Multiple sequence alignment - TraesCS3B01G304200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G304200 chr3B 100.000 4242 0 0 1 4242 488538668 488534427 0.000000e+00 7834.0
1 TraesCS3B01G304200 chr3B 97.156 668 12 2 3581 4242 40397288 40396622 0.000000e+00 1122.0
2 TraesCS3B01G304200 chr3B 96.582 673 12 2 3580 4242 639396707 639396036 0.000000e+00 1105.0
3 TraesCS3B01G304200 chr3B 96.307 677 14 2 3576 4242 596298698 596299373 0.000000e+00 1101.0
4 TraesCS3B01G304200 chr3B 100.000 66 0 0 3213 3278 488535388 488535323 5.760000e-24 122.0
5 TraesCS3B01G304200 chr3B 100.000 66 0 0 3281 3346 488535456 488535391 5.760000e-24 122.0
6 TraesCS3B01G304200 chr3B 97.826 46 1 0 374 419 41802211 41802256 3.520000e-11 80.5
7 TraesCS3B01G304200 chr3D 95.666 2884 92 20 413 3278 374931760 374928892 0.000000e+00 4602.0
8 TraesCS3B01G304200 chr3D 96.053 304 12 0 3281 3584 374928957 374928654 2.950000e-136 496.0
9 TraesCS3B01G304200 chr3D 92.143 140 9 2 38 175 374932292 374932153 3.350000e-46 196.0
10 TraesCS3B01G304200 chr3D 91.346 104 9 0 272 375 374931848 374931745 4.420000e-30 143.0
11 TraesCS3B01G304200 chr3D 94.444 54 1 2 3207 3258 374928919 374928866 9.780000e-12 82.4
12 TraesCS3B01G304200 chr3D 95.652 46 0 2 3283 3326 374928911 374928866 5.880000e-09 73.1
13 TraesCS3B01G304200 chr3D 89.655 58 4 2 364 419 423851298 423851355 5.880000e-09 73.1
14 TraesCS3B01G304200 chr3D 89.474 57 4 2 374 428 360567092 360567036 2.120000e-08 71.3
15 TraesCS3B01G304200 chr3D 89.474 57 4 2 374 428 461601973 461601917 2.120000e-08 71.3
16 TraesCS3B01G304200 chr3D 89.474 57 4 2 374 428 571148828 571148772 2.120000e-08 71.3
17 TraesCS3B01G304200 chr3D 95.000 40 2 0 325 364 597762050 597762011 3.540000e-06 63.9
18 TraesCS3B01G304200 chr3A 95.897 1779 60 10 1510 3278 497651269 497649494 0.000000e+00 2868.0
19 TraesCS3B01G304200 chr3A 90.710 1098 56 20 413 1481 497652413 497651333 0.000000e+00 1421.0
20 TraesCS3B01G304200 chr3A 91.531 307 10 7 3281 3584 497649559 497649266 3.950000e-110 409.0
21 TraesCS3B01G304200 chr3A 92.593 54 2 2 3207 3258 497649521 497649468 4.550000e-10 76.8
22 TraesCS3B01G304200 chr3A 93.478 46 1 2 3283 3326 497649513 497649468 2.740000e-07 67.6
23 TraesCS3B01G304200 chr2B 96.582 673 11 3 3581 4242 425833424 425834095 0.000000e+00 1105.0
24 TraesCS3B01G304200 chr4B 96.434 673 13 2 3580 4242 580806937 580807608 0.000000e+00 1099.0
25 TraesCS3B01G304200 chr4B 96.429 672 12 3 3581 4242 64789806 64790475 0.000000e+00 1098.0
26 TraesCS3B01G304200 chr4B 95.652 46 2 0 374 419 217842230 217842275 1.640000e-09 75.0
27 TraesCS3B01G304200 chr4B 90.698 43 3 1 1 43 161846229 161846270 5.930000e-04 56.5
28 TraesCS3B01G304200 chr7B 96.429 672 12 2 3581 4242 693799405 693800074 0.000000e+00 1098.0
29 TraesCS3B01G304200 chr7B 91.228 57 3 2 374 428 228970 228914 4.550000e-10 76.8
30 TraesCS3B01G304200 chr7B 86.111 72 5 5 350 419 746235452 746235520 5.880000e-09 73.1
31 TraesCS3B01G304200 chr7B 97.500 40 0 1 1 40 574168765 574168803 2.740000e-07 67.6
32 TraesCS3B01G304200 chr7B 90.698 43 2 2 2275 2315 693245726 693245768 5.930000e-04 56.5
33 TraesCS3B01G304200 chr5B 95.833 672 16 3 3581 4242 629143756 629143087 0.000000e+00 1075.0
34 TraesCS3B01G304200 chr5B 93.515 478 16 9 3768 4241 57986623 57986157 0.000000e+00 697.0
35 TraesCS3B01G304200 chr5B 94.118 51 2 1 370 419 528112171 528112221 4.550000e-10 76.8
36 TraesCS3B01G304200 chr6B 95.619 662 19 3 3581 4242 308470704 308471355 0.000000e+00 1053.0
37 TraesCS3B01G304200 chr6A 94.057 488 12 5 3769 4242 122684161 122684645 0.000000e+00 725.0
38 TraesCS3B01G304200 chr6A 93.648 488 17 10 3759 4242 562124778 562124301 0.000000e+00 717.0
39 TraesCS3B01G304200 chr6A 93.125 480 16 10 3766 4241 89979257 89978791 0.000000e+00 688.0
40 TraesCS3B01G304200 chr2A 93.333 480 24 5 3768 4242 80132165 80131689 0.000000e+00 702.0
41 TraesCS3B01G304200 chr1D 78.761 113 24 0 258 370 319616269 319616157 4.550000e-10 76.8
42 TraesCS3B01G304200 chr1D 97.727 44 1 0 374 417 385629786 385629743 4.550000e-10 76.8
43 TraesCS3B01G304200 chr1D 95.652 46 2 0 374 419 128521023 128520978 1.640000e-09 75.0
44 TraesCS3B01G304200 chr1D 95.652 46 1 1 374 419 291798692 291798648 5.880000e-09 73.1
45 TraesCS3B01G304200 chrUn 95.652 46 2 0 374 419 65831037 65830992 1.640000e-09 75.0
46 TraesCS3B01G304200 chrUn 93.617 47 2 1 374 419 17480287 17480241 7.610000e-08 69.4
47 TraesCS3B01G304200 chrUn 97.500 40 1 0 374 413 36352392 36352431 7.610000e-08 69.4
48 TraesCS3B01G304200 chrUn 93.617 47 2 1 374 419 195377476 195377522 7.610000e-08 69.4
49 TraesCS3B01G304200 chrUn 97.500 40 1 0 374 413 214882613 214882574 7.610000e-08 69.4
50 TraesCS3B01G304200 chrUn 97.500 40 1 0 374 413 310357865 310357826 7.610000e-08 69.4
51 TraesCS3B01G304200 chrUn 93.182 44 3 0 376 419 1599091 1599134 9.850000e-07 65.8
52 TraesCS3B01G304200 chrUn 93.333 45 2 1 376 419 39720899 39720855 9.850000e-07 65.8
53 TraesCS3B01G304200 chrUn 97.368 38 1 0 378 415 308101838 308101875 9.850000e-07 65.8
54 TraesCS3B01G304200 chrUn 95.122 41 2 0 373 413 318884158 318884118 9.850000e-07 65.8
55 TraesCS3B01G304200 chr7D 91.071 56 3 2 369 422 107067919 107067864 1.640000e-09 75.0
56 TraesCS3B01G304200 chr7D 89.655 58 4 2 374 429 611660661 611660604 5.880000e-09 73.1
57 TraesCS3B01G304200 chr7D 97.561 41 0 1 1 41 5809777 5809816 7.610000e-08 69.4
58 TraesCS3B01G304200 chr5D 88.710 62 5 2 357 418 551841570 551841511 1.640000e-09 75.0
59 TraesCS3B01G304200 chr6D 95.556 45 2 0 375 419 27464201 27464157 5.880000e-09 73.1
