Multiple sequence alignment - TraesCS3B01G306000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G306000 chr3B 100.000 3801 0 0 1 3801 491522219 491518419 0.000000e+00 7020
1 TraesCS3B01G306000 chr3B 94.737 171 9 0 3631 3801 582034916 582034746 2.250000e-67 267
2 TraesCS3B01G306000 chr3D 92.945 1701 46 23 1411 3062 376920420 376918745 0.000000e+00 2409
3 TraesCS3B01G306000 chr3D 94.131 443 22 3 960 1401 376920914 376920475 0.000000e+00 671
4 TraesCS3B01G306000 chr3D 93.478 138 8 1 3443 3580 5619085 5619221 1.790000e-48 204
5 TraesCS3B01G306000 chr3A 92.836 1005 27 8 2070 3041 501650524 501649532 0.000000e+00 1415
6 TraesCS3B01G306000 chr3A 94.609 575 22 7 830 1401 501651890 501651322 0.000000e+00 881
7 TraesCS3B01G306000 chr3A 93.493 584 14 7 1509 2069 501651190 501650608 0.000000e+00 846
8 TraesCS3B01G306000 chr5B 98.555 761 11 0 1 761 672844191 672844951 0.000000e+00 1345
9 TraesCS3B01G306000 chr1B 98.292 761 13 0 1 761 7970783 7971543 0.000000e+00 1334
10 TraesCS3B01G306000 chr1B 78.162 751 136 13 1 749 645333716 645332992 1.610000e-123 453
11 TraesCS3B01G306000 chr7B 97.900 762 15 1 1 761 678854403 678855164 0.000000e+00 1317
12 TraesCS3B01G306000 chr4D 84.265 769 110 4 1 758 51905946 51906714 0.000000e+00 739
13 TraesCS3B01G306000 chr2B 90.602 532 32 11 3117 3633 30486629 30486101 0.000000e+00 689
14 TraesCS3B01G306000 chr2B 75.469 693 152 16 16 699 534230476 534229793 4.740000e-84 322
15 TraesCS3B01G306000 chr5D 90.057 523 36 9 3072 3580 344876840 344876320 0.000000e+00 664
16 TraesCS3B01G306000 chr5D 94.152 171 10 0 3631 3801 458866846 458866676 1.050000e-65 261
17 TraesCS3B01G306000 chr7A 76.340 765 162 16 6 761 711299280 711298526 3.560000e-105 392
18 TraesCS3B01G306000 chr1A 75.617 689 156 11 16 698 369370535 369369853 7.870000e-87 331
19 TraesCS3B01G306000 chr1A 91.228 171 15 0 3631 3801 522149310 522149140 2.280000e-57 233
20 TraesCS3B01G306000 chr1A 91.228 171 15 0 3631 3801 577605750 577605580 2.280000e-57 233
21 TraesCS3B01G306000 chr5A 74.459 693 159 17 16 699 473609495 473608812 2.240000e-72 283
22 TraesCS3B01G306000 chr2D 94.767 172 9 0 3630 3801 629979964 629980135 6.260000e-68 268
23 TraesCS3B01G306000 chr6B 94.737 171 9 0 3631 3801 132934083 132933913 2.250000e-67 267
24 TraesCS3B01G306000 chr6B 95.092 163 8 0 3639 3801 34805208 34805046 1.350000e-64 257
25 TraesCS3B01G306000 chr2A 94.152 171 10 0 3631 3801 11995116 11995286 1.050000e-65 261
26 TraesCS3B01G306000 chr2A 93.023 172 12 0 3630 3801 766643699 766643870 6.300000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G306000 chr3B 491518419 491522219 3800 True 7020.000000 7020 100.000 1 3801 1 chr3B.!!$R1 3800
1 TraesCS3B01G306000 chr3D 376918745 376920914 2169 True 1540.000000 2409 93.538 960 3062 2 chr3D.!!$R1 2102
2 TraesCS3B01G306000 chr3A 501649532 501651890 2358 True 1047.333333 1415 93.646 830 3041 3 chr3A.!!$R1 2211
3 TraesCS3B01G306000 chr5B 672844191 672844951 760 False 1345.000000 1345 98.555 1 761 1 chr5B.!!$F1 760
4 TraesCS3B01G306000 chr1B 7970783 7971543 760 False 1334.000000 1334 98.292 1 761 1 chr1B.!!$F1 760
5 TraesCS3B01G306000 chr1B 645332992 645333716 724 True 453.000000 453 78.162 1 749 1 chr1B.!!$R1 748
6 TraesCS3B01G306000 chr7B 678854403 678855164 761 False 1317.000000 1317 97.900 1 761 1 chr7B.!!$F1 760
7 TraesCS3B01G306000 chr4D 51905946 51906714 768 False 739.000000 739 84.265 1 758 1 chr4D.!!$F1 757
8 TraesCS3B01G306000 chr2B 30486101 30486629 528 True 689.000000 689 90.602 3117 3633 1 chr2B.!!$R1 516
9 TraesCS3B01G306000 chr2B 534229793 534230476 683 True 322.000000 322 75.469 16 699 1 chr2B.!!$R2 683
10 TraesCS3B01G306000 chr5D 344876320 344876840 520 True 664.000000 664 90.057 3072 3580 1 chr5D.!!$R1 508
11 TraesCS3B01G306000 chr7A 711298526 711299280 754 True 392.000000 392 76.340 6 761 1 chr7A.!!$R1 755
12 TraesCS3B01G306000 chr1A 369369853 369370535 682 True 331.000000 331 75.617 16 698 1 chr1A.!!$R1 682
13 TraesCS3B01G306000 chr5A 473608812 473609495 683 True 283.000000 283 74.459 16 699 1 chr5A.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 906 0.256464 TTCCGTCCCTCTCTCTCCTC 59.744 60.0 0.00 0.0 0.00 3.71 F
1787 1873 0.839946 CATGGTACCCTAAGGCTGCT 59.160 55.0 10.07 0.0 36.11 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2526 2709 0.252197 ACTTGTTAGCCGGGTCATCC 59.748 55.0 10.79 0.0 0.0 3.51 R
3637 3859 0.107606 AGTGTGGTACCAACGTGCAA 60.108 50.0 18.31 0.0 0.0 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.482627 TCAACGAGGTTGCATTAATTAAATTTT 57.517 25.926 1.21 0.00 42.55 1.82
85 86 5.237779 GGGAATCATCGGCGAAAAGTAAATA 59.762 40.000 15.93 0.00 0.00 1.40
251 252 8.648557 TTGTAGGAATAAATTCATCAGTCTCG 57.351 34.615 5.15 0.00 38.53 4.04
801 816 9.216117 TCGATGACGATGAGAAAATATAGTAGA 57.784 33.333 0.00 0.00 43.81 2.59
802 817 9.827411 CGATGACGATGAGAAAATATAGTAGAA 57.173 33.333 0.00 0.00 42.66 2.10
805 820 9.745880 TGACGATGAGAAAATATAGTAGAAACC 57.254 33.333 0.00 0.00 0.00 3.27
806 821 9.968870 GACGATGAGAAAATATAGTAGAAACCT 57.031 33.333 0.00 0.00 0.00 3.50
807 822 9.968870 ACGATGAGAAAATATAGTAGAAACCTC 57.031 33.333 0.00 0.00 0.00 3.85
808 823 9.413048 CGATGAGAAAATATAGTAGAAACCTCC 57.587 37.037 0.00 0.00 0.00 4.30
822 837 8.101419 AGTAGAAACCTCCTTATTTAACACTGG 58.899 37.037 0.00 0.00 0.00 4.00
823 838 5.710567 AGAAACCTCCTTATTTAACACTGGC 59.289 40.000 0.00 0.00 0.00 4.85
824 839 4.650972 ACCTCCTTATTTAACACTGGCA 57.349 40.909 0.00 0.00 0.00 4.92
825 840 4.993028 ACCTCCTTATTTAACACTGGCAA 58.007 39.130 0.00 0.00 0.00 4.52
826 841 5.390387 ACCTCCTTATTTAACACTGGCAAA 58.610 37.500 0.00 0.00 0.00 3.68
827 842 6.016555 ACCTCCTTATTTAACACTGGCAAAT 58.983 36.000 0.00 0.00 0.00 2.32
828 843 6.152831 ACCTCCTTATTTAACACTGGCAAATC 59.847 38.462 0.00 0.00 0.00 2.17
833 848 9.271828 CCTTATTTAACACTGGCAAATCTTTTT 57.728 29.630 0.00 0.00 0.00 1.94
874 891 0.755686 CCCATCTCCTCCTCTTTCCG 59.244 60.000 0.00 0.00 0.00 4.30
885 902 1.341581 CCTCTTTCCGTCCCTCTCTCT 60.342 57.143 0.00 0.00 0.00 3.10
886 903 2.021457 CTCTTTCCGTCCCTCTCTCTC 58.979 57.143 0.00 0.00 0.00 3.20
887 904 1.107945 CTTTCCGTCCCTCTCTCTCC 58.892 60.000 0.00 0.00 0.00 3.71
888 905 0.705253 TTTCCGTCCCTCTCTCTCCT 59.295 55.000 0.00 0.00 0.00 3.69
889 906 0.256464 TTCCGTCCCTCTCTCTCCTC 59.744 60.000 0.00 0.00 0.00 3.71
907 924 3.100671 CCTCCTATCCCCTTCTTATCCG 58.899 54.545 0.00 0.00 0.00 4.18
