Multiple sequence alignment - TraesCS3B01G303200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G303200 chr3B 100.000 4451 0 0 1 4451 487444379 487439929 0.000000e+00 8220.0
1 TraesCS3B01G303200 chr3D 92.656 3690 202 25 530 4197 373603920 373600278 0.000000e+00 5249.0
2 TraesCS3B01G303200 chr3D 77.992 777 136 23 1391 2142 593688220 593688986 5.250000e-124 455.0
3 TraesCS3B01G303200 chr3D 78.664 539 103 8 3240 3773 593690033 593690564 9.160000e-92 348.0
4 TraesCS3B01G303200 chr3D 77.509 538 115 5 3238 3773 593654128 593653595 7.180000e-83 318.0
5 TraesCS3B01G303200 chr3D 93.855 179 10 1 4273 4451 373599996 373599819 7.340000e-68 268.0
6 TraesCS3B01G303200 chr3D 91.139 79 6 1 4195 4272 373600022 373599944 6.090000e-19 106.0
7 TraesCS3B01G303200 chr3A 88.784 3397 274 44 896 4270 495074913 495071602 0.000000e+00 4063.0
8 TraesCS3B01G303200 chr3A 88.395 405 25 14 446 832 495076850 495076450 6.740000e-128 468.0
9 TraesCS3B01G303200 chr3A 78.652 534 97 11 3238 3768 724543391 724543910 5.510000e-89 339.0
10 TraesCS3B01G303200 chr3A 95.429 175 8 0 4277 4451 495071648 495071474 3.390000e-71 279.0
11 TraesCS3B01G303200 chr7B 75.868 1094 185 43 1054 2124 518463500 518464537 6.690000e-133 484.0
12 TraesCS3B01G303200 chr7B 89.262 149 15 1 4073 4221 726940885 726940738 7.600000e-43 185.0
13 TraesCS3B01G303200 chr7D 87.097 155 18 2 4290 4443 72122832 72122985 1.650000e-39 174.0
14 TraesCS3B01G303200 chr7D 87.582 153 14 3 4074 4223 72122696 72122846 5.920000e-39 172.0
15 TraesCS3B01G303200 chr7D 90.551 127 8 3 4074 4197 540791383 540791258 9.900000e-37 165.0
16 TraesCS3B01G303200 chr2B 85.246 61 9 0 392 452 373183775 373183715 3.720000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G303200 chr3B 487439929 487444379 4450 True 8220.000000 8220 100.000000 1 4451 1 chr3B.!!$R1 4450
1 TraesCS3B01G303200 chr3D 373599819 373603920 4101 True 1874.333333 5249 92.550000 530 4451 3 chr3D.!!$R2 3921
2 TraesCS3B01G303200 chr3D 593688220 593690564 2344 False 401.500000 455 78.328000 1391 3773 2 chr3D.!!$F1 2382
3 TraesCS3B01G303200 chr3D 593653595 593654128 533 True 318.000000 318 77.509000 3238 3773 1 chr3D.!!$R1 535
4 TraesCS3B01G303200 chr3A 495071474 495076850 5376 True 1603.333333 4063 90.869333 446 4451 3 chr3A.!!$R1 4005
5 TraesCS3B01G303200 chr3A 724543391 724543910 519 False 339.000000 339 78.652000 3238 3768 1 chr3A.!!$F1 530
6 TraesCS3B01G303200 chr7B 518463500 518464537 1037 False 484.000000 484 75.868000 1054 2124 1 chr7B.!!$F1 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.104882 TAGGTGTGGACTGTGGGGAA 60.105 55.0 0.00 0.0 0.00 3.97 F
236 237 0.179215 CGAACACATTTCGGCTGCTC 60.179 55.0 0.00 0.0 38.19 4.26 F
982 2474 0.267356 CCTTGATCCTCCTCCTCCCT 59.733 60.0 0.00 0.0 0.00 4.20 F
2492 4050 0.465278 GATTCCTTCTCCCAGGCTGC 60.465 60.0 9.56 0.0 33.35 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 2813 0.179124 GTGAGGTGCACGAGATCCTC 60.179 60.0 11.45 11.19 44.54 3.71 R
1452 2962 0.400213 TCCCGACCATGCAAAGTTCT 59.600 50.0 0.00 0.00 0.00 3.01 R
