Multiple sequence alignment - TraesCS3B01G303900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G303900 chr3B 100.000 2904 0 0 1 2904 487912327 487909424 0.000000e+00 5363.0
1 TraesCS3B01G303900 chr3B 100.000 1703 0 0 3071 4773 487909257 487907555 0.000000e+00 3145.0
2 TraesCS3B01G303900 chr3B 81.067 750 107 29 3384 4126 736417113 736417834 2.490000e-157 566.0
3 TraesCS3B01G303900 chr3B 93.103 58 3 1 2122 2178 487909435 487909492 3.060000e-12 84.2
4 TraesCS3B01G303900 chr3B 93.103 58 3 1 2836 2893 487910150 487910206 3.060000e-12 84.2
5 TraesCS3B01G303900 chr3B 94.444 54 2 1 3249 3301 487909027 487908974 1.100000e-11 82.4
6 TraesCS3B01G303900 chr3B 94.444 54 2 1 3301 3354 487909079 487909027 1.100000e-11 82.4
7 TraesCS3B01G303900 chr3D 91.025 2351 82 50 1 2314 374212182 374209924 0.000000e+00 3053.0
8 TraesCS3B01G303900 chr3D 94.493 1707 58 12 3101 4773 374209163 374207459 0.000000e+00 2599.0
9 TraesCS3B01G303900 chr3D 93.484 399 19 5 2510 2904 374209585 374209190 1.910000e-163 586.0
10 TraesCS3B01G303900 chr3D 94.382 89 3 2 2392 2480 374209896 374209810 8.330000e-28 135.0
11 TraesCS3B01G303900 chr3D 94.444 54 2 1 3249 3301 374208963 374208910 1.100000e-11 82.4
12 TraesCS3B01G303900 chr3D 94.340 53 2 1 2836 2888 374210049 374210100 3.960000e-11 80.5
13 TraesCS3B01G303900 chr3A 93.954 1687 70 15 3101 4772 496705597 496703928 0.000000e+00 2521.0
14 TraesCS3B01G303900 chr3A 88.438 2145 102 59 1 2081 496708339 496706277 0.000000e+00 2453.0
15 TraesCS3B01G303900 chr3A 87.045 687 44 27 2220 2904 496706267 496705624 0.000000e+00 734.0
16 TraesCS3B01G303900 chr3A 84.173 139 14 7 1113 1251 118566639 118566769 1.390000e-25 128.0
17 TraesCS3B01G303900 chr3A 96.491 57 2 0 2122 2178 496705635 496705691 1.410000e-15 95.3
18 TraesCS3B01G303900 chr3A 96.296 54 2 0 3301 3354 496705449 496705396 6.580000e-14 89.8
19 TraesCS3B01G303900 chr3A 96.296 54 1 1 3249 3301 496705396 496705343 2.370000e-13 87.9
20 TraesCS3B01G303900 chr3A 100.000 31 0 0 2084 2114 675875942 675875972 1.860000e-04 58.4
21 TraesCS3B01G303900 chr4A 82.736 753 106 18 3384 4126 658262253 658261515 0.000000e+00 649.0
22 TraesCS3B01G303900 chr7B 82.819 745 106 15 3392 4126 164157811 164158543 0.000000e+00 647.0
23 TraesCS3B01G303900 chr2A 83.463 641 89 13 3496 4126 778619716 778620349 8.900000e-162 580.0
24 TraesCS3B01G303900 chr2D 81.447 760 93 22 3392 4116 596163728 596162982 3.200000e-161 579.0
25 TraesCS3B01G303900 chr2D 93.878 49 1 2 2178 2225 643319548 643319501 6.630000e-09 73.1
26 TraesCS3B01G303900 chr6B 81.142 753 105 26 3384 4126 351224239 351224964 1.930000e-158 569.0
27 TraesCS3B01G303900 chr6B 91.071 56 2 3 2178 2231 438629445 438629499 6.630000e-09 73.1
28 TraesCS3B01G303900 chr2B 81.142 753 102 25 3384 4126 785240839 785240117 6.930000e-158 568.0
29 TraesCS3B01G303900 chr1B 81.818 154 20 7 1113 1266 433633726 433633581 6.490000e-24 122.0
30 TraesCS3B01G303900 chr1B 76.349 241 45 10 1398 1626 642392312 642392072 8.390000e-23 119.0
31 TraesCS3B01G303900 chr1B 95.556 45 1 1 2173 2216 131502984 131502940 2.380000e-08 71.3
32 TraesCS3B01G303900 chr1D 75.934 241 46 10 1398 1626 465522431 465522191 3.900000e-21 113.0
33 TraesCS3B01G303900 chr1D 93.750 48 2 1 2172 2218 464255506 464255553 2.380000e-08 71.3
34 TraesCS3B01G303900 chr1D 90.385 52 3 2 2178 2228 352413919 352413869 3.080000e-07 67.6
35 TraesCS3B01G303900 chr1A 82.031 128 23 0 1499 1626 557935723 557935596 5.050000e-20 110.0
36 TraesCS3B01G303900 chr7D 80.000 130 23 2 1499 1625 632756271 632756400 5.090000e-15 93.5
37 TraesCS3B01G303900 chr6A 78.626 131 25 2 1499 1626 575589572 575589702 3.060000e-12 84.2
