Multiple sequence alignment - TraesCS3B01G306500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G306500 chr3B 100.000 5695 0 0 1 5695 492566547 492572241 0.000000e+00 10517.0
1 TraesCS3B01G306500 chr3B 92.063 63 4 1 1903 1965 586737853 586737914 2.830000e-13 87.9
2 TraesCS3B01G306500 chr3B 78.519 135 19 6 1839 1964 528176323 528176190 4.730000e-11 80.5
3 TraesCS3B01G306500 chr3B 91.667 48 2 2 1797 1843 737923122 737923168 1.320000e-06 65.8
4 TraesCS3B01G306500 chr3B 92.857 42 2 1 1801 1841 160368626 160368585 6.160000e-05 60.2
5 TraesCS3B01G306500 chr3D 89.478 3412 219 81 658 3984 378024005 378027361 0.000000e+00 4183.0
6 TraesCS3B01G306500 chr3D 87.097 1147 90 21 3983 5091 378027394 378028520 0.000000e+00 1245.0
7 TraesCS3B01G306500 chr3D 84.917 663 88 12 1 656 58425165 58425822 0.000000e+00 660.0
8 TraesCS3B01G306500 chr3D 84.708 667 83 19 1 656 86235914 86236572 0.000000e+00 649.0
9 TraesCS3B01G306500 chr3D 85.714 105 10 3 5095 5195 26440840 26440943 7.800000e-19 106.0
10 TraesCS3B01G306500 chr3A 90.613 2024 120 35 810 2797 502097195 502099184 0.000000e+00 2621.0
11 TraesCS3B01G306500 chr3A 87.915 1175 90 29 2847 3984 502099187 502100346 0.000000e+00 1336.0
12 TraesCS3B01G306500 chr3A 86.591 1141 97 23 3983 5091 502100379 502101495 0.000000e+00 1208.0
13 TraesCS3B01G306500 chr3A 80.749 187 23 9 1576 1758 46168417 46168240 3.580000e-27 134.0
14 TraesCS3B01G306500 chr3A 84.337 83 12 1 1576 1658 713682715 713682796 4.730000e-11 80.5
15 TraesCS3B01G306500 chr3A 95.556 45 2 0 1839 1883 72407154 72407110 7.920000e-09 73.1
16 TraesCS3B01G306500 chr3A 100.000 28 0 0 5091 5118 671764201 671764174 1.000000e-02 52.8
17 TraesCS3B01G306500 chr2D 85.954 655 84 8 1 650 388000212 388000863 0.000000e+00 693.0
18 TraesCS3B01G306500 chr2D 84.894 662 90 10 1 656 635113519 635112862 0.000000e+00 660.0
19 TraesCS3B01G306500 chr2D 80.449 624 103 14 5089 5695 547154330 547154951 5.200000e-125 459.0
20 TraesCS3B01G306500 chr2D 88.014 292 31 4 5216 5505 511918777 511919066 5.460000e-90 342.0
21 TraesCS3B01G306500 chr2D 97.778 45 1 0 1839 1883 602511374 602511418 1.700000e-10 78.7
22 TraesCS3B01G306500 chr5D 85.392 664 83 14 1 656 106517873 106518530 0.000000e+00 676.0
23 TraesCS3B01G306500 chr5D 79.092 617 105 12 5100 5695 356334214 356334827 2.470000e-108 403.0
24 TraesCS3B01G306500 chr5D 95.455 44 2 0 1839 1882 283009705 283009748 2.850000e-08 71.3
25 TraesCS3B01G306500 chr5D 95.000 40 0 2 1803 1841 45127485 45127523 1.710000e-05 62.1
26 TraesCS3B01G306500 chr6D 84.880 668 88 13 1 660 436524197 436523535 0.000000e+00 662.0
27 TraesCS3B01G306500 chr6D 84.441 662 93 10 1 656 35516037 35516694 1.340000e-180 643.0
28 TraesCS3B01G306500 chr7D 84.558 667 85 17 1 656 574843944 574844603 0.000000e+00 645.0
29 TraesCS3B01G306500 chr7D 79.562 137 17 10 1576 1710 541964147 541964020 2.830000e-13 87.9
30 TraesCS3B01G306500 chr7D 78.832 137 15 11 1839 1962 611252863 611252998 4.730000e-11 80.5
31 TraesCS3B01G306500 chr1D 84.328 670 91 14 1 662 363512212 363511549 1.340000e-180 643.0
32 TraesCS3B01G306500 chr1D 85.572 201 19 6 1540 1738 295971258 295971066 9.680000e-48 202.0
33 TraesCS3B01G306500 chr4A 82.085 614 88 15 5097 5694 685343292 685343899 6.590000e-139 505.0
34 TraesCS3B01G306500 chr4B 81.038 559 84 9 5097 5640 605519634 605520185 5.270000e-115 425.0
35 TraesCS3B01G306500 chr7A 79.677 620 98 17 5093 5694 201534615 201535224 6.820000e-114 422.0
36 TraesCS3B01G306500 chr7A 82.222 135 14 7 1839 1964 579808507 579808374 2.170000e-19 108.0
37 TraesCS3B01G306500 chr7B 82.892 415 58 7 5235 5638 337574726 337575138 1.510000e-95 361.0
38 TraesCS3B01G306500 chr7B 88.060 67 6 2 5093 5158 337633490 337633555 1.700000e-10 78.7
39 TraesCS3B01G306500 chr2B 91.339 254 22 0 5252 5505 601177844 601178097 1.170000e-91 348.0
40 TraesCS3B01G306500 chr2B 84.000 125 16 2 5093 5213 1366499 1366375 3.610000e-22 117.0
41 TraesCS3B01G306500 chr2B 80.822 146 18 5 1576 1717 775168200 775168061 7.800000e-19 106.0
42 TraesCS3B01G306500 chr2B 77.005 187 32 6 5139 5319 794907086 794906905 4.700000e-16 97.1
43 TraesCS3B01G306500 chr2A 88.104 269 31 1 5238 5505 640812409 640812141 9.210000e-83 318.0
44 TraesCS3B01G306500 chr2A 79.545 132 16 6 1839 1961 549290407 549290278 3.660000e-12 84.2
45 TraesCS3B01G306500 chr5A 75.714 350 72 6 5358 5695 143330121 143330469 4.570000e-36 163.0
46 TraesCS3B01G306500 chr5A 84.211 76 9 3 1576 1650 39735140 39735213 2.850000e-08 71.3
47 TraesCS3B01G306500 chr5B 89.423 104 11 0 1285 1388 369904606 369904503 1.290000e-26 132.0
48 TraesCS3B01G306500 chr6B 84.416 77 9 3 1576 1651 655254053 655253979 7.920000e-09 73.1
49 TraesCS3B01G306500 chr1A 90.909 44 1 1 1801 1841 452003031 452003074 7.970000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G306500 chr3B 492566547 492572241 5694 False 10517.000000 10517 100.0000 1 5695 1 chr3B.!!$F1 5694
1 TraesCS3B01G306500 chr3D 378024005 378028520 4515 False 2714.000000 4183 88.2875 658 5091 2 chr3D.!!$F4 4433
2 TraesCS3B01G306500 chr3D 58425165 58425822 657 False 660.000000 660 84.9170 1 656 1 chr3D.!!$F2 655
3 TraesCS3B01G306500 chr3D 86235914 86236572 658 False 649.000000 649 84.7080 1 656 1 chr3D.!!$F3 655
4 TraesCS3B01G306500 chr3A 502097195 502101495 4300 False 1721.666667 2621 88.3730 810 5091 3 chr3A.!!$F2 4281
5 TraesCS3B01G306500 chr2D 388000212 388000863 651 False 693.000000 693 85.9540 1 650 1 chr2D.!!$F1 649
6 TraesCS3B01G306500 chr2D 635112862 635113519 657 True 660.000000 660 84.8940 1 656 1 chr2D.!!$R1 655
7 TraesCS3B01G306500 chr2D 547154330 547154951 621 False 459.000000 459 80.4490 5089 5695 1 chr2D.!!$F3 606
8 TraesCS3B01G306500 chr5D 106517873 106518530 657 False 676.000000 676 85.3920 1 656 1 chr5D.!!$F2 655
9 TraesCS3B01G306500 chr5D 356334214 356334827 613 False 403.000000 403 79.0920 5100 5695 1 chr5D.!!$F4 595
10 TraesCS3B01G306500 chr6D 436523535 436524197 662 True 662.000000 662 84.8800 1 660 1 chr6D.!!$R1 659
11 TraesCS3B01G306500 chr6D 35516037 35516694 657 False 643.000000 643 84.4410 1 656 1 chr6D.!!$F1 655
12 TraesCS3B01G306500 chr7D 574843944 574844603 659 False 645.000000 645 84.5580 1 656 1 chr7D.!!$F1 655
13 TraesCS3B01G306500 chr1D 363511549 363512212 663 True 643.000000 643 84.3280 1 662 1 chr1D.!!$R2 661
14 TraesCS3B01G306500 chr4A 685343292 685343899 607 False 505.000000 505 82.0850 5097 5694 1 chr4A.!!$F1 597
15 TraesCS3B01G306500 chr4B 605519634 605520185 551 False 425.000000 425 81.0380 5097 5640 1 chr4B.!!$F1 543
16 TraesCS3B01G306500 chr7A 201534615 201535224 609 False 422.000000 422 79.6770 5093 5694 1 chr7A.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 765 0.252197 GGGTATTGCCACCGAACTCT 59.748 55.0 0.00 0.0 39.69 3.24 F
1395 1425 0.106149 AGACTTTCGCCTCCGTGTTT 59.894 50.0 0.00 0.0 35.54 2.83 F