2606 4167 0.520827 GATCCGTCGACGTGTCTCAC 60.521 60.0 33.49 14.95 37.74 3.51 R
4058 5655 0.179134 GTCCCGTCTCAATCGACTGG 60.179 60.0 0.00 0.00 38.99 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.348064 TCTGGAAACTCCACGATGGT 58.652 50.000 0.00 0.00 42.67 3.55
20 21 1.275291 TCTGGAAACTCCACGATGGTC 59.725 52.381 0.00 0.00 42.67 4.02
21 22 0.323629 TGGAAACTCCACGATGGTCC 59.676 55.000 0.00 0.00 42.67 4.46
22 23 0.613777 GGAAACTCCACGATGGTCCT 59.386 55.000 0.00 0.00 39.03 3.85
23 24 1.405661 GGAAACTCCACGATGGTCCTC 60.406 57.143 0.00 0.00 39.03 3.71
24 25 0.613777 AAACTCCACGATGGTCCTCC 59.386 55.000 0.00 0.00 39.03 4.30
25 26 0.252284 AACTCCACGATGGTCCTCCT 60.252 55.000 0.00 0.00 39.03 3.69
26 27 0.252284 ACTCCACGATGGTCCTCCTT 60.252 55.000 0.00 0.00 39.03 3.36
27 28 0.176680 CTCCACGATGGTCCTCCTTG 59.823 60.000 0.00 0.00 39.03 3.61
28 29 0.544357 TCCACGATGGTCCTCCTTGT 60.544 55.000 0.00 0.00 39.03 3.16
29 30 0.108138 CCACGATGGTCCTCCTTGTC 60.108 60.000 0.00 0.00 31.35 3.18
30 31 0.458543 CACGATGGTCCTCCTTGTCG 60.459 60.000 0.00 0.00 38.59 4.35
31 32 0.611062 ACGATGGTCCTCCTTGTCGA 60.611 55.000 0.00 0.00 37.30 4.20
32 33 0.179134 CGATGGTCCTCCTTGTCGAC 60.179 60.000 9.11 9.11 36.61 4.20
33 34 0.179134 GATGGTCCTCCTTGTCGACG 60.179 60.000 11.62 0.00 34.23 5.12
34 35 0.611062 ATGGTCCTCCTTGTCGACGA 60.611 55.000 11.62 8.40 34.23 4.20
35 36 1.241990 TGGTCCTCCTTGTCGACGAG 61.242 60.000 23.70 23.70 34.23 4.18
36 37 1.153997 GTCCTCCTTGTCGACGAGC 60.154 63.158 24.98 9.15 0.00 5.03
37 38 1.303398 TCCTCCTTGTCGACGAGCT 60.303 57.895 24.98 0.00 0.00 4.09
38 39 0.894184 TCCTCCTTGTCGACGAGCTT 60.894 55.000 24.98 0.00 0.00 3.74
39 40 0.734253 CCTCCTTGTCGACGAGCTTG 60.734 60.000 24.98 16.21 0.00 4.01
40 41 1.347817 CTCCTTGTCGACGAGCTTGC 61.348 60.000 24.98 0.00 0.00 4.01
41 42 1.664649 CCTTGTCGACGAGCTTGCA 60.665 57.895 24.98 0.00 0.00 4.08
42 43 1.221466 CCTTGTCGACGAGCTTGCAA 61.221 55.000 24.98 0.00 0.00 4.08
43 44 0.792640 CTTGTCGACGAGCTTGCAAT 59.207 50.000 19.63 0.00 0.00 3.56
44 45 1.992667 CTTGTCGACGAGCTTGCAATA 59.007 47.619 19.63 0.00 0.00 1.90
45 46 1.629013 TGTCGACGAGCTTGCAATAG 58.371 50.000 11.62 0.00 0.00 1.73
46 47 0.299003 GTCGACGAGCTTGCAATAGC 59.701 55.000 0.00 0.00 41.53 2.97
56 57 4.465040 GCTTGCAATAGCTAGATGTGTC 57.535 45.455 0.00 0.00 44.81 3.67
57 58 3.060003 GCTTGCAATAGCTAGATGTGTCG 60.060 47.826 0.00 0.00 44.81 4.35
58 59 4.363138 CTTGCAATAGCTAGATGTGTCGA 58.637 43.478 0.00 0.00 44.81 4.20
59 60 4.590850 TGCAATAGCTAGATGTGTCGAT 57.409 40.909 0.00 0.00 42.74 3.59
60 61 4.948847 TGCAATAGCTAGATGTGTCGATT 58.051 39.130 0.00 0.00 42.74 3.34
61 62 4.984785 TGCAATAGCTAGATGTGTCGATTC 59.015 41.667 0.00 0.00 42.74 2.52
62 63 4.387256 GCAATAGCTAGATGTGTCGATTCC 59.613 45.833 0.00 0.00 37.91 3.01
63 64 5.532557 CAATAGCTAGATGTGTCGATTCCA 58.467 41.667 0.00 0.00 0.00 3.53
64 65 3.724508 AGCTAGATGTGTCGATTCCAG 57.275 47.619 0.00 0.00 0.00 3.86
65 66 2.131183 GCTAGATGTGTCGATTCCAGC 58.869 52.381 0.00 0.00 0.00 4.85
66 67 2.389059 CTAGATGTGTCGATTCCAGCG 58.611 52.381 0.00 0.00 0.00 5.18