38 TraesCS3B01G303900 chr5D 94.000 50 2 1 2178 2226 386674080 386674129 1.840000e-09 75.0
39 TraesCS3B01G303900 chr5D 92.683 41 3 0 2077 2117 485358136 485358176 5.160000e-05 60.2
40 TraesCS3B01G303900 chr7A 95.556 45 2 0 2178 2222 524641800 524641844 6.630000e-09 73.1
41 TraesCS3B01G303900 chr4D 95.238 42 2 0 2178 2219 93339415 93339456 3.080000e-07 67.6
42 TraesCS3B01G303900 chr5A 88.235 51 6 0 2811 2861 403876082 403876132 1.430000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G303900 chr3B 487907555 487912327 4772 True 2168.20 5363 97.2220 1 4773 4 chr3B.!!$R1 4772
1 TraesCS3B01G303900 chr3B 736417113 736417834 721 False 566.00 566 81.0670 3384 4126 1 chr3B.!!$F1 742
2 TraesCS3B01G303900 chr3D 374207459 374212182 4723 True 1291.08 3053 93.5656 1 4773 5 chr3D.!!$R1 4772
3 TraesCS3B01G303900 chr3A 496703928 496708339 4411 True 1177.14 2521 92.4058 1 4772 5 chr3A.!!$R1 4771
4 TraesCS3B01G303900 chr4A 658261515 658262253 738 True 649.00 649 82.7360 3384 4126 1 chr4A.!!$R1 742
5 TraesCS3B01G303900 chr7B 164157811 164158543 732 False 647.00 647 82.8190 3392 4126 1 chr7B.!!$F1 734
6 TraesCS3B01G303900 chr2A 778619716 778620349 633 False 580.00 580 83.4630 3496 4126 1 chr2A.!!$F1 630
7 TraesCS3B01G303900 chr2D 596162982 596163728 746 True 579.00 579 81.4470 3392 4116 1 chr2D.!!$R1 724
8 TraesCS3B01G303900 chr6B 351224239 351224964 725 False 569.00 569 81.1420 3384 4126 1 chr6B.!!$F1 742
9 TraesCS3B01G303900 chr2B 785240117 785240839 722 True 568.00 568 81.1420 3384 4126 1 chr2B.!!$R1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
965 1024 0.030603 AGAACCTCTCCTCCCCATCC 60.031 60.000 0.00 0.0 0.00 3.51 F
966 1025 0.030603 GAACCTCTCCTCCCCATCCT 60.031 60.000 0.00 0.0 0.00 3.24 F
2010 2108 1.404315 GGACGCCAGTTCAAGGAGTAG 60.404 57.143 0.00 0.0 39.36 2.57 F
3382 3704 0.685097 TCCACTAGTGTCAACCCTGC 59.315 55.000 21.18 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2506 0.107703 TTTCAGTATGGGGAGCGCTG 60.108 55.000 18.48 0.0 36.16 5.18 R
2547 2864 0.302890 GCAACCGAGATTGAGCATCG 59.697 55.000 0.00 0.0 38.61 3.84 R
3608 3938 3.207265 ACAGTCAATGTGTTGGTAGCA 57.793 42.857 0.00 0.0 41.91 3.49 R
4469 4854 1.293179 GCACCCCATTGCCTCAAAC 59.707 57.895 0.00 0.0 36.42 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 3.753434 CCGGCAGCTCTCGTGTCT 61.753 66.667 0.00 0.00 0.00 3.41
218 225 2.248140 CTTGCGCGCTCGTCAAAA 59.752 55.556 33.29 15.11 38.14 2.44
220 227 3.515286 TTGCGCGCTCGTCAAAACC 62.515 57.895 33.29 0.00 38.14 3.27
223 230 4.084888 GCGCTCGTCAAAACCGGG 62.085 66.667 6.32 0.00 0.00 5.73
224 231 2.356553 CGCTCGTCAAAACCGGGA 60.357 61.111 6.32 0.00 0.00 5.14
225 232 2.664436 CGCTCGTCAAAACCGGGAC 61.664 63.158 6.32 1.89 0.00 4.46
226 233 1.301479 GCTCGTCAAAACCGGGACT 60.301 57.895 6.32 0.00 31.88 3.85
227 234 0.037975 GCTCGTCAAAACCGGGACTA 60.038 55.000 6.32 0.00 31.88 2.59
228 235 1.992170 CTCGTCAAAACCGGGACTAG 58.008 55.000 6.32 0.76 31.88 2.57
229 236 1.271656 CTCGTCAAAACCGGGACTAGT 59.728 52.381 6.32 0.00 31.88 2.57
280 287 2.463589 TAGGCTGAACTTGCGGGTGG 62.464 60.000 0.00 0.00 0.00 4.61
294 301 1.227409 GGTGGTTTTTGGCCCAACG 60.227 57.895 0.00 0.00 31.17 4.10
295 302 1.885388 GTGGTTTTTGGCCCAACGC 60.885 57.895 0.00 0.00 31.17 4.84
296 303 2.359169 TGGTTTTTGGCCCAACGCA 61.359 52.632 0.00 0.00 40.31 5.24
297 304 1.153349 GGTTTTTGGCCCAACGCAA 60.153 52.632 0.00 0.00 40.31 4.85
318 325 5.606348 AAGTCAGAAGAGAACAGACTTGT 57.394 39.130 5.43 0.00 45.00 3.16
334 341 5.983720 CAGACTTGTCTTAGAAGGTTTCGAA 59.016 40.000 0.00 0.00 34.02 3.71
376 389 1.635663 CCCCAACATGTCGAGAACGC 61.636 60.000 0.00 0.00 39.58 4.84
400 413 5.456192 ACATCGCGTTTTATCTTCTTCTG 57.544 39.130 5.77 0.00 0.00 3.02