1765 1798 1.102154 TGCAATTGCCATACTTCCCG 58.898 50.0 26.94 0.0 41.18 5.14 F
2439 2498 2.559698 TTCGGAAAGCAACATGGAGA 57.440 45.0 0.00 0.0 0.00 3.71 F
4427 4591 0.475906 ATCCTGCTGATAGGCCCAAC 59.524 55.0 0.00 0.0 37.76 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1556 1586 0.545787 TCCCCTCCCAAGCGAAAGTA 60.546 55.000 0.00 0.00 0.00 2.24 R
2484 2543 0.859232 CCCACACTTTGTTCTCGTCG 59.141 55.000 0.00 0.00 0.00 5.12 R
2573 2634 1.479757 GGGAAGTACCAACTTGGGCAA 60.480 52.381 12.62 0.00 46.09 4.52 R
4436 4600 1.398390 GCAGACAACCGATCAATGACC 59.602 52.381 0.00 0.00 0.00 4.02 R
5509 5689 0.031449 ACCACGGTGCAAAATTTCCG 59.969 50.000 12.95 12.95 46.98 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.633830 AAGTCATGTTACAATCTTGCTGG 57.366 39.130 0.00 0.00 0.00 4.85
41 42 6.658816 TGTTACAATCTTGCTGGTATGTTCAT 59.341 34.615 0.00 0.00 0.00 2.57
55 56 8.740123 TGGTATGTTCATTAAATCATTACCGT 57.260 30.769 0.00 0.00 0.00 4.83
80 81 0.969149 ATCTTCGAGAGGTGTGTGCA 59.031 50.000 0.00 0.00 0.00 4.57
85 86 0.738762 CGAGAGGTGTGTGCATGGAG 60.739 60.000 0.00 0.00 0.00 3.86
93 94 2.104170 TGTGTGCATGGAGTCGGTATA 58.896 47.619 0.00 0.00 0.00 1.47
143 144 3.551846 GGGGAGAAACTTCACAAACTCA 58.448 45.455 0.00 0.00 0.00 3.41
145 146 5.313712 GGGGAGAAACTTCACAAACTCATA 58.686 41.667 0.00 0.00 0.00 2.15
149 150 7.355778 GGAGAAACTTCACAAACTCATAGTTG 58.644 38.462 0.00 0.00 38.66 3.16
168 169 6.927294 AGTTGAAATCTTAATCCCGATGAC 57.073 37.500 0.00 0.00 0.00 3.06
204 205 5.241403 TGATGGTTGAGTGGATTGTACTT 57.759 39.130 0.00 0.00 0.00 2.24
258 260 0.462789 ACACGAGGTTTTGACGAGGT 59.537 50.000 0.00 0.00 0.00 3.85
286 288 6.320944 TCGTGCAATACAACAACGTATACTA 58.679 36.000 0.56 0.00 31.76 1.82
289 291 6.844279 GTGCAATACAACAACGTATACTATGC 59.156 38.462 0.56 0.00 34.59 3.14
293 295 4.178540 ACAACAACGTATACTATGCGCTT 58.821 39.130 9.73 4.59 42.26 4.68
378 382 2.247372 CCAAGGGGGAGTATTGGGAAAT 59.753 50.000 0.00 0.00 39.87 2.17
381 385 1.772453 GGGGGAGTATTGGGAAATCGA 59.228 52.381 0.00 0.00 0.00 3.59
389 393 4.986467 GGGAAATCGAGCCCACAT 57.014 55.556 14.10 0.00 44.07 3.21
390 394 3.191182 GGGAAATCGAGCCCACATT 57.809 52.632 14.10 0.00 44.07 2.71
405 410 3.329889 ATTGTGGGAGCCAGCGGA 61.330 61.111 0.00 0.00 32.34 5.54
406 411 3.335356 ATTGTGGGAGCCAGCGGAG 62.335 63.158 0.00 0.00 32.34 4.63
450 459 1.336755 CCCTCCCGTTTTCACACTTTG 59.663 52.381 0.00 0.00 0.00 2.77
504 514 9.937876 CCCCTACACCTATATAAATAGATGAGA 57.062 37.037 0.00 0.00 37.84 3.27
522 532 7.108194 AGATGAGAAGCAATCATTGTAACAGA 58.892 34.615 0.00 0.00 37.52 3.41
527 538 6.541641 AGAAGCAATCATTGTAACAGAGATCC 59.458 38.462 0.00 0.00 0.00 3.36
528 539 5.748402 AGCAATCATTGTAACAGAGATCCA 58.252 37.500 0.00 0.00 0.00 3.41
530 541 6.832384 AGCAATCATTGTAACAGAGATCCATT 59.168 34.615 0.00 0.00 0.00 3.16
589 603 1.774639 TCTACTTTGCGTGTTCGACC 58.225 50.000 0.00 0.00 39.71 4.79
594 608 1.063469 CTTTGCGTGTTCGACCACTTT 59.937 47.619 11.53 0.00 39.71 2.66
613 627 2.023461 CCTACGACGCTCGCTCTG 59.977 66.667 0.00 0.00 45.12 3.35
615 629 1.644372 CTACGACGCTCGCTCTGAT 59.356 57.895 0.00 0.00 45.12 2.90
620 634 2.103143 CGCTCGCTCTGATTCCGT 59.897 61.111 0.00 0.00 0.00 4.69
628 642 2.416836 CGCTCTGATTCCGTAACCTTGA 60.417 50.000 0.00 0.00 0.00 3.02
635 649 1.269012 TCCGTAACCTTGAACCGGAT 58.731 50.000 9.46 0.00 42.33 4.18
639 653 2.671914 CGTAACCTTGAACCGGATTCGA 60.672 50.000 9.46 7.49 40.56 3.71
656 670 1.860078 GACGGTGAAGTTGCGGAAG 59.140 57.895 0.00 0.00 0.00 3.46
665 679 2.341846 AGTTGCGGAAGAGAACCAAA 57.658 45.000 0.00 0.00 0.00 3.28
666 680 2.863809 AGTTGCGGAAGAGAACCAAAT 58.136 42.857 0.00 0.00 0.00 2.32
669 683 4.825085 AGTTGCGGAAGAGAACCAAATTTA 59.175 37.500 0.00 0.00 0.00 1.40
675 689 5.278266 CGGAAGAGAACCAAATTTACAAGCA 60.278 40.000 0.00 0.00 0.00 3.91
677 691 6.587608 GGAAGAGAACCAAATTTACAAGCATG 59.412 38.462 0.00 0.00 0.00 4.06
680 694 4.592778 AGAACCAAATTTACAAGCATGGGT 59.407 37.500 0.00 0.00 32.21 4.51
695 709 2.634639 TGGGTAAGGCTCTACTTCCA 57.365 50.000 0.00 0.00 32.02 3.53
696 710 2.467880 TGGGTAAGGCTCTACTTCCAG 58.532 52.381 0.00 0.00 32.02 3.86
701 715 0.325765 AGGCTCTACTTCCAGGGGAC 60.326 60.000 0.00 0.00 0.00 4.46
730 745 4.215742 CGCTCAATCCGCGGGGTA 62.216 66.667 27.83 6.34 46.32 3.69
731 746 2.426023 GCTCAATCCGCGGGGTAT 59.574 61.111 27.83 8.97 33.83 2.73
732 747 1.227853 GCTCAATCCGCGGGGTATT 60.228 57.895 27.83 15.37 33.83 1.89
733 748 1.507141 GCTCAATCCGCGGGGTATTG 61.507 60.000 27.83 25.91 34.68 1.90
734 749 1.507141 CTCAATCCGCGGGGTATTGC 61.507 60.000 27.83 0.00 34.01 3.56
740 760 4.476752 GCGGGGTATTGCCACCGA 62.477 66.667 19.52 0.00 46.93 4.69
745 765 0.252197 GGGTATTGCCACCGAACTCT 59.748 55.000 0.00 0.00 39.69 3.24
746 766 1.339727 GGGTATTGCCACCGAACTCTT 60.340 52.381 0.00 0.00 39.69 2.85
764 784 0.322322 TTCGCCACCGTTTCATACCT 59.678 50.000 0.00 0.00 35.54 3.08
769 789 2.356135 CCACCGTTTCATACCTCAAGG 58.644 52.381 0.00 0.00 42.17 3.61
773 793 1.339631 CGTTTCATACCTCAAGGGGCA 60.340 52.381 0.29 0.00 40.27 5.36
774 794 2.369394 GTTTCATACCTCAAGGGGCAG 58.631 52.381 0.29 0.00 40.27 4.85
778 798 2.771943 TCATACCTCAAGGGGCAGTTAG 59.228 50.000 0.29 0.00 40.27 2.34
780 800 1.446016 ACCTCAAGGGGCAGTTAGTT 58.554 50.000 0.29 0.00 40.27 2.24
781 801 1.780919 ACCTCAAGGGGCAGTTAGTTT 59.219 47.619 0.29 0.00 40.27 2.66
783 803 3.230976 CCTCAAGGGGCAGTTAGTTTTT 58.769 45.455 0.00 0.00 0.00 1.94
907 932 1.090052 CAAACCCCCTCGCTCGATTC 61.090 60.000 0.00 0.00 0.00 2.52
908 933 1.265454 AAACCCCCTCGCTCGATTCT 61.265 55.000 0.00 0.00 0.00 2.40
941 971 0.896479 GGACCCTCCTCGGCTCTATC 60.896 65.000 0.00 0.00 32.53 2.08
1176 1206 3.134623 TCGCCAGTTTCCAGATGATGTAT 59.865 43.478 0.00 0.00 0.00 2.29
1395 1425 0.106149 AGACTTTCGCCTCCGTGTTT 59.894 50.000 0.00 0.00 35.54 2.83
1428 1458 7.394016 TGTTCTGCTTTCTTGATAACCTCATA 58.606 34.615 0.00 0.00 32.72 2.15
1430 1460 8.897752 GTTCTGCTTTCTTGATAACCTCATAAT 58.102 33.333 0.00 0.00 32.72 1.28
1496 1526 6.598525 TCATTAGAGCATGTTTTTGTACGTG 58.401 36.000 0.00 0.00 37.94 4.49
1518 1548 6.291269 CGTGAAGTGCTGAATTTCTGTTTTTC 60.291 38.462 5.36 6.87 0.00 2.29
1521 1551 6.892310 AGTGCTGAATTTCTGTTTTTCAAC 57.108 33.333 5.36 0.00 0.00 3.18
1556 1586 6.926630 TTTTTGGGTAATGGTATTCAGCTT 57.073 33.333 0.00 0.00 0.00 3.74
1676 1709 7.278875 ACCTGGCAAAGAAAAATAAATGAACA 58.721 30.769 0.00 0.00 0.00 3.18
1719 1752 2.372504 TCAACCAAACTTACCATCCCGA 59.627 45.455 0.00 0.00 0.00 5.14
1765 1798 1.102154 TGCAATTGCCATACTTCCCG 58.898 50.000 26.94 0.00 41.18 5.14
1850 1885 4.141551 GGACGGGGGAGTATAAGATGTTTT 60.142 45.833 0.00 0.00 0.00 2.43
1900 1935 2.923655 CTGACGAGTGATATGCAACGTT 59.076 45.455 0.00 0.00 40.17 3.99
1901 1936 3.322369 TGACGAGTGATATGCAACGTTT 58.678 40.909 0.00 0.00 40.17 3.60
1917 1952 8.456904 TGCAACGTTTTCTATATATATCCGAC 57.543 34.615 0.00 0.00 0.00 4.79
1957 1992 8.423906 AGAACATCCTATAATAGTGAACGGAT 57.576 34.615 0.00 0.00 0.00 4.18