60 TraesCS3B01G304200 chr6D 95.652 46 1 1 374 419 28156347 28156391 5.880000e-09 73.1
61 TraesCS3B01G304200 chr6D 95.556 45 2 0 374 418 161140613 161140569 5.880000e-09 73.1
62 TraesCS3B01G304200 chr6D 92.157 51 3 1 370 419 27226158 27226108 2.120000e-08 71.3
63 TraesCS3B01G304200 chr6D 93.750 48 2 1 374 420 44544962 44544915 2.120000e-08 71.3
64 TraesCS3B01G304200 chr6D 97.561 41 1 0 374 414 47098883 47098843 2.120000e-08 71.3
65 TraesCS3B01G304200 chr6D 90.566 53 5 0 367 419 78021159 78021211 2.120000e-08 71.3
66 TraesCS3B01G304200 chr6D 88.333 60 5 2 371 428 78765096 78765155 2.120000e-08 71.3
67 TraesCS3B01G304200 chr6D 93.617 47 2 1 374 419 192100185 192100231 7.610000e-08 69.4
68 TraesCS3B01G304200 chr4A 89.655 58 4 2 374 429 602939987 602940044 5.880000e-09 73.1
69 TraesCS3B01G304200 chr4D 89.474 57 4 2 374 428 58390443 58390387 2.120000e-08 71.3
70 TraesCS3B01G304200 chr4D 89.474 57 4 2 374 428 373876749 373876805 2.120000e-08 71.3
71 TraesCS3B01G304200 chr4D 97.500 40 0 1 1 40 359747406 359747368 2.740000e-07 67.6
72 TraesCS3B01G304200 chr1B 97.368 38 1 0 333 370 485690894 485690931 9.850000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G304200 chr3B 488534427 488538668 4241 True 2692.666667 7834 100.000000 1 4242 3 chr3B.!!$R3 4241
1 TraesCS3B01G304200 chr3B 40396622 40397288 666 True 1122.000000 1122 97.156000 3581 4242 1 chr3B.!!$R1 661
2 TraesCS3B01G304200 chr3B 639396036 639396707 671 True 1105.000000 1105 96.582000 3580 4242 1 chr3B.!!$R2 662
3 TraesCS3B01G304200 chr3B 596298698 596299373 675 False 1101.000000 1101 96.307000 3576 4242 1 chr3B.!!$F2 666
4 TraesCS3B01G304200 chr3D 374928654 374932292 3638 True 932.083333 4602 94.217333 38 3584 6 chr3D.!!$R5 3546
5 TraesCS3B01G304200 chr3A 497649266 497652413 3147 True 968.480000 2868 92.841800 413 3584 5 chr3A.!!$R1 3171
6 TraesCS3B01G304200 chr2B 425833424 425834095 671 False 1105.000000 1105 96.582000 3581 4242 1 chr2B.!!$F1 661
7 TraesCS3B01G304200 chr4B 580806937 580807608 671 False 1099.000000 1099 96.434000 3580 4242 1 chr4B.!!$F4 662
8 TraesCS3B01G304200 chr4B 64789806 64790475 669 False 1098.000000 1098 96.429000 3581 4242 1 chr4B.!!$F1 661
9 TraesCS3B01G304200 chr7B 693799405 693800074 669 False 1098.000000 1098 96.429000 3581 4242 1 chr7B.!!$F3 661
10 TraesCS3B01G304200 chr5B 629143087 629143756 669 True 1075.000000 1075 95.833000 3581 4242 1 chr5B.!!$R2 661
11 TraesCS3B01G304200 chr6B 308470704 308471355 651 False 1053.000000 1053 95.619000 3581 4242 1 chr6B.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 589 0.034767 ACCTCCATGACTCGTACCGA 60.035 55.0 0.0 0.0 0.00 4.69 F
400 611 0.035739 AAGTCTTTCGCCCCGCTTTA 59.964 50.0 0.0 0.0 0.00 1.85 F
401 612 0.252197 AGTCTTTCGCCCCGCTTTAT 59.748 50.0 0.0 0.0 0.00 1.40 F
882 1106 0.391228 CCTCAAAAACCAAACCCCCG 59.609 55.0 0.0 0.0 0.00 5.73 F
1032 1259 0.818296 CGTCCCTCTCGTCATCCTTT 59.182 55.0 0.0 0.0 0.00 3.11 F
1709 1994 0.901124 ATGGAGGTCACTCTCACTGC 59.099 55.0 0.0 0.0 43.46 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1944 0.606401 CCTCGGACACCTGTTGCAAT 60.606 55.000 0.59 0.00 0.00 3.56 R
2090 2376 1.965754 GCTGGAGCCACTTCCTCGAT 61.966 60.000 0.00 0.00 38.12 3.59 R
2326 2612 3.269538 TCCAAAAGAAAGTGTCGTGGA 57.730 42.857 0.61 0.61 35.45 4.02 R
2822 3113 0.790814 GGAAACGAGTACTGCAGCAC 59.209 55.000 15.27 12.04 0.00 4.40 R
2890 3181 1.040339 CGAGAGCCCTGGAGTAGCTT 61.040 60.000 0.00 0.00 36.87 3.74 R
3346 3643 0.320697 AAACTGCCCGTCTCACCTAC 59.679 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.181573 TCTTATATGCAGGCTAAAAAGAAAACG 58.818 33.333 0.00 0.00 0.00 3.60
31 32 3.363341 TGCAGGCTAAAAAGAAAACGG 57.637 42.857 0.00 0.00 0.00 4.44
32 33 2.952978 TGCAGGCTAAAAAGAAAACGGA 59.047 40.909 0.00 0.00 0.00 4.69
33 34 3.004315 TGCAGGCTAAAAAGAAAACGGAG 59.996 43.478 0.00 0.00 0.00 4.63
34 35 3.611766 GCAGGCTAAAAAGAAAACGGAGG 60.612 47.826 0.00 0.00 0.00 4.30
35 36 3.057526 CAGGCTAAAAAGAAAACGGAGGG 60.058 47.826 0.00 0.00 0.00 4.30
36 37 3.151554 GGCTAAAAAGAAAACGGAGGGA 58.848 45.455 0.00 0.00 0.00 4.20
44 45 1.000171 GAAAACGGAGGGAGTACGTGT 60.000 52.381 0.00 0.00 41.12 4.49
59 60 1.203025 ACGTGTCTCTCCACCCTAACT 60.203 52.381 0.00 0.00 31.47 2.24
64 65 2.111384 TCTCTCCACCCTAACTGATGC 58.889 52.381 0.00 0.00 0.00 3.91
68 69 1.221840 CACCCTAACTGATGCGCCT 59.778 57.895 4.18 0.00 0.00 5.52
69 70 1.091771 CACCCTAACTGATGCGCCTG 61.092 60.000 4.18 0.00 0.00 4.85
71 72 1.221840 CCTAACTGATGCGCCTGGT 59.778 57.895 4.18 0.00 0.00 4.00
72 73 0.811616 CCTAACTGATGCGCCTGGTC 60.812 60.000 4.18 0.00 0.00 4.02
73 74 0.108186 CTAACTGATGCGCCTGGTCA 60.108 55.000 4.18 3.20 0.00 4.02
109 112 4.649218 CCAAATAATGGTTTAGGTCCCCTG 59.351 45.833 0.00 0.00 44.85 4.45
119 122 2.513259 GGTCCCCTGTCACCAACGA 61.513 63.158 0.00 0.00 32.33 3.85
133 136 9.104965 CTGTCACCAACGATAATTAATAAAGGA 57.895 33.333 0.00 0.00 0.00 3.36
175 178 5.006746 CACTATTCTCAATTCAAGTACGGCC 59.993 44.000 0.00 0.00 0.00 6.13
177 180 1.065709 TCTCAATTCAAGTACGGCCCC 60.066 52.381 0.00 0.00 0.00 5.80
178 181 0.693622 TCAATTCAAGTACGGCCCCA 59.306 50.000 0.00 0.00 0.00 4.96
179 182 0.808755 CAATTCAAGTACGGCCCCAC 59.191 55.000 0.00 0.00 0.00 4.61
180 183 0.402504 AATTCAAGTACGGCCCCACA 59.597 50.000 0.00 0.00 0.00 4.17
181 184 0.623723 ATTCAAGTACGGCCCCACAT 59.376 50.000 0.00 0.00 0.00 3.21
182 185 0.402504 TTCAAGTACGGCCCCACATT 59.597 50.000 0.00 0.00 0.00 2.71
183 186 0.035820 TCAAGTACGGCCCCACATTC 60.036 55.000 0.00 0.00 0.00 2.67
184 187 0.035439 CAAGTACGGCCCCACATTCT 60.035 55.000 0.00 0.00 0.00 2.40
185 188 0.252197 AAGTACGGCCCCACATTCTC 59.748 55.000 0.00 0.00 0.00 2.87