412 425 1.876156 CTTCTTCTGGCTGGTTGTCAC 59.124 52.381 0.00 0.00 0.00 3.67
466 480 2.046892 CCGGGAAGCTGTCACCTG 60.047 66.667 0.00 0.00 0.00 4.00
476 490 1.306141 TGTCACCTGGCCTCCTAGG 60.306 63.158 3.32 0.82 40.01 3.02
503 517 3.370527 GCCATTAGCAGACAAGTCCCTTA 60.371 47.826 0.00 0.00 42.97 2.69
504 518 4.843728 CCATTAGCAGACAAGTCCCTTAA 58.156 43.478 0.00 0.00 0.00 1.85
571 607 1.280133 TGAGGCAGTTATCAAGCAGCT 59.720 47.619 0.00 0.00 0.00 4.24
646 690 4.825422 ACAGCAGTAGAGTACGTACTACA 58.175 43.478 27.44 15.42 40.68 2.74
647 691 4.629200 ACAGCAGTAGAGTACGTACTACAC 59.371 45.833 27.44 24.56 40.68 2.90
648 692 4.628766 CAGCAGTAGAGTACGTACTACACA 59.371 45.833 27.44 10.55 40.68 3.72
649 693 5.121298 CAGCAGTAGAGTACGTACTACACAA 59.879 44.000 27.44 9.17 40.68 3.33
650 694 5.350914 AGCAGTAGAGTACGTACTACACAAG 59.649 44.000 27.44 21.27 40.68 3.16
651 695 5.121454 GCAGTAGAGTACGTACTACACAAGT 59.879 44.000 27.44 11.41 40.68 3.16
655 699 8.713271 AGTAGAGTACGTACTACACAAGTAAAC 58.287 37.037 27.44 10.85 42.37 2.01
690 734 8.522542 AATTACAGTAGAGTAGTACCTCTTGG 57.477 38.462 6.93 1.59 41.89 3.61
727 771 2.410730 CGAACAATGGTCGAACTGTACC 59.589 50.000 16.60 0.00 36.24 3.34
738 784 0.879765 AACTGTACCACTCGTCGAGG 59.120 55.000 25.25 12.69 33.35 4.63
739 785 0.959372 ACTGTACCACTCGTCGAGGG 60.959 60.000 25.25 21.80 33.35 4.30
740 786 0.675837 CTGTACCACTCGTCGAGGGA 60.676 60.000 26.02 3.39 34.53 4.20
741 787 0.675837 TGTACCACTCGTCGAGGGAG 60.676 60.000 26.02 17.20 34.53 4.30
749 795 2.179517 GTCGAGGGAGACGCACAG 59.820 66.667 0.00 0.00 0.00 3.66
822 872 0.868406 CAAGAGGACAAGCGGACAAC 59.132 55.000 0.00 0.00 0.00 3.32
840 890 1.240256 ACGGCCACGCATAAAGAAAA 58.760 45.000 2.24 0.00 46.04 2.29
913 967 3.700350 CTCCCACTCCCCTCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
914 968 3.695825 TCCCACTCCCCTCCCCTC 61.696 72.222 0.00 0.00 0.00 4.30
915 969 4.825679 CCCACTCCCCTCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
916 970 4.825679 CCACTCCCCTCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
917 971 4.825679 CACTCCCCTCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
919 973 4.825679 CTCCCCTCCCCTCCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
921 975 4.825679 CCCCTCCCCTCCCCACTC 62.826 77.778 0.00 0.00 0.00 3.51
962 1021 1.695065 TAGAGAACCTCTCCTCCCCA 58.305 55.000 0.00 0.00 44.42 4.96
963 1022 1.022903 AGAGAACCTCTCCTCCCCAT 58.977 55.000 0.00 0.00 44.42 4.00
964 1023 1.062505 AGAGAACCTCTCCTCCCCATC 60.063 57.143 0.00 0.00 44.42 3.51
965 1024 0.030603 AGAACCTCTCCTCCCCATCC 60.031 60.000 0.00 0.00 0.00 3.51
966 1025 0.030603 GAACCTCTCCTCCCCATCCT 60.031 60.000 0.00 0.00 0.00 3.24
972 1031 1.946707 TCCTCCCCATCCTCCTCCA 60.947 63.158 0.00 0.00 0.00 3.86
1637 1720 6.979465 ACTGGTTAGTGTTCACTTCTACTAC 58.021 40.000 10.74 1.63 35.34 2.73
1644 1727 7.614124 AGTGTTCACTTCTACTACTAGTAGC 57.386 40.000 26.54 9.29 45.93 3.58
1652 1735 6.315891 ACTTCTACTACTAGTAGCACTTTCCG 59.684 42.308 26.54 11.91 45.93 4.30
1664 1747 2.372350 CACTTTCCGTCTTTGCGTTTC 58.628 47.619 0.00 0.00 0.00 2.78
1701 1787 6.070995 TGGTATTACCTAGGTGTTCAGTTCTG 60.071 42.308 25.33 0.00 39.58 3.02
1708 1794 4.522722 AGGTGTTCAGTTCTGCTAGTAC 57.477 45.455 0.00 0.00 0.00 2.73
1766 1864 6.825213 GGACGTTGGAAGGGTAAAATTACTAT 59.175 38.462 0.00 0.00 34.16 2.12
1767 1865 7.986889 GGACGTTGGAAGGGTAAAATTACTATA 59.013 37.037 0.00 0.00 34.16 1.31
1768 1866 9.551734 GACGTTGGAAGGGTAAAATTACTATAT 57.448 33.333 0.00 0.00 34.16 0.86
1769 1867 9.910267 ACGTTGGAAGGGTAAAATTACTATATT 57.090 29.630 3.55 0.00 34.16 1.28
1773 1871 8.842280 TGGAAGGGTAAAATTACTATATTTGCG 58.158 33.333 3.55 0.00 34.16 4.85
