Multiple sequence alignment - TraesCS3B01G304100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G304100 chr3B 100.000 3240 0 0 669 3908 488530016 488533255 0.000000e+00 5984
1 TraesCS3B01G304100 chr3B 97.487 796 18 1 3113 3908 391709225 391708432 0.000000e+00 1358
2 TraesCS3B01G304100 chr3B 100.000 416 0 0 1 416 488529348 488529763 0.000000e+00 769
3 TraesCS3B01G304100 chr3B 92.697 356 23 2 36 388 176615235 176614880 9.690000e-141 510
4 TraesCS3B01G304100 chr3B 85.526 152 20 2 1885 2035 654355682 654355532 1.450000e-34 158
5 TraesCS3B01G304100 chr3B 84.868 152 21 2 1885 2035 654346288 654346138 6.760000e-33 152
6 TraesCS3B01G304100 chr3D 93.795 1112 50 10 727 1828 374926311 374927413 0.000000e+00 1653
7 TraesCS3B01G304100 chr3D 93.956 1092 38 12 2029 3114 374927587 374928656 0.000000e+00 1626
8 TraesCS3B01G304100 chr3D 90.278 144 12 2 1900 2041 374927412 374927555 1.850000e-43 187
9 TraesCS3B01G304100 chr3D 85.211 142 20 1 1901 2042 570324462 570324322 1.130000e-30 145
10 TraesCS3B01G304100 chr3A 91.879 1022 51 17 727 1731 497646650 497647656 0.000000e+00 1399
11 TraesCS3B01G304100 chr3A 95.688 719 19 4 2399 3114 497648559 497649268 0.000000e+00 1146
12 TraesCS3B01G304100 chr3A 92.432 370 22 4 2029 2392 497647877 497648246 1.240000e-144 523
13 TraesCS3B01G304100 chr3A 89.362 141 13 2 1900 2038 497647703 497647843 4.010000e-40 176
14 TraesCS3B01G304100 chr3A 90.000 60 3 3 1771 1828 497647646 497647704 1.510000e-09 75
15 TraesCS3B01G304100 chr1B 97.744 798 14 3 3113 3908 57741990 57742785 0.000000e+00 1371
16 TraesCS3B01G304100 chr1B 91.392 395 20 6 1 388 641686606 641686219 2.670000e-146 529
17 TraesCS3B01G304100 chr2B 97.616 797 15 3 3114 3908 742108590 742107796 0.000000e+00 1363
18 TraesCS3B01G304100 chr2B 97.358 795 19 1 3114 3908 425836059 425835267 0.000000e+00 1351
19 TraesCS3B01G304100 chr2B 86.364 154 17 3 1885 2035 218292572 218292420 8.690000e-37 165
20 TraesCS3B01G304100 chr7B 97.358 795 19 1 3114 3908 23392369 23391577 0.000000e+00 1351
21 TraesCS3B01G304100 chr6A 97.358 795 19 1 3114 3908 538054315 538053523 0.000000e+00 1351
22 TraesCS3B01G304100 chr6B 97.129 801 17 5 3110 3908 633351387 633350591 0.000000e+00 1347
23 TraesCS3B01G304100 chr6B 90.709 409 18 4 1 390 703569180 703569587 9.620000e-146 527
24 TraesCS3B01G304100 chr6B 90.169 356 21 5 13 360 46270497 46270148 5.950000e-123 451
25 TraesCS3B01G304100 chr5B 97.240 797 16 2 3114 3908 641106230 641105438 0.000000e+00 1345
26 TraesCS3B01G304100 chr4A 97.118 798 21 1 3113 3908 694445364 694444567 0.000000e+00 1345
27 TraesCS3B01G304100 chr4A 87.681 138 13 4 1902 2036 674435028 674434892 1.450000e-34 158
28 TraesCS3B01G304100 chr2D 80.288 416 39 22 4 389 310443447 310443045 1.380000e-69 274
29 TraesCS3B01G304100 chrUn 78.729 409 45 19 11 389 402084650 402085046 6.530000e-58 235
30 TraesCS3B01G304100 chr4D 89.630 135 12 2 1901 2034 93611348 93611215 1.870000e-38 171
31 TraesCS3B01G304100 chr2A 85.507 138 16 4 1905 2038 249750655 249750792 1.460000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G304100 chr3B 488529348 488533255 3907 False 3376.500000 5984 100.000000 1 3908 2 chr3B.!!$F1 3907
1 TraesCS3B01G304100 chr3B 391708432 391709225 793 True 1358.000000 1358 97.487000 3113 3908 1 chr3B.!!$R2 795
2 TraesCS3B01G304100 chr3D 374926311 374928656 2345 False 1155.333333 1653 92.676333 727 3114 3 chr3D.!!$F1 2387
3 TraesCS3B01G304100 chr3A 497646650 497649268 2618 False 663.800000 1399 91.872200 727 3114 5 chr3A.!!$F1 2387
4 TraesCS3B01G304100 chr1B 57741990 57742785 795 False 1371.000000 1371 97.744000 3113 3908 1 chr1B.!!$F1 795
5 TraesCS3B01G304100 chr2B 742107796 742108590 794 True 1363.000000 1363 97.616000 3114 3908 1 chr2B.!!$R3 794
6 TraesCS3B01G304100 chr2B 425835267 425836059 792 True 1351.000000 1351 97.358000 3114 3908 1 chr2B.!!$R2 794
7 TraesCS3B01G304100 chr7B 23391577 23392369 792 True 1351.000000 1351 97.358000 3114 3908 1 chr7B.!!$R1 794
8 TraesCS3B01G304100 chr6A 538053523 538054315 792 True 1351.000000 1351 97.358000 3114 3908 1 chr6A.!!$R1 794
9 TraesCS3B01G304100 chr6B 633350591 633351387 796 True 1347.000000 1347 97.129000 3110 3908 1 chr6B.!!$R2 798
10 TraesCS3B01G304100 chr5B 641105438 641106230 792 True 1345.000000 1345 97.240000 3114 3908 1 chr5B.!!$R1 794
11 TraesCS3B01G304100 chr4A 694444567 694445364 797 True 1345.000000 1345 97.118000 3113 3908 1 chr4A.!!$R2 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 0.036875 GAGCAAGTGGCCTAGTGGTT 59.963 55.0 3.32 0.00 46.50 3.67 F
374 375 0.105593 GAGCAGAATCCATGGAGCGA 59.894 55.0 21.33 0.00 0.00 4.93 F
719 720 0.178987 ATCTGGCTATCTCCGGACGT 60.179 55.0 0.00 0.00 43.77 4.34 F
832 843 0.252513 TGCTGAGCAGGGTAGGGTAA 60.253 55.0 1.40 0.00 33.32 2.85 F
1882 1904 0.744874 TGAATGAGATCCGGACGTCC 59.255 55.0 25.28 25.28 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 1885 0.744874 GGACGTCCGGATCTCATTCA 59.255 55.000 20.85 0.00 0.00 2.57 R
2001 2025 1.102154 TGGTAAGCATGGCAAATCCG 58.898 50.000 0.00 0.00 37.80 4.18 R
2470 2852 1.893137 ACGCTGAGAATAGTGTGTCCA 59.107 47.619 0.00 0.00 39.74 4.02 R
2815 3197 2.041366 GATTCCGAAGCGCTGAAGCC 62.041 60.000 12.58 3.14 37.91 4.35 R
3675 4067 0.682209 ACATGCATCCTCCTGTTGGC 60.682 55.000 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.866010 GAATTCAGCAAATTTGGAAAAGGT 57.134 33.333 19.47 3.84 37.70 3.50
24 25 7.263100 GAATTCAGCAAATTTGGAAAAGGTT 57.737 32.000 19.47 6.83 37.70 3.50
25 26 8.376889 GAATTCAGCAAATTTGGAAAAGGTTA 57.623 30.769 19.47 0.00 37.70 2.85
26 27 8.744568 AATTCAGCAAATTTGGAAAAGGTTAA 57.255 26.923 19.47 0.00 33.69 2.01
27 28 8.922931 ATTCAGCAAATTTGGAAAAGGTTAAT 57.077 26.923 19.47 0.00 0.00 1.40
28 29 7.961325 TCAGCAAATTTGGAAAAGGTTAATC 57.039 32.000 19.47 0.00 0.00 1.75
29 30 6.644592 TCAGCAAATTTGGAAAAGGTTAATCG 59.355 34.615 19.47 0.00 0.00 3.34
30 31 6.644592 CAGCAAATTTGGAAAAGGTTAATCGA 59.355 34.615 19.47 0.00 0.00 3.59
31 32 7.170658 CAGCAAATTTGGAAAAGGTTAATCGAA 59.829 33.333 19.47 0.00 0.00 3.71
32 33 7.877612 AGCAAATTTGGAAAAGGTTAATCGAAT 59.122 29.630 19.47 0.00 0.00 3.34
33 34 9.145865 GCAAATTTGGAAAAGGTTAATCGAATA 57.854 29.630 19.47 0.00 0.00 1.75
75 76 9.965824 AATATGAAAAGAAAAAGTTCATCGTGT 57.034 25.926 1.62 0.00 40.32 4.49
76 77 9.965824 ATATGAAAAGAAAAAGTTCATCGTGTT 57.034 25.926 1.62 0.00 40.32 3.32
77 78 8.702163 ATGAAAAGAAAAAGTTCATCGTGTTT 57.298 26.923 0.00 0.00 37.41 2.83
78 79 7.948137 TGAAAAGAAAAAGTTCATCGTGTTTG 58.052 30.769 0.00 0.00 36.09 2.93
79 80 7.810282 TGAAAAGAAAAAGTTCATCGTGTTTGA 59.190 29.630 0.00 0.00 36.09 2.69
80 81 8.527567 AAAAGAAAAAGTTCATCGTGTTTGAA 57.472 26.923 0.00 0.00 36.09 2.69
81 82 8.527567 AAAGAAAAAGTTCATCGTGTTTGAAA 57.472 26.923 0.00 0.00 35.03 2.69
82 83 8.527567 AAGAAAAAGTTCATCGTGTTTGAAAA 57.472 26.923 0.00 0.00 35.03 2.29