1137 1155 2.028925 TGCGAGCAGAGCGACAAA 59.971 55.556 0.00 0.00 37.44 2.83
1244 1262 3.201045 GCCCCCACTCTTATCTCTTTCTT 59.799 47.826 0.00 0.00 0.00 2.52
1250 1268 8.490311 CCCCACTCTTATCTCTTTCTTCTATTT 58.510 37.037 0.00 0.00 0.00 1.40
1262 1280 4.046938 TCTTCTATTTCCTAGTGCTGCG 57.953 45.455 0.00 0.00 0.00 5.18
1286 1304 7.570324 GCGATTCATATTCAGGAAAAGAGTAGC 60.570 40.741 0.00 0.00 0.00 3.58
1293 1311 5.016051 TCAGGAAAAGAGTAGCTATGCTG 57.984 43.478 0.00 0.51 40.10 4.41
1296 1314 5.751028 CAGGAAAAGAGTAGCTATGCTGTAC 59.249 44.000 0.00 0.00 40.10 2.90
1349 1367 5.393962 GTTCCTTTCAGTTTCATCAATCCG 58.606 41.667 0.00 0.00 0.00 4.18
1350 1368 3.440173 TCCTTTCAGTTTCATCAATCCGC 59.560 43.478 0.00 0.00 0.00 5.54
1351 1369 3.191162 CCTTTCAGTTTCATCAATCCGCA 59.809 43.478 0.00 0.00 0.00 5.69
1352 1370 4.142315 CCTTTCAGTTTCATCAATCCGCAT 60.142 41.667 0.00 0.00 0.00 4.73
1353 1371 5.066375 CCTTTCAGTTTCATCAATCCGCATA 59.934 40.000 0.00 0.00 0.00 3.14
1354 1372 6.404623 CCTTTCAGTTTCATCAATCCGCATAA 60.405 38.462 0.00 0.00 0.00 1.90
1355 1373 6.698008 TTCAGTTTCATCAATCCGCATAAT 57.302 33.333 0.00 0.00 0.00 1.28
1356 1374 6.698008 TCAGTTTCATCAATCCGCATAATT 57.302 33.333 0.00 0.00 0.00 1.40
1359 1377 9.500785 TCAGTTTCATCAATCCGCATAATTATA 57.499 29.630 0.00 0.00 0.00 0.98
1401 1419 5.812127 TCACATGTCACTATACAATGCTCAC 59.188 40.000 0.00 0.00 32.02 3.51
1403 1421 4.450082 TGTCACTATACAATGCTCACGT 57.550 40.909 0.00 0.00 0.00 4.49
1404 1422 5.570234 TGTCACTATACAATGCTCACGTA 57.430 39.130 0.00 0.00 0.00 3.57
1405 1423 5.578776 TGTCACTATACAATGCTCACGTAG 58.421 41.667 0.00 0.00 0.00 3.51
1406 1424 6.183360 ATGTCACTATACAATGCTCACGTAGT 60.183 38.462 0.00 0.00 34.57 2.73
1407 1425 6.316890 TGTCACTATACAATGCTCACGTAGTA 59.683 38.462 0.00 0.00 41.61 1.82
1409 1427 6.316890 TCACTATACAATGCTCACGTAGTACA 59.683 38.462 0.38 0.00 41.61 2.90
1430 1497 9.645059 AGTACATATGATGATACATACAACTGC 57.355 33.333 10.38 0.00 35.91 4.40
1445 1512 3.248266 CAACTGCCAAAATTAGCTGCTC 58.752 45.455 4.91 0.00 0.00 4.26
1464 1531 3.123621 GCTCATAGTTTGTGGTGAACGAG 59.876 47.826 0.00 0.00 32.38 4.18
1470 1537 3.139077 GTTTGTGGTGAACGAGGATTCT 58.861 45.455 0.00 0.00 0.00 2.40
1471 1538 2.455674 TGTGGTGAACGAGGATTCTG 57.544 50.000 0.00 0.00 0.00 3.02
1485 1552 6.889722 ACGAGGATTCTGGGAAATGAAATAAA 59.110 34.615 0.00 0.00 0.00 1.40
1486 1553 7.148069 ACGAGGATTCTGGGAAATGAAATAAAC 60.148 37.037 0.00 0.00 0.00 2.01
1487 1554 7.100458 AGGATTCTGGGAAATGAAATAAACG 57.900 36.000 0.00 0.00 0.00 3.60
1488 1555 6.889722 AGGATTCTGGGAAATGAAATAAACGA 59.110 34.615 0.00 0.00 0.00 3.85
1489 1556 7.396055 AGGATTCTGGGAAATGAAATAAACGAA 59.604 33.333 0.00 0.00 0.00 3.85
1490 1557 7.488150 GGATTCTGGGAAATGAAATAAACGAAC 59.512 37.037 0.00 0.00 0.00 3.95
1491 1558 6.885952 TCTGGGAAATGAAATAAACGAACA 57.114 33.333 0.00 0.00 0.00 3.18
1492 1559 6.908825 TCTGGGAAATGAAATAAACGAACAG 58.091 36.000 0.00 0.00 0.00 3.16
1493 1560 6.019779 TGGGAAATGAAATAAACGAACAGG 57.980 37.500 0.00 0.00 0.00 4.00
1494 1561 5.770663 TGGGAAATGAAATAAACGAACAGGA 59.229 36.000 0.00 0.00 0.00 3.86
1495 1562 6.072175 TGGGAAATGAAATAAACGAACAGGAG 60.072 38.462 0.00 0.00 0.00 3.69
1496 1563 6.072119 GGGAAATGAAATAAACGAACAGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
1497 1564 6.801862 GGAAATGAAATAAACGAACAGGAGTG 59.198 38.462 0.00 0.00 0.00 3.51
1498 1565 5.880054 ATGAAATAAACGAACAGGAGTGG 57.120 39.130 0.00 0.00 0.00 4.00
1499 1566 4.710324 TGAAATAAACGAACAGGAGTGGT 58.290 39.130 0.00 0.00 0.00 4.16
1500 1567 5.856156 TGAAATAAACGAACAGGAGTGGTA 58.144 37.500 0.00 0.00 0.00 3.25
1501 1568 5.697633 TGAAATAAACGAACAGGAGTGGTAC 59.302 40.000 0.00 0.00 0.00 3.34
1502 1569 5.479124 AATAAACGAACAGGAGTGGTACT 57.521 39.130 0.00 0.00 0.00 2.73
1503 1570 3.832615 AAACGAACAGGAGTGGTACTT 57.167 42.857 0.00 0.00 0.00 2.24
1504 1571 3.832615 AACGAACAGGAGTGGTACTTT 57.167 42.857 0.00 0.00 0.00 2.66
1505 1572 4.942761 AACGAACAGGAGTGGTACTTTA 57.057 40.909 0.00 0.00 0.00 1.85
1506 1573 4.248691 ACGAACAGGAGTGGTACTTTAC 57.751 45.455 0.00 0.00 0.00 2.01
1507 1574 3.240069 CGAACAGGAGTGGTACTTTACG 58.760 50.000 0.00 0.00 0.00 3.18
1508 1575 3.058016 CGAACAGGAGTGGTACTTTACGA 60.058 47.826 0.00 0.00 0.00 3.43
1509 1576 4.483311 GAACAGGAGTGGTACTTTACGAG 58.517 47.826 0.00 0.00 0.00 4.18
1510 1577 3.759581 ACAGGAGTGGTACTTTACGAGA 58.240 45.455 0.00 0.00 0.00 4.04
1511 1578 4.147321 ACAGGAGTGGTACTTTACGAGAA 58.853 43.478 0.00 0.00 0.00 2.87
1516 1583 7.275123 CAGGAGTGGTACTTTACGAGAATTAAC 59.725 40.741 0.00 0.00 0.00 2.01
1547 1614 8.682936 AATGAAGCTAATATGGTAGAAACTGG 57.317 34.615 0.00 0.00 0.00 4.00
1694 1780 1.270274 CATGGCTTGCTTGCTTGTGTA 59.730 47.619 1.96 0.00 0.00 2.90
1787 1873 0.839946 CATGGTACCCTAAGGCTGCT 59.160 55.000 10.07 0.00 36.11 4.24
1943 2029 3.239254 GGCTTTTGTTATTGTGGTACGC 58.761 45.455 0.00 0.00 40.62 4.42
1989 2077 3.846360 ACAGAATACCGTAGCAGTGTTC 58.154 45.455 0.00 0.00 36.07 3.18
2058 2146 3.381590 GCACCTAAACCCATCTTGATTCC 59.618 47.826 0.00 0.00 0.00 3.01
2108 2281 9.423061 GTTAATGTGGCTTTTCATTACAGAAAT 57.577 29.630 0.00 0.00 37.35 2.17
2114 2287 7.062255 GTGGCTTTTCATTACAGAAATTACTGC 59.938 37.037 0.00 0.00 41.06 4.40
2192 2365 4.953579 AGGTTGCTGTTTCTGGTAAAAAGA 59.046 37.500 0.00 0.00 0.00 2.52
2341 2514 3.137360 AGGGCAGGGTAAGAAATCATCTC 59.863 47.826 0.00 0.00 37.42 2.75
2366 2539 6.222038 TGGCATCTGTTAGTTCTTACCTAG 57.778 41.667 0.00 0.00 0.00 3.02
2403 2576 4.762289 ATTTTGTGTGCCCCAAAGTTTA 57.238 36.364 0.00 0.00 33.67 2.01
2404 2577 3.528597 TTTGTGTGCCCCAAAGTTTAC 57.471 42.857 0.00 0.00 0.00 2.01
2405 2578 1.404843 TGTGTGCCCCAAAGTTTACC 58.595 50.000 0.00 0.00 0.00 2.85
2512 2695 4.706962 ACCCAGTCCAAAATATTTGCTCTC 59.293 41.667 0.39 0.00 0.00 3.20
2526 2709 2.677199 TGCTCTCAACTTAAGTGCTCG 58.323 47.619 9.34 0.00 35.00 5.03
2567 2750 8.517878 CAAGTATTGGATTGTGTTCTCTGAAAT 58.482 33.333 0.00 0.00 43.94 2.17
2569 2752 6.906157 ATTGGATTGTGTTCTCTGAAATGT 57.094 33.333 0.00 0.00 0.00 2.71
2592 2778 9.717942 ATGTCCATGTTAGCTAGAAAATATCTC 57.282 33.333 0.00 0.00 39.71 2.75
2616 2824 4.686554 GTGTTACTCTCCTGTTAAGTGCTG 59.313 45.833 0.00 0.00 0.00 4.41
2671 2879 5.305386 TCTCTGTGATCTTCTCAACCTTTGA 59.695 40.000 0.00 0.00 35.07 2.69
2689 2897 0.671472 GAACCATTTTGCAGCTGGGC 60.671 55.000 17.12 1.74 34.21 5.36
2761 2969 1.028905 TGGCTCAAAAACCTGTTCCG 58.971 50.000 0.00 0.00 0.00 4.30
2819 3027 4.020662 GCTAGAGAACCCCTGGATATTGAG 60.021 50.000 0.00 0.00 0.00 3.02