1774 1872 9.059260 GGAAGGGTAAAATTACTATATTTGCGA 57.941 33.333 3.55 0.00 34.16 5.10
1776 1874 9.623000 AAGGGTAAAATTACTATATTTGCGAGT 57.377 29.630 3.55 0.00 34.16 4.18
1970 2068 6.882678 TGGGAGTAAGTTCCTTTAATTGCTAC 59.117 38.462 0.00 0.00 37.40 3.58
1971 2069 7.110810 GGGAGTAAGTTCCTTTAATTGCTACT 58.889 38.462 0.00 0.00 37.40 2.57
1972 2070 7.280428 GGGAGTAAGTTCCTTTAATTGCTACTC 59.720 40.741 0.00 0.00 37.40 2.59
1973 2071 7.280428 GGAGTAAGTTCCTTTAATTGCTACTCC 59.720 40.741 8.29 8.29 40.93 3.85
2010 2108 1.404315 GGACGCCAGTTCAAGGAGTAG 60.404 57.143 0.00 0.00 39.36 2.57
2026 2124 7.403231 TCAAGGAGTAGTCCCAGAATATCTTTT 59.597 37.037 13.30 0.00 45.26 2.27
2028 2126 8.485578 AGGAGTAGTCCCAGAATATCTTTTAG 57.514 38.462 13.30 0.00 45.26 1.85
2103 2201 4.519906 TCCCTCCATCCCAAAATAAGTC 57.480 45.455 0.00 0.00 0.00 3.01
2115 2213 8.848474 TCCCAAAATAAGTCTCTCAACTTTAG 57.152 34.615 0.00 0.00 40.01 1.85
2131 2229 5.225899 ACTTTAGTCGAAACCAACAACAC 57.774 39.130 0.00 0.00 0.00 3.32
2132 2230 4.939439 ACTTTAGTCGAAACCAACAACACT 59.061 37.500 0.00 0.00 0.00 3.55
2133 2231 5.413523 ACTTTAGTCGAAACCAACAACACTT 59.586 36.000 0.00 0.00 0.00 3.16
2134 2232 5.883503 TTAGTCGAAACCAACAACACTTT 57.116 34.783 0.00 0.00 0.00 2.66
2173 2274 5.395103 GCCAATTTAACATCAAGGCCACATA 60.395 40.000 5.01 0.00 34.71 2.29
2206 2307 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
2207 2308 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
2208 2309 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2209 2310 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2210 2311 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2211 2312 2.374170 ACACTTATTTTGGGACGGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
2212 2313 3.583966 ACACTTATTTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 0.00 3.08
2213 2314 4.189231 CACTTATTTTGGGACGGAGGTAG 58.811 47.826 0.00 0.00 0.00 3.18
2214 2315 3.842436 ACTTATTTTGGGACGGAGGTAGT 59.158 43.478 0.00 0.00 0.00 2.73
2215 2316 5.025453 ACTTATTTTGGGACGGAGGTAGTA 58.975 41.667 0.00 0.00 0.00 1.82
2216 2317 3.900966 ATTTTGGGACGGAGGTAGTAC 57.099 47.619 0.00 0.00 0.00 2.73
2217 2318 2.610438 TTTGGGACGGAGGTAGTACT 57.390 50.000 0.00 0.00 0.00 2.73
2218 2319 1.843368 TTGGGACGGAGGTAGTACTG 58.157 55.000 5.39 0.00 0.00 2.74
2317 2437 4.256920 GGCAGATATTAGGGCTACATGTG 58.743 47.826 9.11 0.00 0.00 3.21
2339 2459 4.100035 TGTTGCCTCATAATCTCTGATCGT 59.900 41.667 0.00 0.00 0.00 3.73
2352 2472 6.218108 TCTCTGATCGTACTAGTAGTCACA 57.782 41.667 5.96 1.77 0.00 3.58
2353 2473 6.274579 TCTCTGATCGTACTAGTAGTCACAG 58.725 44.000 5.96 10.85 0.00 3.66
2354 2474 5.975282 TCTGATCGTACTAGTAGTCACAGT 58.025 41.667 5.96 0.00 0.00 3.55
2356 2476 4.802563 TGATCGTACTAGTAGTCACAGTCG 59.197 45.833 5.96 0.93 0.00 4.18
2357 2477 4.440839 TCGTACTAGTAGTCACAGTCGA 57.559 45.455 5.96 3.45 0.00 4.20
2358 2478 5.003692 TCGTACTAGTAGTCACAGTCGAT 57.996 43.478 5.96 0.00 0.00 3.59
2359 2479 6.136541 TCGTACTAGTAGTCACAGTCGATA 57.863 41.667 5.96 0.00 0.00 2.92
2360 2480 6.564328 TCGTACTAGTAGTCACAGTCGATAA 58.436 40.000 5.96 0.00 0.00 1.75
2361 2481 7.205992 TCGTACTAGTAGTCACAGTCGATAAT 58.794 38.462 5.96 0.00 0.00 1.28
2362 2482 7.708322 TCGTACTAGTAGTCACAGTCGATAATT 59.292 37.037 5.96 0.00 0.00 1.40
2363 2483 7.792967 CGTACTAGTAGTCACAGTCGATAATTG 59.207 40.741 5.96 0.00 0.00 2.32
2364 2484 7.860918 ACTAGTAGTCACAGTCGATAATTGA 57.139 36.000 0.00 0.00 0.00 2.57
2365 2485 8.453238 ACTAGTAGTCACAGTCGATAATTGAT 57.547 34.615 0.00 0.00 0.00 2.57
2366 2486 8.904834 ACTAGTAGTCACAGTCGATAATTGATT 58.095 33.333 0.00 0.00 0.00 2.57
2367 2487 9.737427 CTAGTAGTCACAGTCGATAATTGATTT 57.263 33.333 0.00 0.00 0.00 2.17
2368 2488 8.412608 AGTAGTCACAGTCGATAATTGATTTG 57.587 34.615 0.00 0.00 0.00 2.32
