6.021030 ACCACTGTCTACCTAACCATCTTAA 58.979 40.000 0.00 0.00 0.00 1.85
613 615 6.070938 ACCACTGTCTACCTAACCATCTTAAC 60.071 42.308 0.00 0.00 0.00 2.01
614 616 6.338937 CACTGTCTACCTAACCATCTTAACC 58.661 44.000 0.00 0.00 0.00 2.85
615 617 6.021030 ACTGTCTACCTAACCATCTTAACCA 58.979 40.000 0.00 0.00 0.00 3.67
616 618 6.672657 ACTGTCTACCTAACCATCTTAACCAT 59.327 38.462 0.00 0.00 0.00 3.55
617 619 7.842743 ACTGTCTACCTAACCATCTTAACCATA 59.157 37.037 0.00 0.00 0.00 2.74
618 620 8.246430 TGTCTACCTAACCATCTTAACCATAG 57.754 38.462 0.00 0.00 0.00 2.23
619 621 7.289317 TGTCTACCTAACCATCTTAACCATAGG 59.711 40.741 0.00 0.00 35.62 2.57
620 622 7.289549 GTCTACCTAACCATCTTAACCATAGGT 59.710 40.741 6.78 6.78 42.99 3.08
622 624 6.659824 ACCTAACCATCTTAACCATAGGTTG 58.340 40.000 11.51 0.00 46.35 3.77
653 655 2.836667 ACATTTGGGGCTGATTGGATT 58.163 42.857 0.00 0.00 0.00 3.01
654 656 3.183801 ACATTTGGGGCTGATTGGATTT 58.816 40.909 0.00 0.00 0.00 2.17
656 658 4.043184 ACATTTGGGGCTGATTGGATTTTT 59.957 37.500 0.00 0.00 0.00 1.94
657 659 5.250313 ACATTTGGGGCTGATTGGATTTTTA 59.750 36.000 0.00 0.00 0.00 1.52
659 661 2.765699 TGGGGCTGATTGGATTTTTAGC 59.234 45.455 0.00 0.00 0.00 3.09
707 709 4.338879 CAAGTTGGACAGGAGGAAATCAT 58.661 43.478 0.00 0.00 0.00 2.45
744 746 8.871125 TCTATAAAGGTCCTATAAGCAAAGGAG 58.129 37.037 0.00 0.00 42.55 3.69
747 749 6.886178 AAGGTCCTATAAGCAAAGGAGTAA 57.114 37.500 0.00 0.00 42.55 2.24
760 762 4.810191 AAGGAGTAACACTAGCCTTCAG 57.190 45.455 0.00 0.00 29.39 3.02
832 834 2.341257 CAGTATCACAGTGTGCAGGTC 58.659 52.381 18.80 6.96 32.98 3.85
934 936 3.493303 GGCTCCATCCCCCACTCC 61.493 72.222 0.00 0.00 0.00 3.85
970 972 1.948508 CAGTAGCACCGCAAAAGCA 59.051 52.632 0.00 0.00 0.00 3.91
1362 1367 1.738099 CTACAACGCGCTCCAGCTT 60.738 57.895 5.73 0.00 39.32 3.74
1406 1411 3.121030 CTTCAAGGCGCTGGACCG 61.121 66.667 7.64 0.00 0.00 4.79
1545 1550 2.915659 ACCGCCTCCAACGACTCA 60.916 61.111 0.00 0.00 0.00 3.41
1599 1604 8.707449 TACTTCAAAGTCTACCTCAAGGTAAAA 58.293 33.333 10.06 0.00 43.54 1.52
1787 1797 2.091102 GACGAACCACTTGACGGGGA 62.091 60.000 0.00 0.00 0.00 4.81
1894 1904 1.683385 CAGGTGAGTCCATCGATGCTA 59.317 52.381 20.25 7.23 39.02 3.49
1895 1905 1.683917 AGGTGAGTCCATCGATGCTAC 59.316 52.381 20.25 18.32 39.02 3.58
1896 1906 1.269831 GGTGAGTCCATCGATGCTACC 60.270 57.143 20.25 16.70 35.97 3.18
1897 1907 1.040646 TGAGTCCATCGATGCTACCC 58.959 55.000 20.25 11.14 0.00 3.69
1898 1908 1.040646 GAGTCCATCGATGCTACCCA 58.959 55.000 20.25 0.00 0.00 4.51
1899 1909 1.620819 GAGTCCATCGATGCTACCCAT 59.379 52.381 20.25 4.73 36.70 4.00
1900 1910 1.345741 AGTCCATCGATGCTACCCATG 59.654 52.381 20.25 3.85 33.29 3.66
1901 1911 0.686789 TCCATCGATGCTACCCATGG 59.313 55.000 20.25 4.14 36.15 3.66
1940 1959 0.596577 GCCGATCTGCATCTACCGTA 59.403 55.000 4.00 0.00 0.00 4.02
1941 1960 1.202582 GCCGATCTGCATCTACCGTAT 59.797 52.381 4.00 0.00 0.00 3.06
1962 1981 9.454585 CCGTATGAATTTGATACTAGACGTAAA 57.545 33.333 0.00 0.00 0.00 2.01
1966 1985 8.181487 TGAATTTGATACTAGACGTAAACTGC 57.819 34.615 0.00 0.00 0.00 4.40
1968 1987 5.550232 TTGATACTAGACGTAAACTGCGA 57.450 39.130 0.00 0.00 0.00 5.10
1985 2004 7.667043 AACTGCGATCATTTACTTGTAAGAA 57.333 32.000 0.00 0.00 0.00 2.52
1986 2005 7.849804 ACTGCGATCATTTACTTGTAAGAAT 57.150 32.000 0.00 0.00 0.00 2.40
2035 2056 1.470996 GCTGGATCGAGGAGATGGCT 61.471 60.000 6.88 0.00 40.26 4.75
2057 2078 1.129251 GGTACGTGAAGTCGATCGACA 59.871 52.381 40.51 23.73 46.76 4.35
2059 2080 0.168348 ACGTGAAGTCGATCGACAGG 59.832 55.000 40.51 29.24 46.76 4.00
2060 2081 0.446616 CGTGAAGTCGATCGACAGGA 59.553 55.000 40.51 24.78 46.76 3.86
2101 2122 3.846430 GAGGGGTTCTACGGCCCG 61.846 72.222 0.00 0.00 45.74 6.13
2122 2143 3.378399 GAGCCCACCGGAGAAGCTC 62.378 68.421 21.42 21.42 42.74 4.09
2188 2209 1.561643 TCCGCAACTCCAAGATCTCT 58.438 50.000 0.00 0.00 0.00 3.10
2296 2328 1.086634 GTTGGATGAGACGCCAGCTC 61.087 60.000 0.00 0.00 35.23 4.09
2321 2353 4.107051 GGCTGCTGCACGCGAATT 62.107 61.111 15.93 0.00 43.27 2.17
2877 2912 6.544197 TCTGTATTTTCCTTGCTGTGTTGTTA 59.456 34.615 0.00 0.00 0.00 2.41
3059 3094 1.613317 ATGGAGCACCGACGAATCCA 61.613 55.000 11.06 11.06 43.82 3.41
3066 3101 0.460284 ACCGACGAATCCATGCTCAC 60.460 55.000 0.00 0.00 0.00 3.51
3107 3150 1.202639 TGTGGCGAGGCATAGTATTGG 60.203 52.381 1.94 0.00 0.00 3.16
3123 3166 9.520204 CATAGTATTGGTTTTCATCCATTTGTC 57.480 33.333 0.00 0.00 34.75 3.18
3156 3199 2.093500 AGTAACTCGCCATTGAGCATGA 60.093 45.455 0.00 0.00 39.68 3.07
3197 3254 4.886971 GATGAACTCATCGCTGTTGTTAC 58.113 43.478 4.02 0.00 42.66 2.50
3198 3255 3.723260 TGAACTCATCGCTGTTGTTACA 58.277 40.909 0.00 0.00 0.00 2.41
3199 3256 3.493129 TGAACTCATCGCTGTTGTTACAC 59.507 43.478 0.00 0.00 0.00 2.90
3200 3257 2.058798 ACTCATCGCTGTTGTTACACG 58.941 47.619 0.00 0.00 33.25 4.49
3201 3258 0.787787 TCATCGCTGTTGTTACACGC 59.212 50.000 0.00 0.00 32.55 5.34
3202 3259 0.510790 CATCGCTGTTGTTACACGCA 59.489 50.000 0.00 0.00 32.55 5.24
3203 3260 1.070242 CATCGCTGTTGTTACACGCAA 60.070 47.619 0.00 0.00 32.55 4.85
3204 3261 1.007580 TCGCTGTTGTTACACGCAAA 58.992 45.000 0.00 0.00 32.55 3.68
3205 3262 1.397343 TCGCTGTTGTTACACGCAAAA 59.603 42.857 0.00 0.00 32.55 2.44
3206 3263 2.159558 TCGCTGTTGTTACACGCAAAAA 60.160 40.909 0.00 0.00 32.55 1.94
3241 3298 3.251332 TGTGACCACAAACAACCGT 57.749 47.368 0.00 0.00 38.56 4.83
3245 3304 0.810823 GACCACAAACAACCGTCGGA 60.811 55.000 20.51 0.00 0.00 4.55
3339 3402 1.126079 GTATCGTATTCGTGGCGTGG 58.874 55.000 0.00 0.00 38.33 4.94
3367 3431 0.535335 GCGAGTGAGTTGGGGATACA 59.465 55.000 0.00 0.00 39.74 2.29
3398 3462 1.142465 AGCAATGTGATGGCCTAGAGG 59.858 52.381 3.32 0.00 38.53 3.69
3399 3463 1.141657 GCAATGTGATGGCCTAGAGGA 59.858 52.381 3.32 0.00 37.39 3.71