83 84 8.527567 AGAAAAAGTTCATCGTGTTTGAAAAA 57.472 26.923 0.00 0.00 35.03 1.94
172 173 8.877808 AGTTCATCAAAATTGAAAAGGAGTTC 57.122 30.769 0.00 0.00 41.13 3.01
173 174 8.477256 AGTTCATCAAAATTGAAAAGGAGTTCA 58.523 29.630 0.00 0.00 41.13 3.18
174 175 8.758715 GTTCATCAAAATTGAAAAGGAGTTCAG 58.241 33.333 0.00 0.00 41.13 3.02
175 176 8.010733 TCATCAAAATTGAAAAGGAGTTCAGT 57.989 30.769 0.00 0.00 41.13 3.41
176 177 7.922278 TCATCAAAATTGAAAAGGAGTTCAGTG 59.078 33.333 0.00 0.00 41.13 3.66
177 178 7.403312 TCAAAATTGAAAAGGAGTTCAGTGA 57.597 32.000 0.00 0.00 38.69 3.41
178 179 7.835822 TCAAAATTGAAAAGGAGTTCAGTGAA 58.164 30.769 0.08 0.08 38.69 3.18
179 180 8.477256 TCAAAATTGAAAAGGAGTTCAGTGAAT 58.523 29.630 9.18 0.00 38.69 2.57
180 181 9.101655 CAAAATTGAAAAGGAGTTCAGTGAATT 57.898 29.630 9.18 4.43 38.69 2.17
181 182 8.652810 AAATTGAAAAGGAGTTCAGTGAATTG 57.347 30.769 9.18 0.00 38.69 2.32
182 183 5.772825 TGAAAAGGAGTTCAGTGAATTGG 57.227 39.130 9.18 0.00 32.56 3.16
183 184 5.445069 TGAAAAGGAGTTCAGTGAATTGGA 58.555 37.500 9.18 0.00 32.56 3.53
184 185 5.890985 TGAAAAGGAGTTCAGTGAATTGGAA 59.109 36.000 9.18 0.00 32.56 3.53
185 186 6.379703 TGAAAAGGAGTTCAGTGAATTGGAAA 59.620 34.615 9.18 0.00 32.56 3.13
186 187 6.790232 AAAGGAGTTCAGTGAATTGGAAAA 57.210 33.333 9.18 0.00 0.00 2.29
187 188 6.790232 AAGGAGTTCAGTGAATTGGAAAAA 57.210 33.333 9.18 0.00 0.00 1.94
215 216 9.931710 GTTCGTCAATTTTAAAAATAACCATCG 57.068 29.630 4.44 3.33 0.00 3.84
216 217 9.894783 TTCGTCAATTTTAAAAATAACCATCGA 57.105 25.926 4.44 5.35 0.00 3.59
227 228 8.742554 AAAAATAACCATCGATTTGAGTTCAC 57.257 30.769 0.00 0.00 0.00 3.18
228 229 5.718649 ATAACCATCGATTTGAGTTCACG 57.281 39.130 0.00 0.00 0.00 4.35
229 230 1.732259 ACCATCGATTTGAGTTCACGC 59.268 47.619 0.00 0.00 0.00 5.34
230 231 1.731709 CCATCGATTTGAGTTCACGCA 59.268 47.619 0.00 0.00 0.00 5.24
231 232 2.352651 CCATCGATTTGAGTTCACGCAT 59.647 45.455 0.00 0.00 0.00 4.73
232 233 3.181507 CCATCGATTTGAGTTCACGCATT 60.182 43.478 0.00 0.00 0.00 3.56
233 234 4.033932 CCATCGATTTGAGTTCACGCATTA 59.966 41.667 0.00 0.00 0.00 1.90
234 235 5.447144 CCATCGATTTGAGTTCACGCATTAA 60.447 40.000 0.00 0.00 0.00 1.40
235 236 5.599359 TCGATTTGAGTTCACGCATTAAA 57.401 34.783 0.00 0.00 0.00 1.52
236 237 5.617609 TCGATTTGAGTTCACGCATTAAAG 58.382 37.500 0.00 0.00 0.00 1.85
237 238 5.407084 TCGATTTGAGTTCACGCATTAAAGA 59.593 36.000 0.00 0.00 0.00 2.52
238 239 6.073494 TCGATTTGAGTTCACGCATTAAAGAA 60.073 34.615 0.00 0.00 0.00 2.52
239 240 6.577055 CGATTTGAGTTCACGCATTAAAGAAA 59.423 34.615 0.00 0.00 0.00 2.52
240 241 7.408290 CGATTTGAGTTCACGCATTAAAGAAAC 60.408 37.037 0.00 0.00 0.00 2.78
241 242 4.768145 TGAGTTCACGCATTAAAGAAACG 58.232 39.130 0.00 0.00 0.00 3.60
242 243 4.141855 AGTTCACGCATTAAAGAAACGG 57.858 40.909 0.00 0.00 0.00 4.44
243 244 3.058501 AGTTCACGCATTAAAGAAACGGG 60.059 43.478 0.00 0.00 0.00 5.28
244 245 2.768698 TCACGCATTAAAGAAACGGGA 58.231 42.857 0.00 0.00 33.03 5.14
245 246 3.139850 TCACGCATTAAAGAAACGGGAA 58.860 40.909 0.00 0.00 32.42 3.97
246 247 3.564644 TCACGCATTAAAGAAACGGGAAA 59.435 39.130 0.00 0.00 32.42 3.13
247 248 4.036498 TCACGCATTAAAGAAACGGGAAAA 59.964 37.500 0.00 0.00 32.42 2.29
248 249 4.920927 CACGCATTAAAGAAACGGGAAAAT 59.079 37.500 0.00 0.00 0.00 1.82
249 250 6.072618 TCACGCATTAAAGAAACGGGAAAATA 60.073 34.615 0.00 0.00 32.42 1.40
250 251 6.583050 CACGCATTAAAGAAACGGGAAAATAA 59.417 34.615 0.00 0.00 0.00 1.40
251 252 7.115095 CACGCATTAAAGAAACGGGAAAATAAA 59.885 33.333 0.00 0.00 0.00 1.40
252 253 7.115236 ACGCATTAAAGAAACGGGAAAATAAAC 59.885 33.333 0.00 0.00 0.00 2.01
253 254 7.115095 CGCATTAAAGAAACGGGAAAATAAACA 59.885 33.333 0.00 0.00 0.00 2.83
254 255 8.218441 GCATTAAAGAAACGGGAAAATAAACAC 58.782 33.333 0.00 0.00 0.00 3.32
255 256 9.250624 CATTAAAGAAACGGGAAAATAAACACA 57.749 29.630 0.00 0.00 0.00 3.72
256 257 9.819267 ATTAAAGAAACGGGAAAATAAACACAA 57.181 25.926 0.00 0.00 0.00 3.33
257 258 9.649167 TTAAAGAAACGGGAAAATAAACACAAA 57.351 25.926 0.00 0.00 0.00 2.83
258 259 8.549338 AAAGAAACGGGAAAATAAACACAAAA 57.451 26.923 0.00 0.00 0.00 2.44
259 260 8.549338 AAGAAACGGGAAAATAAACACAAAAA 57.451 26.923 0.00 0.00 0.00 1.94
260 261 8.192068 AGAAACGGGAAAATAAACACAAAAAG 57.808 30.769 0.00 0.00 0.00 2.27
261 262 6.912203 AACGGGAAAATAAACACAAAAAGG 57.088 33.333 0.00 0.00 0.00 3.11
262 263 5.361427 ACGGGAAAATAAACACAAAAAGGG 58.639 37.500 0.00 0.00 0.00 3.95
263 264 5.128991 ACGGGAAAATAAACACAAAAAGGGA 59.871 36.000 0.00 0.00 0.00 4.20
264 265 6.049790 CGGGAAAATAAACACAAAAAGGGAA 58.950 36.000 0.00 0.00 0.00 3.97
265 266 6.539103 CGGGAAAATAAACACAAAAAGGGAAA 59.461 34.615 0.00 0.00 0.00 3.13
266 267 7.065923 CGGGAAAATAAACACAAAAAGGGAAAA 59.934 33.333 0.00 0.00 0.00 2.29
267 268 8.740906 GGGAAAATAAACACAAAAAGGGAAAAA 58.259 29.630 0.00 0.00 0.00 1.94
270 271 9.579768 AAAATAAACACAAAAAGGGAAAAATGC 57.420 25.926 0.00 0.00 0.00 3.56
271 272 8.518430 AATAAACACAAAAAGGGAAAAATGCT 57.482 26.923 0.00 0.00 0.00 3.79
272 273 9.620259 AATAAACACAAAAAGGGAAAAATGCTA 57.380 25.926 0.00 0.00 0.00 3.49
273 274 7.929941 AAACACAAAAAGGGAAAAATGCTAA 57.070 28.000 0.00 0.00 0.00 3.09
274 275 7.929941 AACACAAAAAGGGAAAAATGCTAAA 57.070 28.000 0.00 0.00 0.00 1.85
275 276 7.929941 ACACAAAAAGGGAAAAATGCTAAAA 57.070 28.000 0.00 0.00 0.00 1.52
276 277 8.341892 ACACAAAAAGGGAAAAATGCTAAAAA 57.658 26.923 0.00 0.00 0.00 1.94
277 278 8.458052 ACACAAAAAGGGAAAAATGCTAAAAAG 58.542 29.630 0.00 0.00 0.00 2.27
278 279 7.914871 CACAAAAAGGGAAAAATGCTAAAAAGG 59.085 33.333 0.00 0.00 0.00 3.11
279 280 7.831690 ACAAAAAGGGAAAAATGCTAAAAAGGA 59.168 29.630 0.00 0.00 0.00 3.36
280 281 7.801716 AAAAGGGAAAAATGCTAAAAAGGAC 57.198 32.000 0.00 0.00 0.00 3.85
281 282 6.493189 AAGGGAAAAATGCTAAAAAGGACA 57.507 33.333 0.00 0.00 0.00 4.02
282 283 6.101650 AGGGAAAAATGCTAAAAAGGACAG 57.898 37.500 0.00 0.00 0.00 3.51
283 284 5.838521 AGGGAAAAATGCTAAAAAGGACAGA 59.161 36.000 0.00 0.00 0.00 3.41
284 285 6.326323 AGGGAAAAATGCTAAAAAGGACAGAA 59.674 34.615 0.00 0.00 0.00 3.02
285 286 6.646653 GGGAAAAATGCTAAAAAGGACAGAAG 59.353 38.462 0.00 0.00 0.00 2.85
286 287 6.646653 GGAAAAATGCTAAAAAGGACAGAAGG 59.353 38.462 0.00 0.00 0.00 3.46
287 288 4.790765 AATGCTAAAAAGGACAGAAGGC 57.209 40.909 0.00 0.00 0.00 4.35
288 289 3.222173 TGCTAAAAAGGACAGAAGGCA 57.778 42.857 0.00 0.00 0.00 4.75
289 290 3.766545 TGCTAAAAAGGACAGAAGGCAT 58.233 40.909 0.00 0.00 0.00 4.40
290 291 4.151883 TGCTAAAAAGGACAGAAGGCATT 58.848 39.130 0.00 0.00 0.00 3.56
291 292 4.218417 TGCTAAAAAGGACAGAAGGCATTC 59.782 41.667 2.10 2.10 35.52 2.67
292 293 4.380973 GCTAAAAAGGACAGAAGGCATTCC 60.381 45.833 7.63 0.00 35.94 3.01
331 332 2.902705 ACGAAAGTACAGAAGCACCA 57.097 45.000 0.00 0.00 46.88 4.17
332 333 3.188159 ACGAAAGTACAGAAGCACCAA 57.812 42.857 0.00 0.00 46.88 3.67
333 334 2.870411 ACGAAAGTACAGAAGCACCAAC 59.130 45.455 0.00 0.00 46.88 3.77