2369 2489 8.035394 AGTAGTCACAGTCGATAATTGATTTGT 58.965 33.333 0.00 0.00 0.00 2.83
2370 2490 7.672983 AGTCACAGTCGATAATTGATTTGTT 57.327 32.000 0.00 0.00 0.00 2.83
2371 2491 8.099364 AGTCACAGTCGATAATTGATTTGTTT 57.901 30.769 0.00 0.00 0.00 2.83
2372 2492 8.567948 AGTCACAGTCGATAATTGATTTGTTTT 58.432 29.630 0.00 0.00 0.00 2.43
2373 2493 9.820229 GTCACAGTCGATAATTGATTTGTTTTA 57.180 29.630 0.00 0.00 0.00 1.52
2376 2496 9.787532 ACAGTCGATAATTGATTTGTTTTATGG 57.212 29.630 0.00 0.00 0.00 2.74
2377 2497 9.236691 CAGTCGATAATTGATTTGTTTTATGGG 57.763 33.333 0.00 0.00 0.00 4.00
2378 2498 8.966868 AGTCGATAATTGATTTGTTTTATGGGT 58.033 29.630 0.00 0.00 0.00 4.51
2379 2499 9.581099 GTCGATAATTGATTTGTTTTATGGGTT 57.419 29.630 0.00 0.00 0.00 4.11
2384 2504 7.814264 ATTGATTTGTTTTATGGGTTTTGCA 57.186 28.000 0.00 0.00 0.00 4.08
2385 2505 6.610741 TGATTTGTTTTATGGGTTTTGCAC 57.389 33.333 0.00 0.00 0.00 4.57
2386 2506 5.529060 TGATTTGTTTTATGGGTTTTGCACC 59.471 36.000 0.00 0.00 46.46 5.01
2441 2561 5.509163 CCTCGAGGAAAAGAAGACTGTAACA 60.509 44.000 28.21 0.00 37.39 2.41
2494 2616 6.079712 AGCTTGTTATATTTCCTTGTCCCT 57.920 37.500 0.00 0.00 0.00 4.20
2508 2825 4.039609 CCTTGTCCCTTGAAAGAAAGCAAT 59.960 41.667 0.00 0.00 0.00 3.56
2512 2829 5.128499 TGTCCCTTGAAAGAAAGCAATGAAA 59.872 36.000 0.00 0.00 0.00 2.69
2643 2960 4.539870 CGGATTATGTAGCCATTTGCAAG 58.460 43.478 0.00 0.00 44.83 4.01
2681 3001 2.437281 ACATGGATCTTCACTGGCCTAG 59.563 50.000 3.32 2.01 0.00 3.02
2878 3199 8.764558 TGTTAAATTGGCTACTGGAATCTACTA 58.235 33.333 0.00 0.00 0.00 1.82
2879 3200 9.780186 GTTAAATTGGCTACTGGAATCTACTAT 57.220 33.333 0.00 0.00 0.00 2.12
2888 3209 5.665459 ACTGGAATCTACTATGAGTGTTGC 58.335 41.667 0.00 0.00 0.00 4.17
3288 3609 5.603596 ACAGTACTTGTATTCGTGTTTCCA 58.396 37.500 0.00 0.00 38.56 3.53
3289 3610 6.228258 ACAGTACTTGTATTCGTGTTTCCAT 58.772 36.000 0.00 0.00 38.56 3.41
3291 3612 7.015289 CAGTACTTGTATTCGTGTTTCCATTG 58.985 38.462 0.00 0.00 0.00 2.82
3382 3704 0.685097 TCCACTAGTGTCAACCCTGC 59.315 55.000 21.18 0.00 0.00 4.85
3580 3910 4.599041 TGGGATATGTTGGAACCTGAAAG 58.401 43.478 0.00 0.00 0.00 2.62
3655 3990 9.895138 TTAACCTTTATACCTGAACATTAGGTC 57.105 33.333 0.00 0.00 45.19 3.85
3664 3999 6.017192 ACCTGAACATTAGGTCTCTGTAGAA 58.983 40.000 0.00 0.00 45.19 2.10
4169 4552 7.540400 TGTTGTACAATTTATTTGCGATTGAGG 59.460 33.333 12.26 0.00 39.03 3.86
4172 4555 7.967854 TGTACAATTTATTTGCGATTGAGGAAG 59.032 33.333 0.00 0.00 39.03 3.46
4201 4584 7.009540 GCTAATGTACAATTTGATCAAGTTGCC 59.990 37.037 31.98 25.03 40.35 4.52
4247 4630 7.164230 AGAAGTACAACAATTTGACAAACCA 57.836 32.000 1.94 0.00 36.48 3.67
4248 4631 7.257722 AGAAGTACAACAATTTGACAAACCAG 58.742 34.615 1.94 0.00 36.48 4.00
4260 4645 6.942532 TTGACAAACCAGAATGCCTATATC 57.057 37.500 0.00 0.00 31.97 1.63
4406 4791 1.555075 TCAGGAGAAAACTGGGGATCG 59.445 52.381 0.00 0.00 36.62 3.69
4422 4807 4.216687 GGGGATCGTCTATCTAGTTGTCAG 59.783 50.000 0.00 0.00 34.75 3.51
4448 4833 1.617357 GAACTGGTAGAACGGTCTGGT 59.383 52.381 14.77 3.82 35.12 4.00
4469 4854 2.295885 GCATCCTGAAGATTCACCTGG 58.704 52.381 0.00 0.00 30.59 4.45
4474 4859 3.394274 TCCTGAAGATTCACCTGGTTTGA 59.606 43.478 0.00 0.00 32.90 2.69
4518 4903 0.750546 CGGTCATAGGGTCGTCCTCA 60.751 60.000 0.00 0.00 44.06 3.86
4556 4941 2.896443 GTCTTCCTCCTCGGCAGG 59.104 66.667 0.00 0.00 42.01 4.85
4607 4992 3.023949 GCTCCATCCCACAGCGAGT 62.024 63.158 0.00 0.00 0.00 4.18
4645 5042 4.717629 TCTTGCGCCCAGACGTCG 62.718 66.667 10.46 5.16 34.88 5.12
4731 5128 1.072331 GTCTTCCTCTTCTTGTGCCCA 59.928 52.381 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.245539 CCCCACCACTACGTACAGTG 59.754 60.000 10.89 10.89 44.60 3.66