3400 3464 2.809665 GCAATGTGATGGCCTAGAGGAG 60.810 54.545 3.32 0.00 37.39 3.69
3411 3475 2.022718 CTAGAGGAGGAAGGGGGATG 57.977 60.000 0.00 0.00 0.00 3.51
3412 3476 1.505538 CTAGAGGAGGAAGGGGGATGA 59.494 57.143 0.00 0.00 0.00 2.92
3413 3477 0.030603 AGAGGAGGAAGGGGGATGAC 60.031 60.000 0.00 0.00 0.00 3.06
3414 3478 1.004891 AGGAGGAAGGGGGATGACC 59.995 63.158 0.00 0.00 39.11 4.02
3415 3479 1.004891 GGAGGAAGGGGGATGACCT 59.995 63.158 0.00 0.00 40.96 3.85
3416 3480 0.267960 GGAGGAAGGGGGATGACCTA 59.732 60.000 0.00 0.00 37.35 3.08
3417 3481 1.723288 GAGGAAGGGGGATGACCTAG 58.277 60.000 0.00 0.00 37.35 3.02
3418 3482 1.220750 GAGGAAGGGGGATGACCTAGA 59.779 57.143 0.00 0.00 37.35 2.43
3419 3483 1.221781 AGGAAGGGGGATGACCTAGAG 59.778 57.143 0.00 0.00 37.35 2.43
3440 3504 1.076705 GGAAGGGGGACCATCTTGC 60.077 63.158 3.65 3.18 40.34 4.01
3442 3506 0.039618 GAAGGGGGACCATCTTGCAA 59.960 55.000 0.00 0.00 40.34 4.08
3446 3510 2.267045 GGGACCATCTTGCAACACC 58.733 57.895 0.00 0.00 0.00 4.16
3449 3513 0.605319 GACCATCTTGCAACACCCGA 60.605 55.000 0.00 0.00 0.00 5.14
3452 3516 1.545582 CCATCTTGCAACACCCGAATT 59.454 47.619 0.00 0.00 0.00 2.17
3470 3534 3.771577 ATTCACGAGGAAAGAAGTGGT 57.228 42.857 0.00 0.00 39.39 4.16
3472 3536 3.655276 TCACGAGGAAAGAAGTGGTAC 57.345 47.619 0.00 0.00 35.50 3.34
3482 3546 5.391843 GGAAAGAAGTGGTACGAGTAGAGAC 60.392 48.000 0.00 0.00 0.00 3.36
3538 3603 8.578308 TTTGTCTCTCAAATTTGCAATAAGTG 57.422 30.769 13.54 6.46 40.56 3.16
3566 3631 7.676683 ATCTGGTCCTTTATCTTTACTAGCA 57.323 36.000 0.00 0.00 0.00 3.49
3567 3632 7.490657 TCTGGTCCTTTATCTTTACTAGCAA 57.509 36.000 0.00 0.00 0.00 3.91
3568 3633 7.913789 TCTGGTCCTTTATCTTTACTAGCAAA 58.086 34.615 0.00 0.00 0.00 3.68
3569 3634 8.380099 TCTGGTCCTTTATCTTTACTAGCAAAA 58.620 33.333 0.00 0.00 0.00 2.44
3570 3635 8.561738 TGGTCCTTTATCTTTACTAGCAAAAG 57.438 34.615 10.53 10.53 35.66 2.27
3571 3636 8.380099 TGGTCCTTTATCTTTACTAGCAAAAGA 58.620 33.333 18.22 18.22 44.64 2.52
3572 3637 8.884726 GGTCCTTTATCTTTACTAGCAAAAGAG 58.115 37.037 19.77 10.41 43.98 2.85
3573 3638 8.391859 GTCCTTTATCTTTACTAGCAAAAGAGC 58.608 37.037 19.77 0.00 43.98 4.09
3574 3639 7.553044 TCCTTTATCTTTACTAGCAAAAGAGCC 59.447 37.037 19.77 0.00 43.98 4.70
3575 3640 7.201741 CCTTTATCTTTACTAGCAAAAGAGCCC 60.202 40.741 19.77 0.00 43.98 5.19
3576 3641 3.596214 TCTTTACTAGCAAAAGAGCCCG 58.404 45.455 14.00 0.00 37.89 6.13
3577 3642 3.007614 TCTTTACTAGCAAAAGAGCCCGT 59.992 43.478 14.00 0.00 37.89 5.28
3578 3643 2.380084 TACTAGCAAAAGAGCCCGTG 57.620 50.000 0.00 0.00 34.23 4.94
3579 3644 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
3580 3645 1.970917 CTAGCAAAAGAGCCCGTGCG 61.971 60.000 0.00 0.00 44.33 5.34
3581 3646 2.725203 TAGCAAAAGAGCCCGTGCGT 62.725 55.000 0.00 0.00 44.33 5.24
3582 3647 3.030652 CAAAAGAGCCCGTGCGTT 58.969 55.556 0.00 0.00 44.33 4.84
3583 3648 1.370414 CAAAAGAGCCCGTGCGTTG 60.370 57.895 0.00 0.00 44.33 4.10
3584 3649 3.194272 AAAAGAGCCCGTGCGTTGC 62.194 57.895 0.00 0.00 44.33 4.17
3585 3650 4.927782 AAGAGCCCGTGCGTTGCA 62.928 61.111 6.22 0.00 44.33 4.08
3586 3651 4.927782 AGAGCCCGTGCGTTGCAA 62.928 61.111 0.00 0.00 41.47 4.08
3587 3652 3.737172 GAGCCCGTGCGTTGCAAT 61.737 61.111 0.59 0.00 41.47 3.56
3588 3653 3.951655 GAGCCCGTGCGTTGCAATG 62.952 63.158 14.54 14.54 41.47 2.82
3589 3654 4.036804 GCCCGTGCGTTGCAATGA 62.037 61.111 22.81 4.86 41.47 2.57
3590 3655 2.642129 CCCGTGCGTTGCAATGAA 59.358 55.556 22.81 9.39 41.47 2.57
3591 3656 1.007964 CCCGTGCGTTGCAATGAAA 60.008 52.632 22.81 6.61 41.47 2.69
3592 3657 0.596083 CCCGTGCGTTGCAATGAAAA 60.596 50.000 22.81 4.01 41.47 2.29
3593 3658 1.203928 CCGTGCGTTGCAATGAAAAA 58.796 45.000 22.81 1.46 41.47 1.94
3617 3682 5.874895 AAAATAACAGACGCTCTTAACCC 57.125 39.130 0.00 0.00 0.00 4.11
3618 3683 4.546829 AATAACAGACGCTCTTAACCCA 57.453 40.909 0.00 0.00 0.00 4.51
3619 3684 2.922740 AACAGACGCTCTTAACCCAA 57.077 45.000 0.00 0.00 0.00 4.12
3620 3685 3.418684 AACAGACGCTCTTAACCCAAT 57.581 42.857 0.00 0.00 0.00 3.16
3621 3686 4.546829 AACAGACGCTCTTAACCCAATA 57.453 40.909 0.00 0.00 0.00 1.90
3622 3687 4.546829 ACAGACGCTCTTAACCCAATAA 57.453 40.909 0.00 0.00 0.00 1.40
3623 3688 4.251268 ACAGACGCTCTTAACCCAATAAC 58.749 43.478 0.00 0.00 0.00 1.89
3624 3689 4.250464 CAGACGCTCTTAACCCAATAACA 58.750 43.478 0.00 0.00 0.00 2.41
3625 3690 4.693566 CAGACGCTCTTAACCCAATAACAA 59.306 41.667 0.00 0.00 0.00 2.83
3626 3691 5.354234 CAGACGCTCTTAACCCAATAACAAT 59.646 40.000 0.00 0.00 0.00 2.71
3627 3692 5.944007 AGACGCTCTTAACCCAATAACAATT 59.056 36.000 0.00 0.00 0.00 2.32
3628 3693 7.065324 CAGACGCTCTTAACCCAATAACAATTA 59.935 37.037 0.00 0.00 0.00 1.40
3629 3694 7.065443 AGACGCTCTTAACCCAATAACAATTAC 59.935 37.037 0.00 0.00 0.00 1.89
3630 3695 6.882678 ACGCTCTTAACCCAATAACAATTACT 59.117 34.615 0.00 0.00 0.00 2.24
3631 3696 7.065443 ACGCTCTTAACCCAATAACAATTACTC 59.935 37.037 0.00 0.00 0.00 2.59
3632 3697 7.065324 CGCTCTTAACCCAATAACAATTACTCA 59.935 37.037 0.00 0.00 0.00 3.41
3633 3698 8.736244 GCTCTTAACCCAATAACAATTACTCAA 58.264 33.333 0.00 0.00 0.00 3.02
3637 3702 7.462571 AACCCAATAACAATTACTCAAGACC 57.537 36.000 0.00 0.00 0.00 3.85
3638 3703 5.949952 ACCCAATAACAATTACTCAAGACCC 59.050 40.000 0.00 0.00 0.00 4.46
3639 3704 6.187682 CCCAATAACAATTACTCAAGACCCT 58.812 40.000 0.00 0.00 0.00 4.34
3640 3705 7.037153 ACCCAATAACAATTACTCAAGACCCTA 60.037 37.037 0.00 0.00 0.00 3.53
3641 3706 7.832187 CCCAATAACAATTACTCAAGACCCTAA 59.168 37.037 0.00 0.00 0.00 2.69
3642 3707 9.408648 CCAATAACAATTACTCAAGACCCTAAT 57.591 33.333 0.00 0.00 0.00 1.73
3644 3709 9.975218 AATAACAATTACTCAAGACCCTAATGT 57.025 29.630 0.00 0.00 0.00 2.71
3645 3710 7.687941 AACAATTACTCAAGACCCTAATGTG 57.312 36.000 0.00 0.00 0.00 3.21