1969 2004 8.645814 AATAGTGAACGGATGGAGTACATATA 57.354 34.615 0.00 0.00 40.72 0.86
1981 2016 9.712305 GATGGAGTACATATAAATACTTGCTGT 57.288 33.333 0.00 0.00 40.72 4.40
2080 2115 2.613595 TGCGATGCATTACCAGAATCAC 59.386 45.455 0.00 0.00 31.71 3.06
2096 2131 6.146837 CCAGAATCACGATGTTATCAAGATCC 59.853 42.308 0.00 0.00 0.00 3.36
2104 2139 6.127054 ACGATGTTATCAAGATCCTGGAGAAA 60.127 38.462 1.52 0.00 0.00 2.52
2185 2221 6.183360 GGCGTTCCAGCGTTCTTATATAATAC 60.183 42.308 0.00 0.00 38.18 1.89
2265 2302 6.019479 GTGATGTTCCTGAATACGAGATTGAC 60.019 42.308 0.00 0.00 0.00 3.18
2268 2305 3.371034 TCCTGAATACGAGATTGACCCA 58.629 45.455 0.00 0.00 0.00 4.51
2269 2306 3.772572 TCCTGAATACGAGATTGACCCAA 59.227 43.478 0.00 0.00 0.00 4.12
2286 2323 2.943033 CCCAAACGAACTTGACTTCACT 59.057 45.455 0.00 0.00 0.00 3.41
2329 2366 4.689345 AGGTATTTGTTAACTCGCAGTCAC 59.311 41.667 7.22 0.00 0.00 3.67
2330 2367 4.449743 GGTATTTGTTAACTCGCAGTCACA 59.550 41.667 7.22 0.00 0.00 3.58
2334 2371 5.493133 TTGTTAACTCGCAGTCACAATTT 57.507 34.783 7.22 0.00 30.68 1.82
2335 2372 5.493133 TGTTAACTCGCAGTCACAATTTT 57.507 34.783 7.22 0.00 0.00 1.82
2337 2374 7.017498 TGTTAACTCGCAGTCACAATTTTTA 57.983 32.000 7.22 0.00 0.00 1.52
2338 2375 6.908284 TGTTAACTCGCAGTCACAATTTTTAC 59.092 34.615 7.22 0.00 0.00 2.01
2339 2376 5.751243 AACTCGCAGTCACAATTTTTACT 57.249 34.783 0.00 0.00 0.00 2.24
2340 2377 5.344207 ACTCGCAGTCACAATTTTTACTC 57.656 39.130 0.00 0.00 0.00 2.59
2341 2378 4.084537 ACTCGCAGTCACAATTTTTACTCG 60.085 41.667 0.00 0.00 0.00 4.18
2347 2384 7.006210 CGCAGTCACAATTTTTACTCGAATAAC 59.994 37.037 0.00 0.00 0.00 1.89
2361 2398 5.886474 ACTCGAATAACTAGTCTGGACATGA 59.114 40.000 0.00 0.00 0.00 3.07
2439 2498 2.559698 TTCGGAAAGCAACATGGAGA 57.440 45.000 0.00 0.00 0.00 3.71
2446 2505 3.370840 AAGCAACATGGAGAGGCATTA 57.629 42.857 0.00 0.00 0.00 1.90
2457 2516 2.615912 GAGAGGCATTATGGTTGCTGTC 59.384 50.000 0.00 0.00 40.03 3.51
2460 2519 2.756760 AGGCATTATGGTTGCTGTCAAG 59.243 45.455 0.00 0.00 40.03 3.02
2484 2543 5.220710 AGCTGGATGATGATGTACTTACC 57.779 43.478 0.00 0.00 0.00 2.85
2510 2569 4.202010 CGAGAACAAAGTGTGGGTTGATTT 60.202 41.667 0.00 0.00 0.00 2.17
2515 2574 4.142182 ACAAAGTGTGGGTTGATTTCACTG 60.142 41.667 0.00 0.00 38.97 3.66
2517 2576 3.480470 AGTGTGGGTTGATTTCACTGAG 58.520 45.455 0.00 0.00 37.85 3.35
2528 2588 8.092687 GGTTGATTTCACTGAGTAGTTACCTTA 58.907 37.037 0.00 0.00 34.07 2.69
2529 2589 9.485206 GTTGATTTCACTGAGTAGTTACCTTAA 57.515 33.333 0.00 0.00 34.07 1.85
2561 2621 8.986477 ATTTATGTTGGCATTCTTTCACTTAC 57.014 30.769 0.00 0.00 36.58 2.34
2563 2623 4.130857 TGTTGGCATTCTTTCACTTACGA 58.869 39.130 0.00 0.00 0.00 3.43
2591 2652 2.161609 CGATTGCCCAAGTTGGTACTTC 59.838 50.000 20.54 10.74 42.67 3.01
2602 2663 5.641789 AGTTGGTACTTCCCTTACAGTTT 57.358 39.130 0.00 0.00 34.77 2.66
2603 2664 5.374071 AGTTGGTACTTCCCTTACAGTTTG 58.626 41.667 0.00 0.00 34.77 2.93
2716 2777 1.268845 GCTGTAACACAAACCAACCCG 60.269 52.381 0.00 0.00 0.00 5.28
2734 2795 3.072211 CCCGATGATGATTGTCATGGAG 58.928 50.000 0.00 0.00 37.20 3.86
2776 2837 4.993705 TGGAGTAATGTTCTTTCCAGGT 57.006 40.909 0.00 0.00 33.21 4.00
2814 2876 6.992664 ATTTGATAGCCACTAGTCTCATCT 57.007 37.500 0.00 0.00 0.00 2.90
2815 2877 5.781210 TTGATAGCCACTAGTCTCATCTG 57.219 43.478 0.00 0.00 0.00 2.90
2816 2878 5.053978 TGATAGCCACTAGTCTCATCTGA 57.946 43.478 0.00 0.00 0.00 3.27
2817 2879 5.639139 TGATAGCCACTAGTCTCATCTGAT 58.361 41.667 0.00 0.00 0.00 2.90
2818 2880 5.476254 TGATAGCCACTAGTCTCATCTGATG 59.524 44.000 11.42 11.42 0.00 3.07
2819 2881 2.364970 AGCCACTAGTCTCATCTGATGC 59.635 50.000 12.78 0.00 0.00 3.91
2820 2882 2.547642 GCCACTAGTCTCATCTGATGCC 60.548 54.545 12.78 3.63 0.00 4.40
2821 2883 2.697229 CCACTAGTCTCATCTGATGCCA 59.303 50.000 12.78 0.00 0.00 4.92
2822 2884 3.492309 CCACTAGTCTCATCTGATGCCAC 60.492 52.174 12.78 10.89 0.00 5.01
2823 2885 3.384146 CACTAGTCTCATCTGATGCCACT 59.616 47.826 19.04 19.04 0.00 4.00
2828 2890 5.609423 AGTCTCATCTGATGCCACTTAATC 58.391 41.667 12.78 0.00 0.00 1.75
2838 2900 3.505386 TGCCACTTAATCAACCACCATT 58.495 40.909 0.00 0.00 0.00 3.16
2840 2902 4.461081 TGCCACTTAATCAACCACCATTAC 59.539 41.667 0.00 0.00 0.00 1.89
2841 2903 4.461081 GCCACTTAATCAACCACCATTACA 59.539 41.667 0.00 0.00 0.00 2.41
2867 2930 4.254492 GCCCTAGTCAAACTTTCTAGGTG 58.746 47.826 13.92 8.34 45.33 4.00
2870 2933 6.351966 GCCCTAGTCAAACTTTCTAGGTGTAT 60.352 42.308 13.92 0.00 45.33 2.29
2885 2948 2.223758 GGTGTATACTCACGGCTTCCTC 60.224 54.545 4.17 0.00 39.00 3.71
2901 2964 5.065346 GGCTTCCTCTTGAACTAGTATTTGC 59.935 44.000 0.00 0.00 0.00 3.68
2902 2965 5.065346 GCTTCCTCTTGAACTAGTATTTGCC 59.935 44.000 0.00 0.00 0.00 4.52
2908 2971 8.616076 CCTCTTGAACTAGTATTTGCCTATTTG 58.384 37.037 0.00 0.00 0.00 2.32
2909 2972 8.506168 TCTTGAACTAGTATTTGCCTATTTGG 57.494 34.615 0.00 0.00 39.35 3.28
2910 2973 8.107095 TCTTGAACTAGTATTTGCCTATTTGGT 58.893 33.333 0.00 0.00 38.35 3.67
2911 2974 8.644374 TTGAACTAGTATTTGCCTATTTGGTT 57.356 30.769 0.00 0.00 38.35 3.67
2912 2975 9.742144 TTGAACTAGTATTTGCCTATTTGGTTA 57.258 29.630 0.00 0.00 38.35 2.85
2913 2976 9.169592 TGAACTAGTATTTGCCTATTTGGTTAC 57.830 33.333 0.00 0.00 38.35 2.50
2914 2977 7.781548 ACTAGTATTTGCCTATTTGGTTACG 57.218 36.000 0.00 0.00 38.35 3.18
2915 2978 7.333323 ACTAGTATTTGCCTATTTGGTTACGT 58.667 34.615 0.00 0.00 38.35 3.57
2916 2979 6.431198 AGTATTTGCCTATTTGGTTACGTG 57.569 37.500 0.00 0.00 38.35 4.49
2925 2988 6.625740 GCCTATTTGGTTACGTGTAGTGAGTA 60.626 42.308 0.00 0.00 38.35 2.59
2931 2994 5.477984 TGGTTACGTGTAGTGAGTAAAGGAT 59.522 40.000 0.00 0.00 32.94 3.24
2937 3000 5.238583 GTGTAGTGAGTAAAGGATTGCTGT 58.761 41.667 0.00 0.00 31.06 4.40
2982 3049 2.762327 AGTTACCGGTCCGTATGATGTT 59.238 45.455 12.40 0.00 0.00 2.71
2987 3054 5.534207 ACCGGTCCGTATGATGTTATTTA 57.466 39.130 11.06 0.00 0.00 1.40
2990 3057 5.227908 CGGTCCGTATGATGTTATTTAGCT 58.772 41.667 2.08 0.00 0.00 3.32
3110 3188 7.286087 TCATTATTTCTGCAACATAATCAGGCT 59.714 33.333 0.00 0.00 0.00 4.58
3131 3209 8.514594 CAGGCTTTCAGTTGACTATCAAAATAA 58.485 33.333 0.00 0.00 38.22 1.40
3198 3276 2.287909 GGGTGATTTGCGCAAACACTTA 60.288 45.455 37.41 23.04 35.12 2.24
3200 3278 3.425193 GGTGATTTGCGCAAACACTTAAG 59.575 43.478 37.41 0.00 35.12 1.85
3203 3281 5.683743 GTGATTTGCGCAAACACTTAAGTAA 59.316 36.000 35.14 18.36 33.60 2.24
3282 3360 1.750682 GCCACTCACCATATTCCCCAC 60.751 57.143 0.00 0.00 0.00 4.61
3304 3382 5.468072 CACATCACAGGGACTCTATTATTGC 59.532 44.000 0.00 0.00 34.60 3.56
3306 3384 6.554982 ACATCACAGGGACTCTATTATTGCTA 59.445 38.462 0.00 0.00 34.60 3.49
3357 3443 4.214119 ACTCGTGGATCTTTGTTCAATGTG 59.786 41.667 0.00 0.00 0.00 3.21
3392 3478 7.620880 TGAGTTACTTACATGAGCATAAACCT 58.379 34.615 0.00 0.00 0.00 3.50
3397 3483 5.882557 ACTTACATGAGCATAAACCTCAAGG 59.117 40.000 0.00 0.00 42.12 3.61