3048 3256 0.389948 GTGGTGAGGTAGGCTCGTTG 60.390 60.000 0.00 0.00 0.00 4.10
3062 3270 2.285950 GCTCGTTGCAGTTTCGTACAAA 60.286 45.455 0.00 0.00 42.31 2.83
3063 3271 3.786161 GCTCGTTGCAGTTTCGTACAAAA 60.786 43.478 0.00 0.00 42.31 2.44
3064 3272 4.336101 CTCGTTGCAGTTTCGTACAAAAA 58.664 39.130 0.00 0.00 0.00 1.94
3065 3273 4.911053 TCGTTGCAGTTTCGTACAAAAAT 58.089 34.783 0.00 0.00 0.00 1.82
3066 3274 6.045698 TCGTTGCAGTTTCGTACAAAAATA 57.954 33.333 0.00 0.00 0.00 1.40
3067 3275 6.660722 TCGTTGCAGTTTCGTACAAAAATAT 58.339 32.000 0.00 0.00 0.00 1.28
3068 3276 6.575572 TCGTTGCAGTTTCGTACAAAAATATG 59.424 34.615 0.00 0.00 0.00 1.78
3069 3277 6.358558 CGTTGCAGTTTCGTACAAAAATATGT 59.641 34.615 0.00 0.00 37.32 2.29
3070 3278 7.096803 CGTTGCAGTTTCGTACAAAAATATGTT 60.097 33.333 0.00 0.00 34.75 2.71
3146 3354 2.048222 CCACGTGTCATCGCTGGT 60.048 61.111 15.65 0.00 32.12 4.00
3235 3443 6.720217 TTTTCTCCTTCCTTCCTTATCCTT 57.280 37.500 0.00 0.00 0.00 3.36
3299 3521 2.151266 TCCTCCATGGATCTCTCCTCT 58.849 52.381 16.63 0.00 42.59 3.69
3305 3527 3.433314 CCATGGATCTCTCCTCTTGTTGG 60.433 52.174 5.56 0.00 42.59 3.77
3310 3532 0.689623 CTCTCCTCTTGTTGGCCACT 59.310 55.000 3.88 0.00 0.00 4.00
3313 3535 1.151450 CCTCTTGTTGGCCACTGGT 59.849 57.895 3.88 0.00 0.00 4.00
3333 3555 1.064611 TCTCCGCTGCTACTAGGAACT 60.065 52.381 0.00 0.00 46.37 3.01
3378 3600 2.541233 ACCTCTCATCCACTAGTGCT 57.459 50.000 17.86 3.84 0.00 4.40
3403 3625 2.231215 AATTCGATGAGAGAAGCCCG 57.769 50.000 0.00 0.00 0.00 6.13
3559 3781 0.535780 CACCAGAAGCTGCAACCTCA 60.536 55.000 1.02 0.00 0.00 3.86
3560 3782 0.403271 ACCAGAAGCTGCAACCTCAT 59.597 50.000 1.02 0.00 0.00 2.90
3561 3783 1.093159 CCAGAAGCTGCAACCTCATC 58.907 55.000 1.02 0.00 0.00 2.92
3562 3784 0.725686 CAGAAGCTGCAACCTCATCG 59.274 55.000 1.02 0.00 0.00 3.84
3563 3785 1.023513 AGAAGCTGCAACCTCATCGC 61.024 55.000 1.02 0.00 0.00 4.58
3564 3786 2.301902 GAAGCTGCAACCTCATCGCG 62.302 60.000 0.00 0.00 0.00 5.87
3565 3787 3.869272 GCTGCAACCTCATCGCGG 61.869 66.667 6.13 0.00 35.06 6.46
3566 3788 3.197790 CTGCAACCTCATCGCGGG 61.198 66.667 6.13 0.89 0.00 6.13
3567 3789 4.776322 TGCAACCTCATCGCGGGG 62.776 66.667 6.13 6.53 0.00 5.73
3568 3790 4.467084 GCAACCTCATCGCGGGGA 62.467 66.667 6.13 2.99 0.00 4.81
3569 3791 2.202932 CAACCTCATCGCGGGGAG 60.203 66.667 17.45 17.45 0.00 4.30
3570 3792 4.162690 AACCTCATCGCGGGGAGC 62.163 66.667 18.55 0.00 43.95 4.70
3572 3794 4.598894 CCTCATCGCGGGGAGCTG 62.599 72.222 18.55 6.23 45.59 4.24
3580 3802 4.020617 CGGGGAGCTGCAACCTCA 62.021 66.667 7.79 0.00 0.00 3.86
3601 3823 4.020617 TGGGGAGCTGCAACCTCG 62.021 66.667 7.79 0.00 0.00 4.63
3609 3831 3.220999 CTGCAACCTCGTCGTGGGA 62.221 63.158 17.11 0.00 0.00 4.37
3614 3836 2.125912 CCTCGTCGTGGGAAGCTG 60.126 66.667 5.40 0.00 0.00 4.24
3621 3843 2.328099 CGTGGGAAGCTGCAACCTC 61.328 63.158 1.02 1.05 0.00 3.85
3622 3844 1.973812 GTGGGAAGCTGCAACCTCC 60.974 63.158 1.02 0.00 0.00 4.30
3623 3845 2.361737 GGGAAGCTGCAACCTCCC 60.362 66.667 8.04 8.04 0.00 4.30
3624 3846 2.747855 GGAAGCTGCAACCTCCCG 60.748 66.667 1.02 0.00 0.00 5.14
3625 3847 2.032681 GAAGCTGCAACCTCCCGT 59.967 61.111 1.02 0.00 0.00 5.28
3626 3848 2.032681 AAGCTGCAACCTCCCGTC 59.967 61.111 1.02 0.00 0.00 4.79
3628 3850 4.373116 GCTGCAACCTCCCGTCGA 62.373 66.667 0.00 0.00 0.00 4.20
3629 3851 2.432628 CTGCAACCTCCCGTCGAC 60.433 66.667 5.18 5.18 0.00 4.20
3633 3855 2.282040 AACCTCCCGTCGACGAGT 60.282 61.111 37.65 24.50 43.02 4.18
3635 3857 0.606401 AACCTCCCGTCGACGAGTTA 60.606 55.000 37.65 18.39 43.02 2.24
3636 3858 0.606401 ACCTCCCGTCGACGAGTTAA 60.606 55.000 37.65 16.69 43.02 2.01
3637 3859 0.737219 CCTCCCGTCGACGAGTTAAT 59.263 55.000 37.65 0.00 43.02 1.40
3638 3860 1.133790 CCTCCCGTCGACGAGTTAATT 59.866 52.381 37.65 0.00 43.02 1.40
3639 3861 2.182825 CTCCCGTCGACGAGTTAATTG 58.817 52.381 37.65 18.39 43.02 2.32
3641 3863 1.342555 CCGTCGACGAGTTAATTGCA 58.657 50.000 37.65 0.00 43.02 4.08
3643 3865 1.265732 CGTCGACGAGTTAATTGCACG 60.266 52.381 33.35 0.00 43.02 5.34
3645 3867 2.154389 GTCGACGAGTTAATTGCACGTT 59.846 45.455 0.00 0.00 37.32 3.99
3646 3868 2.154198 TCGACGAGTTAATTGCACGTTG 59.846 45.455 12.36 12.36 38.97 4.10
3647 3869 2.720590 CGACGAGTTAATTGCACGTTGG 60.721 50.000 11.37 4.53 37.32 3.77
3648 3870 2.215196 ACGAGTTAATTGCACGTTGGT 58.785 42.857 0.00 0.00 33.48 3.67
3651 3873 3.423907 CGAGTTAATTGCACGTTGGTACC 60.424 47.826 4.43 4.43 0.00 3.34
3652 3874 3.478509 AGTTAATTGCACGTTGGTACCA 58.521 40.909 11.60 11.60 0.00 3.25
3653 3875 3.251487 AGTTAATTGCACGTTGGTACCAC 59.749 43.478 16.04 9.21 0.00 4.16
3654 3876 1.681538 AATTGCACGTTGGTACCACA 58.318 45.000 16.04 6.02 0.00 4.17
3655 3877 0.948678 ATTGCACGTTGGTACCACAC 59.051 50.000 16.04 14.69 0.00 3.82
3656 3878 0.107606 TTGCACGTTGGTACCACACT 60.108 50.000 16.04 0.00 0.00 3.55
3657 3879 0.107606 TGCACGTTGGTACCACACTT 60.108 50.000 16.04 7.21 0.00 3.16
3658 3880 0.306533 GCACGTTGGTACCACACTTG 59.693 55.000 16.04 18.68 0.00 3.16
3659 3881 0.306533 CACGTTGGTACCACACTTGC 59.693 55.000 16.04 0.08 0.00 4.01
3660 3882 1.155424 ACGTTGGTACCACACTTGCG 61.155 55.000 16.04 14.10 0.00 4.85
3661 3883 1.281656 GTTGGTACCACACTTGCGC 59.718 57.895 16.04 0.00 0.00 6.09
3662 3884 1.153147 TTGGTACCACACTTGCGCA 60.153 52.632 16.04 5.66 0.00 6.09
3663 3885 1.440938 TTGGTACCACACTTGCGCAC 61.441 55.000 16.04 0.00 0.00 5.34
3664 3886 2.613506 GGTACCACACTTGCGCACC 61.614 63.158 11.12 0.00 0.00 5.01
3665 3887 1.597027 GTACCACACTTGCGCACCT 60.597 57.895 11.12 0.00 0.00 4.00
3666 3888 0.320073 GTACCACACTTGCGCACCTA 60.320 55.000 11.12 0.00 0.00 3.08
3667 3889 0.320073 TACCACACTTGCGCACCTAC 60.320 55.000 11.12 0.00 0.00 3.18
3668 3890 1.301716 CCACACTTGCGCACCTACT 60.302 57.895 11.12 0.00 0.00 2.57
3669 3891 1.291877 CCACACTTGCGCACCTACTC 61.292 60.000 11.12 0.00 0.00 2.59
3670 3892 0.599991 CACACTTGCGCACCTACTCA 60.600 55.000 11.12 0.00 0.00 3.41
3671 3893 0.600255 ACACTTGCGCACCTACTCAC 60.600 55.000 11.12 0.00 0.00 3.51
3672 3894 1.372997 ACTTGCGCACCTACTCACG 60.373 57.895 11.12 0.00 0.00 4.35
3673 3895 1.080772 CTTGCGCACCTACTCACGA 60.081 57.895 11.12 0.00 0.00 4.35
3674 3896 1.073216 CTTGCGCACCTACTCACGAG 61.073 60.000 11.12 0.00 0.00 4.18
3675 3897 1.802337 TTGCGCACCTACTCACGAGT 61.802 55.000 11.12 4.87 45.02 4.18
3676 3898 1.514443 GCGCACCTACTCACGAGTC 60.514 63.158 0.30 0.00 42.54 3.36
3677 3899 1.873863 CGCACCTACTCACGAGTCA 59.126 57.895 2.26 0.00 42.54 3.41