334 335 2.096909 CGAAAGTACAGAAGCACCAACG 60.097 50.000 0.00 0.00 0.00 4.10
335 336 2.902705 AAGTACAGAAGCACCAACGA 57.097 45.000 0.00 0.00 0.00 3.85
336 337 2.440539 AGTACAGAAGCACCAACGAG 57.559 50.000 0.00 0.00 0.00 4.18
337 338 0.790814 GTACAGAAGCACCAACGAGC 59.209 55.000 0.00 0.00 0.00 5.03
338 339 0.391228 TACAGAAGCACCAACGAGCA 59.609 50.000 0.00 0.00 0.00 4.26
339 340 0.463654 ACAGAAGCACCAACGAGCAA 60.464 50.000 0.00 0.00 0.00 3.91
340 341 0.236711 CAGAAGCACCAACGAGCAAG 59.763 55.000 0.00 0.00 0.00 4.01
341 342 0.179045 AGAAGCACCAACGAGCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
342 343 0.040958 GAAGCACCAACGAGCAAGTG 60.041 55.000 0.00 0.00 0.00 3.16
343 344 1.447317 AAGCACCAACGAGCAAGTGG 61.447 55.000 0.00 0.00 0.00 4.00
344 345 2.639286 CACCAACGAGCAAGTGGC 59.361 61.111 0.00 0.00 45.30 5.01
345 346 2.594592 ACCAACGAGCAAGTGGCC 60.595 61.111 0.00 0.00 46.50 5.36
346 347 2.281761 CCAACGAGCAAGTGGCCT 60.282 61.111 3.32 0.00 46.50 5.19
347 348 1.003839 CCAACGAGCAAGTGGCCTA 60.004 57.895 3.32 0.00 46.50 3.93
348 349 1.021390 CCAACGAGCAAGTGGCCTAG 61.021 60.000 3.32 0.00 46.50 3.02
349 350 0.320771 CAACGAGCAAGTGGCCTAGT 60.321 55.000 3.32 0.00 46.50 2.57
350 351 0.320771 AACGAGCAAGTGGCCTAGTG 60.321 55.000 3.32 0.00 46.50 2.74
351 352 1.448540 CGAGCAAGTGGCCTAGTGG 60.449 63.158 3.32 0.00 46.50 4.00
352 353 1.679898 GAGCAAGTGGCCTAGTGGT 59.320 57.895 3.32 4.22 46.50 4.16
353 354 0.036875 GAGCAAGTGGCCTAGTGGTT 59.963 55.000 3.32 0.00 46.50 3.67
354 355 1.278127 GAGCAAGTGGCCTAGTGGTTA 59.722 52.381 3.32 0.00 46.50 2.85
355 356 1.279271 AGCAAGTGGCCTAGTGGTTAG 59.721 52.381 3.32 0.00 46.50 2.34
356 357 1.278127 GCAAGTGGCCTAGTGGTTAGA 59.722 52.381 3.32 0.00 36.11 2.10
357 358 2.678190 GCAAGTGGCCTAGTGGTTAGAG 60.678 54.545 3.32 0.00 36.11 2.43
358 359 1.196012 AGTGGCCTAGTGGTTAGAGC 58.804 55.000 3.32 0.00 35.27 4.09
359 360 0.902531 GTGGCCTAGTGGTTAGAGCA 59.097 55.000 3.32 0.00 35.27 4.26
360 361 1.134670 GTGGCCTAGTGGTTAGAGCAG 60.135 57.143 3.32 0.00 35.27 4.24
361 362 1.273041 TGGCCTAGTGGTTAGAGCAGA 60.273 52.381 3.32 0.00 35.27 4.26
362 363 1.831736 GGCCTAGTGGTTAGAGCAGAA 59.168 52.381 0.00 0.00 35.27 3.02
363 364 2.436173 GGCCTAGTGGTTAGAGCAGAAT 59.564 50.000 0.00 0.00 35.27 2.40
364 365 3.493524 GGCCTAGTGGTTAGAGCAGAATC 60.494 52.174 0.00 0.00 35.27 2.52
365 366 3.493524 GCCTAGTGGTTAGAGCAGAATCC 60.494 52.174 0.00 0.00 35.27 3.01
366 367 3.706594 CCTAGTGGTTAGAGCAGAATCCA 59.293 47.826 0.00 0.00 0.00 3.41
367 368 4.346418 CCTAGTGGTTAGAGCAGAATCCAT 59.654 45.833 0.00 0.00 0.00 3.41
368 369 4.148128 AGTGGTTAGAGCAGAATCCATG 57.852 45.455 0.00 0.00 0.00 3.66
369 370 3.118112 AGTGGTTAGAGCAGAATCCATGG 60.118 47.826 4.97 4.97 0.00 3.66
370 371 3.114606 TGGTTAGAGCAGAATCCATGGA 58.885 45.455 18.88 18.88 0.00 3.41
371 372 3.135348 TGGTTAGAGCAGAATCCATGGAG 59.865 47.826 21.33 7.50 0.00 3.86
372 373 3.137533 GTTAGAGCAGAATCCATGGAGC 58.862 50.000 21.33 17.47 0.00 4.70
373 374 0.106335 AGAGCAGAATCCATGGAGCG 59.894 55.000 21.33 9.17 0.00 5.03
374 375 0.105593 GAGCAGAATCCATGGAGCGA 59.894 55.000 21.33 0.00 0.00 4.93
375 376 0.763652 AGCAGAATCCATGGAGCGAT 59.236 50.000 21.33 6.21 0.00 4.58
376 377 0.873054 GCAGAATCCATGGAGCGATG 59.127 55.000 21.33 16.03 0.00 3.84
377 378 1.541889 GCAGAATCCATGGAGCGATGA 60.542 52.381 21.33 0.00 0.00 2.92
378 379 2.414806 CAGAATCCATGGAGCGATGAG 58.585 52.381 21.33 2.43 0.00 2.90
379 380 2.036862 CAGAATCCATGGAGCGATGAGA 59.963 50.000 21.33 0.00 0.00 3.27
380 381 2.905085 AGAATCCATGGAGCGATGAGAT 59.095 45.455 21.33 0.00 0.00 2.75
381 382 3.055963 AGAATCCATGGAGCGATGAGATC 60.056 47.826 21.33 6.84 33.78 2.75
391 392 2.893870 CGATGAGATCGCGAGTTTTC 57.106 50.000 16.66 7.20 46.55 2.29
392 393 2.185262 CGATGAGATCGCGAGTTTTCA 58.815 47.619 16.66 15.14 46.55 2.69
393 394 2.598637 CGATGAGATCGCGAGTTTTCAA 59.401 45.455 16.66 0.00 46.55 2.69
394 395 3.243877 CGATGAGATCGCGAGTTTTCAAT 59.756 43.478 16.66 5.21 46.55 2.57
395 396 4.604916 CGATGAGATCGCGAGTTTTCAATC 60.605 45.833 16.66 12.71 46.55 2.67
396 397 2.930040 TGAGATCGCGAGTTTTCAATCC 59.070 45.455 16.66 0.00 0.00 3.01
397 398 3.190874 GAGATCGCGAGTTTTCAATCCT 58.809 45.455 16.66 0.00 0.00 3.24
398 399 3.600388 AGATCGCGAGTTTTCAATCCTT 58.400 40.909 16.66 0.00 0.00 3.36
399 400 3.619038 AGATCGCGAGTTTTCAATCCTTC 59.381 43.478 16.66 1.78 0.00 3.46
400 401 1.724623 TCGCGAGTTTTCAATCCTTCG 59.275 47.619 3.71 0.00 0.00 3.79
401 402 1.201921 CGCGAGTTTTCAATCCTTCGG 60.202 52.381 0.00 0.00 0.00 4.30
402 403 2.073816 GCGAGTTTTCAATCCTTCGGA 58.926 47.619 0.00 0.00 35.55 4.55
403 404 2.482721 GCGAGTTTTCAATCCTTCGGAA 59.517 45.455 0.00 0.00 34.34 4.30
404 405 3.058501 GCGAGTTTTCAATCCTTCGGAAA 60.059 43.478 0.00 0.00 34.34 3.13
405 406 4.555906 GCGAGTTTTCAATCCTTCGGAAAA 60.556 41.667 0.00 0.00 37.97 2.29
406 407 5.147162 CGAGTTTTCAATCCTTCGGAAAAG 58.853 41.667 0.00 0.00 40.13 2.27
407 408 5.453567 AGTTTTCAATCCTTCGGAAAAGG 57.546 39.130 0.00 0.00 40.13 3.11
408 409 4.280929 AGTTTTCAATCCTTCGGAAAAGGG 59.719 41.667 4.10 0.00 40.13 3.95
409 410 2.507407 TCAATCCTTCGGAAAAGGGG 57.493 50.000 4.10 0.00 37.99 4.79
410 411 1.989586 TCAATCCTTCGGAAAAGGGGA 59.010 47.619 4.10 0.00 37.99 4.81
411 412 2.026262 TCAATCCTTCGGAAAAGGGGAG 60.026 50.000 4.10 0.00 37.99 4.30
412 413 1.966845 ATCCTTCGGAAAAGGGGAGA 58.033 50.000 4.10 0.00 37.99 3.71
413 414 1.966845 TCCTTCGGAAAAGGGGAGAT 58.033 50.000 4.10 0.00 37.99 2.75
414 415 1.559682 TCCTTCGGAAAAGGGGAGATG 59.440 52.381 4.10 0.00 37.99 2.90
415 416 1.408822 CCTTCGGAAAAGGGGAGATGG 60.409 57.143 0.00 0.00 33.79 3.51
686 687 3.251332 TTGGAAATCGGGCGCTAAA 57.749 47.368 7.64 0.00 0.00 1.85
687 688 1.091537 TTGGAAATCGGGCGCTAAAG 58.908 50.000 7.64 0.00 0.00 1.85
688 689 0.250793 TGGAAATCGGGCGCTAAAGA 59.749 50.000 7.64 1.92 0.00 2.52
689 690 0.656259 GGAAATCGGGCGCTAAAGAC 59.344 55.000 7.64 0.00 0.00 3.01
690 691 1.365699 GAAATCGGGCGCTAAAGACA 58.634 50.000 7.64 0.00 0.00 3.41
691 692 1.062148 GAAATCGGGCGCTAAAGACAC 59.938 52.381 7.64 0.00 0.00 3.67
692 693 0.743345 AATCGGGCGCTAAAGACACC 60.743 55.000 7.64 0.00 0.00 4.16
693 694 1.895020 ATCGGGCGCTAAAGACACCA 61.895 55.000 7.64 0.00 0.00 4.17
694 695 1.669760 CGGGCGCTAAAGACACCAA 60.670 57.895 7.64 0.00 0.00 3.67
695 696 1.231958 CGGGCGCTAAAGACACCAAA 61.232 55.000 7.64 0.00 0.00 3.28
696 697 1.173913 GGGCGCTAAAGACACCAAAT 58.826 50.000 7.64 0.00 0.00 2.32
697 698 2.361789 GGGCGCTAAAGACACCAAATA 58.638 47.619 7.64 0.00 0.00 1.40
698 699 2.354821 GGGCGCTAAAGACACCAAATAG 59.645 50.000 7.64 0.00 0.00 1.73
699 700 2.354821 GGCGCTAAAGACACCAAATAGG 59.645 50.000 7.64 0.00 45.67 2.57
700 701 3.267483 GCGCTAAAGACACCAAATAGGA 58.733 45.455 0.00 0.00 41.22 2.94
701 702 3.877508 GCGCTAAAGACACCAAATAGGAT 59.122 43.478 0.00 0.00 41.22 3.24
702 703 4.024809 GCGCTAAAGACACCAAATAGGATC 60.025 45.833 0.00 0.00 41.22 3.36