3646 3711 6.779860 ACAATTACTCAAGACCCTAATGTGT 58.220 36.000 0.00 0.00 0.00 3.72
3647 3712 7.231467 ACAATTACTCAAGACCCTAATGTGTT 58.769 34.615 0.00 0.00 0.00 3.32
3648 3713 7.390718 ACAATTACTCAAGACCCTAATGTGTTC 59.609 37.037 0.00 0.00 0.00 3.18
3649 3714 4.974645 ACTCAAGACCCTAATGTGTTCA 57.025 40.909 0.00 0.00 0.00 3.18
3650 3715 4.642429 ACTCAAGACCCTAATGTGTTCAC 58.358 43.478 0.00 0.00 0.00 3.18
3651 3716 4.102524 ACTCAAGACCCTAATGTGTTCACA 59.897 41.667 8.09 8.09 0.00 3.58
3652 3717 5.221925 ACTCAAGACCCTAATGTGTTCACAT 60.222 40.000 11.97 11.97 0.00 3.21
3653 3718 5.245531 TCAAGACCCTAATGTGTTCACATC 58.754 41.667 17.02 6.42 0.00 3.06
3654 3719 4.222124 AGACCCTAATGTGTTCACATCC 57.778 45.455 17.02 5.16 0.00 3.51
3655 3720 3.846588 AGACCCTAATGTGTTCACATCCT 59.153 43.478 17.02 7.03 0.00 3.24
3656 3721 4.289672 AGACCCTAATGTGTTCACATCCTT 59.710 41.667 17.02 7.09 0.00 3.36
3657 3722 4.998051 ACCCTAATGTGTTCACATCCTTT 58.002 39.130 17.02 6.78 0.00 3.11
3658 3723 6.012858 AGACCCTAATGTGTTCACATCCTTTA 60.013 38.462 17.02 7.47 0.00 1.85
3659 3724 6.731467 ACCCTAATGTGTTCACATCCTTTAT 58.269 36.000 17.02 5.17 0.00 1.40
3660 3725 7.182060 ACCCTAATGTGTTCACATCCTTTATT 58.818 34.615 17.02 5.24 0.00 1.40
3661 3726 7.673926 ACCCTAATGTGTTCACATCCTTTATTT 59.326 33.333 17.02 4.62 0.00 1.40
3662 3727 8.531146 CCCTAATGTGTTCACATCCTTTATTTT 58.469 33.333 17.02 4.01 0.00 1.82
3663 3728 9.927668 CCTAATGTGTTCACATCCTTTATTTTT 57.072 29.630 17.02 3.40 0.00 1.94
3667 3732 9.691362 ATGTGTTCACATCCTTTATTTTTACAC 57.309 29.630 11.97 0.00 33.52 2.90
3668 3733 7.858382 TGTGTTCACATCCTTTATTTTTACACG 59.142 33.333 1.23 0.00 35.12 4.49
3669 3734 7.325097 GTGTTCACATCCTTTATTTTTACACGG 59.675 37.037 0.00 0.00 0.00 4.94
3670 3735 5.945155 TCACATCCTTTATTTTTACACGGC 58.055 37.500 0.00 0.00 0.00 5.68
3671 3736 5.473846 TCACATCCTTTATTTTTACACGGCA 59.526 36.000 0.00 0.00 0.00 5.69
3672 3737 6.151985 TCACATCCTTTATTTTTACACGGCAT 59.848 34.615 0.00 0.00 0.00 4.40
3673 3738 6.472163 CACATCCTTTATTTTTACACGGCATC 59.528 38.462 0.00 0.00 0.00 3.91
3674 3739 6.151985 ACATCCTTTATTTTTACACGGCATCA 59.848 34.615 0.00 0.00 0.00 3.07
3675 3740 5.945155 TCCTTTATTTTTACACGGCATCAC 58.055 37.500 0.00 0.00 0.00 3.06
3676 3741 5.473846 TCCTTTATTTTTACACGGCATCACA 59.526 36.000 0.00 0.00 0.00 3.58
3677 3742 6.151985 TCCTTTATTTTTACACGGCATCACAT 59.848 34.615 0.00 0.00 0.00 3.21
3678 3743 6.811170 CCTTTATTTTTACACGGCATCACATT 59.189 34.615 0.00 0.00 0.00 2.71
3679 3744 7.330700 CCTTTATTTTTACACGGCATCACATTT 59.669 33.333 0.00 0.00 0.00 2.32
3680 3745 7.573916 TTATTTTTACACGGCATCACATTTG 57.426 32.000 0.00 0.00 0.00 2.32
3681 3746 4.576216 TTTTACACGGCATCACATTTGT 57.424 36.364 0.00 0.00 0.00 2.83
3682 3747 3.550950 TTACACGGCATCACATTTGTG 57.449 42.857 4.29 4.29 46.91 3.33
3683 3748 1.317613 ACACGGCATCACATTTGTGT 58.682 45.000 10.30 0.00 45.76 3.72
3684 3749 1.680735 ACACGGCATCACATTTGTGTT 59.319 42.857 10.30 0.00 45.76 3.32
3685 3750 2.052891 CACGGCATCACATTTGTGTTG 58.947 47.619 14.54 14.54 45.76 3.33
3686 3751 1.680735 ACGGCATCACATTTGTGTTGT 59.319 42.857 18.17 6.83 45.76 3.32
3687 3752 2.287547 ACGGCATCACATTTGTGTTGTC 60.288 45.455 18.17 16.02 45.76 3.18
3688 3753 2.318578 GGCATCACATTTGTGTTGTCG 58.681 47.619 18.17 4.37 45.76 4.35
3689 3754 2.031245 GGCATCACATTTGTGTTGTCGA 60.031 45.455 18.17 0.00 45.76 4.20
3690 3755 3.366273 GGCATCACATTTGTGTTGTCGAT 60.366 43.478 18.17 0.59 45.76 3.59
3691 3756 3.605056 GCATCACATTTGTGTTGTCGATG 59.395 43.478 18.17 11.41 45.76 3.84
3692 3757 3.894782 TCACATTTGTGTTGTCGATGG 57.105 42.857 10.30 0.00 45.76 3.51
3693 3758 3.210227 TCACATTTGTGTTGTCGATGGT 58.790 40.909 10.30 0.00 45.76 3.55
3694 3759 3.003171 TCACATTTGTGTTGTCGATGGTG 59.997 43.478 10.30 0.00 45.76 4.17
3695 3760 2.293122 ACATTTGTGTTGTCGATGGTGG 59.707 45.455 0.00 0.00 0.00 4.61
3696 3761 2.045561 TTTGTGTTGTCGATGGTGGT 57.954 45.000 0.00 0.00 0.00 4.16
3697 3762 1.588674 TTGTGTTGTCGATGGTGGTC 58.411 50.000 0.00 0.00 0.00 4.02
3698 3763 0.756294 TGTGTTGTCGATGGTGGTCT 59.244 50.000 0.00 0.00 0.00 3.85
3699 3764 1.270094 TGTGTTGTCGATGGTGGTCTC 60.270 52.381 0.00 0.00 0.00 3.36
3700 3765 1.044611 TGTTGTCGATGGTGGTCTCA 58.955 50.000 0.00 0.00 0.00 3.27
3701 3766 1.000843 TGTTGTCGATGGTGGTCTCAG 59.999 52.381 0.00 0.00 0.00 3.35
3702 3767 1.000955 GTTGTCGATGGTGGTCTCAGT 59.999 52.381 0.00 0.00 0.00 3.41
3703 3768 0.603065 TGTCGATGGTGGTCTCAGTG 59.397 55.000 0.00 0.00 0.00 3.66
3704 3769 0.737715 GTCGATGGTGGTCTCAGTGC 60.738 60.000 0.00 0.00 0.00 4.40
3705 3770 0.900182 TCGATGGTGGTCTCAGTGCT 60.900 55.000 0.00 0.00 0.00 4.40
3706 3771 0.459237 CGATGGTGGTCTCAGTGCTC 60.459 60.000 0.00 0.00 0.00 4.26
3707 3772 0.610174 GATGGTGGTCTCAGTGCTCA 59.390 55.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.694072 TGCCAAGTTATTGAAGAATCGGG 59.306 43.478 0.00 0.00 38.83 5.14
1 2 4.963276 TGCCAAGTTATTGAAGAATCGG 57.037 40.909 0.00 0.00 38.83 4.18
2 3 6.252015 CACATTGCCAAGTTATTGAAGAATCG 59.748 38.462 0.00 0.00 38.83 3.34
3 4 6.532657 CCACATTGCCAAGTTATTGAAGAATC 59.467 38.462 0.00 0.00 38.83 2.52
4 5 6.014327 ACCACATTGCCAAGTTATTGAAGAAT 60.014 34.615 0.00 0.00 38.83 2.40
5 6 5.304101 ACCACATTGCCAAGTTATTGAAGAA 59.696 36.000 0.00 0.00 38.83 2.52
6 7 4.832266 ACCACATTGCCAAGTTATTGAAGA 59.168 37.500 0.00 0.00 38.83 2.87
7 8 5.138125 ACCACATTGCCAAGTTATTGAAG 57.862 39.130 0.00 0.00 38.83 3.02
8 9 5.543507 AACCACATTGCCAAGTTATTGAA 57.456 34.783 0.00 0.00 38.83 2.69
9 10 5.543507 AAACCACATTGCCAAGTTATTGA 57.456 34.783 0.00 0.00 38.83 2.57
10 11 5.107530 CGAAAACCACATTGCCAAGTTATTG 60.108 40.000 0.00 0.00 36.09 1.90
11 12 4.987912 CGAAAACCACATTGCCAAGTTATT 59.012 37.500 0.00 0.00 0.00 1.40
12 13 4.555262 CGAAAACCACATTGCCAAGTTAT 58.445 39.130 0.00 0.00 0.00 1.89