218 225 3.891049 ACGAAATAGTACTAGTCCCGGT 58.109 45.455 20.96 8.84 0.00 5.28
220 227 4.521943 CGAACGAAATAGTACTAGTCCCG 58.478 47.826 17.62 17.62 0.00 5.14
223 230 4.732442 GTGGCGAACGAAATAGTACTAGTC 59.268 45.833 8.85 7.42 0.00 2.59
224 231 4.666237 GTGGCGAACGAAATAGTACTAGT 58.334 43.478 8.85 2.42 0.00 2.57
247 254 2.534903 GCCTAATTCGGCTCCACGC 61.535 63.158 13.56 0.00 46.63 5.34
257 264 1.401905 CCCGCAAGTTCAGCCTAATTC 59.598 52.381 0.00 0.00 0.00 2.17
280 287 0.461163 ACTTGCGTTGGGCCAAAAAC 60.461 50.000 22.82 13.74 42.61 2.43
294 301 3.988819 AGTCTGTTCTCTTCTGACTTGC 58.011 45.455 0.00 0.00 39.72 4.01
296 303 5.362430 AGACAAGTCTGTTCTCTTCTGACTT 59.638 40.000 1.20 10.69 46.76 3.01
297 304 4.892934 AGACAAGTCTGTTCTCTTCTGACT 59.107 41.667 1.20 0.00 42.71 3.41
312 319 5.107951 CGTTCGAAACCTTCTAAGACAAGTC 60.108 44.000 0.00 0.00 0.00 3.01
318 325 3.054878 GCACGTTCGAAACCTTCTAAGA 58.945 45.455 0.00 0.00 0.00 2.10
350 357 2.046700 ACATGTTGGGGCGTACGG 60.047 61.111 18.39 0.00 0.00 4.02
357 364 1.635663 GCGTTCTCGACATGTTGGGG 61.636 60.000 13.24 6.85 39.71 4.96
376 389 5.729883 CAGAAGAAGATAAAACGCGATGTTG 59.270 40.000 15.93 0.00 40.84 3.33
476 490 2.012673 CTTGTCTGCTAATGGCTCCAC 58.987 52.381 0.00 0.00 42.39 4.02
571 607 2.157640 AATTTCGGGCATTGGATGGA 57.842 45.000 0.00 0.00 0.00 3.41
633 677 8.560576 TTTGTTTACTTGTGTAGTACGTACTC 57.439 34.615 30.53 21.12 39.05 2.59
634 678 8.925161 TTTTGTTTACTTGTGTAGTACGTACT 57.075 30.769 29.62 29.62 39.05 2.73
690 734 2.096819 TGTTCGGAGCAACAAGTCAAAC 59.903 45.455 0.00 0.00 33.21 2.93
738 784 0.868406 CCTTGTTTCTGTGCGTCTCC 59.132 55.000 0.00 0.00 0.00 3.71
739 785 1.261619 CACCTTGTTTCTGTGCGTCTC 59.738 52.381 0.00 0.00 0.00 3.36
740 786 1.299541 CACCTTGTTTCTGTGCGTCT 58.700 50.000 0.00 0.00 0.00 4.18
741 787 0.307760 CCACCTTGTTTCTGTGCGTC 59.692 55.000 0.00 0.00 0.00 5.19
749 795 2.644992 CCTGCGCCACCTTGTTTC 59.355 61.111 4.18 0.00 0.00 2.78
822 872 1.466950 TCTTTTCTTTATGCGTGGCCG 59.533 47.619 0.00 0.00 37.07 6.13
840 890 0.410270 TATTTTGCCCGGGGGTTTCT 59.590 50.000 25.28 0.00 37.65 2.52
922 976 3.689002 CTTTGGAGGGAGGCGAGGC 62.689 68.421 0.00 0.00 0.00 4.70
923 977 2.586792 CTTTGGAGGGAGGCGAGG 59.413 66.667 0.00 0.00 0.00 4.63
962 1021 2.264378 TGGGGGAGTGGAGGAGGAT 61.264 63.158 0.00 0.00 0.00 3.24
963 1022 2.874245 TGGGGGAGTGGAGGAGGA 60.874 66.667 0.00 0.00 0.00 3.71
964 1023 2.689034 GTGGGGGAGTGGAGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
965 1024 2.689034 GGTGGGGGAGTGGAGGAG 60.689 72.222 0.00 0.00 0.00 3.69
966 1025 4.348495 GGGTGGGGGAGTGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
1501 1581 1.012086 CATCCATGCTCACCTTCACG 58.988 55.000 0.00 0.00 0.00 4.35
1504 1584 1.442526 CGCCATCCATGCTCACCTTC 61.443 60.000 0.00 0.00 0.00 3.46
1637 1720 3.368236 GCAAAGACGGAAAGTGCTACTAG 59.632 47.826 0.00 0.00 32.43 2.57
1644 1727 2.223157 TGAAACGCAAAGACGGAAAGTG 60.223 45.455 0.00 0.00 37.37 3.16
1664 1747 3.134081 AGGTAATACCACTGGATCCGTTG 59.866 47.826 12.54 6.34 41.95 4.10
1701 1787 5.524281 GGCAAAGATGGAAACTAGTACTAGC 59.476 44.000 26.54 12.84 36.66 3.42
1708 1794 5.464168 CAAGTTGGCAAAGATGGAAACTAG 58.536 41.667 0.00 0.00 0.00 2.57
1766 1864 9.549078 TGGATGTTATGTTATTACTCGCAAATA 57.451 29.630 0.00 0.00 0.00 1.40
1767 1865 8.445275 TGGATGTTATGTTATTACTCGCAAAT 57.555 30.769 0.00 0.00 0.00 2.32
1768 1866 7.851387 TGGATGTTATGTTATTACTCGCAAA 57.149 32.000 0.00 0.00 0.00 3.68
1769 1867 7.931407 AGATGGATGTTATGTTATTACTCGCAA 59.069 33.333 0.00 0.00 0.00 4.85
1770 1868 7.441836 AGATGGATGTTATGTTATTACTCGCA 58.558 34.615 0.00 0.00 0.00 5.10
1771 1869 7.815068 AGAGATGGATGTTATGTTATTACTCGC 59.185 37.037 0.00 0.00 0.00 5.03