703 704 5.360591 CGCTAAAGACACCAAATAGGATCT 58.639 41.667 0.00 0.00 41.22 2.75
704 705 5.235186 CGCTAAAGACACCAAATAGGATCTG 59.765 44.000 0.00 0.00 41.22 2.90
705 706 5.529060 GCTAAAGACACCAAATAGGATCTGG 59.471 44.000 0.00 0.00 41.22 3.86
706 707 3.567478 AGACACCAAATAGGATCTGGC 57.433 47.619 0.00 0.00 41.22 4.85
707 708 3.118531 AGACACCAAATAGGATCTGGCT 58.881 45.455 0.00 0.00 41.22 4.75
708 709 4.298626 AGACACCAAATAGGATCTGGCTA 58.701 43.478 0.00 0.00 41.22 3.93
709 710 4.910304 AGACACCAAATAGGATCTGGCTAT 59.090 41.667 0.00 0.00 41.22 2.97
710 711 5.012561 AGACACCAAATAGGATCTGGCTATC 59.987 44.000 0.00 0.00 41.22 2.08
711 712 4.910304 ACACCAAATAGGATCTGGCTATCT 59.090 41.667 0.00 0.00 41.22 1.98
712 713 5.012561 ACACCAAATAGGATCTGGCTATCTC 59.987 44.000 0.00 0.00 41.22 2.75
713 714 4.534103 ACCAAATAGGATCTGGCTATCTCC 59.466 45.833 0.00 0.00 41.22 3.71
714 715 4.382470 CCAAATAGGATCTGGCTATCTCCG 60.382 50.000 0.00 0.00 41.22 4.63
715 716 2.516227 TAGGATCTGGCTATCTCCGG 57.484 55.000 0.00 0.00 32.87 5.14
716 717 0.780637 AGGATCTGGCTATCTCCGGA 59.219 55.000 2.93 2.93 44.96 5.14
717 718 0.892063 GGATCTGGCTATCTCCGGAC 59.108 60.000 0.00 0.00 43.77 4.79
718 719 0.523966 GATCTGGCTATCTCCGGACG 59.476 60.000 0.00 0.00 43.77 4.79
719 720 0.178987 ATCTGGCTATCTCCGGACGT 60.179 55.000 0.00 0.00 43.77 4.34
720 721 0.395311 TCTGGCTATCTCCGGACGTT 60.395 55.000 0.00 0.00 36.62 3.99
721 722 0.460311 CTGGCTATCTCCGGACGTTT 59.540 55.000 0.00 0.00 34.34 3.60
722 723 0.899720 TGGCTATCTCCGGACGTTTT 59.100 50.000 0.00 0.00 0.00 2.43
723 724 1.287425 GGCTATCTCCGGACGTTTTG 58.713 55.000 0.00 0.00 0.00 2.44
724 725 1.134907 GGCTATCTCCGGACGTTTTGA 60.135 52.381 0.00 0.00 0.00 2.69
725 726 2.483188 GGCTATCTCCGGACGTTTTGAT 60.483 50.000 0.00 3.10 0.00 2.57
750 751 1.070577 CGGTCTCAAGACGTTTGCAAG 60.071 52.381 0.00 0.00 45.65 4.01
768 777 2.283145 AGCTCTTTTGGTGATGTGCT 57.717 45.000 0.00 0.00 0.00 4.40
769 778 3.423539 AGCTCTTTTGGTGATGTGCTA 57.576 42.857 0.00 0.00 0.00 3.49
773 782 1.468520 CTTTTGGTGATGTGCTACGGG 59.531 52.381 0.00 0.00 0.00 5.28
793 803 4.439253 GGGATGCCCAAGAGTATTTACT 57.561 45.455 0.00 0.00 44.65 2.24
832 843 0.252513 TGCTGAGCAGGGTAGGGTAA 60.253 55.000 1.40 0.00 33.32 2.85
839 850 3.327439 AGCAGGGTAGGGTAAAGCATAT 58.673 45.455 0.00 0.00 0.00 1.78
842 853 4.278419 GCAGGGTAGGGTAAAGCATATTTG 59.722 45.833 0.00 0.00 0.00 2.32
917 928 5.760484 AGCCAATTAACCCAATCAATTGT 57.240 34.783 5.13 0.00 37.76 2.71
943 954 8.783093 TGATCCACTATTTATTTATTCGCCTTG 58.217 33.333 0.00 0.00 0.00 3.61
1044 1060 1.850755 TCCCCTCCCCAAACCAGAC 60.851 63.158 0.00 0.00 0.00 3.51
1053 1069 1.691196 CCAAACCAGACCAAGCAAGA 58.309 50.000 0.00 0.00 0.00 3.02
1121 1137 2.427905 CGCGTGGTTCGACGAGAA 60.428 61.111 11.11 0.00 41.08 2.87
1152 1168 1.142748 GCAGGTCTCCATCCACTCG 59.857 63.158 0.00 0.00 0.00 4.18
1153 1169 1.608717 GCAGGTCTCCATCCACTCGT 61.609 60.000 0.00 0.00 0.00 4.18
1191 1207 3.155167 ATCCTCTTCGGCGTCCCC 61.155 66.667 6.85 0.00 0.00 4.81
1237 1253 5.726793 AGGTATCTTCCTTCACCAGTACAAT 59.273 40.000 0.00 0.00 33.52 2.71
1277 1294 2.452006 ACGAAGTGAGCGTTTGTTTG 57.548 45.000 0.00 0.00 42.51 2.93
1289 1306 4.578928 AGCGTTTGTTTGACCTCTTGTAAT 59.421 37.500 0.00 0.00 0.00 1.89
1300 1317 6.068670 TGACCTCTTGTAATCGATGGATAGA 58.931 40.000 0.00 0.00 31.01 1.98
1303 1320 6.207810 ACCTCTTGTAATCGATGGATAGAGAC 59.792 42.308 20.62 2.41 35.22 3.36
1341 1358 6.141560 GGATGGATCCAAGATTGACTTTTC 57.858 41.667 20.67 6.78 46.38 2.29
1369 1387 2.936498 GCTTATAGCTTCTGCGAAACCA 59.064 45.455 0.00 0.00 45.42 3.67
1371 1389 2.029838 ATAGCTTCTGCGAAACCAGG 57.970 50.000 0.00 0.00 45.42 4.45
1501 1521 7.819644 TCCTTGTCAAATTTCACATGTAGATG 58.180 34.615 0.00 0.00 35.49 2.90
1542 1562 4.172505 CGCATCTAGCTAAGCTTCCATAG 58.827 47.826 0.00 3.82 40.44 2.23
1628 1648 7.716123 GCTTGGTCTAGTACTCTAGTAGATTGA 59.284 40.741 0.00 0.00 41.38 2.57
1709 1729 2.500098 TCACTAATCACTACCCTGTGGC 59.500 50.000 0.00 0.00 38.40 5.01
1761 1783 2.189191 ATCTGCTCCTGCCGCAAGAA 62.189 55.000 0.00 0.00 36.88 2.52
1771 1793 3.514645 CTGCCGCAAGAATATTTTGCTT 58.485 40.909 21.90 7.56 46.62 3.91
1811 1833 2.162681 CGGGATTCTGTTGCTCCTTTT 58.837 47.619 0.00 0.00 0.00 2.27
1824 1846 6.127196 TGTTGCTCCTTTTATCCTGTTTTGTT 60.127 34.615 0.00 0.00 0.00 2.83
1826 1848 5.596361 TGCTCCTTTTATCCTGTTTTGTTGA 59.404 36.000 0.00 0.00 0.00 3.18
1827 1849 5.920840 GCTCCTTTTATCCTGTTTTGTTGAC 59.079 40.000 0.00 0.00 0.00 3.18
1828 1850 6.239036 GCTCCTTTTATCCTGTTTTGTTGACT 60.239 38.462 0.00 0.00 0.00 3.41
1829 1851 7.654022 TCCTTTTATCCTGTTTTGTTGACTT 57.346 32.000 0.00 0.00 0.00 3.01
1830 1852 8.073467 TCCTTTTATCCTGTTTTGTTGACTTT 57.927 30.769 0.00 0.00 0.00 2.66
1831 1853 9.191479 TCCTTTTATCCTGTTTTGTTGACTTTA 57.809 29.630 0.00 0.00 0.00 1.85
1832 1854 9.244799 CCTTTTATCCTGTTTTGTTGACTTTAC 57.755 33.333 0.00 0.00 0.00 2.01
1838 1860 8.751302 TCCTGTTTTGTTGACTTTACTTTTTC 57.249 30.769 0.00 0.00 0.00 2.29
1839 1861 8.361139 TCCTGTTTTGTTGACTTTACTTTTTCA 58.639 29.630 0.00 0.00 0.00 2.69
1840 1862 9.150348 CCTGTTTTGTTGACTTTACTTTTTCAT 57.850 29.630 0.00 0.00 0.00 2.57
1874 1896 9.626045 AAAGAAAAACGTAAATGAATGAGATCC 57.374 29.630 0.00 0.00 0.00 3.36
1875 1897 7.464358 AGAAAAACGTAAATGAATGAGATCCG 58.536 34.615 0.00 0.00 0.00 4.18
1876 1898 5.734855 AAACGTAAATGAATGAGATCCGG 57.265 39.130 0.00 0.00 0.00 5.14
1877 1899 4.665833 ACGTAAATGAATGAGATCCGGA 57.334 40.909 6.61 6.61 0.00 5.14
1878 1900 4.369182 ACGTAAATGAATGAGATCCGGAC 58.631 43.478 6.12 0.11 0.00 4.79
1879 1901 3.425525 CGTAAATGAATGAGATCCGGACG 59.574 47.826 6.12 0.00 0.00 4.79
1880 1902 3.543680 AAATGAATGAGATCCGGACGT 57.456 42.857 6.12 0.00 0.00 4.34
1881 1903 2.802787 ATGAATGAGATCCGGACGTC 57.197 50.000 6.12 7.13 0.00 4.34
1882 1904 0.744874 TGAATGAGATCCGGACGTCC 59.255 55.000 25.28 25.28 0.00 4.79
1971 1994 2.481104 GCAAGTTTAGTTGGCAAGCACA 60.481 45.455 0.00 0.00 0.00 4.57
1986 2010 1.413445 AGCACAGCAATTTCTGGCAAA 59.587 42.857 16.32 0.00 38.36 3.68
2008 2032 3.915437 AACAAACTACAGGCGGATTTG 57.085 42.857 10.30 10.30 36.54 2.32
2112 2180 8.815565 ACTGTGTCTTCTCTCTTCTATGAATA 57.184 34.615 0.00 0.00 0.00 1.75
2270 2343 4.046938 TGCTGTAATTTTTGCCGACAAA 57.953 36.364 0.00 0.00 43.97 2.83
2274 2347 5.061684 GCTGTAATTTTTGCCGACAAATACC 59.938 40.000 0.00 0.00 44.96 2.73
2365 2441 7.182749 TCCGTATAATAGTAAGGTAGCTCCCTA 59.817 40.741 0.00 0.00 36.75 3.53
2370 2446 6.776887 ATAGTAAGGTAGCTCCCTAGTACA 57.223 41.667 0.00 0.00 36.75 2.90
2410 2792 3.889196 TTTAGTGAATGTGTGAACGCC 57.111 42.857 0.00 0.00 0.00 5.68
2414 2796 1.003331 GTGAATGTGTGAACGCCGAAA 60.003 47.619 0.00 0.00 0.00 3.46
2468 2850 6.387041 TGACCTTAGTATACGAATGGACAG 57.613 41.667 15.75 0.00 0.00 3.51
2469 2851 5.889853 TGACCTTAGTATACGAATGGACAGT 59.110 40.000 15.75 3.04 0.00 3.55
2470 2852 6.379133 TGACCTTAGTATACGAATGGACAGTT 59.621 38.462 15.75 0.62 0.00 3.16