186 189 0.907704 AGTACGGCCCCACATTCTCA 60.908 55.000 0.00 0.00 0.00 3.27
187 190 0.035820 GTACGGCCCCACATTCTCAA 60.036 55.000 0.00 0.00 0.00 3.02
188 191 0.693622 TACGGCCCCACATTCTCAAA 59.306 50.000 0.00 0.00 0.00 2.69
189 192 0.178975 ACGGCCCCACATTCTCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
190 193 0.965439 CGGCCCCACATTCTCAAAAA 59.035 50.000 0.00 0.00 0.00 1.94
191 194 1.336795 CGGCCCCACATTCTCAAAAAC 60.337 52.381 0.00 0.00 0.00 2.43
192 195 1.001974 GGCCCCACATTCTCAAAAACC 59.998 52.381 0.00 0.00 0.00 3.27
193 196 1.691434 GCCCCACATTCTCAAAAACCA 59.309 47.619 0.00 0.00 0.00 3.67
194 197 2.302733 GCCCCACATTCTCAAAAACCAT 59.697 45.455 0.00 0.00 0.00 3.55
195 198 3.513515 GCCCCACATTCTCAAAAACCATA 59.486 43.478 0.00 0.00 0.00 2.74
196 199 4.162131 GCCCCACATTCTCAAAAACCATAT 59.838 41.667 0.00 0.00 0.00 1.78
197 200 5.682212 GCCCCACATTCTCAAAAACCATATC 60.682 44.000 0.00 0.00 0.00 1.63
198 201 5.658190 CCCCACATTCTCAAAAACCATATCT 59.342 40.000 0.00 0.00 0.00 1.98
199 202 6.406177 CCCCACATTCTCAAAAACCATATCTG 60.406 42.308 0.00 0.00 0.00 2.90
200 203 6.377996 CCCACATTCTCAAAAACCATATCTGA 59.622 38.462 0.00 0.00 0.00 3.27
201 204 7.069085 CCCACATTCTCAAAAACCATATCTGAT 59.931 37.037 0.00 0.00 0.00 2.90
202 205 8.133627 CCACATTCTCAAAAACCATATCTGATC 58.866 37.037 0.00 0.00 0.00 2.92
203 206 8.133627 CACATTCTCAAAAACCATATCTGATCC 58.866 37.037 0.00 0.00 0.00 3.36
204 207 7.835682 ACATTCTCAAAAACCATATCTGATCCA 59.164 33.333 0.00 0.00 0.00 3.41
205 208 8.689061 CATTCTCAAAAACCATATCTGATCCAA 58.311 33.333 0.00 0.00 0.00 3.53
206 209 7.870509 TCTCAAAAACCATATCTGATCCAAG 57.129 36.000 0.00 0.00 0.00 3.61
207 210 6.830324 TCTCAAAAACCATATCTGATCCAAGG 59.170 38.462 0.00 0.00 0.00 3.61
208 211 5.893255 TCAAAAACCATATCTGATCCAAGGG 59.107 40.000 0.00 0.00 0.00 3.95
209 212 4.459852 AAACCATATCTGATCCAAGGGG 57.540 45.455 0.00 0.00 0.00 4.79
210 213 2.352371 ACCATATCTGATCCAAGGGGG 58.648 52.381 0.00 0.00 38.37 5.40
211 214 1.005215 CCATATCTGATCCAAGGGGGC 59.995 57.143 0.00 0.00 36.21 5.80
212 215 0.987294 ATATCTGATCCAAGGGGGCG 59.013 55.000 0.00 0.00 36.21 6.13
213 216 1.127567 TATCTGATCCAAGGGGGCGG 61.128 60.000 0.00 0.00 36.21 6.13
214 217 3.411517 CTGATCCAAGGGGGCGGT 61.412 66.667 0.00 0.00 36.21 5.68
215 218 3.704231 CTGATCCAAGGGGGCGGTG 62.704 68.421 0.00 0.00 36.21 4.94
229 232 3.059386 GGTGCATCGGCGGGAAAA 61.059 61.111 7.21 0.00 45.35 2.29
230 233 2.414785 GGTGCATCGGCGGGAAAAT 61.415 57.895 7.21 0.00 45.35 1.82
231 234 1.064134 GTGCATCGGCGGGAAAATC 59.936 57.895 7.21 0.00 45.35 2.17
232 235 1.077787 TGCATCGGCGGGAAAATCT 60.078 52.632 7.21 0.00 45.35 2.40
233 236 0.179234 TGCATCGGCGGGAAAATCTA 59.821 50.000 7.21 0.00 45.35 1.98
234 237 0.868406 GCATCGGCGGGAAAATCTAG 59.132 55.000 7.21 0.00 0.00 2.43
235 238 0.868406 CATCGGCGGGAAAATCTAGC 59.132 55.000 7.21 0.00 0.00 3.42
236 239 0.250338 ATCGGCGGGAAAATCTAGCC 60.250 55.000 7.21 6.58 44.00 3.93
237 240 1.146263 CGGCGGGAAAATCTAGCCT 59.854 57.895 0.00 0.00 45.16 4.58
238 241 0.391597 CGGCGGGAAAATCTAGCCTA 59.608 55.000 0.00 0.00 45.16 3.93
239 242 1.872653 CGGCGGGAAAATCTAGCCTAC 60.873 57.143 0.00 0.00 45.16 3.18
240 243 1.140252 GGCGGGAAAATCTAGCCTACA 59.860 52.381 8.58 0.00 44.06 2.74
241 244 2.224548 GGCGGGAAAATCTAGCCTACAT 60.225 50.000 8.58 0.00 44.06 2.29
242 245 2.808543 GCGGGAAAATCTAGCCTACATG 59.191 50.000 0.00 0.00 0.00 3.21
243 246 2.808543 CGGGAAAATCTAGCCTACATGC 59.191 50.000 0.00 0.00 0.00 4.06
244 247 3.495100 CGGGAAAATCTAGCCTACATGCT 60.495 47.826 0.00 0.00 45.38 3.79
245 248 3.817647 GGGAAAATCTAGCCTACATGCTG 59.182 47.826 0.00 0.00 42.77 4.41
246 249 4.455606 GGAAAATCTAGCCTACATGCTGT 58.544 43.478 0.00 0.00 42.77 4.40
247 250 4.513318 GGAAAATCTAGCCTACATGCTGTC 59.487 45.833 0.00 0.00 42.77 3.51
248 251 3.377346 AATCTAGCCTACATGCTGTCG 57.623 47.619 0.00 0.00 42.77 4.35
249 252 1.763968 TCTAGCCTACATGCTGTCGT 58.236 50.000 0.00 0.00 42.77 4.34
250 253 2.100197 TCTAGCCTACATGCTGTCGTT 58.900 47.619 0.00 0.00 42.77 3.85
251 254 2.099263 TCTAGCCTACATGCTGTCGTTC 59.901 50.000 0.00 0.00 42.77 3.95
252 255 0.108138 AGCCTACATGCTGTCGTTCC 60.108 55.000 0.00 0.00 40.90 3.62
253 256 0.108138 GCCTACATGCTGTCGTTCCT 60.108 55.000 0.00 0.00 0.00 3.36
254 257 1.136305 GCCTACATGCTGTCGTTCCTA 59.864 52.381 0.00 0.00 0.00 2.94
255 258 2.799917 GCCTACATGCTGTCGTTCCTAG 60.800 54.545 0.00 0.00 0.00 3.02
256 259 2.688446 CCTACATGCTGTCGTTCCTAGA 59.312 50.000 0.00 0.00 0.00 2.43
257 260 2.656560 ACATGCTGTCGTTCCTAGAC 57.343 50.000 0.00 0.00 38.98 2.59
258 261 1.893137 ACATGCTGTCGTTCCTAGACA 59.107 47.619 0.00 0.00 45.23 3.41
263 266 0.601558 TGTCGTTCCTAGACAGTGCC 59.398 55.000 0.00 0.00 42.91 5.01
264 267 0.456312 GTCGTTCCTAGACAGTGCCG 60.456 60.000 0.00 0.00 38.42 5.69
265 268 1.153823 CGTTCCTAGACAGTGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
266 269 1.448013 GTTCCTAGACAGTGCCGGC 60.448 63.158 22.73 22.73 0.00 6.13
267 270 3.001902 TTCCTAGACAGTGCCGGCG 62.002 63.158 23.90 10.49 0.00 6.46
268 271 4.514577 CCTAGACAGTGCCGGCGG 62.515 72.222 24.35 24.35 0.00 6.13
310 521 3.381590 CGTCCAGGAGATTGACTATGTCA 59.618 47.826 0.00 0.00 41.09 3.58
320 531 2.761559 TGACTATGTCAAACACACGGG 58.238 47.619 0.00 0.00 39.78 5.28
322 533 0.442310 CTATGTCAAACACACGGGCG 59.558 55.000 0.00 0.00 38.04 6.13
370 581 1.852633 TCATGTCGACCTCCATGACT 58.147 50.000 14.12 0.00 41.77 3.41
371 582 1.751351 TCATGTCGACCTCCATGACTC 59.249 52.381 14.12 0.00 41.77 3.36
372 583 0.741326 ATGTCGACCTCCATGACTCG 59.259 55.000 14.12 0.00 33.81 4.18
373 584 0.608308 TGTCGACCTCCATGACTCGT 60.608 55.000 14.12 0.00 33.81 4.18
374 585 1.339342 TGTCGACCTCCATGACTCGTA 60.339 52.381 14.12 0.00 33.81 3.43