1772 1870 9.133627 CAGAGATGGATGTTATGTTATTACTCG 57.866 37.037 0.00 0.00 0.00 4.18
1781 1879 9.775854 CTTTAGAATCAGAGATGGATGTTATGT 57.224 33.333 0.00 0.00 0.00 2.29
1782 1880 9.217278 CCTTTAGAATCAGAGATGGATGTTATG 57.783 37.037 0.00 0.00 0.00 1.90
1970 2068 5.008811 CGTCCACAGTAAATAGGAGTAGGAG 59.991 48.000 0.00 0.00 0.00 3.69
1971 2069 4.885907 CGTCCACAGTAAATAGGAGTAGGA 59.114 45.833 0.00 0.00 0.00 2.94
1972 2070 4.499357 GCGTCCACAGTAAATAGGAGTAGG 60.499 50.000 0.00 0.00 0.00 3.18
1973 2071 4.499357 GGCGTCCACAGTAAATAGGAGTAG 60.499 50.000 0.00 0.00 0.00 2.57
2010 2108 9.886132 TTAAGACACTAAAAGATATTCTGGGAC 57.114 33.333 0.00 0.00 0.00 4.46
2026 2124 8.453320 TCGACGAGATTTGTATTTAAGACACTA 58.547 33.333 0.00 0.00 0.00 2.74
2028 2126 7.502177 TCGACGAGATTTGTATTTAAGACAC 57.498 36.000 0.00 0.00 0.00 3.67
2081 2179 4.733988 AGACTTATTTTGGGATGGAGGGAT 59.266 41.667 0.00 0.00 0.00 3.85
2103 2201 5.522460 TGTTGGTTTCGACTAAAGTTGAGAG 59.478 40.000 0.00 0.00 39.43 3.20
2115 2213 5.225899 ACTAAAGTGTTGTTGGTTTCGAC 57.774 39.130 0.00 0.00 0.00 4.20
2131 2229 8.738645 AAATTGGCTACTGGAATCTACTAAAG 57.261 34.615 0.00 0.00 0.00 1.85
2133 2231 9.609346 GTTAAATTGGCTACTGGAATCTACTAA 57.391 33.333 0.00 0.00 0.00 2.24
2134 2232 8.764558 TGTTAAATTGGCTACTGGAATCTACTA 58.235 33.333 0.00 0.00 0.00 1.82
2206 2307 6.466885 TGAATCTTAAGCAGTACTACCTCC 57.533 41.667 0.00 0.00 0.00 4.30
2207 2308 8.821894 CAAATGAATCTTAAGCAGTACTACCTC 58.178 37.037 0.00 0.00 0.00 3.85
2208 2309 8.322091 ACAAATGAATCTTAAGCAGTACTACCT 58.678 33.333 0.00 0.00 0.00 3.08
2209 2310 8.494016 ACAAATGAATCTTAAGCAGTACTACC 57.506 34.615 0.00 0.00 0.00 3.18
2210 2311 9.760660 CAACAAATGAATCTTAAGCAGTACTAC 57.239 33.333 0.00 0.00 0.00 2.73
2211 2312 9.502091 ACAACAAATGAATCTTAAGCAGTACTA 57.498 29.630 0.00 0.00 0.00 1.82
2212 2313 8.396272 ACAACAAATGAATCTTAAGCAGTACT 57.604 30.769 0.00 0.00 0.00 2.73
2215 2316 8.299570 CCTAACAACAAATGAATCTTAAGCAGT 58.700 33.333 0.00 0.00 0.00 4.40
2216 2317 8.299570 ACCTAACAACAAATGAATCTTAAGCAG 58.700 33.333 0.00 0.00 0.00 4.24
2217 2318 8.177119 ACCTAACAACAAATGAATCTTAAGCA 57.823 30.769 0.00 0.00 0.00 3.91
2218 2319 8.915654 CAACCTAACAACAAATGAATCTTAAGC 58.084 33.333 0.00 0.00 0.00 3.09
2317 2437 4.626042 ACGATCAGAGATTATGAGGCAAC 58.374 43.478 0.00 0.00 0.00 4.17
2339 2459 8.953368 TCAATTATCGACTGTGACTACTAGTA 57.047 34.615 1.89 1.89 0.00 1.82
2352 2472 8.966868 ACCCATAAAACAAATCAATTATCGACT 58.033 29.630 0.00 0.00 0.00 4.18
2353 2473 9.581099 AACCCATAAAACAAATCAATTATCGAC 57.419 29.630 0.00 0.00 0.00 4.20
2358 2478 9.342308 TGCAAAACCCATAAAACAAATCAATTA 57.658 25.926 0.00 0.00 0.00 1.40
2359 2479 8.134261 GTGCAAAACCCATAAAACAAATCAATT 58.866 29.630 0.00 0.00 0.00 2.32
2360 2480 7.255416 GGTGCAAAACCCATAAAACAAATCAAT 60.255 33.333 0.00 0.00 44.02 2.57
2361 2481 6.038714 GGTGCAAAACCCATAAAACAAATCAA 59.961 34.615 0.00 0.00 44.02 2.57
2362 2482 5.529060 GGTGCAAAACCCATAAAACAAATCA 59.471 36.000 0.00 0.00 44.02 2.57
2363 2483 5.996219 GGTGCAAAACCCATAAAACAAATC 58.004 37.500 0.00 0.00 44.02 2.17
2377 2497 2.050077 GGAGCGCTGGTGCAAAAC 60.050 61.111 18.48 0.00 39.64 2.43
2378 2498 3.294493 GGGAGCGCTGGTGCAAAA 61.294 61.111 18.48 0.00 39.64 2.44
2382 2502 4.175337 TATGGGGAGCGCTGGTGC 62.175 66.667 18.48 0.00 0.00 5.01
2383 2503 2.203070 GTATGGGGAGCGCTGGTG 60.203 66.667 18.48 0.00 0.00 4.17
2384 2504 2.365635 AGTATGGGGAGCGCTGGT 60.366 61.111 18.48 0.00 0.00 4.00
2385 2505 1.971505 TTCAGTATGGGGAGCGCTGG 61.972 60.000 18.48 0.00 36.16 4.85
2386 2506 0.107703 TTTCAGTATGGGGAGCGCTG 60.108 55.000 18.48 0.00 36.16 5.18
2387 2507 0.618458 TTTTCAGTATGGGGAGCGCT 59.382 50.000 11.27 11.27 36.16 5.92
2388 2508 1.680338 ATTTTCAGTATGGGGAGCGC 58.320 50.000 0.00 0.00 36.16 5.92