2471 2853 6.570692 ACCTTAGTATACGAATGGACAGTTG 58.429 40.000 15.75 0.00 0.00 3.16
2472 2854 5.983720 CCTTAGTATACGAATGGACAGTTGG 59.016 44.000 0.00 0.00 0.00 3.77
2473 2855 6.183360 CCTTAGTATACGAATGGACAGTTGGA 60.183 42.308 0.00 0.00 0.00 3.53
2474 2856 5.007385 AGTATACGAATGGACAGTTGGAC 57.993 43.478 0.00 0.00 0.00 4.02
2475 2857 3.973206 ATACGAATGGACAGTTGGACA 57.027 42.857 0.00 0.00 0.00 4.02
2482 2864 4.640771 ATGGACAGTTGGACACACTATT 57.359 40.909 0.00 0.00 0.00 1.73
2489 2871 2.654749 TGGACACACTATTCTCAGCG 57.345 50.000 0.00 0.00 0.00 5.18
2491 2873 2.299013 TGGACACACTATTCTCAGCGTT 59.701 45.455 0.00 0.00 0.00 4.84
2525 2907 6.942532 TTAAAGCAGCTAGGTCCATAATTG 57.057 37.500 0.00 0.00 0.00 2.32
2815 3197 1.139853 GATCCTCAAGGCACTGTAGGG 59.860 57.143 0.00 0.00 40.43 3.53
2957 3339 0.179070 TGTGCGGTGCAAGTGACTTA 60.179 50.000 0.00 0.00 41.47 2.24
3107 3491 7.681679 TGGTGATTGTCTTAACTGGTATGTTA 58.318 34.615 0.00 0.00 0.00 2.41
3108 3492 8.325787 TGGTGATTGTCTTAACTGGTATGTTAT 58.674 33.333 0.00 0.00 33.16 1.89
3224 3608 6.701400 TCATACATATCAAGTGACATTGACGG 59.299 38.462 0.00 0.00 41.76 4.79
3263 3647 1.967066 CTCACACACACTCTCTCCCTT 59.033 52.381 0.00 0.00 0.00 3.95
3303 3691 0.933700 CCCCTCTCCCTCTCTCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
3304 3692 1.290732 CCCCTCTCCCTCTCTCTCTTT 59.709 57.143 0.00 0.00 0.00 2.52
3395 3787 3.428534 CGCGCTAGTGCATAACAATATGA 59.571 43.478 26.75 0.00 41.25 2.15
3675 4067 5.198207 CCATTTACCTTGGTACTTTAGGGG 58.802 45.833 0.00 0.00 33.22 4.79
3724 4116 2.262471 CTTGCCTGCGAATCCACAGC 62.262 60.000 0.00 0.00 32.37 4.40
3725 4117 3.869272 GCCTGCGAATCCACAGCG 61.869 66.667 0.00 0.00 32.37 5.18
3762 4154 2.283834 ACCCATTCCCATCACCAACTA 58.716 47.619 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.866010 ACCTTTTCCAAATTTGCTGAATTC 57.134 33.333 12.92 0.00 36.96 2.17
1 2 8.744568 TTAACCTTTTCCAAATTTGCTGAATT 57.255 26.923 12.92 6.00 39.63 2.17
2 3 8.922931 ATTAACCTTTTCCAAATTTGCTGAAT 57.077 26.923 12.92 0.25 0.00 2.57
3 4 7.170658 CGATTAACCTTTTCCAAATTTGCTGAA 59.829 33.333 12.92 8.95 0.00 3.02
4 5 6.644592 CGATTAACCTTTTCCAAATTTGCTGA 59.355 34.615 12.92 2.91 0.00 4.26
5 6 6.644592 TCGATTAACCTTTTCCAAATTTGCTG 59.355 34.615 12.92 0.35 0.00 4.41
6 7 6.754193 TCGATTAACCTTTTCCAAATTTGCT 58.246 32.000 12.92 0.00 0.00 3.91
7 8 7.414814 TTCGATTAACCTTTTCCAAATTTGC 57.585 32.000 12.92 0.00 0.00 3.68
49 50 9.965824 ACACGATGAACTTTTTCTTTTCATATT 57.034 25.926 0.00 0.00 39.53 1.28
50 51 9.965824 AACACGATGAACTTTTTCTTTTCATAT 57.034 25.926 0.00 0.00 39.53 1.78
51 52 9.796120 AAACACGATGAACTTTTTCTTTTCATA 57.204 25.926 0.00 0.00 39.53 2.15
52 53 8.594687 CAAACACGATGAACTTTTTCTTTTCAT 58.405 29.630 0.00 0.00 41.60 2.57
53 54 7.810282 TCAAACACGATGAACTTTTTCTTTTCA 59.190 29.630 0.00 0.00 33.89 2.69
54 55 8.168681 TCAAACACGATGAACTTTTTCTTTTC 57.831 30.769 0.00 0.00 32.36 2.29
55 56 8.527567 TTCAAACACGATGAACTTTTTCTTTT 57.472 26.923 0.00 0.00 32.10 2.27
56 57 8.527567 TTTCAAACACGATGAACTTTTTCTTT 57.472 26.923 0.00 0.00 36.57 2.52
57 58 8.527567 TTTTCAAACACGATGAACTTTTTCTT 57.472 26.923 0.00 0.00 36.57 2.52
58 59 8.527567 TTTTTCAAACACGATGAACTTTTTCT 57.472 26.923 0.00 0.00 36.57 2.52
146 147 9.965824 GAACTCCTTTTCAATTTTGATGAACTA 57.034 29.630 0.00 0.00 36.57 2.24
147 148 8.477256 TGAACTCCTTTTCAATTTTGATGAACT 58.523 29.630 0.00 0.00 36.57 3.01
148 149 8.647143 TGAACTCCTTTTCAATTTTGATGAAC 57.353 30.769 0.00 0.00 36.57 3.18
149 150 8.477256 ACTGAACTCCTTTTCAATTTTGATGAA 58.523 29.630 0.00 0.00 37.00 2.57
150 151 7.922278 CACTGAACTCCTTTTCAATTTTGATGA 59.078 33.333 0.00 0.00 37.00 2.92
151 152 7.922278 TCACTGAACTCCTTTTCAATTTTGATG 59.078 33.333 0.00 0.00 37.00 3.07
152 153 8.010733 TCACTGAACTCCTTTTCAATTTTGAT 57.989 30.769 0.00 0.00 37.00 2.57
153 154 7.403312 TCACTGAACTCCTTTTCAATTTTGA 57.597 32.000 0.00 0.00 35.07 2.69
154 155 8.652810 ATTCACTGAACTCCTTTTCAATTTTG 57.347 30.769 0.00 0.00 35.07 2.44
155 156 9.101655 CAATTCACTGAACTCCTTTTCAATTTT 57.898 29.630 0.00 0.00 35.07 1.82
156 157 7.712205 CCAATTCACTGAACTCCTTTTCAATTT 59.288 33.333 0.00 0.00 35.07 1.82
157 158 7.069826 TCCAATTCACTGAACTCCTTTTCAATT 59.930 33.333 0.00 0.00 35.07 2.32
158 159 6.550854 TCCAATTCACTGAACTCCTTTTCAAT 59.449 34.615 0.00 0.00 35.07 2.57
159 160 5.890985 TCCAATTCACTGAACTCCTTTTCAA 59.109 36.000 0.00 0.00 35.07 2.69
160 161 5.445069 TCCAATTCACTGAACTCCTTTTCA 58.555 37.500 0.00 0.00 34.30 2.69
161 162 6.391227 TTCCAATTCACTGAACTCCTTTTC 57.609 37.500 0.00 0.00 0.00 2.29
162 163 6.790232 TTTCCAATTCACTGAACTCCTTTT 57.210 33.333 0.00 0.00 0.00 2.27
163 164 6.790232 TTTTCCAATTCACTGAACTCCTTT 57.210 33.333 0.00 0.00 0.00 3.11
164 165 6.790232 TTTTTCCAATTCACTGAACTCCTT 57.210 33.333 0.00 0.00 0.00 3.36
189 190 9.931710 CGATGGTTATTTTTAAAATTGACGAAC 57.068 29.630 8.28 6.39 0.00 3.95
190 191 9.894783 TCGATGGTTATTTTTAAAATTGACGAA 57.105 25.926 8.28 0.00 0.00 3.85
201 202 9.834628 GTGAACTCAAATCGATGGTTATTTTTA 57.165 29.630 0.00 0.00 0.00 1.52
202 203 7.537306 CGTGAACTCAAATCGATGGTTATTTTT 59.463 33.333 0.00 0.00 0.00 1.94
203 204 7.021196 CGTGAACTCAAATCGATGGTTATTTT 58.979 34.615 0.00 0.00 0.00 1.82
204 205 6.542852 CGTGAACTCAAATCGATGGTTATTT 58.457 36.000 0.00 0.00 0.00 1.40
205 206 5.447279 GCGTGAACTCAAATCGATGGTTATT 60.447 40.000 0.00 0.00 0.00 1.40
206 207 4.034048 GCGTGAACTCAAATCGATGGTTAT 59.966 41.667 0.00 0.00 0.00 1.89
207 208 3.369756 GCGTGAACTCAAATCGATGGTTA 59.630 43.478 0.00 0.00 0.00 2.85
208 209 2.159627 GCGTGAACTCAAATCGATGGTT 59.840 45.455 0.00 2.39 0.00 3.67
209 210 1.732259 GCGTGAACTCAAATCGATGGT 59.268 47.619 0.00 0.00 0.00 3.55
210 211 1.731709 TGCGTGAACTCAAATCGATGG 59.268 47.619 0.00 0.00 0.00 3.51
211 212 3.663464 ATGCGTGAACTCAAATCGATG 57.337 42.857 0.00 0.00 0.00 3.84
212 213 5.794687 TTAATGCGTGAACTCAAATCGAT 57.205 34.783 0.00 0.00 0.00 3.59
213 214 5.407084 TCTTTAATGCGTGAACTCAAATCGA 59.593 36.000 0.00 0.00 0.00 3.59
214 215 5.617609 TCTTTAATGCGTGAACTCAAATCG 58.382 37.500 0.00 0.00 0.00 3.34
215 216 7.408290 CGTTTCTTTAATGCGTGAACTCAAATC 60.408 37.037 0.00 0.00 0.00 2.17
216 217 6.359617 CGTTTCTTTAATGCGTGAACTCAAAT 59.640 34.615 0.00 0.00 0.00 2.32
217 218 5.679355 CGTTTCTTTAATGCGTGAACTCAAA 59.321 36.000 0.00 0.00 0.00 2.69
218 219 5.201910 CGTTTCTTTAATGCGTGAACTCAA 58.798 37.500 0.00 0.00 0.00 3.02
219 220 4.319190 CCGTTTCTTTAATGCGTGAACTCA 60.319 41.667 0.00 0.00 0.00 3.41
220 221 4.148891 CCGTTTCTTTAATGCGTGAACTC 58.851 43.478 0.00 0.00 0.00 3.01
221 222 3.058501 CCCGTTTCTTTAATGCGTGAACT 60.059 43.478 0.00 0.00 0.00 3.01
222 223 3.058777 TCCCGTTTCTTTAATGCGTGAAC 60.059 43.478 0.00 0.00 0.00 3.18
223 224 3.139850 TCCCGTTTCTTTAATGCGTGAA 58.860 40.909 0.00 0.00 0.00 3.18
224 225 2.768698 TCCCGTTTCTTTAATGCGTGA 58.231 42.857 0.00 0.00 0.00 4.35
225 226 3.546002 TTCCCGTTTCTTTAATGCGTG 57.454 42.857 0.00 0.00 0.00 5.34