3445 3532 7.412020 GCCTTCGTGAGTACTTTATCTCAAAAG 60.412 40.741 0.00 0.00 41.41 2.27
3447 3534 9.360093 CTTCGTGAGTACTTTATCTCAAAAGAT 57.640 33.333 0.00 0.00 44.57 2.40
3448 3535 8.912787 TCGTGAGTACTTTATCTCAAAAGATC 57.087 34.615 0.00 0.00 41.46 2.75
3450 3537 9.360093 CGTGAGTACTTTATCTCAAAAGATCTT 57.640 33.333 0.88 0.88 41.46 2.40
3520 3607 9.860898 GCTTCAGATACCTAATTTGTTGAATTT 57.139 29.630 0.00 0.00 38.80 1.82
3534 3621 6.036577 TGTTGAATTTATTTTCTGCCCCTC 57.963 37.500 0.00 0.00 0.00 4.30
3541 3628 2.178912 TTTTCTGCCCCTCGTGTAAG 57.821 50.000 0.00 0.00 0.00 2.34
3666 3753 2.040278 AGTTACTTCTCCTGGCAATGCA 59.960 45.455 7.79 0.00 0.00 3.96
3678 3765 4.295870 CTGGCAATGCATGTAAGCTTATG 58.704 43.478 9.88 7.15 34.99 1.90
3679 3766 3.700539 TGGCAATGCATGTAAGCTTATGT 59.299 39.130 9.88 0.00 34.99 2.29
3682 3769 5.221028 GGCAATGCATGTAAGCTTATGTACA 60.221 40.000 9.88 5.81 34.84 2.90
3755 3853 9.461312 AAATTTATTCACCTGCTGTTACTGATA 57.539 29.630 0.00 0.00 0.00 2.15
3845 3943 1.390463 GTTGATGTCTTCTCGTTCGCC 59.610 52.381 0.00 0.00 0.00 5.54
3854 3952 2.846039 TCTCGTTCGCCTTGATACTC 57.154 50.000 0.00 0.00 0.00 2.59
3864 3962 3.039011 GCCTTGATACTCCAGGAGGTAA 58.961 50.000 21.31 6.16 33.35 2.85
3865 3963 3.648545 GCCTTGATACTCCAGGAGGTAAT 59.351 47.826 21.31 10.80 33.35 1.89
3903 4005 5.649395 AGCATTGCGTATTTCTATGCCATAT 59.351 36.000 2.38 0.00 41.84 1.78
3905 4007 6.252015 GCATTGCGTATTTCTATGCCATATTG 59.748 38.462 0.00 0.00 38.82 1.90
3910 4012 6.094048 GCGTATTTCTATGCCATATTGGATGT 59.906 38.462 0.00 0.00 40.96 3.06
3911 4013 7.362056 GCGTATTTCTATGCCATATTGGATGTT 60.362 37.037 0.00 0.00 40.96 2.71
3915 4017 8.481492 TTTCTATGCCATATTGGATGTTTCAT 57.519 30.769 0.00 0.00 40.96 2.57
3919 4021 6.151663 TGCCATATTGGATGTTTCATCTTG 57.848 37.500 9.16 1.97 40.96 3.02
3951 4054 8.958119 ACATTTTGTGTAGTCTCAGTTAGAAA 57.042 30.769 0.00 0.00 39.91 2.52
3952 4055 9.561069 ACATTTTGTGTAGTCTCAGTTAGAAAT 57.439 29.630 0.00 0.00 39.91 2.17
3960 4063 9.778741 TGTAGTCTCAGTTAGAAATTTGAACAT 57.221 29.630 12.70 0.00 35.47 2.71
3968 4071 9.033481 CAGTTAGAAATTTGAACATGCAGAAAA 57.967 29.630 12.70 0.00 0.00 2.29
4006 4143 4.078922 ACTCCCAGATCCTTCTAGATGACA 60.079 45.833 7.19 0.00 0.00 3.58
4015 4152 9.041354 AGATCCTTCTAGATGACAGTACTTTTT 57.959 33.333 7.19 0.00 0.00 1.94
4016 4153 9.308318 GATCCTTCTAGATGACAGTACTTTTTC 57.692 37.037 7.19 0.00 0.00 2.29
4052 4189 6.719301 ACTCTTTCAGATGATTGAAGGATGT 58.281 36.000 1.81 1.17 40.80 3.06
4055 4192 7.046652 TCTTTCAGATGATTGAAGGATGTCTC 58.953 38.462 0.00 0.00 37.99 3.36
4073 4210 7.228308 GGATGTCTCCCTTTTCATGATAAGAAG 59.772 40.741 22.84 18.74 35.28 2.85
4118 4255 3.876309 AGTTCTAAAGAAAGGCCACCA 57.124 42.857 5.01 0.00 35.58 4.17
4131 4268 1.475930 GGCCACCATTTAGAGCTCCTC 60.476 57.143 10.93 0.00 0.00 3.71
4152 4289 2.297701 CAAAGCATTATGCCTACGGGT 58.702 47.619 14.10 0.00 46.52 5.28
4173 4310 5.661759 GGGTTAAGAGAGTAAGATTCTCCCA 59.338 44.000 0.00 0.00 41.58 4.37
4242 4380 4.340097 TCAGCATTAGAATGGCTTGATTGG 59.660 41.667 4.49 0.00 36.90 3.16
4285 4423 5.835257 AGCAATCCATAATCCATTTTGACG 58.165 37.500 0.00 0.00 0.00 4.35
4293 4450 6.017440 CCATAATCCATTTTGACGATACGGTT 60.017 38.462 0.00 0.00 0.00 4.44
4298 4455 4.865925 CCATTTTGACGATACGGTTCTGTA 59.134 41.667 0.00 0.00 0.00 2.74
4305 4462 2.095869 CGATACGGTTCTGTATCCTCCG 60.096 54.545 19.68 9.77 45.08 4.63
4321 4478 5.006896 TCCTCCGGATACCATTATACACT 57.993 43.478 3.57 0.00 0.00 3.55
4349 4506 5.998363 ACTTTAGTTTGTCTTCCATCCTGAC 59.002 40.000 0.00 0.00 0.00 3.51
4362 4526 3.508762 CATCCTGACTTTGATTGCTTGC 58.491 45.455 0.00 0.00 0.00 4.01
4369 4533 4.022935 TGACTTTGATTGCTTGCCTACTTG 60.023 41.667 0.00 0.00 0.00 3.16
4371 4535 4.022849 ACTTTGATTGCTTGCCTACTTGAC 60.023 41.667 0.00 0.00 0.00 3.18
4373 4537 2.813754 TGATTGCTTGCCTACTTGACAC 59.186 45.455 0.00 0.00 0.00 3.67
4375 4539 1.882912 TGCTTGCCTACTTGACACTG 58.117 50.000 0.00 0.00 0.00 3.66
4391 4555 4.065088 GACACTGCTACAGGTTGATTGAA 58.935 43.478 0.00 0.00 35.51 2.69
4427 4591 0.475906 ATCCTGCTGATAGGCCCAAC 59.524 55.000 0.00 0.00 37.76 3.77
4436 4600 4.446371 CTGATAGGCCCAACTTTAGAGTG 58.554 47.826 0.00 0.00 35.91 3.51
4503 4667 5.188359 AGAAACCGTTGGAAGGTAATAGCTA 59.812 40.000 0.00 0.00 41.95 3.32
4507 4671 5.129815 ACCGTTGGAAGGTAATAGCTAATGA 59.870 40.000 0.00 0.00 40.80 2.57
4512 4676 8.568794 GTTGGAAGGTAATAGCTAATGATTTCC 58.431 37.037 16.62 16.62 0.00 3.13
4550 4718 7.766738 TGTCTTGTTCCATCGTAGCAAAATATA 59.233 33.333 0.00 0.00 0.00 0.86
4563 4731 8.547894 CGTAGCAAAATATACATTGTTCTAGCA 58.452 33.333 0.00 0.00 0.00 3.49
4571 4739 6.743575 ATACATTGTTCTAGCAAAGGTGTC 57.256 37.500 0.00 0.00 31.63 3.67
4586 4754 1.133976 GGTGTCCTCATGCTGGCTATT 60.134 52.381 0.00 0.00 0.00 1.73
4622 4790 3.070159 TCAGACCTCTCAAGTGTTTCCTG 59.930 47.826 0.00 0.00 0.00 3.86
4643 4811 0.110192 GCTTCGAAGGTTTGCGGAAG 60.110 55.000 25.77 0.00 0.00 3.46
4669 4837 2.998279 GCAATGAGGGCAGCACCAC 61.998 63.158 0.00 0.00 42.05 4.16
4702 4870 0.459899 TCATCGCGATAACAGCCAGT 59.540 50.000 23.22 0.00 0.00 4.00
4705 4873 0.037697 TCGCGATAACAGCCAGTTGT 60.038 50.000 3.71 0.00 41.50 3.32
4706 4874 0.370273 CGCGATAACAGCCAGTTGTC 59.630 55.000 0.00 6.38 42.82 3.18
4716 4884 2.033299 CAGCCAGTTGTCGTTGTTGATT 59.967 45.455 0.00 0.00 0.00 2.57
4726 4894 4.047822 GTCGTTGTTGATTTCATTTGGCA 58.952 39.130 0.00 0.00 0.00 4.92
4731 4899 5.988310 TGTTGATTTCATTTGGCAGATCT 57.012 34.783 0.00 0.00 0.00 2.75
4748 4916 8.599792 TGGCAGATCTTATTCATGATTGATAGA 58.400 33.333 0.00 0.00 0.00 1.98
4752 4920 9.669887 AGATCTTATTCATGATTGATAGAAGGC 57.330 33.333 0.00 0.00 0.00 4.35
4759 4927 5.131642 TCATGATTGATAGAAGGCCAACTCT 59.868 40.000 5.01 6.37 0.00 3.24
4762 4930 5.899547 TGATTGATAGAAGGCCAACTCTCTA 59.100 40.000 5.01 3.24 0.00 2.43
4769 4937 4.591072 AGAAGGCCAACTCTCTATACCATC 59.409 45.833 5.01 0.00 0.00 3.51
4770 4938 3.928754 AGGCCAACTCTCTATACCATCA 58.071 45.455 5.01 0.00 0.00 3.07
4802 4970 7.907563 GTGTATCTAAATTTTCTCTGCAGAAGC 59.092 37.037 18.85 0.00 39.90 3.86
4838 5007 4.263639 TGTTTCTTCCCTGCTGATCAGAAT 60.264 41.667 27.04 0.00 45.72 2.40
4839 5008 3.555527 TCTTCCCTGCTGATCAGAATG 57.444 47.619 27.04 12.99 45.72 2.67
4850 5020 4.334759 GCTGATCAGAATGCTGTTGTACAT 59.665 41.667 27.04 0.00 42.84 2.29
4855 5025 4.931601 TCAGAATGCTGTTGTACATCAGAC 59.068 41.667 29.69 21.96 42.84 3.51
4894 5064 7.229306 GCCATCAAGGAATTCATGTACAGATTA 59.771 37.037 7.93 0.00 41.22 1.75
4904 5074 9.823647 AATTCATGTACAGATTAATCTCTTCGT 57.176 29.630 15.24 12.26 34.22 3.85
4938 5108 2.745821 TGCTTCAGTGATAGCAAAGCAG 59.254 45.455 20.56 3.61 45.25 4.24
4943 5113 1.280133 AGTGATAGCAAAGCAGCTCCA 59.720 47.619 0.00 0.30 45.26 3.86
4953 5123 3.508845 AAGCAGCTCCACTTAAGGAAA 57.491 42.857 7.53 0.00 37.20 3.13
4964 5134 7.500559 GCTCCACTTAAGGAAATGTAATCTCAT 59.499 37.037 7.53 0.00 37.20 2.90
4970 5140 9.778993 CTTAAGGAAATGTAATCTCATGTTGTG 57.221 33.333 0.00 0.00 0.00 3.33