375 586 1.063764 GTCGACCTCCATGACTCGTAC 59.936 57.143 3.51 0.00 0.00 3.67
376 587 0.381089 CGACCTCCATGACTCGTACC 59.619 60.000 0.00 0.00 0.00 3.34
377 588 0.381089 GACCTCCATGACTCGTACCG 59.619 60.000 0.00 0.00 0.00 4.02
378 589 0.034767 ACCTCCATGACTCGTACCGA 60.035 55.000 0.00 0.00 0.00 4.69
379 590 1.100510 CCTCCATGACTCGTACCGAA 58.899 55.000 0.00 0.00 34.74 4.30
380 591 1.475280 CCTCCATGACTCGTACCGAAA 59.525 52.381 0.00 0.00 34.74 3.46
381 592 2.094390 CCTCCATGACTCGTACCGAAAA 60.094 50.000 0.00 0.00 34.74 2.29
382 593 3.581755 CTCCATGACTCGTACCGAAAAA 58.418 45.455 0.00 0.00 34.74 1.94
383 594 3.581755 TCCATGACTCGTACCGAAAAAG 58.418 45.455 0.00 0.00 34.74 2.27
384 595 3.006110 TCCATGACTCGTACCGAAAAAGT 59.994 43.478 0.00 0.00 34.74 2.66
385 596 3.367025 CCATGACTCGTACCGAAAAAGTC 59.633 47.826 0.00 0.00 34.74 3.01
386 597 3.996150 TGACTCGTACCGAAAAAGTCT 57.004 42.857 0.00 0.00 34.74 3.24
387 598 4.311816 TGACTCGTACCGAAAAAGTCTT 57.688 40.909 0.00 0.00 34.74 3.01
388 599 4.685924 TGACTCGTACCGAAAAAGTCTTT 58.314 39.130 0.00 0.00 34.74 2.52
389 600 4.741676 TGACTCGTACCGAAAAAGTCTTTC 59.258 41.667 0.00 0.00 34.74 2.62
391 602 2.472488 TCGTACCGAAAAAGTCTTTCGC 59.528 45.455 5.80 0.00 46.89 4.70
392 603 2.410646 CGTACCGAAAAAGTCTTTCGCC 60.411 50.000 5.80 0.00 46.89 5.54
393 604 0.949397 ACCGAAAAAGTCTTTCGCCC 59.051 50.000 5.80 0.00 46.89 6.13
394 605 0.240145 CCGAAAAAGTCTTTCGCCCC 59.760 55.000 5.80 0.00 46.89 5.80
395 606 0.110373 CGAAAAAGTCTTTCGCCCCG 60.110 55.000 0.00 0.00 43.52 5.73
396 607 0.386858 GAAAAAGTCTTTCGCCCCGC 60.387 55.000 0.00 0.00 0.00 6.13
397 608 0.822121 AAAAAGTCTTTCGCCCCGCT 60.822 50.000 0.00 0.00 0.00 5.52
398 609 0.822121 AAAAGTCTTTCGCCCCGCTT 60.822 50.000 0.00 0.00 0.00 4.68
399 610 0.822121 AAAGTCTTTCGCCCCGCTTT 60.822 50.000 0.00 0.00 0.00 3.51
400 611 0.035739 AAGTCTTTCGCCCCGCTTTA 59.964 50.000 0.00 0.00 0.00 1.85
401 612 0.252197 AGTCTTTCGCCCCGCTTTAT 59.748 50.000 0.00 0.00 0.00 1.40
402 613 1.483415 AGTCTTTCGCCCCGCTTTATA 59.517 47.619 0.00 0.00 0.00 0.98
403 614 2.093341 AGTCTTTCGCCCCGCTTTATAA 60.093 45.455 0.00 0.00 0.00 0.98
404 615 2.679336 GTCTTTCGCCCCGCTTTATAAA 59.321 45.455 0.00 0.00 0.00 1.40
405 616 3.314357 GTCTTTCGCCCCGCTTTATAAAT 59.686 43.478 0.00 0.00 0.00 1.40
406 617 4.512571 GTCTTTCGCCCCGCTTTATAAATA 59.487 41.667 0.00 0.00 0.00 1.40
407 618 5.007921 GTCTTTCGCCCCGCTTTATAAATAA 59.992 40.000 0.00 0.00 0.00 1.40
408 619 5.589452 TCTTTCGCCCCGCTTTATAAATAAA 59.411 36.000 0.00 0.00 0.00 1.40
424 635 5.904362 AAATAAAGCAACCTCCATGACTC 57.096 39.130 0.00 0.00 0.00 3.36
425 636 2.957402 AAAGCAACCTCCATGACTCA 57.043 45.000 0.00 0.00 0.00 3.41
665 883 3.038946 CCAAACAATGGCGCATCAG 57.961 52.632 10.83 0.00 43.80 2.90
831 1055 2.044946 CTTCCAAGGCCTTCCCCG 60.045 66.667 17.29 3.99 0.00 5.73
882 1106 0.391228 CCTCAAAAACCAAACCCCCG 59.609 55.000 0.00 0.00 0.00 5.73
897 1121 1.884004 CCCGGTCGAACACAAACGT 60.884 57.895 0.00 0.00 0.00 3.99
941 1165 0.824109 CTTCCCTCATACCTGCGTGA 59.176 55.000 0.00 0.00 0.00 4.35
1006 1230 1.687494 GAGTTGCCGAGTCATGACGC 61.687 60.000 19.85 19.18 36.20 5.19
1011 1235 2.887568 CGAGTCATGACGCCCAGC 60.888 66.667 21.83 7.65 36.20 4.85
1032 1259 0.818296 CGTCCCTCTCGTCATCCTTT 59.182 55.000 0.00 0.00 0.00 3.11
1263 1512 1.009829 GTTCGATGGTCTCCATGTGC 58.990 55.000 5.98 0.00 45.26 4.57
1348 1597 2.767394 TGGGATGCAGAAATGGATTTGG 59.233 45.455 0.00 0.00 0.00 3.28
1422 1671 3.003763 GGTGTCTCCTCCGCCCTT 61.004 66.667 0.00 0.00 0.00 3.95
1483 1748 4.404507 AACGAGTGTACATGCAACATTC 57.595 40.909 0.00 11.91 32.10 2.67
1488 1753 5.576774 CGAGTGTACATGCAACATTCTTCTA 59.423 40.000 16.92 0.00 32.96 2.10
1505 1770 4.015163 TCTTCTATTCCTCCCTCCCTTCTT 60.015 45.833 0.00 0.00 0.00 2.52
1629 1914 1.880340 GATCGGCTGGCTTCTGTCG 60.880 63.158 0.00 0.00 38.50 4.35
1659 1944 1.989864 CACATCGTCGAATTCGTTCCA 59.010 47.619 25.93 10.85 40.80 3.53
1709 1994 0.901124 ATGGAGGTCACTCTCACTGC 59.099 55.000 0.00 0.00 43.46 4.40
1738 2024 5.010617 CACCACTAACACCAATAGGCTTTTT 59.989 40.000 0.00 0.00 39.06 1.94
1896 2182 2.225068 TCTTCATTCCGCGATCCTTC 57.775 50.000 8.23 0.00 0.00 3.46
1991 2277 3.216800 ACAAGAGTACTGGTACGTGTCA 58.783 45.455 0.00 0.00 40.80 3.58
2186 2472 2.306805 TGTCCTTGCACAGATGGAGATT 59.693 45.455 0.00 0.00 0.00 2.40
2497 2783 6.264292 CCATAACCGATGATTATTTTGACCCA 59.736 38.462 0.00 0.00 37.82 4.51
2638 2924 2.097038 CGGCGTCAGCTTGGAGAAG 61.097 63.158 0.00 0.00 44.37 2.85
2757 3046 6.469410 TCCAATACAACAAGGTACCACTTAG 58.531 40.000 15.94 3.35 0.00 2.18
2758 3047 6.043474 TCCAATACAACAAGGTACCACTTAGT 59.957 38.462 15.94 9.43 0.00 2.24
2759 3048 7.235193 TCCAATACAACAAGGTACCACTTAGTA 59.765 37.037 15.94 11.33 0.00 1.82
2772 3061 6.852420 ACCACTTAGTACATAGAGAAGCAA 57.148 37.500 0.00 0.00 0.00 3.91
2809 3100 2.430751 CGACGTGCTGCAGTGCTA 60.431 61.111 17.60 1.74 0.00 3.49
2822 3113 2.848302 GCAGTGCTAATTTTTAGCTGCG 59.152 45.455 17.41 8.60 40.95 5.18
2890 3181 1.691434 GTTGGGTTTGCCATCTTGGAA 59.309 47.619 0.00 0.00 40.96 3.53
2923 3214 0.389166 CTCTCGAGAGCTTGGCGTTT 60.389 55.000 28.40 0.00 35.13 3.60
2964 3255 0.454600 GACGTCCTCTATGCCGACAA 59.545 55.000 3.51 0.00 0.00 3.18
3024 3315 3.158676 GGCCTAGATTAGAGGACGACAT 58.841 50.000 0.00 0.00 35.99 3.06
3040 3331 2.160615 CGACATCACTGAGTCTCTCGTT 59.839 50.000 0.65 0.00 32.35 3.85
3155 3446 2.965831 CTGAAGAAGATCCCCCGTATCA 59.034 50.000 0.00 0.00 0.00 2.15
3256 3553 1.227853 GTGAGACGGGCAGTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
3273 3570 3.565307 TGGTTGTGGATCAAGAAGCTTT 58.435 40.909 10.24 0.00 36.66 3.51
3274 3571 3.960102 TGGTTGTGGATCAAGAAGCTTTT 59.040 39.130 10.24 0.00 36.66 2.27