226 227 4.571372 TTTTCCCGTTTCTTTAATGCGT 57.429 36.364 0.00 0.00 0.00 5.24
227 228 7.115095 TGTTTATTTTCCCGTTTCTTTAATGCG 59.885 33.333 0.00 0.00 0.00 4.73
228 229 8.218441 GTGTTTATTTTCCCGTTTCTTTAATGC 58.782 33.333 0.00 0.00 0.00 3.56
229 230 9.250624 TGTGTTTATTTTCCCGTTTCTTTAATG 57.749 29.630 0.00 0.00 0.00 1.90
230 231 9.819267 TTGTGTTTATTTTCCCGTTTCTTTAAT 57.181 25.926 0.00 0.00 0.00 1.40
231 232 9.649167 TTTGTGTTTATTTTCCCGTTTCTTTAA 57.351 25.926 0.00 0.00 0.00 1.52
232 233 9.649167 TTTTGTGTTTATTTTCCCGTTTCTTTA 57.351 25.926 0.00 0.00 0.00 1.85
233 234 8.549338 TTTTGTGTTTATTTTCCCGTTTCTTT 57.451 26.923 0.00 0.00 0.00 2.52
234 235 8.549338 TTTTTGTGTTTATTTTCCCGTTTCTT 57.451 26.923 0.00 0.00 0.00 2.52
235 236 7.279090 CCTTTTTGTGTTTATTTTCCCGTTTCT 59.721 33.333 0.00 0.00 0.00 2.52
236 237 7.403421 CCTTTTTGTGTTTATTTTCCCGTTTC 58.597 34.615 0.00 0.00 0.00 2.78
237 238 6.316640 CCCTTTTTGTGTTTATTTTCCCGTTT 59.683 34.615 0.00 0.00 0.00 3.60
238 239 5.818336 CCCTTTTTGTGTTTATTTTCCCGTT 59.182 36.000 0.00 0.00 0.00 4.44
239 240 5.128991 TCCCTTTTTGTGTTTATTTTCCCGT 59.871 36.000 0.00 0.00 0.00 5.28
240 241 5.602628 TCCCTTTTTGTGTTTATTTTCCCG 58.397 37.500 0.00 0.00 0.00 5.14
241 242 7.867305 TTTCCCTTTTTGTGTTTATTTTCCC 57.133 32.000 0.00 0.00 0.00 3.97
244 245 9.579768 GCATTTTTCCCTTTTTGTGTTTATTTT 57.420 25.926 0.00 0.00 0.00 1.82
245 246 8.965819 AGCATTTTTCCCTTTTTGTGTTTATTT 58.034 25.926 0.00 0.00 0.00 1.40
246 247 8.518430 AGCATTTTTCCCTTTTTGTGTTTATT 57.482 26.923 0.00 0.00 0.00 1.40
247 248 9.620259 TTAGCATTTTTCCCTTTTTGTGTTTAT 57.380 25.926 0.00 0.00 0.00 1.40
248 249 9.449719 TTTAGCATTTTTCCCTTTTTGTGTTTA 57.550 25.926 0.00 0.00 0.00 2.01
249 250 7.929941 TTAGCATTTTTCCCTTTTTGTGTTT 57.070 28.000 0.00 0.00 0.00 2.83
250 251 7.929941 TTTAGCATTTTTCCCTTTTTGTGTT 57.070 28.000 0.00 0.00 0.00 3.32
251 252 7.929941 TTTTAGCATTTTTCCCTTTTTGTGT 57.070 28.000 0.00 0.00 0.00 3.72
252 253 7.914871 CCTTTTTAGCATTTTTCCCTTTTTGTG 59.085 33.333 0.00 0.00 0.00 3.33
253 254 7.831690 TCCTTTTTAGCATTTTTCCCTTTTTGT 59.168 29.630 0.00 0.00 0.00 2.83
254 255 8.128582 GTCCTTTTTAGCATTTTTCCCTTTTTG 58.871 33.333 0.00 0.00 0.00 2.44
255 256 7.831690 TGTCCTTTTTAGCATTTTTCCCTTTTT 59.168 29.630 0.00 0.00 0.00 1.94
256 257 7.342581 TGTCCTTTTTAGCATTTTTCCCTTTT 58.657 30.769 0.00 0.00 0.00 2.27
257 258 6.894682 TGTCCTTTTTAGCATTTTTCCCTTT 58.105 32.000 0.00 0.00 0.00 3.11
258 259 6.326323 TCTGTCCTTTTTAGCATTTTTCCCTT 59.674 34.615 0.00 0.00 0.00 3.95
259 260 5.838521 TCTGTCCTTTTTAGCATTTTTCCCT 59.161 36.000 0.00 0.00 0.00 4.20
260 261 6.096673 TCTGTCCTTTTTAGCATTTTTCCC 57.903 37.500 0.00 0.00 0.00 3.97
261 262 6.646653 CCTTCTGTCCTTTTTAGCATTTTTCC 59.353 38.462 0.00 0.00 0.00 3.13
262 263 6.146184 GCCTTCTGTCCTTTTTAGCATTTTTC 59.854 38.462 0.00 0.00 0.00 2.29
263 264 5.991606 GCCTTCTGTCCTTTTTAGCATTTTT 59.008 36.000 0.00 0.00 0.00 1.94
264 265 5.070313 TGCCTTCTGTCCTTTTTAGCATTTT 59.930 36.000 0.00 0.00 0.00 1.82
265 266 4.588528 TGCCTTCTGTCCTTTTTAGCATTT 59.411 37.500 0.00 0.00 0.00 2.32
266 267 4.151883 TGCCTTCTGTCCTTTTTAGCATT 58.848 39.130 0.00 0.00 0.00 3.56
267 268 3.766545 TGCCTTCTGTCCTTTTTAGCAT 58.233 40.909 0.00 0.00 0.00 3.79
268 269 3.222173 TGCCTTCTGTCCTTTTTAGCA 57.778 42.857 0.00 0.00 0.00 3.49
269 270 4.380973 GGAATGCCTTCTGTCCTTTTTAGC 60.381 45.833 1.62 0.00 0.00 3.09
270 271 5.012893 AGGAATGCCTTCTGTCCTTTTTAG 58.987 41.667 1.62 0.00 43.90 1.85
271 272 4.998051 AGGAATGCCTTCTGTCCTTTTTA 58.002 39.130 1.62 0.00 43.90 1.52
272 273 3.849527 AGGAATGCCTTCTGTCCTTTTT 58.150 40.909 1.62 0.00 43.90 1.94
273 274 3.532641 AGGAATGCCTTCTGTCCTTTT 57.467 42.857 1.62 0.00 43.90 2.27
297 298 9.367444 CTGTACTTTCGTTCCTTATTTCTATGT 57.633 33.333 0.00 0.00 0.00 2.29
298 299 9.582431 TCTGTACTTTCGTTCCTTATTTCTATG 57.418 33.333 0.00 0.00 0.00 2.23
300 301 9.635520 CTTCTGTACTTTCGTTCCTTATTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
301 302 7.117956 GCTTCTGTACTTTCGTTCCTTATTTCT 59.882 37.037 0.00 0.00 0.00 2.52
302 303 7.095355 TGCTTCTGTACTTTCGTTCCTTATTTC 60.095 37.037 0.00 0.00 0.00 2.17
303 304 6.708949 TGCTTCTGTACTTTCGTTCCTTATTT 59.291 34.615 0.00 0.00 0.00 1.40
304 305 6.147328 GTGCTTCTGTACTTTCGTTCCTTATT 59.853 38.462 0.00 0.00 0.00 1.40
305 306 5.638234 GTGCTTCTGTACTTTCGTTCCTTAT 59.362 40.000 0.00 0.00 0.00 1.73
306 307 4.986659 GTGCTTCTGTACTTTCGTTCCTTA 59.013 41.667 0.00 0.00 0.00 2.69
307 308 3.808174 GTGCTTCTGTACTTTCGTTCCTT 59.192 43.478 0.00 0.00 0.00 3.36
308 309 3.391049 GTGCTTCTGTACTTTCGTTCCT 58.609 45.455 0.00 0.00 0.00 3.36
309 310 2.479275 GGTGCTTCTGTACTTTCGTTCC 59.521 50.000 0.00 0.00 0.00 3.62
310 311 3.128349 TGGTGCTTCTGTACTTTCGTTC 58.872 45.455 0.00 0.00 0.00 3.95
311 312 3.188159 TGGTGCTTCTGTACTTTCGTT 57.812 42.857 0.00 0.00 0.00 3.85
312 313 2.870411 GTTGGTGCTTCTGTACTTTCGT 59.130 45.455 0.00 0.00 0.00 3.85
313 314 2.096909 CGTTGGTGCTTCTGTACTTTCG 60.097 50.000 0.00 0.00 0.00 3.46
314 315 3.128349 TCGTTGGTGCTTCTGTACTTTC 58.872 45.455 0.00 0.00 0.00 2.62
315 316 3.131396 CTCGTTGGTGCTTCTGTACTTT 58.869 45.455 0.00 0.00 0.00 2.66
316 317 2.755650 CTCGTTGGTGCTTCTGTACTT 58.244 47.619 0.00 0.00 0.00 2.24
317 318 1.605712 GCTCGTTGGTGCTTCTGTACT 60.606 52.381 0.00 0.00 0.00 2.73
318 319 0.790814 GCTCGTTGGTGCTTCTGTAC 59.209 55.000 0.00 0.00 0.00 2.90
319 320 0.391228 TGCTCGTTGGTGCTTCTGTA 59.609 50.000 0.00 0.00 33.89 2.74
320 321 0.463654 TTGCTCGTTGGTGCTTCTGT 60.464 50.000 0.00 0.00 33.89 3.41
321 322 0.236711 CTTGCTCGTTGGTGCTTCTG 59.763 55.000 0.00 0.00 33.89 3.02
322 323 0.179045 ACTTGCTCGTTGGTGCTTCT 60.179 50.000 0.00 0.00 33.89 2.85
323 324 0.040958 CACTTGCTCGTTGGTGCTTC 60.041 55.000 0.00 0.00 33.89 3.86
324 325 1.447317 CCACTTGCTCGTTGGTGCTT 61.447 55.000 0.00 0.00 33.89 3.91
325 326 1.893808 CCACTTGCTCGTTGGTGCT 60.894 57.895 0.00 0.00 33.89 4.40
326 327 2.639286 CCACTTGCTCGTTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
327 328 2.639286 GCCACTTGCTCGTTGGTG 59.361 61.111 0.00 0.00 36.87 4.17
328 329 1.764571 TAGGCCACTTGCTCGTTGGT 61.765 55.000 5.01 0.00 40.92 3.67
329 330 1.003839 TAGGCCACTTGCTCGTTGG 60.004 57.895 5.01 0.00 40.92 3.77
330 331 0.320771 ACTAGGCCACTTGCTCGTTG 60.321 55.000 5.01 0.00 40.92 4.10
331 332 0.320771 CACTAGGCCACTTGCTCGTT 60.321 55.000 5.01 0.00 40.92 3.85
332 333 1.293498 CACTAGGCCACTTGCTCGT 59.707 57.895 5.01 0.00 40.92 4.18
333 334 1.448540 CCACTAGGCCACTTGCTCG 60.449 63.158 5.01 0.00 40.92 5.03
334 335 0.036875 AACCACTAGGCCACTTGCTC 59.963 55.000 5.01 0.00 40.92 4.26
335 336 1.279271 CTAACCACTAGGCCACTTGCT 59.721 52.381 5.01 0.00 40.92 3.91
336 337 1.278127 TCTAACCACTAGGCCACTTGC 59.722 52.381 5.01 0.00 39.06 4.01
337 338 2.678190 GCTCTAACCACTAGGCCACTTG 60.678 54.545 5.01 0.00 39.06 3.16
338 339 1.555533 GCTCTAACCACTAGGCCACTT 59.444 52.381 5.01 0.00 39.06 3.16