4974 5144 6.071952 GGAAATGTAATCTCATGTTGTGGTGT 60.072 38.462 0.00 0.00 0.00 4.16
4975 5145 5.885230 ATGTAATCTCATGTTGTGGTGTG 57.115 39.130 0.00 0.00 0.00 3.82
4978 5153 2.998316 TCTCATGTTGTGGTGTGACA 57.002 45.000 0.00 0.00 0.00 3.58
4985 5160 2.258755 GTTGTGGTGTGACACTTTTGC 58.741 47.619 16.07 0.00 41.84 3.68
4992 5167 1.268999 TGTGACACTTTTGCGGAATGC 60.269 47.619 7.20 0.00 46.70 3.56
4993 5168 0.313672 TGACACTTTTGCGGAATGCC 59.686 50.000 0.00 0.00 45.60 4.40
5009 5184 5.673514 GGAATGCCATTTGGTCATGTTATT 58.326 37.500 0.00 0.00 37.57 1.40
5028 5203 8.415950 TGTTATTAATCTTTCTGAAGGGCAAA 57.584 30.769 0.00 0.00 33.56 3.68
5029 5204 9.034800 TGTTATTAATCTTTCTGAAGGGCAAAT 57.965 29.630 0.00 0.99 33.56 2.32
5030 5205 9.521503 GTTATTAATCTTTCTGAAGGGCAAATC 57.478 33.333 0.00 0.00 33.56 2.17
5031 5206 7.968014 ATTAATCTTTCTGAAGGGCAAATCT 57.032 32.000 0.00 0.00 33.56 2.40
5032 5207 5.656213 AATCTTTCTGAAGGGCAAATCTG 57.344 39.130 0.00 0.00 33.56 2.90
5033 5208 4.104383 TCTTTCTGAAGGGCAAATCTGT 57.896 40.909 0.00 0.00 33.56 3.41
5034 5209 5.241403 TCTTTCTGAAGGGCAAATCTGTA 57.759 39.130 0.00 0.00 33.56 2.74
5035 5210 5.248640 TCTTTCTGAAGGGCAAATCTGTAG 58.751 41.667 0.00 0.00 33.56 2.74
5057 5232 4.022242 AGTGTATACTGAAGACTGCACGTT 60.022 41.667 4.17 0.00 35.34 3.99
5066 5241 4.211164 TGAAGACTGCACGTTACAAGAATG 59.789 41.667 0.00 0.00 0.00 2.67
5072 5247 3.671459 TGCACGTTACAAGAATGTACTCG 59.329 43.478 0.00 9.55 41.64 4.18
5075 5250 5.219914 GCACGTTACAAGAATGTACTCGTAC 60.220 44.000 13.74 0.35 43.93 3.67
5078 5253 3.844577 ACAAGAATGTACTCGTACGCT 57.155 42.857 11.24 0.00 38.24 5.07
5081 5256 1.197910 GAATGTACTCGTACGCTGCC 58.802 55.000 11.24 0.00 38.85 4.85
5123 5298 6.100714 ACTCTAGCCGATCCCCTAAAATTTAA 59.899 38.462 0.00 0.00 0.00 1.52
5127 5302 5.828328 AGCCGATCCCCTAAAATTTAAAGAG 59.172 40.000 0.00 0.00 0.00 2.85
5187 5365 9.768662 TTACTCTAAATTTTGGTCGTTTCTAGT 57.231 29.630 0.00 0.00 0.00 2.57
5196 5375 3.056107 TGGTCGTTTCTAGTTGATCCCTG 60.056 47.826 0.00 0.00 0.00 4.45
5199 5378 5.235516 GTCGTTTCTAGTTGATCCCTGAAA 58.764 41.667 0.00 0.00 0.00 2.69
5213 5392 4.766375 TCCCTGAAATTAGCGGAGTAAAG 58.234 43.478 0.00 0.00 0.00 1.85
5219 5398 6.551736 TGAAATTAGCGGAGTAAAGATTTGC 58.448 36.000 0.00 0.00 0.00 3.68
5233 5412 9.271828 AGTAAAGATTTGCTTTTACCAAAATGG 57.728 29.630 0.00 0.00 44.24 3.16
5297 5477 9.499479 TTTGCACACATATTAAATCCAAACATT 57.501 25.926 0.00 0.00 0.00 2.71
5389 5569 2.223711 ACACAACGAAGGGTTCAAATGC 60.224 45.455 0.00 0.00 36.49 3.56
5394 5574 3.074412 ACGAAGGGTTCAAATGCAGTAG 58.926 45.455 0.00 0.00 0.00 2.57
5483 5663 3.907474 TGGAGTTGGGTATGAACTTCTCA 59.093 43.478 0.00 0.00 38.81 3.27
5509 5689 0.248377 GATCCTGTGATGCGCTTTGC 60.248 55.000 9.73 0.00 46.70 3.68
5527 5718 1.281566 GCGGAAATTTTGCACCGTGG 61.282 55.000 15.11 0.00 45.91 4.94
5538 5729 1.669115 CACCGTGGTCTGGCTCAAG 60.669 63.158 0.00 0.00 0.00 3.02
5579 5773 2.783135 ACCGAAAGTTCTCATGCATGT 58.217 42.857 25.43 4.94 0.00 3.21
5592 5786 5.832060 TCTCATGCATGTCTCTCTCATCTTA 59.168 40.000 25.43 0.81 0.00 2.10
5625 5819 2.745728 GCAAGGTGATGCAACATGC 58.254 52.632 0.00 2.43 45.70 4.06
5650 5844 3.011144 TGATTTGCCATAGAACCTTGGGA 59.989 43.478 0.00 0.00 33.40 4.37
5655 5849 2.851195 CCATAGAACCTTGGGATTCCG 58.149 52.381 0.00 0.00 35.24 4.30
5662 5856 0.181114 CCTTGGGATTCCGATGCTCA 59.819 55.000 0.00 0.00 35.24 4.26
5664 5858 0.911769 TTGGGATTCCGATGCTCAGT 59.088 50.000 0.00 0.00 35.24 3.41
5673 5867 1.680522 CGATGCTCAGTAGGGCCACT 61.681 60.000 6.18 4.36 0.00 4.00
5677 5871 0.902531 GCTCAGTAGGGCCACTAACA 59.097 55.000 6.18 0.00 32.37 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.800370 TTAATGAACATACCAGCAAGATTGTA 57.200 30.769 0.00 0.00 0.00 2.41
41 42 8.547894 CGAAGATTGATGACGGTAATGATTTAA 58.452 33.333 0.00 0.00 0.00 1.52
55 56 3.511540 ACACACCTCTCGAAGATTGATGA 59.488 43.478 0.00 0.00 33.89 2.92
66 67 0.738762 CTCCATGCACACACCTCTCG 60.739 60.000 0.00 0.00 0.00 4.04
80 81 3.511477 AGCCTCATTATACCGACTCCAT 58.489 45.455 0.00 0.00 0.00 3.41
85 86 5.706369 TCTCTCTAAGCCTCATTATACCGAC 59.294 44.000 0.00 0.00 0.00 4.79
93 94 4.444591 CCTTGCATCTCTCTAAGCCTCATT 60.445 45.833 0.00 0.00 0.00 2.57
143 144 7.661847 GGTCATCGGGATTAAGATTTCAACTAT 59.338 37.037 0.00 0.00 0.00 2.12
145 146 5.823045 GGTCATCGGGATTAAGATTTCAACT 59.177 40.000 0.00 0.00 0.00 3.16
149 150 4.628074 TCGGTCATCGGGATTAAGATTTC 58.372 43.478 0.00 0.00 39.77 2.17
162 163 3.119955 TCAAGTTGAGTACTCGGTCATCG 60.120 47.826 17.85 3.69 35.54 3.84
168 169 3.594603 ACCATCAAGTTGAGTACTCGG 57.405 47.619 17.85 12.12 35.54 4.63
220 221 5.237779 TCGTGTGAGAAACATTAGGAAAACC 59.762 40.000 0.00 0.00 41.97 3.27
229 230 4.638421 TCAAAACCTCGTGTGAGAAACATT 59.362 37.500 0.00 0.00 45.57 2.71
258 260 5.345609 ACGTTGTTGTATTGCACGAATTA 57.654 34.783 0.00 0.00 0.00 1.40
311 314 8.353684 TGCCTCAAAACTTCGAAAAATTATGTA 58.646 29.630 0.00 0.00 0.00 2.29
312 315 7.206687 TGCCTCAAAACTTCGAAAAATTATGT 58.793 30.769 0.00 0.00 0.00 2.29
313 316 7.636259 TGCCTCAAAACTTCGAAAAATTATG 57.364 32.000 0.00 0.00 0.00 1.90
314 317 7.331687 CCATGCCTCAAAACTTCGAAAAATTAT 59.668 33.333 0.00 0.00 0.00 1.28
316 319 5.466393 CCATGCCTCAAAACTTCGAAAAATT 59.534 36.000 0.00 0.00 0.00 1.82
317 320 4.990426 CCATGCCTCAAAACTTCGAAAAAT 59.010 37.500 0.00 0.00 0.00 1.82
325 329 4.821805 CCGTATATCCATGCCTCAAAACTT 59.178 41.667 0.00 0.00 0.00 2.66
389 393 4.020617 CTCCGCTGGCTCCCACAA 62.021 66.667 0.00 0.00 0.00 3.33
429 436 0.822121 AAGTGTGAAAACGGGAGGGC 60.822 55.000 0.00 0.00 0.00 5.19
450 459 6.759827 TCAAGGGATAAATACTCACTTAACGC 59.240 38.462 0.00 0.00 34.13 4.84
496 506 8.260114 TCTGTTACAATGATTGCTTCTCATCTA 58.740 33.333 4.84 0.00 32.22 1.98
500 510 6.466812 TCTCTGTTACAATGATTGCTTCTCA 58.533 36.000 4.84 0.00 0.00 3.27
504 514 6.182627 TGGATCTCTGTTACAATGATTGCTT 58.817 36.000 4.84 0.00 0.00 3.91
541 552 3.951680 CAGGGAAGTAGAGAGGAGACTTC 59.048 52.174 5.61 5.61 45.46 3.01
542 553 3.335484 ACAGGGAAGTAGAGAGGAGACTT 59.665 47.826 0.00 0.00 44.43 3.01
553 564 5.923733 AGTAGATGAACACAGGGAAGTAG 57.076 43.478 0.00 0.00 0.00 2.57
589 603 1.674611 CGAGCGTCGTAGGCAAAGTG 61.675 60.000 0.00 0.00 34.72 3.16
594 608 4.175489 GAGCGAGCGTCGTAGGCA 62.175 66.667 8.72 0.00 42.81 4.75
620 634 2.671914 CGTCGAATCCGGTTCAAGGTTA 60.672 50.000 0.00 0.00 36.60 2.85
635 649 1.952133 CCGCAACTTCACCGTCGAA 60.952 57.895 0.00 0.00 0.00 3.71
639 653 0.600255 CTCTTCCGCAACTTCACCGT 60.600 55.000 0.00 0.00 0.00 4.83
643 657 1.140052 TGGTTCTCTTCCGCAACTTCA 59.860 47.619 0.00 0.00 0.00 3.02
656 670 5.170748 CCCATGCTTGTAAATTTGGTTCTC 58.829 41.667 0.00 0.00 0.00 2.87
665 679 3.954258 GAGCCTTACCCATGCTTGTAAAT 59.046 43.478 0.00 0.00 34.99 1.40
666 680 3.010138 AGAGCCTTACCCATGCTTGTAAA 59.990 43.478 0.00 0.00 34.99 2.01
669 683 0.995024 AGAGCCTTACCCATGCTTGT 59.005 50.000 0.00 0.00 34.99 3.16