3678 3900 0.240145 CGCACCTACTCACGAGTCAA 59.760 55.000 2.26 0.00 42.54 3.18
3679 3901 1.135373 CGCACCTACTCACGAGTCAAT 60.135 52.381 2.26 0.00 42.54 2.57
3680 3902 2.096980 CGCACCTACTCACGAGTCAATA 59.903 50.000 2.26 0.00 42.54 1.90
3681 3903 3.436496 GCACCTACTCACGAGTCAATAC 58.564 50.000 2.26 0.00 42.54 1.89
3682 3904 3.734293 GCACCTACTCACGAGTCAATACC 60.734 52.174 2.26 0.00 42.54 2.73
3683 3905 3.442625 CACCTACTCACGAGTCAATACCA 59.557 47.826 2.26 0.00 42.54 3.25
3684 3906 4.098044 CACCTACTCACGAGTCAATACCAT 59.902 45.833 2.26 0.00 42.54 3.55
3685 3907 4.710375 ACCTACTCACGAGTCAATACCATT 59.290 41.667 2.26 0.00 42.54 3.16
3686 3908 5.043903 CCTACTCACGAGTCAATACCATTG 58.956 45.833 2.26 0.00 42.54 2.82
3687 3909 4.537135 ACTCACGAGTCAATACCATTGT 57.463 40.909 0.00 0.00 36.92 2.71
3688 3910 4.894784 ACTCACGAGTCAATACCATTGTT 58.105 39.130 0.00 0.00 36.92 2.83
3689 3911 4.929808 ACTCACGAGTCAATACCATTGTTC 59.070 41.667 0.00 0.00 36.92 3.18
3690 3912 3.924073 TCACGAGTCAATACCATTGTTCG 59.076 43.478 18.01 18.01 35.48 3.95
3691 3913 3.678072 CACGAGTCAATACCATTGTTCGT 59.322 43.478 18.83 18.83 39.39 3.85
3692 3914 3.678072 ACGAGTCAATACCATTGTTCGTG 59.322 43.478 21.39 9.39 38.38 4.35
3693 3915 3.483574 CGAGTCAATACCATTGTTCGTGC 60.484 47.826 14.46 0.00 0.00 5.34
3694 3916 3.407698 AGTCAATACCATTGTTCGTGCA 58.592 40.909 0.00 0.00 0.00 4.57
3695 3917 4.009675 AGTCAATACCATTGTTCGTGCAT 58.990 39.130 0.00 0.00 0.00 3.96
3696 3918 4.097714 GTCAATACCATTGTTCGTGCATG 58.902 43.478 0.00 0.00 0.00 4.06
3697 3919 3.755905 TCAATACCATTGTTCGTGCATGT 59.244 39.130 5.68 0.00 0.00 3.21
3698 3920 4.097714 CAATACCATTGTTCGTGCATGTC 58.902 43.478 5.68 1.60 0.00 3.06
3699 3921 1.603456 ACCATTGTTCGTGCATGTCA 58.397 45.000 5.68 4.27 0.00 3.58
3700 3922 2.161855 ACCATTGTTCGTGCATGTCAT 58.838 42.857 5.68 0.00 0.00 3.06
3701 3923 3.342719 ACCATTGTTCGTGCATGTCATA 58.657 40.909 5.68 0.08 0.00 2.15
3702 3924 3.374988 ACCATTGTTCGTGCATGTCATAG 59.625 43.478 5.68 3.32 0.00 2.23
3703 3925 3.374988 CCATTGTTCGTGCATGTCATAGT 59.625 43.478 5.68 0.00 0.00 2.12
3704 3926 4.142622 CCATTGTTCGTGCATGTCATAGTT 60.143 41.667 5.68 0.00 0.00 2.24
3705 3927 4.661993 TTGTTCGTGCATGTCATAGTTC 57.338 40.909 5.68 0.00 0.00 3.01
3706 3928 3.658709 TGTTCGTGCATGTCATAGTTCA 58.341 40.909 5.68 0.00 0.00 3.18
3707 3929 3.679502 TGTTCGTGCATGTCATAGTTCAG 59.320 43.478 5.68 0.00 0.00 3.02
3708 3930 3.592898 TCGTGCATGTCATAGTTCAGT 57.407 42.857 5.68 0.00 0.00 3.41
3709 3931 4.712122 TCGTGCATGTCATAGTTCAGTA 57.288 40.909 5.68 0.00 0.00 2.74
3710 3932 4.421058 TCGTGCATGTCATAGTTCAGTAC 58.579 43.478 5.68 0.00 0.00 2.73
3711 3933 3.551890 CGTGCATGTCATAGTTCAGTACC 59.448 47.826 0.00 0.00 0.00 3.34
3712 3934 4.503910 GTGCATGTCATAGTTCAGTACCA 58.496 43.478 0.00 0.00 0.00 3.25
3713 3935 4.330074 GTGCATGTCATAGTTCAGTACCAC 59.670 45.833 0.00 0.00 0.00 4.16
3714 3936 4.222810 TGCATGTCATAGTTCAGTACCACT 59.777 41.667 0.00 0.00 0.00 4.00
3715 3937 5.420739 TGCATGTCATAGTTCAGTACCACTA 59.579 40.000 0.00 0.00 0.00 2.74
3716 3938 6.098266 TGCATGTCATAGTTCAGTACCACTAT 59.902 38.462 0.00 4.76 36.78 2.12
3717 3939 6.986817 GCATGTCATAGTTCAGTACCACTATT 59.013 38.462 7.08 0.00 34.55 1.73
3718 3940 7.169982 GCATGTCATAGTTCAGTACCACTATTC 59.830 40.741 7.08 5.49 34.55 1.75
3719 3941 6.792326 TGTCATAGTTCAGTACCACTATTCG 58.208 40.000 7.08 0.47 34.55 3.34
3720 3942 6.183360 TGTCATAGTTCAGTACCACTATTCGG 60.183 42.308 7.08 0.00 34.55 4.30
3721 3943 5.889853 TCATAGTTCAGTACCACTATTCGGT 59.110 40.000 7.08 0.00 34.55 4.69
3722 3944 4.715527 AGTTCAGTACCACTATTCGGTC 57.284 45.455 0.00 0.00 37.99 4.79
3723 3945 4.342359 AGTTCAGTACCACTATTCGGTCT 58.658 43.478 0.00 0.00 37.99 3.85
3724 3946 5.503927 AGTTCAGTACCACTATTCGGTCTA 58.496 41.667 0.00 0.00 37.99 2.59
3725 3947 5.948162 AGTTCAGTACCACTATTCGGTCTAA 59.052 40.000 0.00 0.00 37.99 2.10
3726 3948 5.824904 TCAGTACCACTATTCGGTCTAAC 57.175 43.478 0.00 0.00 37.99 2.34
3727 3949 5.503927 TCAGTACCACTATTCGGTCTAACT 58.496 41.667 0.00 0.00 37.99 2.24
3728 3950 5.356190 TCAGTACCACTATTCGGTCTAACTG 59.644 44.000 0.00 0.00 40.03 3.16
3729 3951 5.125097 CAGTACCACTATTCGGTCTAACTGT 59.875 44.000 0.00 0.00 36.51 3.55
3730 3952 5.713861 AGTACCACTATTCGGTCTAACTGTT 59.286 40.000 0.00 0.00 37.99 3.16
3731 3953 6.886459 AGTACCACTATTCGGTCTAACTGTTA 59.114 38.462 0.00 0.00 37.99 2.41
3732 3954 5.958955 ACCACTATTCGGTCTAACTGTTAC 58.041 41.667 0.00 0.00 27.30 2.50
3733 3955 5.477984 ACCACTATTCGGTCTAACTGTTACA 59.522 40.000 0.00 0.00 27.30 2.41
3734 3956 6.015180 ACCACTATTCGGTCTAACTGTTACAA 60.015 38.462 0.00 0.00 27.30 2.41
3735 3957 6.869913 CCACTATTCGGTCTAACTGTTACAAA 59.130 38.462 0.00 0.00 0.00 2.83
3736 3958 7.385752 CCACTATTCGGTCTAACTGTTACAAAA 59.614 37.037 0.00 0.00 0.00 2.44
3737 3959 8.932791 CACTATTCGGTCTAACTGTTACAAAAT 58.067 33.333 0.00 0.00 0.00 1.82
3738 3960 8.932791 ACTATTCGGTCTAACTGTTACAAAATG 58.067 33.333 0.00 0.00 0.00 2.32
3739 3961 6.548441 TTCGGTCTAACTGTTACAAAATGG 57.452 37.500 0.00 0.00 0.00 3.16
3740 3962 5.856156 TCGGTCTAACTGTTACAAAATGGA 58.144 37.500 0.00 0.00 0.00 3.41
3741 3963 5.697633 TCGGTCTAACTGTTACAAAATGGAC 59.302 40.000 0.00 1.39 0.00 4.02
3742 3964 5.699458 CGGTCTAACTGTTACAAAATGGACT 59.301 40.000 11.27 0.00 0.00 3.85
3743 3965 6.347402 CGGTCTAACTGTTACAAAATGGACTG 60.347 42.308 11.27 9.53 0.00 3.51
3744 3966 6.708949 GGTCTAACTGTTACAAAATGGACTGA 59.291 38.462 11.27 0.00 0.00 3.41
3745 3967 7.307811 GGTCTAACTGTTACAAAATGGACTGAC 60.308 40.741 11.27 6.68 0.00 3.51
3746 3968 7.225931 GTCTAACTGTTACAAAATGGACTGACA 59.774 37.037 0.00 0.00 0.00 3.58
3747 3969 6.377327 AACTGTTACAAAATGGACTGACAG 57.623 37.500 0.00 0.00 39.21 3.51
3748 3970 4.275936 ACTGTTACAAAATGGACTGACAGC 59.724 41.667 1.25 0.00 37.39 4.40
3749 3971 3.568007 TGTTACAAAATGGACTGACAGCC 59.432 43.478 1.25 5.69 0.00 4.85
3750 3972 1.238439 ACAAAATGGACTGACAGCCG 58.762 50.000 1.25 0.00 0.00 5.52
3751 3973 1.238439 CAAAATGGACTGACAGCCGT 58.762 50.000 1.25 3.67 0.00 5.68
3752 3974 2.224426 ACAAAATGGACTGACAGCCGTA 60.224 45.455 1.25 0.00 0.00 4.02
3753 3975 3.009723 CAAAATGGACTGACAGCCGTAT 58.990 45.455 1.25 0.00 0.00 3.06
3754 3976 4.188462 CAAAATGGACTGACAGCCGTATA 58.812 43.478 1.25 0.00 0.00 1.47
3755 3977 4.481368 AAATGGACTGACAGCCGTATAA 57.519 40.909 1.25 0.00 0.00 0.98
3756 3978 3.735237 ATGGACTGACAGCCGTATAAG 57.265 47.619 1.25 0.00 0.00 1.73
3757 3979 2.453521 TGGACTGACAGCCGTATAAGT 58.546 47.619 1.25 0.00 0.00 2.24