339 340 1.196012 GCTCTAACCACTAGGCCACT 58.804 55.000 5.01 0.00 39.06 4.00
340 341 0.902531 TGCTCTAACCACTAGGCCAC 59.097 55.000 5.01 0.00 39.06 5.01
341 342 1.195115 CTGCTCTAACCACTAGGCCA 58.805 55.000 5.01 0.00 39.06 5.36
342 343 1.486211 TCTGCTCTAACCACTAGGCC 58.514 55.000 0.00 0.00 39.06 5.19
343 344 3.493524 GGATTCTGCTCTAACCACTAGGC 60.494 52.174 0.00 0.00 39.06 3.93
344 345 3.706594 TGGATTCTGCTCTAACCACTAGG 59.293 47.826 0.00 0.00 42.21 3.02
345 346 5.295950 CATGGATTCTGCTCTAACCACTAG 58.704 45.833 0.00 0.00 0.00 2.57
346 347 4.101585 CCATGGATTCTGCTCTAACCACTA 59.898 45.833 5.56 0.00 0.00 2.74
347 348 3.118112 CCATGGATTCTGCTCTAACCACT 60.118 47.826 5.56 0.00 0.00 4.00
348 349 3.118261 TCCATGGATTCTGCTCTAACCAC 60.118 47.826 11.44 0.00 0.00 4.16
349 350 3.114606 TCCATGGATTCTGCTCTAACCA 58.885 45.455 11.44 0.00 0.00 3.67
350 351 3.737850 CTCCATGGATTCTGCTCTAACC 58.262 50.000 16.63 0.00 0.00 2.85
351 352 3.137533 GCTCCATGGATTCTGCTCTAAC 58.862 50.000 16.63 0.00 0.00 2.34
352 353 2.224137 CGCTCCATGGATTCTGCTCTAA 60.224 50.000 16.63 0.00 0.00 2.10
353 354 1.342496 CGCTCCATGGATTCTGCTCTA 59.658 52.381 16.63 0.00 0.00 2.43
354 355 0.106335 CGCTCCATGGATTCTGCTCT 59.894 55.000 16.63 0.00 0.00 4.09
355 356 0.105593 TCGCTCCATGGATTCTGCTC 59.894 55.000 16.63 0.00 0.00 4.26
356 357 0.763652 ATCGCTCCATGGATTCTGCT 59.236 50.000 16.63 0.00 0.00 4.24
357 358 0.873054 CATCGCTCCATGGATTCTGC 59.127 55.000 16.63 14.24 0.00 4.26
358 359 2.036862 TCTCATCGCTCCATGGATTCTG 59.963 50.000 16.63 10.75 0.00 3.02
359 360 2.323599 TCTCATCGCTCCATGGATTCT 58.676 47.619 16.63 0.00 0.00 2.40
360 361 2.827800 TCTCATCGCTCCATGGATTC 57.172 50.000 16.63 9.45 0.00 2.52
361 362 2.353505 CGATCTCATCGCTCCATGGATT 60.354 50.000 16.63 0.00 46.55 3.01
362 363 1.204231 CGATCTCATCGCTCCATGGAT 59.796 52.381 16.63 0.00 46.55 3.41
363 364 0.600057 CGATCTCATCGCTCCATGGA 59.400 55.000 15.27 15.27 46.55 3.41
364 365 3.119107 CGATCTCATCGCTCCATGG 57.881 57.895 4.97 4.97 46.55 3.66
373 374 4.318404 GGATTGAAAACTCGCGATCTCATC 60.318 45.833 10.36 9.94 0.00 2.92
374 375 3.557595 GGATTGAAAACTCGCGATCTCAT 59.442 43.478 10.36 0.78 0.00 2.90
375 376 2.930040 GGATTGAAAACTCGCGATCTCA 59.070 45.455 10.36 7.38 0.00 3.27
376 377 3.190874 AGGATTGAAAACTCGCGATCTC 58.809 45.455 10.36 4.56 0.00 2.75
377 378 3.252974 AGGATTGAAAACTCGCGATCT 57.747 42.857 10.36 0.00 0.00 2.75
378 379 3.542291 CGAAGGATTGAAAACTCGCGATC 60.542 47.826 10.36 4.58 0.00 3.69
379 380 2.348666 CGAAGGATTGAAAACTCGCGAT 59.651 45.455 10.36 0.00 0.00 4.58
380 381 1.724623 CGAAGGATTGAAAACTCGCGA 59.275 47.619 9.26 9.26 0.00 5.87
381 382 2.145053 CGAAGGATTGAAAACTCGCG 57.855 50.000 0.00 0.00 0.00 5.87
396 397 2.044123 CCATCTCCCCTTTTCCGAAG 57.956 55.000 0.00 0.00 0.00 3.79
668 669 1.091537 CTTTAGCGCCCGATTTCCAA 58.908 50.000 2.29 0.00 0.00 3.53
669 670 0.250793 TCTTTAGCGCCCGATTTCCA 59.749 50.000 2.29 0.00 0.00 3.53
670 671 0.656259 GTCTTTAGCGCCCGATTTCC 59.344 55.000 2.29 0.00 0.00 3.13
671 672 1.062148 GTGTCTTTAGCGCCCGATTTC 59.938 52.381 2.29 0.00 0.00 2.17
672 673 1.084289 GTGTCTTTAGCGCCCGATTT 58.916 50.000 2.29 0.00 0.00 2.17
673 674 0.743345 GGTGTCTTTAGCGCCCGATT 60.743 55.000 2.29 0.00 0.00 3.34
674 675 1.153429 GGTGTCTTTAGCGCCCGAT 60.153 57.895 2.29 0.00 0.00 4.18
675 676 2.102109 TTGGTGTCTTTAGCGCCCGA 62.102 55.000 2.29 0.00 35.76 5.14
676 677 1.231958 TTTGGTGTCTTTAGCGCCCG 61.232 55.000 2.29 0.00 35.76 6.13
677 678 1.173913 ATTTGGTGTCTTTAGCGCCC 58.826 50.000 2.29 0.00 35.76 6.13
678 679 2.354821 CCTATTTGGTGTCTTTAGCGCC 59.645 50.000 2.29 0.00 37.06 6.53
679 680 3.267483 TCCTATTTGGTGTCTTTAGCGC 58.733 45.455 0.00 0.00 37.07 5.92
680 681 5.235186 CAGATCCTATTTGGTGTCTTTAGCG 59.765 44.000 0.00 0.00 37.07 4.26
681 682 5.529060 CCAGATCCTATTTGGTGTCTTTAGC 59.471 44.000 0.00 0.00 37.07 3.09
682 683 5.529060 GCCAGATCCTATTTGGTGTCTTTAG 59.471 44.000 0.42 0.00 37.07 1.85
683 684 5.191722 AGCCAGATCCTATTTGGTGTCTTTA 59.808 40.000 0.42 0.00 37.07 1.85
684 685 4.018050 AGCCAGATCCTATTTGGTGTCTTT 60.018 41.667 0.42 0.00 37.07 2.52
685 686 3.525199 AGCCAGATCCTATTTGGTGTCTT 59.475 43.478 0.42 0.00 37.07 3.01
686 687 3.118531 AGCCAGATCCTATTTGGTGTCT 58.881 45.455 0.42 0.00 37.07 3.41
687 688 3.567478 AGCCAGATCCTATTTGGTGTC 57.433 47.619 0.42 0.00 37.07 3.67
688 689 4.910304 AGATAGCCAGATCCTATTTGGTGT 59.090 41.667 0.42 0.00 37.07 4.16
689 690 5.486526 GAGATAGCCAGATCCTATTTGGTG 58.513 45.833 0.42 0.00 37.07 4.17
690 691 4.534103 GGAGATAGCCAGATCCTATTTGGT 59.466 45.833 0.42 0.00 37.07 3.67
691 692 4.382470 CGGAGATAGCCAGATCCTATTTGG 60.382 50.000 0.00 0.00 35.06 3.28
692 693 4.382470 CCGGAGATAGCCAGATCCTATTTG 60.382 50.000 0.00 0.00 0.00 2.32
693 694 3.772025 CCGGAGATAGCCAGATCCTATTT 59.228 47.826 0.00 0.00 0.00 1.40
694 695 3.011821 TCCGGAGATAGCCAGATCCTATT 59.988 47.826 0.00 0.00 0.00 1.73
695 696 2.583101 TCCGGAGATAGCCAGATCCTAT 59.417 50.000 0.00 0.00 0.00 2.57
696 697 1.993301 TCCGGAGATAGCCAGATCCTA 59.007 52.381 0.00 0.00 0.00 2.94
697 698 0.780637 TCCGGAGATAGCCAGATCCT 59.219 55.000 0.00 0.00 0.00 3.24
698 699 0.892063 GTCCGGAGATAGCCAGATCC 59.108 60.000 3.06 0.00 0.00 3.36
699 700 0.523966 CGTCCGGAGATAGCCAGATC 59.476 60.000 3.06 0.00 0.00 2.75
700 701 0.178987 ACGTCCGGAGATAGCCAGAT 60.179 55.000 3.06 0.00 0.00 2.90
701 702 0.395311 AACGTCCGGAGATAGCCAGA 60.395 55.000 3.06 0.00 0.00 3.86
702 703 0.460311 AAACGTCCGGAGATAGCCAG 59.540 55.000 3.06 0.00 0.00 4.85
703 704 0.899720 AAAACGTCCGGAGATAGCCA 59.100 50.000 3.06 0.00 0.00 4.75
704 705 1.134907 TCAAAACGTCCGGAGATAGCC 60.135 52.381 3.06 0.00 0.00 3.93
705 706 2.288961 TCAAAACGTCCGGAGATAGC 57.711 50.000 3.06 0.00 0.00 2.97
706 707 4.041740 TCATCAAAACGTCCGGAGATAG 57.958 45.455 3.06 0.00 0.00 2.08
707 708 4.665833 ATCATCAAAACGTCCGGAGATA 57.334 40.909 3.06 0.00 0.00 1.98
708 709 3.543680 ATCATCAAAACGTCCGGAGAT 57.456 42.857 3.06 0.00 0.00 2.75
709 710 3.732774 CGTATCATCAAAACGTCCGGAGA 60.733 47.826 3.06 0.00 32.16 3.71
710 711 2.534349 CGTATCATCAAAACGTCCGGAG 59.466 50.000 3.06 1.12 32.16 4.63
711 712 2.532235 CGTATCATCAAAACGTCCGGA 58.468 47.619 0.00 0.00 32.16 5.14
712 713 1.591158 CCGTATCATCAAAACGTCCGG 59.409 52.381 0.00 0.00 34.90 5.14
713 714 2.264813 ACCGTATCATCAAAACGTCCG 58.735 47.619 0.00 0.00 34.90 4.79
714 715 3.518590 AGACCGTATCATCAAAACGTCC 58.481 45.455 0.00 0.00 34.90 4.79
715 716 4.171005 TGAGACCGTATCATCAAAACGTC 58.829 43.478 0.00 0.00 34.90 4.34
716 717 4.182693 TGAGACCGTATCATCAAAACGT 57.817 40.909 0.00 0.00 34.90 3.99
717 718 4.862574 TCTTGAGACCGTATCATCAAAACG 59.137 41.667 0.00 0.00 36.42 3.60
718 719 5.220228 CGTCTTGAGACCGTATCATCAAAAC 60.220 44.000 5.61 0.00 41.86 2.43
719 720 4.862574 CGTCTTGAGACCGTATCATCAAAA 59.137 41.667 5.61 0.00 41.86 2.44
720 721 4.082408 ACGTCTTGAGACCGTATCATCAAA 60.082 41.667 5.61 0.00 41.86 2.69
721 722 3.442625 ACGTCTTGAGACCGTATCATCAA 59.557 43.478 5.61 0.00 41.86 2.57