675 689 3.041946 CTGGAAGTAGAGCCTTACCCAT 58.958 50.000 0.00 0.00 0.00 4.00
677 691 1.763545 CCTGGAAGTAGAGCCTTACCC 59.236 57.143 0.00 0.00 0.00 3.69
680 694 1.649633 TCCCCTGGAAGTAGAGCCTTA 59.350 52.381 0.00 0.00 0.00 2.69
714 728 1.227853 AATACCCCGCGGATTGAGC 60.228 57.895 30.73 0.00 0.00 4.26
740 760 0.179067 TGAAACGGTGGCGAAGAGTT 60.179 50.000 0.00 0.00 0.00 3.01
745 765 0.322322 AGGTATGAAACGGTGGCGAA 59.678 50.000 0.00 0.00 0.00 4.70
746 766 0.108520 GAGGTATGAAACGGTGGCGA 60.109 55.000 0.00 0.00 0.00 5.54
786 806 9.293404 ACAAGTACTACTACTGTATGACTCAAA 57.707 33.333 0.00 0.00 33.14 2.69
787 807 8.859236 ACAAGTACTACTACTGTATGACTCAA 57.141 34.615 0.00 0.00 33.14 3.02
790 810 9.956640 ACTAACAAGTACTACTACTGTATGACT 57.043 33.333 0.00 0.00 33.14 3.41
793 813 9.784680 CCAACTAACAAGTACTACTACTGTATG 57.215 37.037 0.00 0.00 33.14 2.39
794 814 9.525826 ACCAACTAACAAGTACTACTACTGTAT 57.474 33.333 0.00 0.00 33.14 2.29
795 815 8.786898 CACCAACTAACAAGTACTACTACTGTA 58.213 37.037 0.00 0.00 33.14 2.74
796 816 7.255730 CCACCAACTAACAAGTACTACTACTGT 60.256 40.741 0.00 0.00 33.14 3.55
797 817 7.040201 TCCACCAACTAACAAGTACTACTACTG 60.040 40.741 0.00 0.00 33.14 2.74
798 818 7.006509 TCCACCAACTAACAAGTACTACTACT 58.993 38.462 0.00 0.00 34.38 2.57
799 819 7.087007 GTCCACCAACTAACAAGTACTACTAC 58.913 42.308 0.00 0.00 0.00 2.73
800 820 6.209391 GGTCCACCAACTAACAAGTACTACTA 59.791 42.308 0.00 0.00 35.64 1.82
801 821 5.011431 GGTCCACCAACTAACAAGTACTACT 59.989 44.000 0.00 0.00 35.64 2.57
802 822 5.011431 AGGTCCACCAACTAACAAGTACTAC 59.989 44.000 0.00 0.00 38.89 2.73
803 823 5.011329 CAGGTCCACCAACTAACAAGTACTA 59.989 44.000 0.00 0.00 38.89 1.82
804 824 3.971971 AGGTCCACCAACTAACAAGTACT 59.028 43.478 0.00 0.00 38.89 2.73
805 825 4.062991 CAGGTCCACCAACTAACAAGTAC 58.937 47.826 0.00 0.00 38.89 2.73
806 826 3.712733 ACAGGTCCACCAACTAACAAGTA 59.287 43.478 0.00 0.00 38.89 2.24
807 827 2.508300 ACAGGTCCACCAACTAACAAGT 59.492 45.455 0.00 0.00 38.89 3.16
808 828 3.208747 ACAGGTCCACCAACTAACAAG 57.791 47.619 0.00 0.00 38.89 3.16
809 829 3.283751 CAACAGGTCCACCAACTAACAA 58.716 45.455 0.00 0.00 38.89 2.83
810 830 2.925724 CAACAGGTCCACCAACTAACA 58.074 47.619 0.00 0.00 38.89 2.41
846 866 1.137675 GATGGGAAAAAGATGGCTGGC 59.862 52.381 0.00 0.00 0.00 4.85
907 932 2.749044 TCCGTCGGTCCGAGGAAG 60.749 66.667 30.50 17.27 43.12 3.46
908 933 3.058160 GTCCGTCGGTCCGAGGAA 61.058 66.667 30.50 12.35 43.12 3.36
941 971 5.372373 GGAGACTTATGGAAGAGGAATTGG 58.628 45.833 0.00 0.00 36.45 3.16
1113 1143 2.590291 TCAGCGCCGTTTTCAGCA 60.590 55.556 2.29 0.00 0.00 4.41
1115 1145 1.961277 ACCTCAGCGCCGTTTTCAG 60.961 57.895 2.29 0.00 0.00 3.02
1338 1368 2.603473 CCCCACTGGTCCTCGACA 60.603 66.667 0.00 0.00 33.68 4.35
1395 1425 5.132502 TCAAGAAAGCAGAACAAATGGAGA 58.867 37.500 0.00 0.00 0.00 3.71
1434 1464 2.108250 ACTAAATCGGAATCCCCATGGG 59.892 50.000 25.30 25.30 46.11 4.00
1436 1466 3.149196 CCACTAAATCGGAATCCCCATG 58.851 50.000 0.00 0.00 34.14 3.66
1492 1522 3.206150 ACAGAAATTCAGCACTTCACGT 58.794 40.909 0.00 0.00 0.00 4.49
1496 1526 7.063308 TGTTGAAAAACAGAAATTCAGCACTTC 59.937 33.333 0.00 0.00 38.70 3.01
1546 1576 4.201822 CCCAAGCGAAAGTAAGCTGAATAC 60.202 45.833 0.00 0.00 43.78 1.89
1556 1586 0.545787 TCCCCTCCCAAGCGAAAGTA 60.546 55.000 0.00 0.00 0.00 2.24
1627 1657 2.197577 GCCGTGCTTGCAAACTAAAAA 58.802 42.857 0.00 0.00 0.00 1.94
1661 1691 5.949735 TCCGCCTCTGTTCATTTATTTTTC 58.050 37.500 0.00 0.00 0.00 2.29
1663 1693 6.530019 AATCCGCCTCTGTTCATTTATTTT 57.470 33.333 0.00 0.00 0.00 1.82
1697 1730 2.747446 CGGGATGGTAAGTTTGGTTGAG 59.253 50.000 0.00 0.00 0.00 3.02
1829 1864 4.384868 CCAAAACATCTTATACTCCCCCGT 60.385 45.833 0.00 0.00 0.00 5.28
1940 1975 8.107399 TGTACTCCATCCGTTCACTATTATAG 57.893 38.462 0.00 0.00 0.00 1.31
1957 1992 9.899661 AAACAGCAAGTATTTATATGTACTCCA 57.100 29.630 0.00 0.00 31.10 3.86
2005 2040 7.391148 ACACACAATTAACTCAAGTGAAAGT 57.609 32.000 0.00 0.00 35.76 2.66
2080 2115 5.459536 TCTCCAGGATCTTGATAACATCG 57.540 43.478 6.37 0.00 0.00 3.84
2096 2131 1.734465 GTTCGAGCCATGTTTCTCCAG 59.266 52.381 0.00 0.00 0.00 3.86
2128 2163 7.032580 TGCAAGCGTAATAAAAATACAGCATT 58.967 30.769 0.00 0.00 0.00 3.56
2265 2302 2.943033 AGTGAAGTCAAGTTCGTTTGGG 59.057 45.455 0.00 0.00 0.00 4.12
2268 2305 5.277828 GCCATTAGTGAAGTCAAGTTCGTTT 60.278 40.000 0.00 0.00 0.00 3.60
2269 2306 4.213482 GCCATTAGTGAAGTCAAGTTCGTT 59.787 41.667 0.00 0.00 0.00 3.85
2286 2323 9.640952 AATACCTTAGCTAAATCTTTGCCATTA 57.359 29.630 7.74 0.00 0.00 1.90
2321 2358 4.383774 TCGAGTAAAAATTGTGACTGCG 57.616 40.909 0.00 0.00 0.00 5.18
2334 2371 7.692460 TGTCCAGACTAGTTATTCGAGTAAA 57.308 36.000 1.53 0.00 32.40 2.01
2335 2372 7.555195 TCATGTCCAGACTAGTTATTCGAGTAA 59.445 37.037 0.00 0.00 32.40 2.24
2337 2374 5.886474 TCATGTCCAGACTAGTTATTCGAGT 59.114 40.000 0.00 0.00 34.83 4.18
2338 2375 6.378710 TCATGTCCAGACTAGTTATTCGAG 57.621 41.667 0.00 0.00 0.00 4.04
2339 2376 6.377429 ACTTCATGTCCAGACTAGTTATTCGA 59.623 38.462 0.00 0.00 0.00 3.71
2340 2377 6.565234 ACTTCATGTCCAGACTAGTTATTCG 58.435 40.000 0.00 0.00 0.00 3.34
2341 2378 8.779354 AAACTTCATGTCCAGACTAGTTATTC 57.221 34.615 0.00 0.00 0.00 1.75
2382 2419 9.691362 GAAGGCAATGAAACTATAAGAAACAAA 57.309 29.630 0.00 0.00 0.00 2.83
2385 2444 8.730680 TGAGAAGGCAATGAAACTATAAGAAAC 58.269 33.333 0.00 0.00 0.00 2.78
2395 2454 2.519013 ACCCTGAGAAGGCAATGAAAC 58.481 47.619 0.00 0.00 0.00 2.78
2399 2458 2.787473 TGTACCCTGAGAAGGCAATG 57.213 50.000 0.00 0.00 0.00 2.82
2403 2462 2.280628 CGAAATGTACCCTGAGAAGGC 58.719 52.381 0.00 0.00 0.00 4.35
2404 2463 2.500098 TCCGAAATGTACCCTGAGAAGG 59.500 50.000 0.00 0.00 0.00 3.46
2439 2498 2.512692 TGACAGCAACCATAATGCCT 57.487 45.000 0.00 0.00 44.91 4.75
2446 2505 1.884579 CAGCTTCTTGACAGCAACCAT 59.115 47.619 0.00 0.00 39.99 3.55
2457 2516 5.366460 AGTACATCATCATCCAGCTTCTTG 58.634 41.667 0.00 0.00 0.00 3.02
2460 2519 5.698545 GGTAAGTACATCATCATCCAGCTTC 59.301 44.000 0.00 0.00 0.00 3.86
2484 2543 0.859232 CCCACACTTTGTTCTCGTCG 59.141 55.000 0.00 0.00 0.00 5.12
2528 2588 7.427989 AGAATGCCAACATAAATCAGGAATT 57.572 32.000 0.00 0.00 34.62 2.17
2529 2589 7.427989 AAGAATGCCAACATAAATCAGGAAT 57.572 32.000 0.00 0.00 34.62 3.01
2541 2601 4.130857 TCGTAAGTGAAAGAATGCCAACA 58.869 39.130 0.00 0.00 39.48 3.33
2563 2623 3.074412 CAACTTGGGCAATCGAGTAACT 58.926 45.455 0.00 0.00 31.53 2.24
2573 2634 1.479757 GGGAAGTACCAACTTGGGCAA 60.480 52.381 12.62 0.00 46.09 4.52
2591 2652 6.192970 AGATATCCATCCAAACTGTAAGGG 57.807 41.667 0.00 0.00 39.30 3.95
2602 2663 4.216708 TGCAATGCAAAGATATCCATCCA 58.783 39.130 5.01 0.00 34.76 3.41
2603 2664 4.521639 TCTGCAATGCAAAGATATCCATCC 59.478 41.667 9.92 0.00 38.41 3.51
2716 2777 7.082602 GCATAAACTCCATGACAATCATCATC 58.917 38.462 0.00 0.00 37.20 2.92
2734 2795 4.226761 CAAGACAAACCTTCGGCATAAAC 58.773 43.478 0.00 0.00 0.00 2.01
2793 2855 5.449553 TCAGATGAGACTAGTGGCTATCAA 58.550 41.667 0.00 0.00 0.00 2.57