3758 3980 2.165641 TGGACTGACAGCCGTATAAGTG 59.834 50.000 1.25 0.00 0.00 3.16
3759 3981 2.165845 GGACTGACAGCCGTATAAGTGT 59.834 50.000 1.25 0.00 0.00 3.55
3760 3982 3.179830 GACTGACAGCCGTATAAGTGTG 58.820 50.000 1.25 0.00 0.00 3.82
3761 3983 2.561419 ACTGACAGCCGTATAAGTGTGT 59.439 45.455 1.25 0.00 0.00 3.72
3762 3984 3.760151 ACTGACAGCCGTATAAGTGTGTA 59.240 43.478 1.25 0.00 0.00 2.90
3763 3985 4.401519 ACTGACAGCCGTATAAGTGTGTAT 59.598 41.667 1.25 0.00 0.00 2.29
3764 3986 5.105473 ACTGACAGCCGTATAAGTGTGTATT 60.105 40.000 1.25 0.00 0.00 1.89
3765 3987 5.106442 TGACAGCCGTATAAGTGTGTATTG 58.894 41.667 0.00 0.00 0.00 1.90
3766 3988 5.105675 TGACAGCCGTATAAGTGTGTATTGA 60.106 40.000 0.00 0.00 0.00 2.57
3767 3989 5.107133 ACAGCCGTATAAGTGTGTATTGAC 58.893 41.667 0.00 0.00 0.00 3.18
3768 3990 4.506654 CAGCCGTATAAGTGTGTATTGACC 59.493 45.833 0.00 0.00 0.00 4.02
3769 3991 4.160814 AGCCGTATAAGTGTGTATTGACCA 59.839 41.667 0.00 0.00 0.00 4.02
3770 3992 5.054477 GCCGTATAAGTGTGTATTGACCAT 58.946 41.667 0.00 0.00 0.00 3.55
3771 3993 5.050363 GCCGTATAAGTGTGTATTGACCATG 60.050 44.000 0.00 0.00 0.00 3.66
3772 3994 6.046593 CCGTATAAGTGTGTATTGACCATGT 58.953 40.000 0.00 0.00 0.00 3.21
3773 3995 7.204604 CCGTATAAGTGTGTATTGACCATGTA 58.795 38.462 0.00 0.00 0.00 2.29
3774 3996 7.870954 CCGTATAAGTGTGTATTGACCATGTAT 59.129 37.037 0.00 0.00 0.00 2.29
3775 3997 8.912658 CGTATAAGTGTGTATTGACCATGTATC 58.087 37.037 0.00 0.00 0.00 2.24
3776 3998 9.982651 GTATAAGTGTGTATTGACCATGTATCT 57.017 33.333 0.00 0.00 0.00 1.98
3777 3999 8.893219 ATAAGTGTGTATTGACCATGTATCTG 57.107 34.615 0.00 0.00 0.00 2.90
3778 4000 6.544928 AGTGTGTATTGACCATGTATCTGA 57.455 37.500 0.00 0.00 0.00 3.27
3779 4001 6.341316 AGTGTGTATTGACCATGTATCTGAC 58.659 40.000 0.00 0.00 0.00 3.51
3780 4002 6.070824 AGTGTGTATTGACCATGTATCTGACA 60.071 38.462 0.00 0.00 43.97 3.58
3781 4003 6.256539 GTGTGTATTGACCATGTATCTGACAG 59.743 42.308 0.00 0.00 42.79 3.51
3782 4004 6.154363 TGTGTATTGACCATGTATCTGACAGA 59.846 38.462 7.80 7.80 42.79 3.41
3783 4005 6.477033 GTGTATTGACCATGTATCTGACAGAC 59.523 42.308 7.47 0.00 42.79 3.51
3784 4006 4.471904 TTGACCATGTATCTGACAGACC 57.528 45.455 7.47 2.09 42.79 3.85
3785 4007 2.427095 TGACCATGTATCTGACAGACCG 59.573 50.000 7.47 0.00 42.79 4.79
3786 4008 1.757118 ACCATGTATCTGACAGACCGG 59.243 52.381 7.47 0.00 42.79 5.28
3787 4009 1.069204 CCATGTATCTGACAGACCGGG 59.931 57.143 7.47 1.91 42.79 5.73
3788 4010 0.753262 ATGTATCTGACAGACCGGGC 59.247 55.000 7.47 0.52 42.79 6.13
3789 4011 1.327690 TGTATCTGACAGACCGGGCC 61.328 60.000 1.76 0.00 32.86 5.80
3790 4012 1.760875 TATCTGACAGACCGGGCCC 60.761 63.158 13.57 13.57 0.00 5.80
3791 4013 2.523740 TATCTGACAGACCGGGCCCA 62.524 60.000 24.92 0.00 0.00 5.36
3792 4014 4.394712 CTGACAGACCGGGCCCAC 62.395 72.222 24.92 12.70 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.692625 CCTCGTTGAGACATGTTCTTGATT 59.307 41.667 0.00 0.00 33.22 2.57
85 86 3.057315 CAGAAATGCACCATCGGTTTCTT 60.057 43.478 6.49 0.00 37.10 2.52
251 252 9.730420 AAATATAAGGTGCGTTTTAATGATCAC 57.270 29.630 0.00 0.00 0.00 3.06
379 380 5.218885 CGGTGAAACTTGACATGCATAAAA 58.781 37.500 0.00 0.00 36.74 1.52
439 442 5.702670 GTGGCTTATGAGTGTATGCATATGT 59.297 40.000 10.16 0.00 0.00 2.29
776 791 9.827411 TTCTACTATATTTTCTCATCGTCATCG 57.173 33.333 0.00 0.00 38.55 3.84
779 794 9.745880 GGTTTCTACTATATTTTCTCATCGTCA 57.254 33.333 0.00 0.00 0.00 4.35
780 795 9.968870 AGGTTTCTACTATATTTTCTCATCGTC 57.031 33.333 0.00 0.00 0.00 4.20
781 796 9.968870 GAGGTTTCTACTATATTTTCTCATCGT 57.031 33.333 0.00 0.00 0.00 3.73
782 797 9.413048 GGAGGTTTCTACTATATTTTCTCATCG 57.587 37.037 0.00 0.00 0.00 3.84
796 811 8.101419 CCAGTGTTAAATAAGGAGGTTTCTACT 58.899 37.037 0.00 0.00 35.15 2.57
797 812 7.148289 GCCAGTGTTAAATAAGGAGGTTTCTAC 60.148 40.741 0.00 0.00 0.00 2.59
798 813 6.882678 GCCAGTGTTAAATAAGGAGGTTTCTA 59.117 38.462 0.00 0.00 0.00 2.10
799 814 5.710567 GCCAGTGTTAAATAAGGAGGTTTCT 59.289 40.000 0.00 0.00 0.00 2.52
800 815 5.475564 TGCCAGTGTTAAATAAGGAGGTTTC 59.524 40.000 0.00 0.00 0.00 2.78
801 816 5.390387 TGCCAGTGTTAAATAAGGAGGTTT 58.610 37.500 0.00 0.00 0.00 3.27
802 817 4.993028 TGCCAGTGTTAAATAAGGAGGTT 58.007 39.130 0.00 0.00 0.00 3.50
803 818 4.650972 TGCCAGTGTTAAATAAGGAGGT 57.349 40.909 0.00 0.00 0.00 3.85
804 819 5.975693 TTTGCCAGTGTTAAATAAGGAGG 57.024 39.130 0.00 0.00 0.00 4.30
805 820 7.396540 AGATTTGCCAGTGTTAAATAAGGAG 57.603 36.000 2.82 0.00 0.00 3.69
806 821 7.775053 AAGATTTGCCAGTGTTAAATAAGGA 57.225 32.000 2.82 0.00 0.00 3.36
807 822 8.831715 AAAAGATTTGCCAGTGTTAAATAAGG 57.168 30.769 2.82 0.00 0.00 2.69
811 826 8.829612 CAAGAAAAAGATTTGCCAGTGTTAAAT 58.170 29.630 2.51 2.51 0.00 1.40
812 827 7.279758 CCAAGAAAAAGATTTGCCAGTGTTAAA 59.720 33.333 0.00 0.00 0.00 1.52
813 828 6.760770 CCAAGAAAAAGATTTGCCAGTGTTAA 59.239 34.615 0.00 0.00 0.00 2.01
814 829 6.097554 TCCAAGAAAAAGATTTGCCAGTGTTA 59.902 34.615 0.00 0.00 0.00 2.41
815 830 5.104982 TCCAAGAAAAAGATTTGCCAGTGTT 60.105 36.000 0.00 0.00 0.00 3.32
816 831 4.405358 TCCAAGAAAAAGATTTGCCAGTGT 59.595 37.500 0.00 0.00 0.00 3.55
817 832 4.947645 TCCAAGAAAAAGATTTGCCAGTG 58.052 39.130 0.00 0.00 0.00 3.66
818 833 5.604565 CTTCCAAGAAAAAGATTTGCCAGT 58.395 37.500 0.00 0.00 0.00 4.00
819 834 4.450080 GCTTCCAAGAAAAAGATTTGCCAG 59.550 41.667 0.00 0.00 0.00 4.85
820 835 4.379652 GCTTCCAAGAAAAAGATTTGCCA 58.620 39.130 0.00 0.00 0.00 4.92
821 836 3.748048 GGCTTCCAAGAAAAAGATTTGCC 59.252 43.478 0.00 0.00 0.00 4.52
822 837 3.748048 GGGCTTCCAAGAAAAAGATTTGC 59.252 43.478 0.00 0.00 0.00 3.68
823 838 4.959723 TGGGCTTCCAAGAAAAAGATTTG 58.040 39.130 0.00 0.00 37.67 2.32
824 839 5.307716 TCATGGGCTTCCAAGAAAAAGATTT 59.692 36.000 0.00 0.00 44.86 2.17
825 840 4.840115 TCATGGGCTTCCAAGAAAAAGATT 59.160 37.500 0.00 0.00 44.86 2.40
826 841 4.419282 TCATGGGCTTCCAAGAAAAAGAT 58.581 39.130 0.00 0.00 44.86 2.40
827 842 3.828451 CTCATGGGCTTCCAAGAAAAAGA 59.172 43.478 0.00 0.00 44.86 2.52
828 843 3.615834 GCTCATGGGCTTCCAAGAAAAAG 60.616 47.826 11.30 0.00 44.86 2.27
833 848 0.405198 TTGCTCATGGGCTTCCAAGA 59.595 50.000 20.42 0.00 44.86 3.02
874 891 2.041216 GGATAGGAGGAGAGAGAGGGAC 59.959 59.091 0.00 0.00 0.00 4.46
885 902 3.245658 CGGATAAGAAGGGGATAGGAGGA 60.246 52.174 0.00 0.00 0.00 3.71
886 903 3.100671 CGGATAAGAAGGGGATAGGAGG 58.899 54.545 0.00 0.00 0.00 4.30
887 904 2.498078 GCGGATAAGAAGGGGATAGGAG 59.502 54.545 0.00 0.00 0.00 3.69
888 905 2.111972 AGCGGATAAGAAGGGGATAGGA 59.888 50.000 0.00 0.00 0.00 2.94