3275 3572 4.037923 TGGTTGTGGATCAAGAAGCTTTTC 59.962 41.667 10.24 0.00 36.66 2.29
3276 3573 4.279420 GGTTGTGGATCAAGAAGCTTTTCT 59.721 41.667 0.00 0.00 36.66 2.52
3277 3574 5.456265 GTTGTGGATCAAGAAGCTTTTCTC 58.544 41.667 0.00 0.00 36.66 2.87
3278 3575 4.978099 TGTGGATCAAGAAGCTTTTCTCT 58.022 39.130 0.00 0.00 0.00 3.10
3279 3576 4.999950 TGTGGATCAAGAAGCTTTTCTCTC 59.000 41.667 0.00 0.00 0.00 3.20
3280 3577 4.092675 GTGGATCAAGAAGCTTTTCTCTCG 59.907 45.833 0.00 0.00 0.00 4.04
3281 3578 3.063316 GGATCAAGAAGCTTTTCTCTCGC 59.937 47.826 0.00 0.00 0.00 5.03
3282 3579 3.393089 TCAAGAAGCTTTTCTCTCGCT 57.607 42.857 0.00 0.00 35.09 4.93
3283 3580 3.062763 TCAAGAAGCTTTTCTCTCGCTG 58.937 45.455 0.00 0.00 33.64 5.18
3284 3581 2.091852 AGAAGCTTTTCTCTCGCTGG 57.908 50.000 0.00 0.00 33.64 4.85
3285 3582 1.620819 AGAAGCTTTTCTCTCGCTGGA 59.379 47.619 0.00 0.00 33.64 3.86
3286 3583 2.235898 AGAAGCTTTTCTCTCGCTGGAT 59.764 45.455 0.00 0.00 33.64 3.41
3287 3584 2.307934 AGCTTTTCTCTCGCTGGATC 57.692 50.000 0.00 0.00 31.82 3.36
3288 3585 1.552337 AGCTTTTCTCTCGCTGGATCA 59.448 47.619 0.00 0.00 31.82 2.92
3289 3586 2.027745 AGCTTTTCTCTCGCTGGATCAA 60.028 45.455 0.00 0.00 31.82 2.57
3290 3587 2.351111 GCTTTTCTCTCGCTGGATCAAG 59.649 50.000 0.00 0.00 0.00 3.02
3291 3588 3.854666 CTTTTCTCTCGCTGGATCAAGA 58.145 45.455 0.00 0.00 0.00 3.02
3292 3589 3.961480 TTTCTCTCGCTGGATCAAGAA 57.039 42.857 0.00 0.00 0.00 2.52
3293 3590 3.516981 TTCTCTCGCTGGATCAAGAAG 57.483 47.619 0.00 0.00 0.00 2.85
3294 3591 1.135915 TCTCTCGCTGGATCAAGAAGC 59.864 52.381 0.00 0.03 0.00 3.86
3295 3592 1.136695 CTCTCGCTGGATCAAGAAGCT 59.863 52.381 0.00 0.00 34.72 3.74
3296 3593 1.552337 TCTCGCTGGATCAAGAAGCTT 59.448 47.619 0.00 0.00 34.72 3.74
3297 3594 2.027745 TCTCGCTGGATCAAGAAGCTTT 60.028 45.455 0.00 0.00 34.72 3.51
3298 3595 2.746362 CTCGCTGGATCAAGAAGCTTTT 59.254 45.455 0.00 0.00 34.72 2.27
3299 3596 2.744202 TCGCTGGATCAAGAAGCTTTTC 59.256 45.455 0.00 0.00 34.72 2.29
3300 3597 2.746362 CGCTGGATCAAGAAGCTTTTCT 59.254 45.455 0.00 0.00 34.72 2.52
3301 3598 3.181512 CGCTGGATCAAGAAGCTTTTCTC 60.182 47.826 0.00 0.00 34.72 2.87
3302 3599 3.755378 GCTGGATCAAGAAGCTTTTCTCA 59.245 43.478 0.00 0.00 34.05 3.27
3303 3600 4.398673 GCTGGATCAAGAAGCTTTTCTCAT 59.601 41.667 0.00 0.00 34.05 2.90
3304 3601 5.587844 GCTGGATCAAGAAGCTTTTCTCATA 59.412 40.000 0.00 0.00 34.05 2.15
3305 3602 6.238429 GCTGGATCAAGAAGCTTTTCTCATAG 60.238 42.308 0.00 0.00 34.05 2.23
3306 3603 6.118170 TGGATCAAGAAGCTTTTCTCATAGG 58.882 40.000 0.00 0.00 0.00 2.57
3307 3604 6.118852 GGATCAAGAAGCTTTTCTCATAGGT 58.881 40.000 0.00 0.00 0.00 3.08
3308 3605 6.038050 GGATCAAGAAGCTTTTCTCATAGGTG 59.962 42.308 0.00 0.00 0.00 4.00
3309 3606 6.114187 TCAAGAAGCTTTTCTCATAGGTGA 57.886 37.500 0.00 0.00 0.00 4.02
3317 3614 4.776965 TCATAGGTGAGACGGGCA 57.223 55.556 0.00 0.00 0.00 5.36
3318 3615 2.504920 TCATAGGTGAGACGGGCAG 58.495 57.895 0.00 0.00 0.00 4.85
3319 3616 0.324368 TCATAGGTGAGACGGGCAGT 60.324 55.000 0.00 0.00 0.00 4.40
3320 3617 0.537188 CATAGGTGAGACGGGCAGTT 59.463 55.000 0.00 0.00 0.00 3.16
3321 3618 0.537188 ATAGGTGAGACGGGCAGTTG 59.463 55.000 0.00 0.00 0.00 3.16
3322 3619 1.541310 TAGGTGAGACGGGCAGTTGG 61.541 60.000 0.00 0.00 0.00 3.77
3323 3620 2.426023 GTGAGACGGGCAGTTGGT 59.574 61.111 0.00 0.00 0.00 3.67
3324 3621 1.227853 GTGAGACGGGCAGTTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
3325 3622 1.227823 TGAGACGGGCAGTTGGTTG 60.228 57.895 0.00 0.00 0.00 3.77
3326 3623 1.227853 GAGACGGGCAGTTGGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
3327 3624 1.507141 GAGACGGGCAGTTGGTTGTG 61.507 60.000 0.00 0.00 0.00 3.33
3328 3625 2.518349 ACGGGCAGTTGGTTGTGG 60.518 61.111 0.00 0.00 0.00 4.17
3329 3626 2.203280 CGGGCAGTTGGTTGTGGA 60.203 61.111 0.00 0.00 0.00 4.02
3330 3627 1.603455 CGGGCAGTTGGTTGTGGAT 60.603 57.895 0.00 0.00 0.00 3.41
3331 3628 1.586154 CGGGCAGTTGGTTGTGGATC 61.586 60.000 0.00 0.00 0.00 3.36
3332 3629 0.539438 GGGCAGTTGGTTGTGGATCA 60.539 55.000 0.00 0.00 0.00 2.92
3333 3630 1.327303 GGCAGTTGGTTGTGGATCAA 58.673 50.000 0.00 0.00 0.00 2.57
3334 3631 1.270550 GGCAGTTGGTTGTGGATCAAG 59.729 52.381 0.00 0.00 36.66 3.02
3335 3632 2.229792 GCAGTTGGTTGTGGATCAAGA 58.770 47.619 0.00 0.00 36.66 3.02
3336 3633 2.622942 GCAGTTGGTTGTGGATCAAGAA 59.377 45.455 0.00 0.00 36.66 2.52
3337 3634 3.304928 GCAGTTGGTTGTGGATCAAGAAG 60.305 47.826 0.00 0.00 36.66 2.85
3338 3635 2.887152 AGTTGGTTGTGGATCAAGAAGC 59.113 45.455 2.27 2.27 36.66 3.86
3339 3636 2.887152 GTTGGTTGTGGATCAAGAAGCT 59.113 45.455 10.24 0.00 36.66 3.74
3340 3637 3.228188 TGGTTGTGGATCAAGAAGCTT 57.772 42.857 10.24 0.00 36.66 3.74
3346 3643 3.748048 TGTGGATCAAGAAGCTTTTCTCG 59.252 43.478 0.00 0.00 0.00 4.04
3438 3738 4.287067 AGCTCAAAGTAAGTGAGATTGGGA 59.713 41.667 5.63 0.00 44.44 4.37
3452 3752 6.825721 GTGAGATTGGGAAAGAAGTGATGTAT 59.174 38.462 0.00 0.00 0.00 2.29
3499 3799 5.345202 GCTGCAATGAAATTAGCATAGCATC 59.655 40.000 0.00 0.00 37.73 3.91
3631 3931 4.160594 GTCGCGTTCCGGATTTTATTTTT 58.839 39.130 4.15 0.00 37.59 1.94
3822 4123 1.459450 CCGGTCAATTTTCGTCCCAT 58.541 50.000 0.00 0.00 0.00 4.00
3825 4126 2.682856 CGGTCAATTTTCGTCCCATCAT 59.317 45.455 0.00 0.00 0.00 2.45
4221 4535 6.035650 ACATTCACCACTATTTATCAACGTCG 59.964 38.462 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.181573 CGTTTTCTTTTTAGCCTGCATATAAGA 58.818 33.333 0.00 0.00 0.00 2.10
5 6 7.432252 CCGTTTTCTTTTTAGCCTGCATATAAG 59.568 37.037 0.00 0.00 0.00 1.73
6 7 7.121463 TCCGTTTTCTTTTTAGCCTGCATATAA 59.879 33.333 0.00 0.00 0.00 0.98
7 8 6.600032 TCCGTTTTCTTTTTAGCCTGCATATA 59.400 34.615 0.00 0.00 0.00 0.86