68 70 7.594015 GGCAGTTATCATGCATTCATTAAGAAG 59.406 37.037 0.00 0.00 45.68 2.85
84 86 6.567687 TTTTCTTCGAAATGGCAGTTATCA 57.432 33.333 0.00 0.00 0.00 2.15
124 126 1.401552 TGGCGCATGAGATTGCTAAAC 59.598 47.619 10.83 0.00 40.54 2.01
141 143 1.577328 CGTCGGGGCAATATGATGGC 61.577 60.000 0.00 0.00 44.56 4.40
153 155 2.285083 TGCTAAAATCAATCGTCGGGG 58.715 47.619 0.00 0.00 0.00 5.73
209 211 3.652274 GCAAATTGCAACTAAGGAAGCA 58.348 40.909 13.73 0.00 44.26 3.91
231 233 0.616891 AAACCGGGCGTAGAAATCCT 59.383 50.000 6.32 0.00 0.00 3.24
239 241 1.960250 CCGAACAAAACCGGGCGTA 60.960 57.895 6.32 0.00 41.89 4.42
243 245 1.159098 TTCGTCCGAACAAAACCGGG 61.159 55.000 6.32 0.00 45.36 5.73
244 246 0.656785 TTTCGTCCGAACAAAACCGG 59.343 50.000 0.00 0.00 46.57 5.28
251 253 2.739913 GGTCATCAATTTCGTCCGAACA 59.260 45.455 0.91 0.00 33.41 3.18
254 256 2.753055 TGGTCATCAATTTCGTCCGA 57.247 45.000 0.00 0.00 0.00 4.55
257 259 4.319046 CCATCGATGGTCATCAATTTCGTC 60.319 45.833 32.39 0.00 43.05 4.20
272 274 5.277683 GGACACTTTTGATCATCCATCGATG 60.278 44.000 18.76 18.76 46.30 3.84
273 275 4.818546 GGACACTTTTGATCATCCATCGAT 59.181 41.667 0.00 0.00 33.61 3.59
299 301 0.958822 AAATGTTTGGACCAGACGGC 59.041 50.000 10.37 0.00 34.57 5.68
326 328 4.515191 GTGTCTGTACTGATGCTGGAAAAA 59.485 41.667 5.69 0.00 0.00 1.94
327 329 4.065088 GTGTCTGTACTGATGCTGGAAAA 58.935 43.478 5.69 0.00 0.00 2.29
328 330 3.070878 TGTGTCTGTACTGATGCTGGAAA 59.929 43.478 5.69 0.00 0.00 3.13
329 331 2.632512 TGTGTCTGTACTGATGCTGGAA 59.367 45.455 5.69 0.00 0.00 3.53
330 332 2.247358 TGTGTCTGTACTGATGCTGGA 58.753 47.619 5.69 0.00 0.00 3.86
331 333 2.749280 TGTGTCTGTACTGATGCTGG 57.251 50.000 5.69 0.00 0.00 4.85
332 334 2.414481 GCTTGTGTCTGTACTGATGCTG 59.586 50.000 5.69 0.00 0.00 4.41
333 335 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
334 336 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
335 337 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
336 338 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
337 339 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
338 340 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
339 341 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
340 342 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
341 343 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
342 344 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
343 345 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
344 346 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
345 347 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
346 348 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
347 349 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
348 350 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
349 351 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
350 352 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
351 353 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
354 356 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
355 357 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
356 358 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
357 359 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
358 360 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
359 361 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
360 362 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
361 363 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
362 364 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
363 365 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
364 366 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
365 367 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
366 368 2.751166 ATAGGGATGAGTGTATGCGC 57.249 50.000 0.00 0.00 0.00 6.09
367 369 4.621460 CGTTTATAGGGATGAGTGTATGCG 59.379 45.833 0.00 0.00 0.00 4.73
368 370 4.389077 GCGTTTATAGGGATGAGTGTATGC 59.611 45.833 0.00 0.00 0.00 3.14
369 371 5.405571 GTGCGTTTATAGGGATGAGTGTATG 59.594 44.000 0.00 0.00 0.00 2.39
370 372 5.069914 TGTGCGTTTATAGGGATGAGTGTAT 59.930 40.000 0.00 0.00 0.00 2.29
371 373 4.403113 TGTGCGTTTATAGGGATGAGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
372 374 3.196901 TGTGCGTTTATAGGGATGAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
373 375 3.555956 GTGTGCGTTTATAGGGATGAGTG 59.444 47.826 0.00 0.00 0.00 3.51
374 376 3.196901 TGTGTGCGTTTATAGGGATGAGT 59.803 43.478 0.00 0.00 0.00 3.41
375 377 3.555956 GTGTGTGCGTTTATAGGGATGAG 59.444 47.826 0.00 0.00 0.00 2.90
376 378 3.527533 GTGTGTGCGTTTATAGGGATGA 58.472 45.455 0.00 0.00 0.00 2.92
377 379 2.284150 CGTGTGTGCGTTTATAGGGATG 59.716 50.000 0.00 0.00 0.00 3.51
378 380 2.546778 CGTGTGTGCGTTTATAGGGAT 58.453 47.619 0.00 0.00 0.00 3.85
379 381 1.999048 CGTGTGTGCGTTTATAGGGA 58.001 50.000 0.00 0.00 0.00 4.20
380 382 0.372334 GCGTGTGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
381 383 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
382 384 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
383 385 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
384 386 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
385 387 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
386 388 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
387 389 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
390 392 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
391 393 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
392 394 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
393 395 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
394 396 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