889 906 2.541466 AGCGGATAAGAAGGGGATAGG 58.459 52.381 0.00 0.00 0.00 2.57
907 924 4.475135 GGCGGGGAGAGTGGAAGC 62.475 72.222 0.00 0.00 0.00 3.86
933 950 1.533625 CCACTGGCATTTCCTTTCGA 58.466 50.000 0.00 0.00 35.26 3.71
1244 1262 4.099419 TGAATCGCAGCACTAGGAAATAGA 59.901 41.667 0.00 0.00 35.30 1.98
1250 1268 4.039124 TGAATATGAATCGCAGCACTAGGA 59.961 41.667 0.00 0.00 0.00 2.94
1262 1280 8.900983 AGCTACTCTTTTCCTGAATATGAATC 57.099 34.615 0.00 0.00 0.00 2.52
1404 1422 9.645059 GCAGTTGTATGTATCATCATATGTACT 57.355 33.333 1.90 0.00 33.68 2.73
1405 1423 8.873830 GGCAGTTGTATGTATCATCATATGTAC 58.126 37.037 1.90 0.00 33.68 2.90
1406 1424 8.592809 TGGCAGTTGTATGTATCATCATATGTA 58.407 33.333 1.90 0.00 33.68 2.29
1407 1425 7.452562 TGGCAGTTGTATGTATCATCATATGT 58.547 34.615 1.90 0.00 33.68 2.29
1409 1427 8.922931 TTTGGCAGTTGTATGTATCATCATAT 57.077 30.769 0.00 0.00 33.68 1.78
1424 1491 3.248266 GAGCAGCTAATTTTGGCAGTTG 58.752 45.455 0.00 0.00 37.10 3.16
1430 1497 6.529125 CACAAACTATGAGCAGCTAATTTTGG 59.471 38.462 16.64 4.89 0.00 3.28
1445 1512 3.659786 TCCTCGTTCACCACAAACTATG 58.340 45.455 0.00 0.00 0.00 2.23
1464 1531 7.095695 TCGTTTATTTCATTTCCCAGAATCC 57.904 36.000 0.00 0.00 0.00 3.01
1470 1537 5.770663 TCCTGTTCGTTTATTTCATTTCCCA 59.229 36.000 0.00 0.00 0.00 4.37
1471 1538 6.072119 ACTCCTGTTCGTTTATTTCATTTCCC 60.072 38.462 0.00 0.00 0.00 3.97
1485 1552 3.304928 CGTAAAGTACCACTCCTGTTCGT 60.305 47.826 0.00 0.00 0.00 3.85
1486 1553 3.058016 TCGTAAAGTACCACTCCTGTTCG 60.058 47.826 0.00 0.00 0.00 3.95
1487 1554 4.217118 TCTCGTAAAGTACCACTCCTGTTC 59.783 45.833 0.00 0.00 0.00 3.18
1488 1555 4.147321 TCTCGTAAAGTACCACTCCTGTT 58.853 43.478 0.00 0.00 0.00 3.16
1489 1556 3.759581 TCTCGTAAAGTACCACTCCTGT 58.240 45.455 0.00 0.00 0.00 4.00
1490 1557 4.778534 TTCTCGTAAAGTACCACTCCTG 57.221 45.455 0.00 0.00 0.00 3.86
1491 1558 5.997384 AATTCTCGTAAAGTACCACTCCT 57.003 39.130 0.00 0.00 0.00 3.69
1492 1559 7.062722 GTGTTAATTCTCGTAAAGTACCACTCC 59.937 40.741 0.00 0.00 0.00 3.85
1493 1560 7.596248 TGTGTTAATTCTCGTAAAGTACCACTC 59.404 37.037 8.26 0.00 27.80 3.51
1494 1561 7.436118 TGTGTTAATTCTCGTAAAGTACCACT 58.564 34.615 8.26 0.00 27.80 4.00
1495 1562 7.642071 TGTGTTAATTCTCGTAAAGTACCAC 57.358 36.000 0.00 2.59 0.00 4.16
1496 1563 8.143193 TCTTGTGTTAATTCTCGTAAAGTACCA 58.857 33.333 0.00 0.00 0.00 3.25
1497 1564 8.524870 TCTTGTGTTAATTCTCGTAAAGTACC 57.475 34.615 0.00 0.00 0.00 3.34
1500 1567 9.268268 TCATTCTTGTGTTAATTCTCGTAAAGT 57.732 29.630 0.00 0.00 0.00 2.66
1503 1570 8.227791 GCTTCATTCTTGTGTTAATTCTCGTAA 58.772 33.333 0.00 0.00 0.00 3.18
1504 1571 7.602644 AGCTTCATTCTTGTGTTAATTCTCGTA 59.397 33.333 0.00 0.00 0.00 3.43
1505 1572 6.428159 AGCTTCATTCTTGTGTTAATTCTCGT 59.572 34.615 0.00 0.00 0.00 4.18
1506 1573 6.835914 AGCTTCATTCTTGTGTTAATTCTCG 58.164 36.000 0.00 0.00 0.00 4.04
1516 1583 8.893219 TCTACCATATTAGCTTCATTCTTGTG 57.107 34.615 0.00 0.00 0.00 3.33
1524 1591 7.195374 ACCAGTTTCTACCATATTAGCTTCA 57.805 36.000 0.00 0.00 0.00 3.02
1544 1611 6.627395 TGTTTACCAGATGTAACAAACCAG 57.373 37.500 0.00 0.00 39.13 4.00
1545 1612 7.406031 TTTGTTTACCAGATGTAACAAACCA 57.594 32.000 0.00 0.00 39.13 3.67
1547 1614 7.358023 CGCATTTGTTTACCAGATGTAACAAAC 60.358 37.037 12.47 3.21 39.86 2.93
1694 1780 4.947388 AGAAAAGGTTACACACACACACAT 59.053 37.500 0.00 0.00 0.00 3.21
1787 1873 4.093998 GTCTTCTCGGTAGTTACGTGATCA 59.906 45.833 0.00 0.00 34.43 2.92
1943 2029 4.312443 ACACCATACAAACTACTTCGGTG 58.688 43.478 0.00 0.00 46.41 4.94
2091 2262 7.594758 TGTGCAGTAATTTCTGTAATGAAAAGC 59.405 33.333 12.93 0.00 39.08 3.51
2114 2287 3.063588 CAGTATGTCAGCTCAGCAATGTG 59.936 47.826 0.00 0.00 0.00 3.21
2192 2365 5.627968 GCCTTTTATAGAGCTTCTGTGACCT 60.628 44.000 0.00 0.00 0.00 3.85
2341 2514 5.491982 AGGTAAGAACTAACAGATGCCAAG 58.508 41.667 0.00 0.00 0.00 3.61
2366 2539 4.685628 CACAAAATACCTGATGCAACCAAC 59.314 41.667 0.00 0.00 0.00 3.77
2512 2695 2.673368 GGTCATCCGAGCACTTAAGTTG 59.327 50.000 5.07 0.00 39.53 3.16
2526 2709 0.252197 ACTTGTTAGCCGGGTCATCC 59.748 55.000 10.79 0.00 0.00 3.51
2567 2750 7.867909 CGAGATATTTTCTAGCTAACATGGACA 59.132 37.037 0.00 0.00 33.74 4.02
2569 2752 7.867909 CACGAGATATTTTCTAGCTAACATGGA 59.132 37.037 0.00 0.00 33.74 3.41
2592 2778 3.673809 GCACTTAACAGGAGAGTAACACG 59.326 47.826 0.00 0.00 0.00 4.49
2616 2824 3.643159 ATTTGGCGAACTGAGAAAACC 57.357 42.857 0.00 0.00 0.00 3.27
2671 2879 1.372307 GCCCAGCTGCAAAATGGTT 59.628 52.632 8.66 0.00 31.85 3.67
2689 2897 5.677319 TGAGGTGGGTAAATAGTCTTCTG 57.323 43.478 0.00 0.00 0.00 3.02
2761 2969 1.471684 CTTTTGTCTCTGATGGGCAGC 59.528 52.381 0.00 0.00 44.52 5.25
2819 3027 2.851534 GCACGGTTGCTGTATCTTTTC 58.148 47.619 0.00 0.00 46.17 2.29
2984 3192 7.591006 CAAAACTCAGATTTTGGATTCCATG 57.409 36.000 6.15 1.41 43.07 3.66
3048 3256 8.019094 ACCTAACATATTTTTGTACGAAACTGC 58.981 33.333 7.83 0.00 0.00 4.40
3063 3271 9.315363 TGTTCCCAAACATTTACCTAACATATT 57.685 29.630 0.00 0.00 40.45 1.28
3064 3272 8.887264 TGTTCCCAAACATTTACCTAACATAT 57.113 30.769 0.00 0.00 40.45 1.78
3065 3273 7.094118 GCTGTTCCCAAACATTTACCTAACATA 60.094 37.037 0.00 0.00 44.18 2.29
3066 3274 6.295067 GCTGTTCCCAAACATTTACCTAACAT 60.295 38.462 0.00 0.00 44.18 2.71
3067 3275 5.010213 GCTGTTCCCAAACATTTACCTAACA 59.990 40.000 0.00 0.00 44.18 2.41
3068 3276 5.466819 GCTGTTCCCAAACATTTACCTAAC 58.533 41.667 0.00 0.00 44.18 2.34
3069 3277 4.216687 CGCTGTTCCCAAACATTTACCTAA 59.783 41.667 0.00 0.00 44.18 2.69
3070 3278 3.754323 CGCTGTTCCCAAACATTTACCTA 59.246 43.478 0.00 0.00 44.18 3.08
3128 3336 2.048222 CCAGCGATGACACGTGGT 60.048 61.111 21.57 5.35 33.42 4.16
3172 3380 1.561643 TGGGCCACACAAAGAAAACA 58.438 45.000 0.00 0.00 0.00 2.83
3235 3443 2.761208 GAGAGAGAATGACGGGAGGAAA 59.239 50.000 0.00 0.00 0.00 3.13
3299 3521 1.150536 GGAGACCAGTGGCCAACAA 59.849 57.895 7.24 0.00 0.00 2.83
3310 3532 0.752009 CCTAGTAGCAGCGGAGACCA 60.752 60.000 0.00 0.00 0.00 4.02
3313 3535 1.064611 AGTTCCTAGTAGCAGCGGAGA 60.065 52.381 0.00 0.00 0.00 3.71
3353 3575 0.266152 AGTGGATGAGAGGTAGGGGG 59.734 60.000 0.00 0.00 0.00 5.40
3378 3600 5.354234 GGGCTTCTCTCATCGAATTACAAAA 59.646 40.000 0.00 0.00 0.00 2.44
3487 3709 0.980423 AGAGGAGGTGGAAGAAGCAC 59.020 55.000 0.00 0.00 0.00 4.40
3563 3785 3.335356 ATGAGGTTGCAGCTCCCCG 62.335 63.158 0.00 0.00 41.77 5.73
3564 3786 1.452833 GATGAGGTTGCAGCTCCCC 60.453 63.158 0.00 0.00 41.77 4.81
3565 3787 1.817099 CGATGAGGTTGCAGCTCCC 60.817 63.158 0.00 0.00 41.77 4.30