8 9 5.417580 TCCGTTTTCTTTTTAGCCTGCATAT 59.582 36.000 0.00 0.00 0.00 1.78
9 10 4.762765 TCCGTTTTCTTTTTAGCCTGCATA 59.237 37.500 0.00 0.00 0.00 3.14
10 11 3.572255 TCCGTTTTCTTTTTAGCCTGCAT 59.428 39.130 0.00 0.00 0.00 3.96
11 12 2.952978 TCCGTTTTCTTTTTAGCCTGCA 59.047 40.909 0.00 0.00 0.00 4.41
12 13 3.565516 CTCCGTTTTCTTTTTAGCCTGC 58.434 45.455 0.00 0.00 0.00 4.85
13 14 3.057526 CCCTCCGTTTTCTTTTTAGCCTG 60.058 47.826 0.00 0.00 0.00 4.85
14 15 3.154710 CCCTCCGTTTTCTTTTTAGCCT 58.845 45.455 0.00 0.00 0.00 4.58
15 16 3.151554 TCCCTCCGTTTTCTTTTTAGCC 58.848 45.455 0.00 0.00 0.00 3.93
16 17 3.819337 ACTCCCTCCGTTTTCTTTTTAGC 59.181 43.478 0.00 0.00 0.00 3.09
17 18 5.119743 CGTACTCCCTCCGTTTTCTTTTTAG 59.880 44.000 0.00 0.00 0.00 1.85
18 19 4.990426 CGTACTCCCTCCGTTTTCTTTTTA 59.010 41.667 0.00 0.00 0.00 1.52
19 20 3.811497 CGTACTCCCTCCGTTTTCTTTTT 59.189 43.478 0.00 0.00 0.00 1.94
20 21 3.181462 ACGTACTCCCTCCGTTTTCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
21 22 2.366590 ACGTACTCCCTCCGTTTTCTTT 59.633 45.455 0.00 0.00 0.00 2.52
22 23 1.966354 ACGTACTCCCTCCGTTTTCTT 59.034 47.619 0.00 0.00 0.00 2.52
23 24 1.271656 CACGTACTCCCTCCGTTTTCT 59.728 52.381 0.00 0.00 31.46 2.52
24 25 1.000171 ACACGTACTCCCTCCGTTTTC 60.000 52.381 0.00 0.00 31.46 2.29
25 26 1.000171 GACACGTACTCCCTCCGTTTT 60.000 52.381 0.00 0.00 31.46 2.43
26 27 0.600057 GACACGTACTCCCTCCGTTT 59.400 55.000 0.00 0.00 31.46 3.60
27 28 0.251077 AGACACGTACTCCCTCCGTT 60.251 55.000 0.00 0.00 31.46 4.44
28 29 0.676151 GAGACACGTACTCCCTCCGT 60.676 60.000 9.80 0.00 34.71 4.69
29 30 0.392729 AGAGACACGTACTCCCTCCG 60.393 60.000 15.23 0.00 35.27 4.63
30 31 1.381522 GAGAGACACGTACTCCCTCC 58.618 60.000 15.23 3.33 35.27 4.30
31 32 1.339824 TGGAGAGACACGTACTCCCTC 60.340 57.143 19.84 10.17 46.57 4.30
32 33 0.697079 TGGAGAGACACGTACTCCCT 59.303 55.000 19.84 2.86 46.57 4.20
33 34 0.810016 GTGGAGAGACACGTACTCCC 59.190 60.000 19.84 17.56 46.57 4.30
35 36 0.810016 GGGTGGAGAGACACGTACTC 59.190 60.000 12.18 12.18 42.23 2.59
36 37 0.404812 AGGGTGGAGAGACACGTACT 59.595 55.000 0.00 0.00 42.23 2.73
44 45 2.111384 GCATCAGTTAGGGTGGAGAGA 58.889 52.381 0.00 0.00 0.00 3.10
68 69 3.106609 TTTGGGTGCCCCTGACCA 61.107 61.111 11.10 0.00 45.70 4.02
69 70 2.600470 GTTTGGGTGCCCCTGACC 60.600 66.667 11.10 0.00 45.70 4.02
71 72 2.243774 TTTGGTTTGGGTGCCCCTGA 62.244 55.000 11.10 0.00 45.70 3.86
72 73 1.126948 ATTTGGTTTGGGTGCCCCTG 61.127 55.000 11.10 0.00 45.70 4.45
73 74 0.489567 TATTTGGTTTGGGTGCCCCT 59.510 50.000 11.10 0.00 45.70 4.79
76 77 2.984562 CCATTATTTGGTTTGGGTGCC 58.015 47.619 0.00 0.00 40.99 5.01
109 112 9.931210 CTTCCTTTATTAATTATCGTTGGTGAC 57.069 33.333 0.00 0.00 0.00 3.67
133 136 1.002544 GTGCAGGTGGTTAGCTCTCTT 59.997 52.381 0.00 0.00 30.85 2.85
175 178 6.377996 TCAGATATGGTTTTTGAGAATGTGGG 59.622 38.462 0.00 0.00 0.00 4.61
177 180 8.133627 GGATCAGATATGGTTTTTGAGAATGTG 58.866 37.037 0.00 0.00 0.00 3.21
178 181 7.835682 TGGATCAGATATGGTTTTTGAGAATGT 59.164 33.333 0.00 0.00 0.00 2.71
179 182 8.229253 TGGATCAGATATGGTTTTTGAGAATG 57.771 34.615 0.00 0.00 0.00 2.67
180 183 8.827832 TTGGATCAGATATGGTTTTTGAGAAT 57.172 30.769 0.00 0.00 0.00 2.40
181 184 7.340232 CCTTGGATCAGATATGGTTTTTGAGAA 59.660 37.037 0.00 0.00 0.00 2.87
182 185 6.830324 CCTTGGATCAGATATGGTTTTTGAGA 59.170 38.462 0.00 0.00 0.00 3.27
183 186 6.040166 CCCTTGGATCAGATATGGTTTTTGAG 59.960 42.308 0.00 0.00 0.00 3.02
184 187 5.893255 CCCTTGGATCAGATATGGTTTTTGA 59.107 40.000 0.00 0.00 0.00 2.69
185 188 5.069516 CCCCTTGGATCAGATATGGTTTTTG 59.930 44.000 0.00 0.00 0.00 2.44
186 189 5.211201 CCCCTTGGATCAGATATGGTTTTT 58.789 41.667 0.00 0.00 0.00 1.94
187 190 4.387891 CCCCCTTGGATCAGATATGGTTTT 60.388 45.833 0.00 0.00 35.39 2.43
188 191 3.140895 CCCCCTTGGATCAGATATGGTTT 59.859 47.826 0.00 0.00 35.39 3.27
189 192 2.718609 CCCCCTTGGATCAGATATGGTT 59.281 50.000 0.00 0.00 35.39 3.67
190 193 2.352371 CCCCCTTGGATCAGATATGGT 58.648 52.381 0.00 0.00 35.39 3.55
191 194 1.005215 GCCCCCTTGGATCAGATATGG 59.995 57.143 0.00 0.00 35.39 2.74
192 195 1.339438 CGCCCCCTTGGATCAGATATG 60.339 57.143 0.00 0.00 35.39 1.78
193 196 0.987294 CGCCCCCTTGGATCAGATAT 59.013 55.000 0.00 0.00 35.39 1.63
194 197 1.127567 CCGCCCCCTTGGATCAGATA 61.128 60.000 0.00 0.00 35.39 1.98
195 198 2.455565 CCGCCCCCTTGGATCAGAT 61.456 63.158 0.00 0.00 35.39 2.90
196 199 3.089874 CCGCCCCCTTGGATCAGA 61.090 66.667 0.00 0.00 35.39 3.27
197 200 3.411517 ACCGCCCCCTTGGATCAG 61.412 66.667 0.00 0.00 35.39 2.90
198 201 3.727258 CACCGCCCCCTTGGATCA 61.727 66.667 0.00 0.00 35.39 2.92
212 215 2.336400 GATTTTCCCGCCGATGCACC 62.336 60.000 0.00 0.00 37.32 5.01
213 216 1.064134 GATTTTCCCGCCGATGCAC 59.936 57.895 0.00 0.00 37.32 4.57
214 217 0.179234 TAGATTTTCCCGCCGATGCA 59.821 50.000 0.00 0.00 37.32 3.96
215 218 0.868406 CTAGATTTTCCCGCCGATGC 59.132 55.000 0.00 0.00 0.00 3.91
216 219 0.868406 GCTAGATTTTCCCGCCGATG 59.132 55.000 0.00 0.00 0.00 3.84
217 220 0.250338 GGCTAGATTTTCCCGCCGAT 60.250 55.000 0.00 0.00 0.00 4.18
218 221 1.145377 GGCTAGATTTTCCCGCCGA 59.855 57.895 0.00 0.00 0.00 5.54
219 222 0.391597 TAGGCTAGATTTTCCCGCCG 59.608 55.000 0.00 0.00 45.16 6.46
220 223 1.140252 TGTAGGCTAGATTTTCCCGCC 59.860 52.381 0.00 0.00 40.99 6.13
221 224 2.614829 TGTAGGCTAGATTTTCCCGC 57.385 50.000 0.00 0.00 0.00 6.13
222 225 2.808543 GCATGTAGGCTAGATTTTCCCG 59.191 50.000 0.66 0.00 0.00 5.14
223 226 3.817647 CAGCATGTAGGCTAGATTTTCCC 59.182 47.826 0.66 0.00 43.68 3.97
239 242 2.654749 TGTCTAGGAACGACAGCATG 57.345 50.000 0.00 0.00 46.00 4.06
244 247 0.601558 GGCACTGTCTAGGAACGACA 59.398 55.000 0.00 0.00 38.94 4.35
245 248 0.456312 CGGCACTGTCTAGGAACGAC 60.456 60.000 0.00 0.00 0.00 4.34