2800 2862 2.697229 TGGCATCAGATGAGACTAGTGG 59.303 50.000 15.12 0.00 0.00 4.00
2802 2864 3.641046 AGTGGCATCAGATGAGACTAGT 58.359 45.455 15.12 0.00 0.00 2.57
2811 2873 4.641989 GTGGTTGATTAAGTGGCATCAGAT 59.358 41.667 0.00 0.00 31.04 2.90
2814 2876 3.088532 GGTGGTTGATTAAGTGGCATCA 58.911 45.455 0.00 0.00 0.00 3.07
2815 2877 3.088532 TGGTGGTTGATTAAGTGGCATC 58.911 45.455 0.00 0.00 0.00 3.91
2816 2878 3.168035 TGGTGGTTGATTAAGTGGCAT 57.832 42.857 0.00 0.00 0.00 4.40
2817 2879 2.666272 TGGTGGTTGATTAAGTGGCA 57.334 45.000 0.00 0.00 0.00 4.92
2818 2880 4.461081 TGTAATGGTGGTTGATTAAGTGGC 59.539 41.667 0.00 0.00 0.00 5.01
2819 2881 5.943416 TCTGTAATGGTGGTTGATTAAGTGG 59.057 40.000 0.00 0.00 0.00 4.00
2820 2882 7.475015 CATCTGTAATGGTGGTTGATTAAGTG 58.525 38.462 0.00 0.00 0.00 3.16
2821 2883 6.095440 GCATCTGTAATGGTGGTTGATTAAGT 59.905 38.462 0.00 0.00 0.00 2.24
2822 2884 6.460123 GGCATCTGTAATGGTGGTTGATTAAG 60.460 42.308 0.00 0.00 0.00 1.85
2823 2885 5.359576 GGCATCTGTAATGGTGGTTGATTAA 59.640 40.000 0.00 0.00 0.00 1.40
2828 2890 1.750778 GGGCATCTGTAATGGTGGTTG 59.249 52.381 0.00 0.00 0.00 3.77
2838 2900 5.248477 AGAAAGTTTGACTAGGGCATCTGTA 59.752 40.000 0.00 0.00 0.00 2.74
2840 2902 4.583871 AGAAAGTTTGACTAGGGCATCTG 58.416 43.478 0.00 0.00 0.00 2.90
2841 2903 4.917906 AGAAAGTTTGACTAGGGCATCT 57.082 40.909 0.00 0.00 0.00 2.90
2867 2930 3.380637 TCAAGAGGAAGCCGTGAGTATAC 59.619 47.826 0.00 0.00 0.00 1.47
2870 2933 1.919240 TCAAGAGGAAGCCGTGAGTA 58.081 50.000 0.00 0.00 0.00 2.59
2885 2948 8.281212 ACCAAATAGGCAAATACTAGTTCAAG 57.719 34.615 0.00 0.00 43.14 3.02
2901 2964 5.717119 ACTCACTACACGTAACCAAATAGG 58.283 41.667 0.00 0.00 45.67 2.57
2902 2965 8.746922 TTTACTCACTACACGTAACCAAATAG 57.253 34.615 0.00 0.00 0.00 1.73
2908 2971 5.376854 TCCTTTACTCACTACACGTAACC 57.623 43.478 0.00 0.00 0.00 2.85
2909 2972 6.183360 GCAATCCTTTACTCACTACACGTAAC 60.183 42.308 0.00 0.00 0.00 2.50
2910 2973 5.865552 GCAATCCTTTACTCACTACACGTAA 59.134 40.000 0.00 0.00 0.00 3.18
2911 2974 5.184479 AGCAATCCTTTACTCACTACACGTA 59.816 40.000 0.00 0.00 0.00 3.57
2912 2975 4.021368 AGCAATCCTTTACTCACTACACGT 60.021 41.667 0.00 0.00 0.00 4.49
2913 2976 4.327357 CAGCAATCCTTTACTCACTACACG 59.673 45.833 0.00 0.00 0.00 4.49
2914 2977 5.238583 ACAGCAATCCTTTACTCACTACAC 58.761 41.667 0.00 0.00 0.00 2.90
2915 2978 5.483685 ACAGCAATCCTTTACTCACTACA 57.516 39.130 0.00 0.00 0.00 2.74
2916 2979 5.701290 ACAACAGCAATCCTTTACTCACTAC 59.299 40.000 0.00 0.00 0.00 2.73
2925 2988 5.769662 TCAACTATGACAACAGCAATCCTTT 59.230 36.000 0.00 0.00 0.00 3.11
2960 3027 2.100252 ACATCATACGGACCGGTAACTG 59.900 50.000 20.00 12.06 0.00 3.16
3024 3102 9.973450 GCTGAAATCATACAGAAAGTAGATAGA 57.027 33.333 0.00 0.00 35.85 1.98
3028 3106 7.547019 CAGTGCTGAAATCATACAGAAAGTAGA 59.453 37.037 0.00 0.00 35.85 2.59
3033 3111 4.761227 TGCAGTGCTGAAATCATACAGAAA 59.239 37.500 17.60 0.00 36.38 2.52
3035 3113 3.941573 TGCAGTGCTGAAATCATACAGA 58.058 40.909 17.60 0.00 36.38 3.41
3049 3127 8.693542 AAGAAACATAAGAATTTATGCAGTGC 57.306 30.769 8.58 8.58 46.60 4.40
3156 3234 6.423604 CACCCTGAAAATAAACATTTCCACAC 59.576 38.462 0.00 0.00 36.23 3.82
3198 3276 4.263112 GGTTCCAGAGCTCCTTTCTTACTT 60.263 45.833 10.93 0.00 0.00 2.24
3200 3278 3.262151 AGGTTCCAGAGCTCCTTTCTTAC 59.738 47.826 10.93 0.00 0.00 2.34
3203 3281 2.037385 AGGTTCCAGAGCTCCTTTCT 57.963 50.000 10.93 0.00 0.00 2.52
3267 3345 2.849318 TGTGATGTGGGGAATATGGTGA 59.151 45.455 0.00 0.00 0.00 4.02
3282 3360 5.862845 AGCAATAATAGAGTCCCTGTGATG 58.137 41.667 0.00 0.00 0.00 3.07
3325 3403 2.379972 AGATCCACGAGTTAGGACTGG 58.620 52.381 0.00 0.00 36.60 4.00
3326 3404 4.177026 CAAAGATCCACGAGTTAGGACTG 58.823 47.826 0.00 0.00 36.60 3.51
3327 3405 3.833070 ACAAAGATCCACGAGTTAGGACT 59.167 43.478 0.00 0.00 36.60 3.85
3328 3406 4.189639 ACAAAGATCCACGAGTTAGGAC 57.810 45.455 0.00 0.00 36.60 3.85
3357 3443 7.548097 TCATGTAAGTAACTCATTCCTCTGTC 58.452 38.462 0.00 0.00 0.00 3.51
3392 3478 2.167693 GTCACGGTGGATGATACCTTGA 59.832 50.000 8.50 0.00 42.17 3.02
3397 3483 2.167693 TCAAGGTCACGGTGGATGATAC 59.832 50.000 8.50 0.00 0.00 2.24
3520 3607 3.516300 TCTTACACGAGGGGCAGAAAATA 59.484 43.478 0.00 0.00 0.00 1.40
3521 3608 2.304761 TCTTACACGAGGGGCAGAAAAT 59.695 45.455 0.00 0.00 0.00 1.82
3529 3616 5.935789 TGTTTCTATTTTCTTACACGAGGGG 59.064 40.000 0.00 0.00 0.00 4.79
3615 3702 5.046663 GTCCTCTCTGACTTTTCTTCTCCAT 60.047 44.000 0.00 0.00 32.39 3.41
3886 3988 7.615582 ACATCCAATATGGCATAGAAATACG 57.384 36.000 13.39 1.81 37.47 3.06
3887 3989 9.846248 GAAACATCCAATATGGCATAGAAATAC 57.154 33.333 13.39 0.00 37.47 1.89
3903 4005 8.175925 TGTTGATTACAAGATGAAACATCCAA 57.824 30.769 7.93 2.03 36.64 3.53
3905 4007 9.643693 AAATGTTGATTACAAGATGAAACATCC 57.356 29.630 7.93 0.00 39.40 3.51
3910 4012 9.814899 ACACAAAATGTTGATTACAAGATGAAA 57.185 25.926 1.62 0.00 38.98 2.69
3915 4017 9.337396 AGACTACACAAAATGTTGATTACAAGA 57.663 29.630 1.62 0.00 43.19 3.02
3919 4021 8.774586 ACTGAGACTACACAAAATGTTGATTAC 58.225 33.333 1.62 0.00 43.19 1.89
3925 4027 8.958119 TTCTAACTGAGACTACACAAAATGTT 57.042 30.769 0.00 0.00 36.96 2.71
3951 4054 8.675504 TCAAACAAATTTTCTGCATGTTCAAAT 58.324 25.926 0.42 0.00 33.39 2.32
3952 4055 8.037382 TCAAACAAATTTTCTGCATGTTCAAA 57.963 26.923 0.42 0.00 33.39 2.69
3954 4057 7.789273 ATCAAACAAATTTTCTGCATGTTCA 57.211 28.000 0.42 0.00 33.39 3.18
3961 4064 9.508567 GGAGTATCTATCAAACAAATTTTCTGC 57.491 33.333 0.00 0.00 33.73 4.26
3968 4071 8.160106 GGATCTGGGAGTATCTATCAAACAAAT 58.840 37.037 0.00 0.00 33.73 2.32
4052 4189 8.551440 TCAATCTTCTTATCATGAAAAGGGAGA 58.449 33.333 0.00 1.66 0.00 3.71
4055 4192 9.128404 TCATCAATCTTCTTATCATGAAAAGGG 57.872 33.333 0.00 0.00 0.00 3.95
4073 4210 4.403432 TGGGCCTTCTCAATTTCATCAATC 59.597 41.667 4.53 0.00 0.00 2.67
4118 4255 4.516652 ATGCTTTGGAGGAGCTCTAAAT 57.483 40.909 14.64 0.00 39.50 1.40
4152 4289 6.503944 AGGTGGGAGAATCTTACTCTCTTAA 58.496 40.000 0.00 0.00 39.48 1.85
4193 4331 1.709578 TTGGTAATTGCCAACTGCCA 58.290 45.000 22.45 1.02 42.98 4.92
4200 4338 4.754114 GCTGAAACAAATTGGTAATTGCCA 59.246 37.500 11.68 11.68 36.62 4.92
4201 4339 4.754114 TGCTGAAACAAATTGGTAATTGCC 59.246 37.500 5.49 5.49 0.00 4.52
4219 4357 4.340097 CCAATCAAGCCATTCTAATGCTGA 59.660 41.667 0.00 1.22 35.08 4.26
4242 4380 4.931002 TGCTAAAGCTTGAAATTGGCAATC 59.069 37.500 14.04 3.32 37.56 2.67
4256 4394 7.607615 AAATGGATTATGGATTGCTAAAGCT 57.392 32.000 3.26 0.00 42.66 3.74
4285 4423 3.555917 CGGAGGATACAGAACCGTATC 57.444 52.381 0.00 3.06 44.68 2.24
4305 4462 9.477484 CTAAAGTCACAGTGTATAATGGTATCC 57.523 37.037 0.00 0.00 0.00 2.59
4310 4467 8.999431 ACAAACTAAAGTCACAGTGTATAATGG 58.001 33.333 0.00 0.00 0.00 3.16
4315 4472 7.441458 GGAAGACAAACTAAAGTCACAGTGTAT 59.559 37.037 0.00 0.00 37.23 2.29
4319 4476 5.741011 TGGAAGACAAACTAAAGTCACAGT 58.259 37.500 0.00 0.00 37.23 3.55