395 397 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
396 398 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
397 399 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
398 400 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
399 401 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
400 402 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
401 403 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
402 404 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
403 405 2.183679 GAGGTGCTCATAGGGATAGGG 58.816 57.143 0.00 0.00 0.00 3.53
404 406 2.183679 GGAGGTGCTCATAGGGATAGG 58.816 57.143 0.00 0.00 31.08 2.57
405 407 2.894731 TGGAGGTGCTCATAGGGATAG 58.105 52.381 0.00 0.00 31.08 2.08
406 408 3.116746 TCTTGGAGGTGCTCATAGGGATA 60.117 47.826 0.00 0.00 31.08 2.59
407 409 2.053244 CTTGGAGGTGCTCATAGGGAT 58.947 52.381 0.00 0.00 31.08 3.85
408 410 1.008327 TCTTGGAGGTGCTCATAGGGA 59.992 52.381 0.00 0.00 31.08 4.20
409 411 1.415659 CTCTTGGAGGTGCTCATAGGG 59.584 57.143 0.00 0.00 31.08 3.53
410 412 2.102252 GTCTCTTGGAGGTGCTCATAGG 59.898 54.545 0.00 0.00 31.08 2.57
411 413 3.030291 AGTCTCTTGGAGGTGCTCATAG 58.970 50.000 0.00 0.00 31.08 2.23
412 414 2.762887 CAGTCTCTTGGAGGTGCTCATA 59.237 50.000 0.00 0.00 31.08 2.15
413 415 1.554160 CAGTCTCTTGGAGGTGCTCAT 59.446 52.381 0.00 0.00 31.08 2.90
414 416 0.972134 CAGTCTCTTGGAGGTGCTCA 59.028 55.000 0.00 0.00 31.08 4.26
415 417 1.204467 CTCAGTCTCTTGGAGGTGCTC 59.796 57.143 0.00 0.00 0.00 4.26
416 418 1.265236 CTCAGTCTCTTGGAGGTGCT 58.735 55.000 0.00 0.00 0.00 4.40
417 419 0.390998 GCTCAGTCTCTTGGAGGTGC 60.391 60.000 0.00 0.00 0.00 5.01
418 420 0.248843 GGCTCAGTCTCTTGGAGGTG 59.751 60.000 0.00 0.00 0.00 4.00
419 421 1.254284 CGGCTCAGTCTCTTGGAGGT 61.254 60.000 0.00 0.00 0.00 3.85
420 422 1.515020 CGGCTCAGTCTCTTGGAGG 59.485 63.158 0.00 0.00 0.00 4.30
421 423 1.515020 CCGGCTCAGTCTCTTGGAG 59.485 63.158 0.00 0.00 0.00 3.86
422 424 2.650116 GCCGGCTCAGTCTCTTGGA 61.650 63.158 22.15 0.00 0.00 3.53
423 425 2.125350 GCCGGCTCAGTCTCTTGG 60.125 66.667 22.15 0.00 0.00 3.61
424 426 0.461548 TATGCCGGCTCAGTCTCTTG 59.538 55.000 29.70 0.00 0.00 3.02
425 427 1.342819 GATATGCCGGCTCAGTCTCTT 59.657 52.381 29.70 1.60 0.00 2.85
426 428 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
427 429 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
428 430 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
429 431 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
430 432 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
431 433 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
432 434 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
433 435 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
434 436 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
435 437 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
436 438 6.820152 TCATAAATCTCAAGATGATATGCCGG 59.180 38.462 0.00 0.00 36.32 6.13
437 439 7.838771 TCATAAATCTCAAGATGATATGCCG 57.161 36.000 15.00 0.00 36.32 5.69
438 440 8.182881 GCTTCATAAATCTCAAGATGATATGCC 58.817 37.037 15.00 7.54 36.32 4.40
439 441 8.182881 GGCTTCATAAATCTCAAGATGATATGC 58.817 37.037 15.00 8.41 36.32 3.14
440 442 9.227777 TGGCTTCATAAATCTCAAGATGATATG 57.772 33.333 14.26 14.26 36.96 1.78
441 443 9.228949 GTGGCTTCATAAATCTCAAGATGATAT 57.771 33.333 0.00 0.00 34.49 1.63
442 444 7.663081 GGTGGCTTCATAAATCTCAAGATGATA 59.337 37.037 0.00 0.00 34.49 2.15
443 445 6.489361 GGTGGCTTCATAAATCTCAAGATGAT 59.511 38.462 0.00 0.00 34.49 2.45
444 446 5.824624 GGTGGCTTCATAAATCTCAAGATGA 59.175 40.000 0.00 0.00 34.49 2.92
445 447 5.591472 TGGTGGCTTCATAAATCTCAAGATG 59.409 40.000 0.00 0.00 34.49 2.90
446 448 5.759059 TGGTGGCTTCATAAATCTCAAGAT 58.241 37.500 0.00 0.00 36.07 2.40
447 449 5.178096 TGGTGGCTTCATAAATCTCAAGA 57.822 39.130 0.00 0.00 0.00 3.02
448 450 6.206243 CCTATGGTGGCTTCATAAATCTCAAG 59.794 42.308 0.00 0.00 0.00 3.02
449 451 6.064060 CCTATGGTGGCTTCATAAATCTCAA 58.936 40.000 0.00 0.00 0.00 3.02
450 452 5.132648 ACCTATGGTGGCTTCATAAATCTCA 59.867 40.000 0.00 0.00 32.98 3.27
451 453 5.625150 ACCTATGGTGGCTTCATAAATCTC 58.375 41.667 0.00 0.00 32.98 2.75
452 454 5.653255 ACCTATGGTGGCTTCATAAATCT 57.347 39.130 0.00 0.00 32.98 2.40
466 468 1.664321 GACGACGAGGCACCTATGGT 61.664 60.000 0.00 0.00 35.62 3.55
467 469 1.065928 GACGACGAGGCACCTATGG 59.934 63.158 0.00 0.00 0.00 2.74
468 470 1.298413 CGACGACGAGGCACCTATG 60.298 63.158 0.00 0.00 42.66 2.23
469 471 1.450848 TCGACGACGAGGCACCTAT 60.451 57.895 5.75 0.00 43.81 2.57
470 472 2.046988 TCGACGACGAGGCACCTA 60.047 61.111 5.75 0.00 43.81 3.08
491 493 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
492 494 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
493 495 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
494 496 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
495 497 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
496 498 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
497 499 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
498 500 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
499 501 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
500 502 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
501 503 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
502 504 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
534 536 5.807011 GTGCTCGCATTATTTCTGGATTTTT 59.193 36.000 0.00 0.00 0.00 1.94
535 537 5.343249 GTGCTCGCATTATTTCTGGATTTT 58.657 37.500 0.00 0.00 0.00 1.82
536 538 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
537 539 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
538 540 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