3566 3788 1.078848 ACGATGAGGTTGCAGCTCC 60.079 57.895 0.00 0.00 41.77 4.70
3567 3789 1.364626 CCACGATGAGGTTGCAGCTC 61.365 60.000 0.00 4.57 42.72 4.09
3568 3790 1.376424 CCACGATGAGGTTGCAGCT 60.376 57.895 0.00 0.00 0.00 4.24
3569 3791 2.401766 CCCACGATGAGGTTGCAGC 61.402 63.158 0.00 0.00 0.00 5.25
3570 3792 1.746615 CCCCACGATGAGGTTGCAG 60.747 63.158 0.00 0.00 0.00 4.41
3571 3793 2.184020 CTCCCCACGATGAGGTTGCA 62.184 60.000 0.00 0.00 0.00 4.08
3572 3794 1.450312 CTCCCCACGATGAGGTTGC 60.450 63.158 0.00 0.00 0.00 4.17
3573 3795 1.450312 GCTCCCCACGATGAGGTTG 60.450 63.158 0.00 0.00 0.00 3.77
3574 3796 1.613630 AGCTCCCCACGATGAGGTT 60.614 57.895 0.00 0.00 35.95 3.50
3575 3797 2.039624 AGCTCCCCACGATGAGGT 59.960 61.111 0.00 0.00 34.66 3.85
3576 3798 2.503061 CAGCTCCCCACGATGAGG 59.497 66.667 0.00 0.00 0.00 3.86
3577 3799 2.202987 GCAGCTCCCCACGATGAG 60.203 66.667 0.00 0.00 0.00 2.90
3578 3800 2.592032 TTGCAGCTCCCCACGATGA 61.592 57.895 0.00 0.00 0.00 2.92
3579 3801 2.046023 TTGCAGCTCCCCACGATG 60.046 61.111 0.00 0.00 0.00 3.84
3580 3802 2.045926 GTTGCAGCTCCCCACGAT 60.046 61.111 0.00 0.00 0.00 3.73
3601 3823 2.617274 GGTTGCAGCTTCCCACGAC 61.617 63.158 0.00 0.00 0.00 4.34
3609 3831 2.032681 GACGGGAGGTTGCAGCTT 59.967 61.111 0.00 0.00 0.00 3.74
3614 3836 3.966026 CTCGTCGACGGGAGGTTGC 62.966 68.421 33.64 0.00 43.86 4.17
3622 3844 1.058695 GTGCAATTAACTCGTCGACGG 59.941 52.381 35.05 26.87 40.29 4.79
3623 3845 1.265732 CGTGCAATTAACTCGTCGACG 60.266 52.381 31.30 31.30 41.45 5.12
3624 3846 1.717645 ACGTGCAATTAACTCGTCGAC 59.282 47.619 5.18 5.18 32.33 4.20
3625 3847 2.054687 ACGTGCAATTAACTCGTCGA 57.945 45.000 0.00 0.00 32.33 4.20
3626 3848 2.482235 CAACGTGCAATTAACTCGTCG 58.518 47.619 7.83 0.00 36.35 5.12
3628 3850 2.215196 ACCAACGTGCAATTAACTCGT 58.785 42.857 0.00 0.00 38.73 4.18
3629 3851 2.961522 ACCAACGTGCAATTAACTCG 57.038 45.000 0.00 0.00 0.00 4.18
3633 3855 3.003482 GTGTGGTACCAACGTGCAATTAA 59.997 43.478 18.31 0.00 0.00 1.40
3635 3857 1.335496 GTGTGGTACCAACGTGCAATT 59.665 47.619 18.31 0.00 0.00 2.32
3636 3858 0.948678 GTGTGGTACCAACGTGCAAT 59.051 50.000 18.31 0.00 0.00 3.56
3637 3859 0.107606 AGTGTGGTACCAACGTGCAA 60.108 50.000 18.31 0.00 0.00 4.08
3638 3860 0.107606 AAGTGTGGTACCAACGTGCA 60.108 50.000 18.31 7.16 0.00 4.57
3639 3861 0.306533 CAAGTGTGGTACCAACGTGC 59.693 55.000 18.31 4.10 0.00 5.34
3641 3863 1.155424 CGCAAGTGTGGTACCAACGT 61.155 55.000 18.31 12.34 0.00 3.99
3643 3865 1.281656 GCGCAAGTGTGGTACCAAC 59.718 57.895 18.31 16.47 41.68 3.77
3645 3867 1.890041 GTGCGCAAGTGTGGTACCA 60.890 57.895 14.00 11.60 41.68 3.25
3646 3868 2.613506 GGTGCGCAAGTGTGGTACC 61.614 63.158 14.00 4.43 41.68 3.34
3647 3869 0.320073 TAGGTGCGCAAGTGTGGTAC 60.320 55.000 14.00 0.00 41.68 3.34
3648 3870 0.320073 GTAGGTGCGCAAGTGTGGTA 60.320 55.000 14.00 0.00 41.68 3.25
3651 3873 0.599991 TGAGTAGGTGCGCAAGTGTG 60.600 55.000 14.00 0.00 41.68 3.82
3652 3874 0.600255 GTGAGTAGGTGCGCAAGTGT 60.600 55.000 14.00 0.00 41.68 3.55
3653 3875 1.617755 CGTGAGTAGGTGCGCAAGTG 61.618 60.000 14.00 0.00 41.68 3.16
3654 3876 1.372997 CGTGAGTAGGTGCGCAAGT 60.373 57.895 14.00 4.46 41.68 3.16
3655 3877 1.073216 CTCGTGAGTAGGTGCGCAAG 61.073 60.000 14.00 0.00 43.44 4.01
3656 3878 1.080772 CTCGTGAGTAGGTGCGCAA 60.081 57.895 14.00 0.00 0.00 4.85
3657 3879 2.196382 GACTCGTGAGTAGGTGCGCA 62.196 60.000 5.66 5.66 42.66 6.09
3658 3880 1.514443 GACTCGTGAGTAGGTGCGC 60.514 63.158 0.00 0.00 42.66 6.09
3659 3881 0.240145 TTGACTCGTGAGTAGGTGCG 59.760 55.000 1.83 0.00 42.66 5.34
3660 3882 2.656560 ATTGACTCGTGAGTAGGTGC 57.343 50.000 1.83 0.00 42.66 5.01
3661 3883 3.442625 TGGTATTGACTCGTGAGTAGGTG 59.557 47.826 1.83 0.00 42.66 4.00
3662 3884 3.693807 TGGTATTGACTCGTGAGTAGGT 58.306 45.455 1.83 0.00 42.66 3.08
3663 3885 4.920640 ATGGTATTGACTCGTGAGTAGG 57.079 45.455 1.83 0.00 42.66 3.18
3664 3886 5.651530 ACAATGGTATTGACTCGTGAGTAG 58.348 41.667 1.83 0.00 42.66 2.57
3665 3887 5.654603 ACAATGGTATTGACTCGTGAGTA 57.345 39.130 1.83 0.00 42.66 2.59
3666 3888 4.537135 ACAATGGTATTGACTCGTGAGT 57.463 40.909 1.35 1.35 45.84 3.41
3667 3889 4.031765 CGAACAATGGTATTGACTCGTGAG 59.968 45.833 8.41 0.00 0.00 3.51
3668 3890 3.924073 CGAACAATGGTATTGACTCGTGA 59.076 43.478 8.41 0.00 0.00 4.35
3669 3891 3.678072 ACGAACAATGGTATTGACTCGTG 59.322 43.478 22.54 7.81 38.75 4.35
3670 3892 3.678072 CACGAACAATGGTATTGACTCGT 59.322 43.478 20.01 20.01 39.80 4.18
3671 3893 3.483574 GCACGAACAATGGTATTGACTCG 60.484 47.826 19.19 19.19 35.80 4.18
3672 3894 3.435327 TGCACGAACAATGGTATTGACTC 59.565 43.478 8.41 4.17 0.00 3.36
3673 3895 3.407698 TGCACGAACAATGGTATTGACT 58.592 40.909 8.41 0.00 0.00 3.41
3674 3896 3.822594 TGCACGAACAATGGTATTGAC 57.177 42.857 8.41 2.21 0.00 3.18
3675 3897 3.755905 ACATGCACGAACAATGGTATTGA 59.244 39.130 8.41 0.00 0.00 2.57
3676 3898 4.095410 ACATGCACGAACAATGGTATTG 57.905 40.909 0.00 0.28 0.00 1.90
3677 3899 3.755905 TGACATGCACGAACAATGGTATT 59.244 39.130 0.00 0.00 0.00 1.89
3678 3900 3.342719 TGACATGCACGAACAATGGTAT 58.657 40.909 0.00 0.00 0.00 2.73
3679 3901 2.772287 TGACATGCACGAACAATGGTA 58.228 42.857 0.00 0.00 0.00 3.25
3680 3902 1.603456 TGACATGCACGAACAATGGT 58.397 45.000 0.00 0.00 0.00 3.55
3681 3903 2.925578 ATGACATGCACGAACAATGG 57.074 45.000 0.00 0.00 0.00 3.16
3682 3904 4.604843 ACTATGACATGCACGAACAATG 57.395 40.909 0.00 0.00 0.00 2.82
3683 3905 4.694982 TGAACTATGACATGCACGAACAAT 59.305 37.500 0.00 0.00 0.00 2.71
3684 3906 4.061596 TGAACTATGACATGCACGAACAA 58.938 39.130 0.00 0.00 0.00 2.83
3685 3907 3.658709 TGAACTATGACATGCACGAACA 58.341 40.909 0.00 0.00 0.00 3.18
3686 3908 3.679980 ACTGAACTATGACATGCACGAAC 59.320 43.478 0.00 0.00 0.00 3.95
3687 3909 3.925379 ACTGAACTATGACATGCACGAA 58.075 40.909 0.00 0.00 0.00 3.85
3688 3910 3.592898 ACTGAACTATGACATGCACGA 57.407 42.857 0.00 0.00 0.00 4.35
3689 3911 3.551890 GGTACTGAACTATGACATGCACG 59.448 47.826 0.00 0.00 0.00 5.34
3690 3912 4.330074 GTGGTACTGAACTATGACATGCAC 59.670 45.833 0.00 0.00 0.00 4.57
3691 3913 4.222810 AGTGGTACTGAACTATGACATGCA 59.777 41.667 0.00 0.00 0.00 3.96
3692 3914 4.759782 AGTGGTACTGAACTATGACATGC 58.240 43.478 0.00 0.00 0.00 4.06
3693 3915 7.379797 CGAATAGTGGTACTGAACTATGACATG 59.620 40.741 13.53 0.00 39.11 3.21
3694 3916 7.426410 CGAATAGTGGTACTGAACTATGACAT 58.574 38.462 13.53 0.00 39.11 3.06
3695 3917 6.183360 CCGAATAGTGGTACTGAACTATGACA 60.183 42.308 13.53 0.00 39.11 3.58
3696 3918 6.183360 ACCGAATAGTGGTACTGAACTATGAC 60.183 42.308 13.53 10.96 39.11 3.06