4321 4478 5.763204 GGATGGAAGACAAACTAAAGTCACA 59.237 40.000 0.00 0.00 37.23 3.58
4349 4506 4.022935 TGTCAAGTAGGCAAGCAATCAAAG 60.023 41.667 0.00 0.00 0.00 2.77
4362 4526 2.563179 ACCTGTAGCAGTGTCAAGTAGG 59.437 50.000 0.00 0.00 0.00 3.18
4369 4533 3.664107 TCAATCAACCTGTAGCAGTGTC 58.336 45.455 0.00 0.00 0.00 3.67
4371 4535 5.437289 TTTTCAATCAACCTGTAGCAGTG 57.563 39.130 0.00 0.00 0.00 3.66
4373 4537 5.346822 GCATTTTTCAATCAACCTGTAGCAG 59.653 40.000 0.00 0.00 0.00 4.24
4375 4539 5.346822 CAGCATTTTTCAATCAACCTGTAGC 59.653 40.000 0.00 0.00 0.00 3.58
4391 4555 4.562143 GCAGGATTTTCACTCCAGCATTTT 60.562 41.667 2.30 0.00 42.91 1.82
4427 4591 4.759782 ACCGATCAATGACCACTCTAAAG 58.240 43.478 0.00 0.00 0.00 1.85
4436 4600 1.398390 GCAGACAACCGATCAATGACC 59.602 52.381 0.00 0.00 0.00 4.02
4550 4718 3.821033 GGACACCTTTGCTAGAACAATGT 59.179 43.478 0.00 0.00 0.00 2.71
4563 4731 0.610232 GCCAGCATGAGGACACCTTT 60.610 55.000 8.66 0.00 39.69 3.11
4569 4737 2.492012 CAGAATAGCCAGCATGAGGAC 58.508 52.381 8.66 1.02 39.69 3.85
4571 4739 1.419012 TCCAGAATAGCCAGCATGAGG 59.581 52.381 0.00 0.00 39.69 3.86
4586 4754 1.416401 GGTCTGACCTGTTGTTCCAGA 59.584 52.381 19.53 0.00 34.73 3.86
4622 4790 0.949105 TCCGCAAACCTTCGAAGCTC 60.949 55.000 19.99 5.18 0.00 4.09
4643 4811 0.464373 TGCCCTCATTGCGATCCTTC 60.464 55.000 0.00 0.00 0.00 3.46
4669 4837 4.498520 ATGAGCGTGACGAGCGGG 62.499 66.667 10.10 0.00 40.04 6.13
4685 4853 1.290203 CAACTGGCTGTTATCGCGAT 58.710 50.000 26.78 26.78 37.07 4.58
4694 4862 0.732571 CAACAACGACAACTGGCTGT 59.267 50.000 0.00 0.00 0.00 4.40
4702 4870 4.505922 GCCAAATGAAATCAACAACGACAA 59.494 37.500 0.00 0.00 0.00 3.18
4705 4873 4.037327 TCTGCCAAATGAAATCAACAACGA 59.963 37.500 0.00 0.00 0.00 3.85
4706 4874 4.297510 TCTGCCAAATGAAATCAACAACG 58.702 39.130 0.00 0.00 0.00 4.10
4716 4884 7.885009 TCATGAATAAGATCTGCCAAATGAA 57.115 32.000 0.00 0.00 0.00 2.57
4726 4894 9.669887 GCCTTCTATCAATCATGAATAAGATCT 57.330 33.333 0.00 0.00 39.49 2.75
4731 4899 8.000709 AGTTGGCCTTCTATCAATCATGAATAA 58.999 33.333 3.32 0.00 39.49 1.40
4748 4916 4.298626 TGATGGTATAGAGAGTTGGCCTT 58.701 43.478 3.32 0.00 0.00 4.35
4750 4918 4.530161 AGATGATGGTATAGAGAGTTGGCC 59.470 45.833 0.00 0.00 0.00 5.36
4752 4920 7.440556 CACAAAGATGATGGTATAGAGAGTTGG 59.559 40.741 0.00 0.00 0.00 3.77
4802 4970 4.380867 GGGAAGAAACACAAGCATACCATG 60.381 45.833 0.00 0.00 0.00 3.66
4811 4979 2.575532 TCAGCAGGGAAGAAACACAAG 58.424 47.619 0.00 0.00 0.00 3.16
4812 4980 2.727123 TCAGCAGGGAAGAAACACAA 57.273 45.000 0.00 0.00 0.00 3.33
4813 4981 2.106338 TGATCAGCAGGGAAGAAACACA 59.894 45.455 0.00 0.00 0.00 3.72
4819 4988 2.421107 GCATTCTGATCAGCAGGGAAGA 60.421 50.000 18.36 0.00 44.98 2.87
4838 5007 2.812358 ACGTCTGATGTACAACAGCA 57.188 45.000 24.15 12.85 42.82 4.41
4839 5008 5.347635 TGATAAACGTCTGATGTACAACAGC 59.652 40.000 24.15 18.33 34.60 4.40
4850 5020 4.794278 TGGCTTAGTGATAAACGTCTGA 57.206 40.909 0.00 0.00 0.00 3.27
4855 5025 5.116180 TCCTTGATGGCTTAGTGATAAACG 58.884 41.667 0.00 0.00 35.26 3.60
4894 5064 9.654663 AGCAAACTAGTATAAAACGAAGAGATT 57.345 29.630 0.00 0.00 0.00 2.40
4918 5088 2.477525 GCTGCTTTGCTATCACTGAAGC 60.478 50.000 0.00 0.00 42.19 3.86
4919 5089 3.008330 AGCTGCTTTGCTATCACTGAAG 58.992 45.455 0.00 0.00 42.10 3.02
4938 5108 6.823689 TGAGATTACATTTCCTTAAGTGGAGC 59.176 38.462 0.97 0.00 37.43 4.70
4943 5113 9.520515 ACAACATGAGATTACATTTCCTTAAGT 57.479 29.630 0.00 0.00 0.00 2.24
4953 5123 5.412594 GTCACACCACAACATGAGATTACAT 59.587 40.000 0.00 0.00 0.00 2.29
4964 5134 2.352225 GCAAAAGTGTCACACCACAACA 60.352 45.455 3.66 0.00 37.82 3.33
4970 5140 0.736053 TTCCGCAAAAGTGTCACACC 59.264 50.000 3.66 0.00 34.49 4.16
4974 5144 0.313672 GGCATTCCGCAAAAGTGTCA 59.686 50.000 0.00 0.00 45.17 3.58
4975 5145 0.313672 TGGCATTCCGCAAAAGTGTC 59.686 50.000 0.00 0.00 45.17 3.67
4978 5153 2.415776 CAAATGGCATTCCGCAAAAGT 58.584 42.857 14.04 0.00 45.17 2.66
4985 5160 1.477700 ACATGACCAAATGGCATTCCG 59.522 47.619 14.04 8.93 39.32 4.30
5009 5184 6.248433 ACAGATTTGCCCTTCAGAAAGATTA 58.752 36.000 0.00 0.00 34.14 1.75
5028 5203 6.603599 TGCAGTCTTCAGTATACACTACAGAT 59.396 38.462 5.50 0.00 32.21 2.90
5029 5204 5.944007 TGCAGTCTTCAGTATACACTACAGA 59.056 40.000 5.50 0.00 32.21 3.41
5030 5205 6.030849 GTGCAGTCTTCAGTATACACTACAG 58.969 44.000 5.50 0.00 32.21 2.74
5031 5206 5.391629 CGTGCAGTCTTCAGTATACACTACA 60.392 44.000 5.50 0.00 32.21 2.74
5032 5207 5.029014 CGTGCAGTCTTCAGTATACACTAC 58.971 45.833 5.50 0.00 32.21 2.73
5033 5208 4.698780 ACGTGCAGTCTTCAGTATACACTA 59.301 41.667 5.50 0.00 32.21 2.74
5034 5209 3.506455 ACGTGCAGTCTTCAGTATACACT 59.494 43.478 5.50 0.00 34.42 3.55
5035 5210 3.834610 ACGTGCAGTCTTCAGTATACAC 58.165 45.455 5.50 0.00 0.00 2.90
5057 5232 4.655027 CAGCGTACGAGTACATTCTTGTA 58.345 43.478 21.65 0.00 37.28 2.41
5066 5241 0.860618 CGAAGGCAGCGTACGAGTAC 60.861 60.000 21.65 5.89 0.00 2.73
5081 5256 0.320247 AGTTGCTCTCAGTGCCGAAG 60.320 55.000 0.00 0.00 0.00 3.79
5091 5266 1.000717 GGATCGGCTAGAGTTGCTCTC 60.001 57.143 1.54 2.14 40.34 3.20
5094 5269 1.403687 GGGGATCGGCTAGAGTTGCT 61.404 60.000 0.00 0.00 0.00 3.91
5168 5343 7.368059 GGATCAACTAGAAACGACCAAAATTT 58.632 34.615 0.00 0.00 0.00 1.82
5169 5344 6.072119 GGGATCAACTAGAAACGACCAAAATT 60.072 38.462 0.00 0.00 0.00 1.82
5171 5346 4.758165 GGGATCAACTAGAAACGACCAAAA 59.242 41.667 0.00 0.00 0.00 2.44
5172 5347 4.041198 AGGGATCAACTAGAAACGACCAAA 59.959 41.667 0.00 0.00 0.00 3.28
5173 5348 3.581332 AGGGATCAACTAGAAACGACCAA 59.419 43.478 0.00 0.00 0.00 3.67
5187 5365 3.199946 ACTCCGCTAATTTCAGGGATCAA 59.800 43.478 0.00 0.00 0.00 2.57
5196 5375 6.786207 AGCAAATCTTTACTCCGCTAATTTC 58.214 36.000 0.00 0.00 0.00 2.17
5199 5378 6.759497 AAAGCAAATCTTTACTCCGCTAAT 57.241 33.333 0.00 0.00 42.87 1.73
5260 5440 7.830940 AATATGTGTGCAAATATGTTGTTGG 57.169 32.000 0.00 0.00 0.00 3.77
5356 5536 5.005299 CCCTTCGTTGTGTTTGAATTTGAAC 59.995 40.000 0.00 0.00 0.00 3.18
5373 5553 1.981256 ACTGCATTTGAACCCTTCGT 58.019 45.000 0.00 0.00 0.00 3.85
5389 5569 5.814188 TGTGCTTTTATCATGCTCTCTACTG 59.186 40.000 0.00 0.00 0.00 2.74
5394 5574 5.557891 AGTTGTGCTTTTATCATGCTCTC 57.442 39.130 0.00 0.00 0.00 3.20
5483 5663 1.202348 CGCATCACAGGATCGAGAACT 60.202 52.381 0.00 0.00 0.00 3.01
5509 5689 0.031449 ACCACGGTGCAAAATTTCCG 59.969 50.000 12.95 12.95 46.98 4.30
5514 5694 1.805428 GCCAGACCACGGTGCAAAAT 61.805 55.000 1.68 0.00 0.00 1.82
5515 5695 2.485795 GCCAGACCACGGTGCAAAA 61.486 57.895 1.68 0.00 0.00 2.44
5527 5718 3.557228 ATGAATCCTCTTGAGCCAGAC 57.443 47.619 0.00 0.00 0.00 3.51
5592 5786 6.778834 TCACCTTGCATAACATGATCATTT 57.221 33.333 5.16 6.88 0.00 2.32
5625 5819 5.353938 CCAAGGTTCTATGGCAAATCATTG 58.646 41.667 0.00 0.00 39.65 2.82
5626 5820 4.406649 CCCAAGGTTCTATGGCAAATCATT 59.593 41.667 0.00 0.00 35.28 2.57
5655 5849 1.414158 TAGTGGCCCTACTGAGCATC 58.586 55.000 0.00 0.00 32.19 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.