539 541 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
540 542 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
541 543 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
542 544 2.292267 CCTGGTGCTCGCATTATTTCT 58.708 47.619 0.00 0.00 0.00 2.52
543 545 2.017049 ACCTGGTGCTCGCATTATTTC 58.983 47.619 0.00 0.00 0.00 2.17
544 546 2.128771 ACCTGGTGCTCGCATTATTT 57.871 45.000 0.00 0.00 0.00 1.40
545 547 2.128771 AACCTGGTGCTCGCATTATT 57.871 45.000 0.00 0.00 0.00 1.40
546 548 2.128771 AAACCTGGTGCTCGCATTAT 57.871 45.000 0.00 0.00 0.00 1.28
547 549 1.904287 AAAACCTGGTGCTCGCATTA 58.096 45.000 0.00 0.00 0.00 1.90
548 550 1.904287 TAAAACCTGGTGCTCGCATT 58.096 45.000 0.00 0.00 0.00 3.56
549 551 1.904287 TTAAAACCTGGTGCTCGCAT 58.096 45.000 0.00 0.00 0.00 4.73
550 552 1.335496 GTTTAAAACCTGGTGCTCGCA 59.665 47.619 0.00 0.00 0.00 5.10
551 553 2.046283 GTTTAAAACCTGGTGCTCGC 57.954 50.000 0.00 0.00 0.00 5.03
570 572 1.824852 GGTATTTTCAAGCCACCAGGG 59.175 52.381 0.00 0.00 40.85 4.45
571 573 2.231235 GTGGTATTTTCAAGCCACCAGG 59.769 50.000 0.00 0.00 43.96 4.45
572 574 3.575965 GTGGTATTTTCAAGCCACCAG 57.424 47.619 0.00 0.00 43.96 4.00
576 578 4.098914 AGACAGTGGTATTTTCAAGCCA 57.901 40.909 0.00 0.00 0.00 4.75
577 579 4.395231 GGTAGACAGTGGTATTTTCAAGCC 59.605 45.833 0.00 0.00 0.00 4.35
578 580 5.246307 AGGTAGACAGTGGTATTTTCAAGC 58.754 41.667 0.00 0.00 0.00 4.01
579 581 7.333672 GGTTAGGTAGACAGTGGTATTTTCAAG 59.666 40.741 0.00 0.00 0.00 3.02
580 582 7.163441 GGTTAGGTAGACAGTGGTATTTTCAA 58.837 38.462 0.00 0.00 0.00 2.69
581 583 6.270463 TGGTTAGGTAGACAGTGGTATTTTCA 59.730 38.462 0.00 0.00 0.00 2.69
582 584 6.704310 TGGTTAGGTAGACAGTGGTATTTTC 58.296 40.000 0.00 0.00 0.00 2.29
583 585 6.691255 TGGTTAGGTAGACAGTGGTATTTT 57.309 37.500 0.00 0.00 0.00 1.82
584 586 6.672657 AGATGGTTAGGTAGACAGTGGTATTT 59.327 38.462 0.00 0.00 0.00 1.40
585 587 6.203072 AGATGGTTAGGTAGACAGTGGTATT 58.797 40.000 0.00 0.00 0.00 1.89
586 588 5.778542 AGATGGTTAGGTAGACAGTGGTAT 58.221 41.667 0.00 0.00 0.00 2.73
587 589 5.202746 AGATGGTTAGGTAGACAGTGGTA 57.797 43.478 0.00 0.00 0.00 3.25
588 590 4.062490 AGATGGTTAGGTAGACAGTGGT 57.938 45.455 0.00 0.00 0.00 4.16
589 591 6.338937 GTTAAGATGGTTAGGTAGACAGTGG 58.661 44.000 0.00 0.00 0.00 4.00
590 592 6.070995 TGGTTAAGATGGTTAGGTAGACAGTG 60.071 42.308 0.00 0.00 0.00 3.66
591 593 6.021030 TGGTTAAGATGGTTAGGTAGACAGT 58.979 40.000 0.00 0.00 0.00 3.55
592 594 6.540438 TGGTTAAGATGGTTAGGTAGACAG 57.460 41.667 0.00 0.00 0.00 3.51
593 595 7.289317 CCTATGGTTAAGATGGTTAGGTAGACA 59.711 40.741 0.00 0.00 0.00 3.41
594 596 7.289549 ACCTATGGTTAAGATGGTTAGGTAGAC 59.710 40.741 0.00 0.00 36.94 2.59
595 597 7.367828 ACCTATGGTTAAGATGGTTAGGTAGA 58.632 38.462 0.00 0.00 36.94 2.59
596 598 7.613551 ACCTATGGTTAAGATGGTTAGGTAG 57.386 40.000 0.00 0.00 36.94 3.18
597 599 7.147444 CCAACCTATGGTTAAGATGGTTAGGTA 60.147 40.741 1.34 0.00 45.01 3.08
598 600 6.353602 CCAACCTATGGTTAAGATGGTTAGGT 60.354 42.308 1.34 0.00 45.01 3.08
599 601 6.062095 CCAACCTATGGTTAAGATGGTTAGG 58.938 44.000 1.34 0.00 45.01 2.69
632 634 2.323999 TCCAATCAGCCCCAAATGTT 57.676 45.000 0.00 0.00 0.00 2.71
640 642 2.799562 GCGCTAAAAATCCAATCAGCCC 60.800 50.000 0.00 0.00 0.00 5.19
643 645 3.378112 TCCAGCGCTAAAAATCCAATCAG 59.622 43.478 10.99 0.00 0.00 2.90
649 651 2.732282 GCAACTCCAGCGCTAAAAATCC 60.732 50.000 10.99 0.00 0.00 3.01
653 655 1.241315 GGGCAACTCCAGCGCTAAAA 61.241 55.000 10.99 0.00 41.20 1.52
654 656 1.674322 GGGCAACTCCAGCGCTAAA 60.674 57.895 10.99 0.00 41.20 1.85
659 661 0.107703 TCATTAGGGCAACTCCAGCG 60.108 55.000 0.00 0.00 36.21 5.18
742 744 2.418884 GGGCTGAAGGCTAGTGTTACTC 60.419 54.545 3.70 0.00 41.46 2.59
744 746 1.555533 AGGGCTGAAGGCTAGTGTTAC 59.444 52.381 3.70 0.00 41.46 2.50
747 749 1.196012 GTAGGGCTGAAGGCTAGTGT 58.804 55.000 3.70 0.00 41.46 3.55
760 762 1.177256 TATTCGGCGAGGAGTAGGGC 61.177 60.000 10.46 0.00 0.00 5.19
807 809 1.442769 CACACTGTGATACTGGTGGC 58.557 55.000 15.86 0.00 35.23 5.01
871 873 2.653366 AGTAGGAGTGGACTAGTGGGAA 59.347 50.000 0.00 0.00 0.00 3.97
934 936 1.663074 GCTAGAGGAGCGCCATTCG 60.663 63.158 9.88 0.00 42.62 3.34
970 972 2.774633 GGTGGGGTGTTCTTGGGGT 61.775 63.158 0.00 0.00 0.00 4.95
995 997 3.550339 TTGCACGCCGCCATTGTTC 62.550 57.895 0.00 0.00 41.33 3.18
1190 1195 3.133365 ATGTAGAATGGCCGGCCCC 62.133 63.158 41.75 29.09 34.56 5.80
1197 1202 1.670811 CACCCGTTGATGTAGAATGGC 59.329 52.381 0.00 0.00 0.00 4.40
1362 1367 2.203669 TCGAAGTGTCCCGGGGAA 60.204 61.111 23.50 6.24 31.38 3.97
1449 1454 1.074775 CAGGTTGTTGGCCAGGCTA 59.925 57.895 12.43 0.81 0.00 3.93
1545 1550 1.221021 GGCGGGGTCGAAGAAGAAT 59.779 57.895 0.00 0.00 39.69 2.40
1599 1604 2.224079 CGATGCTGCAACTGTTTAGTGT 59.776 45.455 6.36 0.00 37.19 3.55
1604 1609 0.318107 GCACGATGCTGCAACTGTTT 60.318 50.000 6.36 0.00 40.96 2.83
1787 1797 0.249398 GGGTCGTCCTTGTACTGCAT 59.751 55.000 0.00 0.00 0.00 3.96
1894 1904 6.770286 AAATGTGATAGATAGTCCATGGGT 57.230 37.500 13.02 1.93 0.00 4.51
1895 1905 9.170734 CAATAAATGTGATAGATAGTCCATGGG 57.829 37.037 13.02 0.00 0.00 4.00
1896 1906 8.671921 GCAATAAATGTGATAGATAGTCCATGG 58.328 37.037 4.97 4.97 0.00 3.66
1897 1907 8.671921 GGCAATAAATGTGATAGATAGTCCATG 58.328 37.037 0.00 0.00 0.00 3.66
1898 1908 7.550551 CGGCAATAAATGTGATAGATAGTCCAT 59.449 37.037 0.00 0.00 0.00 3.41
1899 1909 6.873605 CGGCAATAAATGTGATAGATAGTCCA 59.126 38.462 0.00 0.00 0.00 4.02
1900 1910 7.097192 TCGGCAATAAATGTGATAGATAGTCC 58.903 38.462 0.00 0.00 0.00 3.85
1901 1911 8.709386 ATCGGCAATAAATGTGATAGATAGTC 57.291 34.615 0.00 0.00 0.00 2.59
1940 1959 8.818057 GCAGTTTACGTCTAGTATCAAATTCAT 58.182 33.333 0.00 0.00 34.88 2.57
1941 1960 7.008901 CGCAGTTTACGTCTAGTATCAAATTCA 59.991 37.037 0.00 0.00 34.88 2.57