3697 3919 5.889853 ACCGAATAGTGGTACTGAACTATGA 59.110 40.000 13.53 0.00 39.11 2.15
3698 3920 6.039493 AGACCGAATAGTGGTACTGAACTATG 59.961 42.308 13.53 7.27 40.63 2.23
3699 3921 6.127793 AGACCGAATAGTGGTACTGAACTAT 58.872 40.000 9.30 9.30 40.63 2.12
3700 3922 5.503927 AGACCGAATAGTGGTACTGAACTA 58.496 41.667 0.00 0.00 40.63 2.24
3701 3923 4.342359 AGACCGAATAGTGGTACTGAACT 58.658 43.478 0.00 0.00 40.63 3.01
3702 3924 4.715527 AGACCGAATAGTGGTACTGAAC 57.284 45.455 0.00 0.00 40.63 3.18
3703 3925 5.948162 AGTTAGACCGAATAGTGGTACTGAA 59.052 40.000 0.00 0.00 40.63 3.02
3704 3926 5.356190 CAGTTAGACCGAATAGTGGTACTGA 59.644 44.000 7.47 0.00 42.35 3.41
3705 3927 5.125097 ACAGTTAGACCGAATAGTGGTACTG 59.875 44.000 10.48 10.48 44.01 2.74
3706 3928 5.259632 ACAGTTAGACCGAATAGTGGTACT 58.740 41.667 0.00 0.00 40.63 2.73
3707 3929 5.573337 ACAGTTAGACCGAATAGTGGTAC 57.427 43.478 0.00 0.00 40.63 3.34
3708 3930 6.658816 TGTAACAGTTAGACCGAATAGTGGTA 59.341 38.462 0.00 0.00 40.63 3.25
3709 3931 5.477984 TGTAACAGTTAGACCGAATAGTGGT 59.522 40.000 0.00 0.00 44.10 4.16
3710 3932 5.957798 TGTAACAGTTAGACCGAATAGTGG 58.042 41.667 0.00 0.00 0.00 4.00
3711 3933 7.878477 TTTGTAACAGTTAGACCGAATAGTG 57.122 36.000 0.00 0.00 0.00 2.74
3712 3934 8.932791 CATTTTGTAACAGTTAGACCGAATAGT 58.067 33.333 0.00 0.00 0.00 2.12
3713 3935 8.388103 CCATTTTGTAACAGTTAGACCGAATAG 58.612 37.037 0.00 0.00 0.00 1.73
3714 3936 8.095792 TCCATTTTGTAACAGTTAGACCGAATA 58.904 33.333 0.00 0.00 0.00 1.75
3715 3937 6.938030 TCCATTTTGTAACAGTTAGACCGAAT 59.062 34.615 0.00 0.00 0.00 3.34
3716 3938 6.203338 GTCCATTTTGTAACAGTTAGACCGAA 59.797 38.462 0.00 0.00 0.00 4.30
3717 3939 5.697633 GTCCATTTTGTAACAGTTAGACCGA 59.302 40.000 0.00 0.00 0.00 4.69
3718 3940 5.699458 AGTCCATTTTGTAACAGTTAGACCG 59.301 40.000 0.00 0.00 0.00 4.79
3719 3941 6.708949 TCAGTCCATTTTGTAACAGTTAGACC 59.291 38.462 0.00 0.00 0.00 3.85
3720 3942 7.225931 TGTCAGTCCATTTTGTAACAGTTAGAC 59.774 37.037 0.00 0.00 0.00 2.59
3721 3943 7.276658 TGTCAGTCCATTTTGTAACAGTTAGA 58.723 34.615 0.00 0.00 0.00 2.10
3722 3944 7.490962 TGTCAGTCCATTTTGTAACAGTTAG 57.509 36.000 0.00 0.00 0.00 2.34
3723 3945 6.017440 GCTGTCAGTCCATTTTGTAACAGTTA 60.017 38.462 0.93 0.00 36.22 2.24
3724 3946 5.221048 GCTGTCAGTCCATTTTGTAACAGTT 60.221 40.000 0.93 0.00 36.22 3.16
3725 3947 4.275936 GCTGTCAGTCCATTTTGTAACAGT 59.724 41.667 0.93 0.00 36.22 3.55
3726 3948 4.320494 GGCTGTCAGTCCATTTTGTAACAG 60.320 45.833 0.93 0.00 36.75 3.16
3727 3949 3.568007 GGCTGTCAGTCCATTTTGTAACA 59.432 43.478 0.93 0.00 0.00 2.41
3728 3950 3.364964 CGGCTGTCAGTCCATTTTGTAAC 60.365 47.826 12.09 0.00 0.00 2.50
3729 3951 2.811431 CGGCTGTCAGTCCATTTTGTAA 59.189 45.455 12.09 0.00 0.00 2.41
3730 3952 2.224426 ACGGCTGTCAGTCCATTTTGTA 60.224 45.455 12.09 0.00 0.00 2.41
3731 3953 1.238439 CGGCTGTCAGTCCATTTTGT 58.762 50.000 12.09 0.00 0.00 2.83
3732 3954 1.238439 ACGGCTGTCAGTCCATTTTG 58.762 50.000 12.09 0.00 0.00 2.44
3733 3955 2.851263 TACGGCTGTCAGTCCATTTT 57.149 45.000 0.00 0.00 0.00 1.82
3734 3956 4.081087 ACTTATACGGCTGTCAGTCCATTT 60.081 41.667 0.00 0.00 0.00 2.32
3735 3957 3.451178 ACTTATACGGCTGTCAGTCCATT 59.549 43.478 0.00 3.21 0.00 3.16
3736 3958 3.031736 ACTTATACGGCTGTCAGTCCAT 58.968 45.455 0.00 0.00 0.00 3.41
3737 3959 2.165641 CACTTATACGGCTGTCAGTCCA 59.834 50.000 0.00 0.00 0.00 4.02
3738 3960 2.165845 ACACTTATACGGCTGTCAGTCC 59.834 50.000 0.00 1.18 0.00 3.85
3739 3961 3.179830 CACACTTATACGGCTGTCAGTC 58.820 50.000 0.00 0.00 0.00 3.51
3740 3962 2.561419 ACACACTTATACGGCTGTCAGT 59.439 45.455 0.00 0.00 0.00 3.41
3741 3963 3.232213 ACACACTTATACGGCTGTCAG 57.768 47.619 0.00 0.00 0.00 3.51
3742 3964 4.994907 ATACACACTTATACGGCTGTCA 57.005 40.909 0.00 0.00 0.00 3.58
3743 3965 5.231568 GTCAATACACACTTATACGGCTGTC 59.768 44.000 0.00 0.00 0.00 3.51
3744 3966 5.107133 GTCAATACACACTTATACGGCTGT 58.893 41.667 2.42 2.42 0.00 4.40
3745 3967 4.506654 GGTCAATACACACTTATACGGCTG 59.493 45.833 0.00 0.00 0.00 4.85
3746 3968 4.160814 TGGTCAATACACACTTATACGGCT 59.839 41.667 0.00 0.00 0.00 5.52
3747 3969 4.435425 TGGTCAATACACACTTATACGGC 58.565 43.478 0.00 0.00 0.00 5.68
3748 3970 6.046593 ACATGGTCAATACACACTTATACGG 58.953 40.000 0.00 0.00 0.00 4.02
3749 3971 8.812147 ATACATGGTCAATACACACTTATACG 57.188 34.615 0.00 0.00 0.00 3.06
3750 3972 9.982651 AGATACATGGTCAATACACACTTATAC 57.017 33.333 0.00 0.00 0.00 1.47
3751 3973 9.981114 CAGATACATGGTCAATACACACTTATA 57.019 33.333 0.00 0.00 0.00 0.98
3752 3974 8.704668 TCAGATACATGGTCAATACACACTTAT 58.295 33.333 0.00 0.00 0.00 1.73
3753 3975 7.979537 GTCAGATACATGGTCAATACACACTTA 59.020 37.037 0.00 0.00 0.00 2.24
3754 3976 6.818644 GTCAGATACATGGTCAATACACACTT 59.181 38.462 0.00 0.00 0.00 3.16
3755 3977 6.070824 TGTCAGATACATGGTCAATACACACT 60.071 38.462 0.00 0.00 31.43 3.55
3756 3978 6.106003 TGTCAGATACATGGTCAATACACAC 58.894 40.000 0.00 0.00 31.43 3.82
3757 3979 6.154363 TCTGTCAGATACATGGTCAATACACA 59.846 38.462 0.00 0.00 37.50 3.72
3758 3980 6.477033 GTCTGTCAGATACATGGTCAATACAC 59.523 42.308 5.68 0.00 37.50 2.90
3759 3981 6.406961 GGTCTGTCAGATACATGGTCAATACA 60.407 42.308 5.68 0.96 37.50 2.29
3760 3982 5.986135 GGTCTGTCAGATACATGGTCAATAC 59.014 44.000 5.68 0.00 37.50 1.89
3761 3983 5.221244 CGGTCTGTCAGATACATGGTCAATA 60.221 44.000 5.68 0.00 37.50 1.90
3762 3984 4.442052 CGGTCTGTCAGATACATGGTCAAT 60.442 45.833 5.68 0.00 37.50 2.57
3763 3985 3.119137 CGGTCTGTCAGATACATGGTCAA 60.119 47.826 5.68 0.00 37.50 3.18
3764 3986 2.427095 CGGTCTGTCAGATACATGGTCA 59.573 50.000 5.68 0.00 37.50 4.02
3765 3987 2.223829 CCGGTCTGTCAGATACATGGTC 60.224 54.545 5.68 0.00 37.50 4.02
3766 3988 1.757118 CCGGTCTGTCAGATACATGGT 59.243 52.381 5.68 0.00 37.50 3.55
3767 3989 1.069204 CCCGGTCTGTCAGATACATGG 59.931 57.143 5.68 4.15 37.50 3.66
3768 3990 1.539065 GCCCGGTCTGTCAGATACATG 60.539 57.143 5.68 0.00 37.50 3.21
3769 3991 0.753262 GCCCGGTCTGTCAGATACAT 59.247 55.000 5.68 0.00 37.50 2.29
3770 3992 1.327690 GGCCCGGTCTGTCAGATACA 61.328 60.000 5.68 0.00 36.42 2.29
3771 3993 1.442148 GGCCCGGTCTGTCAGATAC 59.558 63.158 5.68 1.76 0.00 2.24
3772 3994 1.760875 GGGCCCGGTCTGTCAGATA 60.761 63.158 5.69 0.00 0.00 1.98
3773 3995 3.083997 GGGCCCGGTCTGTCAGAT 61.084 66.667 5.69 0.00 0.00 2.90
3774 3996 4.631740 TGGGCCCGGTCTGTCAGA 62.632 66.667 19.37 0.00 0.00 3.27
3775 3997 4.394712 GTGGGCCCGGTCTGTCAG 62.395 72.222 19.37 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.