2389 2509 3.016736 ACAATTTTCAGTATGGGGAGCG 58.983 45.455 0.00 0.00 36.16 5.03
2390 2510 4.338400 GGTACAATTTTCAGTATGGGGAGC 59.662 45.833 0.00 0.00 36.16 4.70
2489 2611 4.853924 TCATTGCTTTCTTTCAAGGGAC 57.146 40.909 0.00 0.00 0.00 4.46
2490 2612 5.363580 AGTTTCATTGCTTTCTTTCAAGGGA 59.636 36.000 0.00 0.00 0.00 4.20
2494 2616 4.810491 GGCAGTTTCATTGCTTTCTTTCAA 59.190 37.500 0.00 0.00 41.27 2.69
2529 2846 4.572389 GCATCGTAGATATAGCCCAATTGG 59.428 45.833 18.21 18.21 45.12 3.16
2547 2864 0.302890 GCAACCGAGATTGAGCATCG 59.697 55.000 0.00 0.00 38.61 3.84
2681 3001 5.665459 TCTAAGCTTTCTATCCAGTGCTTC 58.335 41.667 3.20 0.00 40.55 3.86
2878 3199 4.557296 CGAAAATTCACCAGCAACACTCAT 60.557 41.667 0.00 0.00 0.00 2.90
2879 3200 3.243035 CGAAAATTCACCAGCAACACTCA 60.243 43.478 0.00 0.00 0.00 3.41
3095 3416 7.385267 AGCCAATACATGTATGAAAGCAAAAA 58.615 30.769 18.94 0.00 0.00 1.94
3096 3417 6.934056 AGCCAATACATGTATGAAAGCAAAA 58.066 32.000 18.94 0.00 0.00 2.44
3099 3420 6.207221 CCATAGCCAATACATGTATGAAAGCA 59.793 38.462 18.94 10.23 0.00 3.91
3288 3609 9.585099 CATATGGTAAAAACTATGCAACACAAT 57.415 29.630 0.00 0.00 0.00 2.71
3289 3610 8.031864 CCATATGGTAAAAACTATGCAACACAA 58.968 33.333 14.09 0.00 0.00 3.33
3291 3612 7.767261 TCCATATGGTAAAAACTATGCAACAC 58.233 34.615 21.28 0.00 36.34 3.32
3332 3654 5.187381 TCATATGCAACACAATGGGAAACAT 59.813 36.000 0.00 0.00 43.07 2.71
3450 3773 9.463443 AAACTATTTTCTGCATACAAGTGTTTC 57.537 29.630 0.00 0.00 0.00 2.78
3608 3938 3.207265 ACAGTCAATGTGTTGGTAGCA 57.793 42.857 0.00 0.00 41.91 3.49
3677 4025 7.655732 GCATGTTTGTAATCCAAAGTTTTACCT 59.344 33.333 0.00 0.00 43.52 3.08
3678 4026 7.655732 AGCATGTTTGTAATCCAAAGTTTTACC 59.344 33.333 0.00 0.00 43.52 2.85
3679 4027 8.587952 AGCATGTTTGTAATCCAAAGTTTTAC 57.412 30.769 0.00 0.00 43.52 2.01
3680 4028 8.637986 AGAGCATGTTTGTAATCCAAAGTTTTA 58.362 29.630 0.00 0.00 43.52 1.52
3682 4030 6.925165 CAGAGCATGTTTGTAATCCAAAGTTT 59.075 34.615 0.00 0.00 43.52 2.66
3683 4031 6.265196 TCAGAGCATGTTTGTAATCCAAAGTT 59.735 34.615 0.00 0.00 43.52 2.66
3684 4032 5.769662 TCAGAGCATGTTTGTAATCCAAAGT 59.230 36.000 0.00 0.00 43.52 2.66
3685 4033 6.258230 TCAGAGCATGTTTGTAATCCAAAG 57.742 37.500 0.00 0.00 43.52 2.77
3689 4037 5.412594 TCAGTTCAGAGCATGTTTGTAATCC 59.587 40.000 0.00 0.00 0.00 3.01
3891 4245 8.993121 ACATTACAGACATTTGACACTAAGAAG 58.007 33.333 0.00 0.00 0.00 2.85
4169 4552 7.475015 TGATCAAATTGTACATTAGCAGCTTC 58.525 34.615 0.00 0.00 0.00 3.86
4172 4555 7.253422 ACTTGATCAAATTGTACATTAGCAGC 58.747 34.615 9.88 0.00 0.00 5.25
4201 4584 2.156117 TGGCGTACAAAGAAATCGTTCG 59.844 45.455 0.00 0.00 38.90 3.95
4247 4630 7.355101 TCGGATTAGGTAGATATAGGCATTCT 58.645 38.462 0.00 0.00 0.00 2.40
4248 4631 7.584122 TCGGATTAGGTAGATATAGGCATTC 57.416 40.000 0.00 0.00 0.00 2.67
4260 4645 4.021456 TGGTATGCACATCGGATTAGGTAG 60.021 45.833 0.00 0.00 0.00 3.18
4406 4791 8.682710 AGTTCAAGATCTGACAACTAGATAGAC 58.317 37.037 10.92 0.00 35.14 2.59
4422 4807 4.082136 AGACCGTTCTACCAGTTCAAGATC 60.082 45.833 0.00 0.00 0.00 2.75
4448 4833 2.356432 CCAGGTGAATCTTCAGGATGCA 60.356 50.000 0.00 0.00 37.64 3.96
4469 4854 1.293179 GCACCCCATTGCCTCAAAC 59.707 57.895 0.00 0.00 36.42 2.93
4494 4879 2.416260 GACCCTATGACCGGCGAC 59.584 66.667 9.30 2.28 0.00 5.19
4583 4968 4.864334 GTGGGATGGAGCCAGCGG 62.864 72.222 0.00 0.00 32.44 5.52
4624 5021 2.097038 CGTCTGGGCGCAAGAAGAG 61.097 63.158 16.57 7.55 43.02 2.85
4685 5082 1.529948 AGGAACTCCGGTCACGTGA 60.530 57.895 15.76 15.76 42.08 4.35
4690 5087 1.837051 ACAGCAGGAACTCCGGTCA 60.837 57.895 0.00 0.00 42.08 4.02
4731 5128 1.810532 GGCGTCGACATCTTCCTCT 59.189 57.895 17.16 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.