1962 1981 7.849804 ATTCTTACAAGTAAATGATCGCAGT 57.150 32.000 0.00 0.00 0.00 4.40
1985 2004 6.232692 CCCATCACAACCAAATCAGAAAAAT 58.767 36.000 0.00 0.00 0.00 1.82
1986 2005 5.454471 CCCCATCACAACCAAATCAGAAAAA 60.454 40.000 0.00 0.00 0.00 1.94
2035 2056 0.448990 CGATCGACTTCACGTACCCA 59.551 55.000 10.26 0.00 34.70 4.51
2057 2078 2.729479 CGGTCAGCAGATGCCTCCT 61.729 63.158 0.14 0.00 43.38 3.69
2059 2080 1.520342 GACGGTCAGCAGATGCCTC 60.520 63.158 2.62 0.00 43.38 4.70
2060 2081 2.581354 GACGGTCAGCAGATGCCT 59.419 61.111 2.62 0.00 43.38 4.75
2083 2104 3.846430 GGGCCGTAGAACCCCTCG 61.846 72.222 0.00 0.00 37.68 4.63
2101 2122 3.358076 CTTCTCCGGTGGGCTCGTC 62.358 68.421 0.00 0.00 0.00 4.20
2110 2131 2.992114 ACGCTGAGCTTCTCCGGT 60.992 61.111 1.78 0.00 0.00 5.28
2122 2143 4.776322 TGCCCCGGATTCACGCTG 62.776 66.667 0.73 0.00 0.00 5.18
2188 2209 1.511305 GGAGGCGAAGTCGATGTCA 59.489 57.895 4.59 0.00 43.02 3.58
2321 2353 3.181465 ACGAACTTGAGCTTCTCTTCCAA 60.181 43.478 0.00 0.00 0.00 3.53
2602 2634 2.031919 TTCTGCATGGACGGCGTT 59.968 55.556 16.19 0.00 0.00 4.84
2670 2702 0.692419 GAGGATCCTCTTGGCCTCCA 60.692 60.000 31.11 0.00 36.93 3.86
2877 2912 1.133790 GTCAAGGGCACGTACGAGTAT 59.866 52.381 24.41 0.00 0.00 2.12
3059 3094 3.711937 TCACAAGCACAGTGAGCAT 57.288 47.368 15.15 0.00 40.80 3.79
3066 3101 2.174363 TCACTGGATCACAAGCACAG 57.826 50.000 0.00 0.00 35.40 3.66
3107 3150 7.492344 ACTGAAAAGTGACAAATGGATGAAAAC 59.508 33.333 0.00 0.00 0.00 2.43
3123 3166 4.748102 TGGCGAGTTACTTACTGAAAAGTG 59.252 41.667 9.39 0.00 39.95 3.16
3156 3199 8.475639 AGTTCATCATATTTAACTACTCACGGT 58.524 33.333 0.00 0.00 30.62 4.83
3208 3265 2.286772 GGTCACAACAGCGACGATTTTT 60.287 45.455 0.00 0.00 32.74 1.94
3209 3266 1.263217 GGTCACAACAGCGACGATTTT 59.737 47.619 0.00 0.00 32.74 1.82
3210 3267 0.865769 GGTCACAACAGCGACGATTT 59.134 50.000 0.00 0.00 32.74 2.17
3211 3268 0.249699 TGGTCACAACAGCGACGATT 60.250 50.000 0.00 0.00 32.74 3.34
3212 3269 0.944311 GTGGTCACAACAGCGACGAT 60.944 55.000 0.00 0.00 32.74 3.73
3213 3270 1.590525 GTGGTCACAACAGCGACGA 60.591 57.895 0.00 0.00 32.74 4.20
3214 3271 1.425267 TTGTGGTCACAACAGCGACG 61.425 55.000 11.95 0.00 45.42 5.12
3215 3272 2.389386 TTGTGGTCACAACAGCGAC 58.611 52.632 11.95 0.00 45.42 5.19
3216 3273 4.943822 TTGTGGTCACAACAGCGA 57.056 50.000 11.95 0.00 45.42 4.93
3223 3280 1.088306 GACGGTTGTTTGTGGTCACA 58.912 50.000 0.00 0.00 39.98 3.58
3224 3281 0.027063 CGACGGTTGTTTGTGGTCAC 59.973 55.000 0.00 0.00 0.00 3.67
3225 3282 1.090625 CCGACGGTTGTTTGTGGTCA 61.091 55.000 5.48 0.00 0.00 4.02
3235 3292 1.433053 TTGTGTTGCTCCGACGGTTG 61.433 55.000 14.79 9.40 0.00 3.77
3240 3297 0.370273 CGCTATTGTGTTGCTCCGAC 59.630 55.000 0.00 0.00 0.00 4.79
3241 3298 0.245266 TCGCTATTGTGTTGCTCCGA 59.755 50.000 0.00 0.00 0.00 4.55
3245 3304 3.251479 TGATCTCGCTATTGTGTTGCT 57.749 42.857 0.00 0.00 0.00 3.91
3339 3402 3.827898 CTCACTCGCCCTCGTCCC 61.828 72.222 0.00 0.00 36.96 4.46
3367 3431 4.891756 CCATCACATTGCTATTCTTTCCCT 59.108 41.667 0.00 0.00 0.00 4.20
3398 3462 1.220750 TCTAGGTCATCCCCCTTCCTC 59.779 57.143 0.00 0.00 33.35 3.71
3399 3463 1.221781 CTCTAGGTCATCCCCCTTCCT 59.778 57.143 0.00 0.00 33.35 3.36
3400 3464 1.723288 CTCTAGGTCATCCCCCTTCC 58.277 60.000 0.00 0.00 33.35 3.46
3401 3465 1.052617 GCTCTAGGTCATCCCCCTTC 58.947 60.000 0.00 0.00 33.35 3.46
3402 3466 0.343372 TGCTCTAGGTCATCCCCCTT 59.657 55.000 0.00 0.00 33.35 3.95
3403 3467 0.105246 CTGCTCTAGGTCATCCCCCT 60.105 60.000 0.00 0.00 36.04 4.79
3404 3468 1.124477 CCTGCTCTAGGTCATCCCCC 61.124 65.000 0.00 0.00 42.00 5.40
3405 3469 2.446512 CCTGCTCTAGGTCATCCCC 58.553 63.158 0.00 0.00 42.00 4.81
3414 3478 1.051556 GGTCCCCCTTCCTGCTCTAG 61.052 65.000 0.00 0.00 0.00 2.43
3415 3479 1.003051 GGTCCCCCTTCCTGCTCTA 59.997 63.158 0.00 0.00 0.00 2.43
3416 3480 2.285743 GGTCCCCCTTCCTGCTCT 60.286 66.667 0.00 0.00 0.00 4.09
3417 3481 1.988982 GATGGTCCCCCTTCCTGCTC 61.989 65.000 0.00 0.00 0.00 4.26
3418 3482 2.003548 GATGGTCCCCCTTCCTGCT 61.004 63.158 0.00 0.00 0.00 4.24
3419 3483 1.575447 AAGATGGTCCCCCTTCCTGC 61.575 60.000 0.00 0.00 35.90 4.85
3440 3504 0.796312 CCTCGTGAATTCGGGTGTTG 59.204 55.000 0.04 0.00 0.00 3.33
3442 3506 0.682852 TTCCTCGTGAATTCGGGTGT 59.317 50.000 0.04 0.00 0.00 4.16
3446 3510 3.123621 CACTTCTTTCCTCGTGAATTCGG 59.876 47.826 0.04 0.00 31.67 4.30
3449 3513 4.086706 ACCACTTCTTTCCTCGTGAATT 57.913 40.909 0.00 0.00 31.67 2.17
3452 3516 2.030540 CGTACCACTTCTTTCCTCGTGA 60.031 50.000 0.00 0.00 0.00 4.35
3515 3580 7.275888 ACACTTATTGCAAATTTGAGAGACA 57.724 32.000 22.31 6.84 0.00 3.41
3528 3593 6.747414 AGGACCAGATATACACTTATTGCA 57.253 37.500 0.00 0.00 0.00 4.08
3557 3622 3.071479 CACGGGCTCTTTTGCTAGTAAA 58.929 45.455 1.42 1.42 0.00 2.01
3560 3625 0.955919 GCACGGGCTCTTTTGCTAGT 60.956 55.000 0.00 0.00 36.96 2.57
3561 3626 1.796796 GCACGGGCTCTTTTGCTAG 59.203 57.895 0.00 0.00 36.96 3.42
3562 3627 2.032634 CGCACGGGCTCTTTTGCTA 61.033 57.895 8.62 0.00 38.10 3.49
3563 3628 3.357079 CGCACGGGCTCTTTTGCT 61.357 61.111 8.62 0.00 38.10 3.91
3564 3629 3.194272 AACGCACGGGCTCTTTTGC 62.194 57.895 8.62 0.00 38.10 3.68
3565 3630 1.370414 CAACGCACGGGCTCTTTTG 60.370 57.895 8.62 1.62 38.10 2.44
3566 3631 3.030652 CAACGCACGGGCTCTTTT 58.969 55.556 8.62 0.00 38.10 2.27
3567 3632 3.660111 GCAACGCACGGGCTCTTT 61.660 61.111 8.62 0.00 38.10 2.52
3568 3633 4.927782 TGCAACGCACGGGCTCTT 62.928 61.111 8.62 0.00 38.10 2.85
3569 3634 4.927782 TTGCAACGCACGGGCTCT 62.928 61.111 8.62 0.00 38.71 4.09
3570 3635 3.737172 ATTGCAACGCACGGGCTC 61.737 61.111 8.62 0.00 38.71 4.70
3571 3636 4.041917 CATTGCAACGCACGGGCT 62.042 61.111 8.62 0.00 38.71 5.19
3572 3637 3.550339 TTCATTGCAACGCACGGGC 62.550 57.895 0.00 0.00 38.71 6.13