246 249 1.592400 CCGGCACTGTCTAGGAACGA 61.592 60.000 0.00 0.00 0.00 3.85
247 250 1.153823 CCGGCACTGTCTAGGAACG 60.154 63.158 0.00 0.00 0.00 3.95
248 251 1.448013 GCCGGCACTGTCTAGGAAC 60.448 63.158 24.80 0.00 0.00 3.62
249 252 2.978824 GCCGGCACTGTCTAGGAA 59.021 61.111 24.80 0.00 0.00 3.36
250 253 3.449227 CGCCGGCACTGTCTAGGA 61.449 66.667 28.98 0.00 0.00 2.94
251 254 4.514577 CCGCCGGCACTGTCTAGG 62.515 72.222 28.98 13.15 0.00 3.02
265 268 2.725203 TAATCACCATAGGCCGCCGC 62.725 60.000 3.05 0.00 0.00 6.53
266 269 0.670546 CTAATCACCATAGGCCGCCG 60.671 60.000 3.05 0.00 0.00 6.46
267 270 0.685097 TCTAATCACCATAGGCCGCC 59.315 55.000 0.00 0.00 0.00 6.13
268 271 2.143925 GTTCTAATCACCATAGGCCGC 58.856 52.381 0.00 0.00 0.00 6.53
269 272 2.223971 ACGTTCTAATCACCATAGGCCG 60.224 50.000 0.00 0.00 0.00 6.13
270 273 3.391049 GACGTTCTAATCACCATAGGCC 58.609 50.000 0.00 0.00 0.00 5.19
310 521 2.515057 TTGAGCGCCCGTGTGTTT 60.515 55.556 2.29 0.00 0.00 2.83
313 524 4.988598 AGGTTGAGCGCCCGTGTG 62.989 66.667 2.29 0.00 0.00 3.82
320 531 4.410743 GCAGGCAAGGTTGAGCGC 62.411 66.667 0.00 0.00 0.00 5.92
322 533 1.006922 GTTGCAGGCAAGGTTGAGC 60.007 57.895 6.99 0.00 36.52 4.26
377 588 0.386858 GCGGGGCGAAAGACTTTTTC 60.387 55.000 1.12 0.00 40.87 2.29
378 589 0.822121 AGCGGGGCGAAAGACTTTTT 60.822 50.000 1.12 0.00 40.87 1.94
379 590 0.822121 AAGCGGGGCGAAAGACTTTT 60.822 50.000 1.12 0.00 40.87 2.27
380 591 0.822121 AAAGCGGGGCGAAAGACTTT 60.822 50.000 0.00 0.00 40.87 2.66
381 592 0.035739 TAAAGCGGGGCGAAAGACTT 59.964 50.000 0.00 0.00 40.87 3.01
382 593 0.252197 ATAAAGCGGGGCGAAAGACT 59.748 50.000 0.00 0.00 40.87 3.24
383 594 1.944032 TATAAAGCGGGGCGAAAGAC 58.056 50.000 0.00 0.00 39.70 3.01
384 595 2.695127 TTATAAAGCGGGGCGAAAGA 57.305 45.000 0.00 0.00 0.00 2.52
385 596 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
386 597 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
387 598 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
397 608 9.474313 AGTCATGGAGGTTGCTTTATTTATAAA 57.526 29.630 0.00 0.00 0.00 1.40
398 609 9.120538 GAGTCATGGAGGTTGCTTTATTTATAA 57.879 33.333 0.00 0.00 0.00 0.98
399 610 8.271458 TGAGTCATGGAGGTTGCTTTATTTATA 58.729 33.333 0.00 0.00 0.00 0.98
400 611 7.118723 TGAGTCATGGAGGTTGCTTTATTTAT 58.881 34.615 0.00 0.00 0.00 1.40
401 612 6.480763 TGAGTCATGGAGGTTGCTTTATTTA 58.519 36.000 0.00 0.00 0.00 1.40
402 613 5.324409 TGAGTCATGGAGGTTGCTTTATTT 58.676 37.500 0.00 0.00 0.00 1.40
403 614 4.922206 TGAGTCATGGAGGTTGCTTTATT 58.078 39.130 0.00 0.00 0.00 1.40
404 615 4.574674 TGAGTCATGGAGGTTGCTTTAT 57.425 40.909 0.00 0.00 0.00 1.40
405 616 4.574674 ATGAGTCATGGAGGTTGCTTTA 57.425 40.909 4.39 0.00 0.00 1.85
406 617 2.957402 TGAGTCATGGAGGTTGCTTT 57.043 45.000 0.00 0.00 0.00 3.51
407 618 4.785346 ATATGAGTCATGGAGGTTGCTT 57.215 40.909 16.15 0.00 0.00 3.91
408 619 4.458397 CAATATGAGTCATGGAGGTTGCT 58.542 43.478 16.15 0.00 0.00 3.91
409 620 3.004106 GCAATATGAGTCATGGAGGTTGC 59.996 47.826 16.15 17.18 33.66 4.17
410 621 4.036027 GTGCAATATGAGTCATGGAGGTTG 59.964 45.833 16.15 12.41 0.00 3.77
411 622 4.202441 GTGCAATATGAGTCATGGAGGTT 58.798 43.478 16.15 0.59 0.00 3.50
424 635 4.526970 AGAGGGTTTAGTGGTGCAATATG 58.473 43.478 0.00 0.00 0.00 1.78
425 636 4.475016 AGAGAGGGTTTAGTGGTGCAATAT 59.525 41.667 0.00 0.00 0.00 1.28
556 773 7.920160 TTGCCTTGATTGTTTTCTTTCTTTT 57.080 28.000 0.00 0.00 0.00 2.27
687 910 1.388065 CGTGGTTTTGTTGGGGAGCA 61.388 55.000 0.00 0.00 0.00 4.26
882 1106 1.147557 ACGGACGTTTGTGTTCGACC 61.148 55.000 1.01 0.00 43.64 4.79
897 1121 4.357947 GCTCGACTGGTGCACGGA 62.358 66.667 11.45 0.00 35.27 4.69
941 1165 2.711922 GGGTGTGGCGAGATCGAGT 61.712 63.158 6.39 0.00 43.02 4.18
1011 1235 2.491022 GGATGACGAGAGGGACGGG 61.491 68.421 0.00 0.00 34.93 5.28
1067 1300 3.927548 TGCTGCACTGCGAGGACA 61.928 61.111 0.00 0.00 35.36 4.02
1209 1451 1.443363 GTCCCGGACGACGTTCTTC 60.443 63.158 0.73 0.00 42.24 2.87
1273 1522 2.582728 TACGAACAAACTGTCACCGT 57.417 45.000 0.00 0.00 35.88 4.83
1348 1597 2.095053 GCTTGGCGAATCTCTCTTTCAC 59.905 50.000 0.00 0.00 0.00 3.18
1419 1668 2.795231 TGGAATTGGAGAGAGCAAGG 57.205 50.000 0.00 0.00 0.00 3.61
1422 1671 2.573009 TGTGATGGAATTGGAGAGAGCA 59.427 45.455 0.00 0.00 0.00 4.26
1483 1748 3.935172 AGAAGGGAGGGAGGAATAGAAG 58.065 50.000 0.00 0.00 0.00 2.85
1488 1753 2.980699 AGAAGAAGGGAGGGAGGAAT 57.019 50.000 0.00 0.00 0.00 3.01
1505 1770 6.593268 TGCCAAATTTCATCATGAAGAAGA 57.407 33.333 12.69 5.92 37.70 2.87
1659 1944 0.606401 CCTCGGACACCTGTTGCAAT 60.606 55.000 0.59 0.00 0.00 3.56
1709 1994 2.631160 TTGGTGTTAGTGGTGTGAGG 57.369 50.000 0.00 0.00 0.00 3.86
1738 2024 6.996509 TGCAATATATGTGATGAGTGCTAGA 58.003 36.000 0.00 0.00 0.00 2.43
1843 2129 2.110352 TACGAGGAGCATCGCGTCA 61.110 57.895 5.77 0.00 46.60 4.35
1896 2182 4.275936 ACTTTGACTCGGGAAATTGTTGAG 59.724 41.667 0.00 0.00 0.00 3.02
2090 2376 1.965754 GCTGGAGCCACTTCCTCGAT 61.966 60.000 0.00 0.00 38.12 3.59
2186 2472 3.300388 AGCCTCGATGTATTCTTCTGGA 58.700 45.455 0.00 0.00 0.00 3.86
2284 2570 7.575414 TCAAATTTGAACTAAAGCCACACTA 57.425 32.000 18.45 0.00 33.55 2.74
2310 2596 5.127194 TGTCGTGGATCTAGTTCAGCTTTAT 59.873 40.000 3.30 0.00 0.00 1.40
2326 2612 3.269538 TCCAAAAGAAAGTGTCGTGGA 57.730 42.857 0.61 0.61 35.45 4.02
2497 2783 2.363297 GGAGTCCAGGAGTCCGTTT 58.637 57.895 25.35 0.00 41.53 3.60
2757 3046 7.806690 TGAAACATTGTTGCTTCTCTATGTAC 58.193 34.615 8.94 0.00 32.05 2.90
2758 3047 7.661437 ACTGAAACATTGTTGCTTCTCTATGTA 59.339 33.333 8.94 0.00 32.05 2.29
2759 3048 6.488006 ACTGAAACATTGTTGCTTCTCTATGT 59.512 34.615 8.94 0.00 33.20 2.29
2772 3061 3.380004 TCGGAAAGCAACTGAAACATTGT 59.620 39.130 0.00 0.00 0.00 2.71