722 723 3.014623 ACGTCTTGAGACCGTATCATCA 58.985 45.455 5.61 0.00 41.86 3.07
723 724 3.694535 ACGTCTTGAGACCGTATCATC 57.305 47.619 5.61 0.00 41.86 2.92
724 725 4.174009 CAAACGTCTTGAGACCGTATCAT 58.826 43.478 5.61 0.00 41.86 2.45
725 726 3.571571 CAAACGTCTTGAGACCGTATCA 58.428 45.455 5.61 0.00 41.86 2.15
750 751 2.159653 CGTAGCACATCACCAAAAGAGC 60.160 50.000 0.00 0.00 0.00 4.09
793 803 5.240183 CAGCAAGAAAAAGACAGAATCCTGA 59.760 40.000 0.00 0.00 43.02 3.86
832 843 4.773013 CCAAATTCTGGCCAAATATGCTT 58.227 39.130 7.01 0.00 38.76 3.91
917 928 8.783093 CAAGGCGAATAAATAAATAGTGGATCA 58.217 33.333 0.00 0.00 0.00 2.92
943 954 7.404671 AGAAAACAATGTGGTATTGGTATCC 57.595 36.000 4.84 0.00 33.56 2.59
982 993 3.075641 GACGACAGGGAGGGGGTC 61.076 72.222 0.00 0.00 0.00 4.46
998 1013 1.183549 GGTCTAGAACGGAAGGCAGA 58.816 55.000 0.00 0.00 0.00 4.26
1044 1060 0.245539 CCATGGTTGCTCTTGCTTGG 59.754 55.000 2.57 0.00 40.48 3.61
1053 1069 1.033746 CAATCGGAGCCATGGTTGCT 61.034 55.000 17.67 6.59 43.03 3.91
1121 1137 2.267006 CCTGCTGCATCTGGTCGT 59.733 61.111 1.31 0.00 0.00 4.34
1194 1210 3.579302 CAGGTGGGGGTGAAGGCA 61.579 66.667 0.00 0.00 0.00 4.75
1237 1253 4.444388 CGTTTTTCTCGATCTGTTGACTGA 59.556 41.667 0.00 0.00 0.00 3.41
1274 1291 5.414789 TCCATCGATTACAAGAGGTCAAA 57.585 39.130 0.00 0.00 0.00 2.69
1275 1292 5.614324 ATCCATCGATTACAAGAGGTCAA 57.386 39.130 0.00 0.00 0.00 3.18
1276 1293 6.068670 TCTATCCATCGATTACAAGAGGTCA 58.931 40.000 0.00 0.00 0.00 4.02
1277 1294 6.431543 TCTCTATCCATCGATTACAAGAGGTC 59.568 42.308 17.84 0.00 32.04 3.85
1289 1306 2.256117 TCAGCGTCTCTATCCATCGA 57.744 50.000 0.00 0.00 0.00 3.59
1369 1387 4.166919 AGCAAATCTAGATTTACAGGGCCT 59.833 41.667 26.34 0.00 38.84 5.19
1371 1389 6.205658 CCTAAGCAAATCTAGATTTACAGGGC 59.794 42.308 26.34 23.51 38.84 5.19
1501 1521 2.095718 GCGTCCAGGTTCACAAATTCTC 60.096 50.000 0.00 0.00 0.00 2.87
1542 1562 4.032672 CACTCGCTCACAGAAAGATCAATC 59.967 45.833 0.00 0.00 0.00 2.67
1682 1702 6.812160 CACAGGGTAGTGATTAGTGAAGTAAC 59.188 42.308 0.00 0.00 42.05 2.50
1730 1752 4.022242 GCAGGAGCAGATAACGACCTAATA 60.022 45.833 0.00 0.00 41.58 0.98
1731 1753 3.243907 GCAGGAGCAGATAACGACCTAAT 60.244 47.826 0.00 0.00 41.58 1.73
1732 1754 2.100916 GCAGGAGCAGATAACGACCTAA 59.899 50.000 0.00 0.00 41.58 2.69
1738 1760 2.240500 GCGGCAGGAGCAGATAACG 61.241 63.158 0.00 0.00 44.61 3.18
1741 1763 1.144716 CTTGCGGCAGGAGCAGATA 59.855 57.895 6.18 0.00 46.01 1.98
1848 1870 9.626045 GGATCTCATTCATTTACGTTTTTCTTT 57.374 29.630 0.00 0.00 0.00 2.52
1849 1871 7.962918 CGGATCTCATTCATTTACGTTTTTCTT 59.037 33.333 0.00 0.00 0.00 2.52
1850 1872 7.414098 CCGGATCTCATTCATTTACGTTTTTCT 60.414 37.037 0.00 0.00 0.00 2.52
1851 1873 6.687105 CCGGATCTCATTCATTTACGTTTTTC 59.313 38.462 0.00 0.00 0.00 2.29
1852 1874 6.373216 TCCGGATCTCATTCATTTACGTTTTT 59.627 34.615 0.00 0.00 0.00 1.94
1853 1875 5.878116 TCCGGATCTCATTCATTTACGTTTT 59.122 36.000 0.00 0.00 0.00 2.43
1854 1876 5.293569 GTCCGGATCTCATTCATTTACGTTT 59.706 40.000 7.81 0.00 0.00 3.60
1855 1877 4.809426 GTCCGGATCTCATTCATTTACGTT 59.191 41.667 7.81 0.00 0.00 3.99
1856 1878 4.369182 GTCCGGATCTCATTCATTTACGT 58.631 43.478 7.81 0.00 0.00 3.57
1857 1879 3.425525 CGTCCGGATCTCATTCATTTACG 59.574 47.826 7.81 0.00 0.00 3.18
1858 1880 4.369182 ACGTCCGGATCTCATTCATTTAC 58.631 43.478 7.81 0.00 0.00 2.01
1859 1881 4.500887 GGACGTCCGGATCTCATTCATTTA 60.501 45.833 20.85 0.00 0.00 1.40
1860 1882 3.458189 GACGTCCGGATCTCATTCATTT 58.542 45.455 7.81 0.00 0.00 2.32
1861 1883 2.224066 GGACGTCCGGATCTCATTCATT 60.224 50.000 20.85 0.00 0.00 2.57
1862 1884 1.341531 GGACGTCCGGATCTCATTCAT 59.658 52.381 20.85 0.00 0.00 2.57
1863 1885 0.744874 GGACGTCCGGATCTCATTCA 59.255 55.000 20.85 0.00 0.00 2.57
1864 1886 3.571741 GGACGTCCGGATCTCATTC 57.428 57.895 20.85 0.00 0.00 2.67
1986 2010 4.616953 CAAATCCGCCTGTAGTTTGTTTT 58.383 39.130 0.00 0.00 0.00 2.43
2001 2025 1.102154 TGGTAAGCATGGCAAATCCG 58.898 50.000 0.00 0.00 37.80 4.18
2008 2032 4.485163 CAAGTTTAGTTGGTAAGCATGGC 58.515 43.478 0.00 0.00 0.00 4.40
2088 2156 8.681806 TGTATTCATAGAAGAGAGAAGACACAG 58.318 37.037 0.00 0.00 37.31 3.66
2096 2164 8.242729 TGATTGCTGTATTCATAGAAGAGAGA 57.757 34.615 3.16 0.00 0.00 3.10
2112 2180 2.362736 CTGGTACATGCTGATTGCTGT 58.637 47.619 0.00 0.00 43.37 4.40
2216 2284 7.272084 GCTTTCAGAACATGATAATGAACACAC 59.728 37.037 0.00 0.00 37.89 3.82
2270 2343 6.607198 CCATCCATGTTCAGGTAAAAAGGTAT 59.393 38.462 0.00 0.00 0.00 2.73
2274 2347 4.381932 GGCCATCCATGTTCAGGTAAAAAG 60.382 45.833 0.00 0.00 0.00 2.27
2365 2441 4.647611 TGAACCGGTCATTCAATTGTACT 58.352 39.130 8.04 0.00 33.16 2.73
2370 2446 8.405531 CACTAAATATGAACCGGTCATTCAATT 58.594 33.333 19.94 13.57 45.13 2.32
2468 2850 2.668457 CGCTGAGAATAGTGTGTCCAAC 59.332 50.000 0.00 0.00 0.00 3.77
2469 2851 2.299013 ACGCTGAGAATAGTGTGTCCAA 59.701 45.455 0.00 0.00 39.74 3.53
2470 2852 1.893137 ACGCTGAGAATAGTGTGTCCA 59.107 47.619 0.00 0.00 39.74 4.02
2471 2853 2.656560 ACGCTGAGAATAGTGTGTCC 57.343 50.000 0.00 0.00 39.74 4.02
2472 2854 3.987868 TCAAACGCTGAGAATAGTGTGTC 59.012 43.478 0.00 0.00 40.30 3.67
2473 2855 3.990092 TCAAACGCTGAGAATAGTGTGT 58.010 40.909 0.00 0.00 40.30 3.72
2474 2856 4.867047 AGATCAAACGCTGAGAATAGTGTG 59.133 41.667 0.00 0.00 40.30 3.82
2475 2857 5.078411 AGATCAAACGCTGAGAATAGTGT 57.922 39.130 0.00 0.00 42.81 3.55
2482 2864 7.433708 TTTAAATCAAGATCAAACGCTGAGA 57.566 32.000 0.00 0.00 37.52 3.27
2489 2871 7.699812 CCTAGCTGCTTTAAATCAAGATCAAAC 59.300 37.037 7.79 0.00 0.00 2.93
2491 2873 6.886459 ACCTAGCTGCTTTAAATCAAGATCAA 59.114 34.615 7.79 0.00 0.00 2.57
2551 2933 5.071653 ACAAAGGGGTCATTAACTGCAAAAT 59.928 36.000 0.00 0.00 0.00 1.82
2642 3024 2.692557 ACCAAGTGCTTTTGTGTATGCA 59.307 40.909 0.00 0.00 0.00 3.96
2815 3197 2.041366 GATTCCGAAGCGCTGAAGCC 62.041 60.000 12.58 3.14 37.91 4.35
2957 3339 4.956075 ACCAACAATGACTGGAAAACTCTT 59.044 37.500 11.87 0.00 36.49 2.85
3088 3472 7.333423 GTCTGCATAACATACCAGTTAAGACAA 59.667 37.037 10.16 0.00 38.26 3.18
3107 3491 2.093973 CGGGTGTTCTTCTAGTCTGCAT 60.094 50.000 0.00 0.00 0.00 3.96
3108 3492 1.272490 CGGGTGTTCTTCTAGTCTGCA 59.728 52.381 0.00 0.00 0.00 4.41
3224 3608 6.366061 GTGTGAGAATTTGATGGTAAAAAGGC 59.634 38.462 0.00 0.00 0.00 4.35
3263 3647 1.843851 GAGAGAGAGTGAGGAGGAGGA 59.156 57.143 0.00 0.00 0.00 3.71
3303 3691 6.663523 TGGATATGTGTGTGTTAGAGAGAGAA 59.336 38.462 0.00 0.00 0.00 2.87
3304 3692 6.187682 TGGATATGTGTGTGTTAGAGAGAGA 58.812 40.000 0.00 0.00 0.00 3.10
3338 3730 7.182026 TGAAATAGATGGATTATGGTCCCGTAT 59.818 37.037 0.00 0.00 37.48 3.06
3675 4067 0.682209 ACATGCATCCTCCTGTTGGC 60.682 55.000 0.00 0.00 0.00 4.52
3724 4116 3.055819 TGGGTTCCAATTTCTCTCTCTCG 60.056 47.826 0.00 0.00 0.00 4.04
3725 4117 4.559862 TGGGTTCCAATTTCTCTCTCTC 57.440 45.455 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.