3573 3638 0.596083 TTTTCATTGCAACGCACGGG 60.596 50.000 0.00 0.00 38.71 5.28
3574 3639 1.203928 TTTTTCATTGCAACGCACGG 58.796 45.000 0.00 0.00 38.71 4.94
3594 3659 5.766174 TGGGTTAAGAGCGTCTGTTATTTTT 59.234 36.000 0.00 0.00 0.00 1.94
3595 3660 5.310451 TGGGTTAAGAGCGTCTGTTATTTT 58.690 37.500 0.00 0.00 0.00 1.82
3596 3661 4.901868 TGGGTTAAGAGCGTCTGTTATTT 58.098 39.130 0.00 0.00 0.00 1.40
3597 3662 4.546829 TGGGTTAAGAGCGTCTGTTATT 57.453 40.909 0.00 0.00 0.00 1.40
3598 3663 4.546829 TTGGGTTAAGAGCGTCTGTTAT 57.453 40.909 0.00 0.00 0.00 1.89
3599 3664 4.546829 ATTGGGTTAAGAGCGTCTGTTA 57.453 40.909 0.00 0.00 0.00 2.41
3600 3665 2.922740 TTGGGTTAAGAGCGTCTGTT 57.077 45.000 0.00 0.00 0.00 3.16
3601 3666 4.251268 GTTATTGGGTTAAGAGCGTCTGT 58.749 43.478 0.00 0.00 0.00 3.41
3602 3667 4.250464 TGTTATTGGGTTAAGAGCGTCTG 58.750 43.478 0.00 0.00 0.00 3.51
3603 3668 4.546829 TGTTATTGGGTTAAGAGCGTCT 57.453 40.909 0.00 0.00 0.00 4.18
3604 3669 5.813080 ATTGTTATTGGGTTAAGAGCGTC 57.187 39.130 0.00 0.00 0.00 5.19
3605 3670 6.882678 AGTAATTGTTATTGGGTTAAGAGCGT 59.117 34.615 0.00 0.00 0.00 5.07
3606 3671 7.065324 TGAGTAATTGTTATTGGGTTAAGAGCG 59.935 37.037 0.00 0.00 0.00 5.03
3607 3672 8.276252 TGAGTAATTGTTATTGGGTTAAGAGC 57.724 34.615 0.00 0.00 0.00 4.09
3611 3676 9.016438 GGTCTTGAGTAATTGTTATTGGGTTAA 57.984 33.333 0.00 0.00 0.00 2.01
3612 3677 7.612633 GGGTCTTGAGTAATTGTTATTGGGTTA 59.387 37.037 0.00 0.00 0.00 2.85
3613 3678 6.436218 GGGTCTTGAGTAATTGTTATTGGGTT 59.564 38.462 0.00 0.00 0.00 4.11
3614 3679 5.949952 GGGTCTTGAGTAATTGTTATTGGGT 59.050 40.000 0.00 0.00 0.00 4.51
3615 3680 6.187682 AGGGTCTTGAGTAATTGTTATTGGG 58.812 40.000 0.00 0.00 0.00 4.12
3616 3681 8.801882 TTAGGGTCTTGAGTAATTGTTATTGG 57.198 34.615 0.00 0.00 0.00 3.16
3618 3683 9.975218 ACATTAGGGTCTTGAGTAATTGTTATT 57.025 29.630 0.00 0.00 0.00 1.40
3619 3684 9.396022 CACATTAGGGTCTTGAGTAATTGTTAT 57.604 33.333 0.00 0.00 0.00 1.89
3620 3685 8.380099 ACACATTAGGGTCTTGAGTAATTGTTA 58.620 33.333 0.00 0.00 0.00 2.41
3621 3686 7.231467 ACACATTAGGGTCTTGAGTAATTGTT 58.769 34.615 0.00 0.00 0.00 2.83
3622 3687 6.779860 ACACATTAGGGTCTTGAGTAATTGT 58.220 36.000 0.00 0.00 0.00 2.71
3623 3688 7.390440 TGAACACATTAGGGTCTTGAGTAATTG 59.610 37.037 0.00 0.00 0.00 2.32
3624 3689 7.390718 GTGAACACATTAGGGTCTTGAGTAATT 59.609 37.037 0.00 0.00 0.00 1.40
3625 3690 6.879458 GTGAACACATTAGGGTCTTGAGTAAT 59.121 38.462 0.00 0.00 0.00 1.89
3626 3691 6.183361 TGTGAACACATTAGGGTCTTGAGTAA 60.183 38.462 3.39 0.00 36.21 2.24
3627 3692 5.305902 TGTGAACACATTAGGGTCTTGAGTA 59.694 40.000 3.39 0.00 36.21 2.59
3628 3693 4.102524 TGTGAACACATTAGGGTCTTGAGT 59.897 41.667 3.39 0.00 36.21 3.41
3629 3694 4.641396 TGTGAACACATTAGGGTCTTGAG 58.359 43.478 3.39 0.00 36.21 3.02
3630 3695 4.698201 TGTGAACACATTAGGGTCTTGA 57.302 40.909 3.39 0.00 36.21 3.02
3642 3707 7.858382 CGTGTAAAAATAAAGGATGTGAACACA 59.142 33.333 10.04 10.04 46.44 3.72
3643 3708 7.325097 CCGTGTAAAAATAAAGGATGTGAACAC 59.675 37.037 0.00 0.00 0.00 3.32
3644 3709 7.364200 CCGTGTAAAAATAAAGGATGTGAACA 58.636 34.615 0.00 0.00 0.00 3.18
3645 3710 6.307077 GCCGTGTAAAAATAAAGGATGTGAAC 59.693 38.462 0.00 0.00 0.00 3.18
3646 3711 6.016192 TGCCGTGTAAAAATAAAGGATGTGAA 60.016 34.615 0.00 0.00 0.00 3.18
3647 3712 5.473846 TGCCGTGTAAAAATAAAGGATGTGA 59.526 36.000 0.00 0.00 0.00 3.58
3648 3713 5.704888 TGCCGTGTAAAAATAAAGGATGTG 58.295 37.500 0.00 0.00 0.00 3.21
3649 3714 5.968528 TGCCGTGTAAAAATAAAGGATGT 57.031 34.783 0.00 0.00 0.00 3.06
3650 3715 6.472163 GTGATGCCGTGTAAAAATAAAGGATG 59.528 38.462 0.00 0.00 0.00 3.51
3651 3716 6.151985 TGTGATGCCGTGTAAAAATAAAGGAT 59.848 34.615 0.00 0.00 0.00 3.24
3652 3717 5.473846 TGTGATGCCGTGTAAAAATAAAGGA 59.526 36.000 0.00 0.00 0.00 3.36
3653 3718 5.704888 TGTGATGCCGTGTAAAAATAAAGG 58.295 37.500 0.00 0.00 0.00 3.11
3654 3719 7.810766 AATGTGATGCCGTGTAAAAATAAAG 57.189 32.000 0.00 0.00 0.00 1.85
3655 3720 7.653713 ACAAATGTGATGCCGTGTAAAAATAAA 59.346 29.630 0.00 0.00 0.00 1.40
3656 3721 7.148641 ACAAATGTGATGCCGTGTAAAAATAA 58.851 30.769 0.00 0.00 0.00 1.40
3657 3722 6.682746 ACAAATGTGATGCCGTGTAAAAATA 58.317 32.000 0.00 0.00 0.00 1.40
3658 3723 5.537188 ACAAATGTGATGCCGTGTAAAAAT 58.463 33.333 0.00 0.00 0.00 1.82
3659 3724 4.938080 ACAAATGTGATGCCGTGTAAAAA 58.062 34.783 0.00 0.00 0.00 1.94
3660 3725 4.576216 ACAAATGTGATGCCGTGTAAAA 57.424 36.364 0.00 0.00 0.00 1.52
3674 3739 2.293122 CCACCATCGACAACACAAATGT 59.707 45.455 0.00 0.00 42.46 2.71
3675 3740 2.293122 ACCACCATCGACAACACAAATG 59.707 45.455 0.00 0.00 0.00 2.32
3676 3741 2.552315 GACCACCATCGACAACACAAAT 59.448 45.455 0.00 0.00 0.00 2.32
3677 3742 1.944024 GACCACCATCGACAACACAAA 59.056 47.619 0.00 0.00 0.00 2.83
3678 3743 1.140052 AGACCACCATCGACAACACAA 59.860 47.619 0.00 0.00 0.00 3.33
3679 3744 0.756294 AGACCACCATCGACAACACA 59.244 50.000 0.00 0.00 0.00 3.72
3680 3745 1.270094 TGAGACCACCATCGACAACAC 60.270 52.381 0.00 0.00 0.00 3.32
3681 3746 1.000843 CTGAGACCACCATCGACAACA 59.999 52.381 0.00 0.00 0.00 3.33
3682 3747 1.000955 ACTGAGACCACCATCGACAAC 59.999 52.381 0.00 0.00 0.00 3.32
3683 3748 1.000843 CACTGAGACCACCATCGACAA 59.999 52.381 0.00 0.00 0.00 3.18
3684 3749 0.603065 CACTGAGACCACCATCGACA 59.397 55.000 0.00 0.00 0.00 4.35
3685 3750 0.737715 GCACTGAGACCACCATCGAC 60.738 60.000 0.00 0.00 0.00 4.20
3686 3751 0.900182 AGCACTGAGACCACCATCGA 60.900 55.000 0.00 0.00 0.00 3.59
3687 3752 0.459237 GAGCACTGAGACCACCATCG 60.459 60.000 0.00 0.00 0.00 3.84
3688 3753 0.610174 TGAGCACTGAGACCACCATC 59.390 55.000 0.00 0.00 0.00 3.51
3689 3754 2.764007 TGAGCACTGAGACCACCAT 58.236 52.632 0.00 0.00 0.00 3.55
3690 3755 4.293610 TGAGCACTGAGACCACCA 57.706 55.556 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.