2822 3113 0.790814 GGAAACGAGTACTGCAGCAC 59.209 55.000 15.27 12.04 0.00 4.40
2835 3126 5.551760 AAGAGCACATTGAATAGGAAACG 57.448 39.130 0.00 0.00 0.00 3.60
2890 3181 1.040339 CGAGAGCCCTGGAGTAGCTT 61.040 60.000 0.00 0.00 36.87 3.74
2923 3214 1.080093 GATCCGTGACAGAACCGCA 60.080 57.895 0.00 0.00 0.00 5.69
2964 3255 2.437895 TCGGATCCTGAGCGACGT 60.438 61.111 10.75 0.00 0.00 4.34
3010 3301 4.274147 ACTCAGTGATGTCGTCCTCTAAT 58.726 43.478 0.00 0.00 0.00 1.73
3024 3315 1.531578 CGACAACGAGAGACTCAGTGA 59.468 52.381 5.02 0.00 42.66 3.41
3071 3362 1.274596 CAGCAAAATGAATCGCTGGC 58.725 50.000 0.00 0.00 46.37 4.85
3122 3413 4.093952 CTTCAGCTTGCCACCGCG 62.094 66.667 0.00 0.00 38.08 6.46
3155 3446 2.484417 CGTGCATAGATTTCCTCCTGCT 60.484 50.000 0.00 0.00 35.72 4.24
3256 3553 4.978099 AGAGAAAAGCTTCTTGATCCACA 58.022 39.130 0.00 0.00 42.19 4.17
3273 3570 2.417924 GCTTCTTGATCCAGCGAGAGAA 60.418 50.000 0.00 0.00 30.30 2.87
3274 3571 1.135915 GCTTCTTGATCCAGCGAGAGA 59.864 52.381 0.00 0.00 30.30 3.10
3275 3572 1.136695 AGCTTCTTGATCCAGCGAGAG 59.863 52.381 0.00 0.00 38.66 3.20
3276 3573 1.189752 AGCTTCTTGATCCAGCGAGA 58.810 50.000 0.00 0.00 38.66 4.04
3277 3574 2.021355 AAGCTTCTTGATCCAGCGAG 57.979 50.000 0.00 0.00 38.66 5.03
3278 3575 2.479566 AAAGCTTCTTGATCCAGCGA 57.520 45.000 0.00 0.00 38.66 4.93
3279 3576 2.746362 AGAAAAGCTTCTTGATCCAGCG 59.254 45.455 0.00 0.00 38.89 5.18
3280 3577 3.755378 TGAGAAAAGCTTCTTGATCCAGC 59.245 43.478 0.00 0.00 42.19 4.85
3281 3578 6.260493 CCTATGAGAAAAGCTTCTTGATCCAG 59.740 42.308 0.00 0.00 42.19 3.86
3282 3579 6.118170 CCTATGAGAAAAGCTTCTTGATCCA 58.882 40.000 0.00 0.00 42.19 3.41
3283 3580 6.038050 CACCTATGAGAAAAGCTTCTTGATCC 59.962 42.308 0.00 0.00 42.19 3.36
3284 3581 6.820656 TCACCTATGAGAAAAGCTTCTTGATC 59.179 38.462 0.00 0.00 42.19 2.92
3285 3582 6.715280 TCACCTATGAGAAAAGCTTCTTGAT 58.285 36.000 0.00 0.00 42.19 2.57
3286 3583 6.114187 TCACCTATGAGAAAAGCTTCTTGA 57.886 37.500 0.00 0.00 42.19 3.02
3300 3597 0.324368 ACTGCCCGTCTCACCTATGA 60.324 55.000 0.00 0.00 0.00 2.15
3301 3598 0.537188 AACTGCCCGTCTCACCTATG 59.463 55.000 0.00 0.00 0.00 2.23
3302 3599 0.537188 CAACTGCCCGTCTCACCTAT 59.463 55.000 0.00 0.00 0.00 2.57
3303 3600 1.541310 CCAACTGCCCGTCTCACCTA 61.541 60.000 0.00 0.00 0.00 3.08
3304 3601 2.743718 CAACTGCCCGTCTCACCT 59.256 61.111 0.00 0.00 0.00 4.00
3305 3602 2.358737 CCAACTGCCCGTCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
3306 3603 1.227853 AACCAACTGCCCGTCTCAC 60.228 57.895 0.00 0.00 0.00 3.51
3307 3604 1.227823 CAACCAACTGCCCGTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
3308 3605 1.227853 ACAACCAACTGCCCGTCTC 60.228 57.895 0.00 0.00 0.00 3.36
3309 3606 1.525995 CACAACCAACTGCCCGTCT 60.526 57.895 0.00 0.00 0.00 4.18
3310 3607 2.551912 CCACAACCAACTGCCCGTC 61.552 63.158 0.00 0.00 0.00 4.79
3311 3608 2.351924 ATCCACAACCAACTGCCCGT 62.352 55.000 0.00 0.00 0.00 5.28
3312 3609 1.586154 GATCCACAACCAACTGCCCG 61.586 60.000 0.00 0.00 0.00 6.13
3313 3610 0.539438 TGATCCACAACCAACTGCCC 60.539 55.000 0.00 0.00 0.00 5.36
3314 3611 1.270550 CTTGATCCACAACCAACTGCC 59.729 52.381 0.00 0.00 34.56 4.85
3315 3612 2.229792 TCTTGATCCACAACCAACTGC 58.770 47.619 0.00 0.00 34.56 4.40
3316 3613 3.304928 GCTTCTTGATCCACAACCAACTG 60.305 47.826 0.00 0.00 34.56 3.16
3317 3614 2.887152 GCTTCTTGATCCACAACCAACT 59.113 45.455 0.00 0.00 34.56 3.16
3318 3615 2.887152 AGCTTCTTGATCCACAACCAAC 59.113 45.455 0.00 0.00 34.56 3.77
3319 3616 3.228188 AGCTTCTTGATCCACAACCAA 57.772 42.857 0.00 0.00 34.56 3.67
3320 3617 2.957402 AGCTTCTTGATCCACAACCA 57.043 45.000 0.00 0.00 34.56 3.67
3321 3618 4.279420 AGAAAAGCTTCTTGATCCACAACC 59.721 41.667 0.00 0.00 38.89 3.77
3322 3619 5.444663 AGAAAAGCTTCTTGATCCACAAC 57.555 39.130 0.00 0.00 38.89 3.32
3323 3620 4.214119 CGAGAAAAGCTTCTTGATCCACAA 59.786 41.667 0.00 0.00 43.42 3.33
3324 3621 3.748048 CGAGAAAAGCTTCTTGATCCACA 59.252 43.478 0.00 0.00 43.42 4.17
3325 3622 3.748568 ACGAGAAAAGCTTCTTGATCCAC 59.251 43.478 9.29 0.00 43.42 4.02
3326 3623 4.008074 ACGAGAAAAGCTTCTTGATCCA 57.992 40.909 9.29 0.00 43.42 3.41
3327 3624 4.568760 CCTACGAGAAAAGCTTCTTGATCC 59.431 45.833 9.29 0.00 43.42 3.36
3328 3625 5.062809 CACCTACGAGAAAAGCTTCTTGATC 59.937 44.000 9.29 0.05 43.42 2.92
3329 3626 4.932200 CACCTACGAGAAAAGCTTCTTGAT 59.068 41.667 9.29 0.00 43.42 2.57
3330 3627 4.038763 TCACCTACGAGAAAAGCTTCTTGA 59.961 41.667 9.29 0.00 43.42 3.02
3331 3628 4.307432 TCACCTACGAGAAAAGCTTCTTG 58.693 43.478 0.00 0.00 45.41 3.02
3332 3629 4.281182 TCTCACCTACGAGAAAAGCTTCTT 59.719 41.667 0.00 0.00 42.19 2.52
3333 3630 3.827302 TCTCACCTACGAGAAAAGCTTCT 59.173 43.478 0.00 0.00 44.93 2.85
3334 3631 3.921630 GTCTCACCTACGAGAAAAGCTTC 59.078 47.826 0.00 0.00 43.51 3.86
3335 3632 3.612004 CGTCTCACCTACGAGAAAAGCTT 60.612 47.826 0.00 0.00 43.51 3.74
3336 3633 2.095161 CGTCTCACCTACGAGAAAAGCT 60.095 50.000 0.00 0.00 43.51 3.74
3337 3634 2.251893 CGTCTCACCTACGAGAAAAGC 58.748 52.381 0.00 0.00 43.51 3.51
3338 3635 2.415625 CCCGTCTCACCTACGAGAAAAG 60.416 54.545 0.00 0.00 43.51 2.27
3339 3636 1.542915 CCCGTCTCACCTACGAGAAAA 59.457 52.381 0.00 0.00 43.51 2.29
3340 3637 1.171308 CCCGTCTCACCTACGAGAAA 58.829 55.000 0.00 0.00 43.51 2.52
3346 3643 0.320697 AAACTGCCCGTCTCACCTAC 59.679 55.000 0.00 0.00 0.00 3.18
3438 3738 9.319143 CGAGAAGGAAATATACATCACTTCTTT 57.681 33.333 0.00 0.00 42.09 2.52
3452 3752 4.017126 TCAGCTGAGACGAGAAGGAAATA 58.983 43.478 13.74 0.00 0.00 1.40
3499 3799 2.487762 TGATGCTTTAGGGCGACAAAAG 59.512 45.455 10.22 10.22 37.70 2.27
3631 3931 1.987855 GACCGGATGAGGTGGGACA 60.988 63.158 9.46 0.00 46.09 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.