67 68 0.179100 AGATGTGTCGATTCCAGCGG 60.179 55.000 0.00 0.00 0.00 5.52
68 69 1.766143 GATGTGTCGATTCCAGCGGC 61.766 60.000 0.00 0.00 0.00 6.53
69 70 2.125512 GTGTCGATTCCAGCGGCT 60.126 61.111 0.00 0.00 33.92 5.52
70 71 1.141019 GTGTCGATTCCAGCGGCTA 59.859 57.895 0.26 0.00 33.92 3.93
71 72 0.459585 GTGTCGATTCCAGCGGCTAA 60.460 55.000 0.26 0.00 33.92 3.09
72 73 0.179111 TGTCGATTCCAGCGGCTAAG 60.179 55.000 0.26 0.00 33.92 2.18
73 74 0.876342 GTCGATTCCAGCGGCTAAGG 60.876 60.000 0.26 0.12 0.00 2.69
74 75 1.040893 TCGATTCCAGCGGCTAAGGA 61.041 55.000 0.26 3.12 0.00 3.36
75 76 0.179084 CGATTCCAGCGGCTAAGGAA 60.179 55.000 20.19 20.19 44.77 3.36
76 77 1.300481 GATTCCAGCGGCTAAGGAAC 58.700 55.000 20.28 12.42 43.60 3.62
77 78 0.618458 ATTCCAGCGGCTAAGGAACA 59.382 50.000 20.28 4.02 43.60 3.18
78 79 0.398696 TTCCAGCGGCTAAGGAACAA 59.601 50.000 15.59 0.00 36.55 2.83
79 80 0.398696 TCCAGCGGCTAAGGAACAAA 59.601 50.000 0.26 0.00 0.00 2.83
80 81 1.004277 TCCAGCGGCTAAGGAACAAAT 59.996 47.619 0.26 0.00 0.00 2.32
81 82 1.401905 CCAGCGGCTAAGGAACAAATC 59.598 52.381 0.26 0.00 0.00 2.17
82 83 2.083774 CAGCGGCTAAGGAACAAATCA 58.916 47.619 0.26 0.00 0.00 2.57
83 84 2.487762 CAGCGGCTAAGGAACAAATCAA 59.512 45.455 0.26 0.00 0.00 2.57
84 85 3.057596 CAGCGGCTAAGGAACAAATCAAA 60.058 43.478 0.26 0.00 0.00 2.69
85 86 3.191371 AGCGGCTAAGGAACAAATCAAAG 59.809 43.478 0.00 0.00 0.00 2.77
86 87 3.057526 GCGGCTAAGGAACAAATCAAAGT 60.058 43.478 0.00 0.00 0.00 2.66
87 88 4.558697 GCGGCTAAGGAACAAATCAAAGTT 60.559 41.667 0.00 0.00 0.00 2.66
88 89 4.917415 CGGCTAAGGAACAAATCAAAGTTG 59.083 41.667 0.00 0.00 0.00 3.16
89 90 5.230182 GGCTAAGGAACAAATCAAAGTTGG 58.770 41.667 0.00 0.00 0.00 3.77
90 91 5.230182 GCTAAGGAACAAATCAAAGTTGGG 58.770 41.667 0.00 0.00 0.00 4.12
91 92 3.751479 AGGAACAAATCAAAGTTGGGC 57.249 42.857 0.00 0.00 0.00 5.36
92 93 2.035832 AGGAACAAATCAAAGTTGGGCG 59.964 45.455 0.00 0.00 0.00 6.13
93 94 2.403259 GAACAAATCAAAGTTGGGCGG 58.597 47.619 0.00 0.00 0.00 6.13
94 95 0.678950 ACAAATCAAAGTTGGGCGGG 59.321 50.000 0.00 0.00 0.00 6.13
95 96 0.965439 CAAATCAAAGTTGGGCGGGA 59.035 50.000 0.00 0.00 0.00 5.14
96 97 1.067635 CAAATCAAAGTTGGGCGGGAG 60.068 52.381 0.00 0.00 0.00 4.30
97 98 0.611896 AATCAAAGTTGGGCGGGAGG 60.612 55.000 0.00 0.00 0.00 4.30
98 99 1.789576 ATCAAAGTTGGGCGGGAGGT 61.790 55.000 0.00 0.00 0.00 3.85
99 100 1.128809 TCAAAGTTGGGCGGGAGGTA 61.129 55.000 0.00 0.00 0.00 3.08
100 101 0.676782 CAAAGTTGGGCGGGAGGTAG 60.677 60.000 0.00 0.00 0.00 3.18
101 102 1.848886 AAAGTTGGGCGGGAGGTAGG 61.849 60.000 0.00 0.00 0.00 3.18
102 103 3.007323 GTTGGGCGGGAGGTAGGT 61.007 66.667 0.00 0.00 0.00 3.08
103 104 3.006728 TTGGGCGGGAGGTAGGTG 61.007 66.667 0.00 0.00 0.00 4.00
104 105 3.857521 TTGGGCGGGAGGTAGGTGT 62.858 63.158 0.00 0.00 0.00 4.16
105 106 3.782443 GGGCGGGAGGTAGGTGTG 61.782 72.222 0.00 0.00 0.00 3.82
106 107 3.782443 GGCGGGAGGTAGGTGTGG 61.782 72.222 0.00 0.00 0.00 4.17
107 108 2.682494 GCGGGAGGTAGGTGTGGA 60.682 66.667 0.00 0.00 0.00 4.02
108 109 3.015312 GCGGGAGGTAGGTGTGGAC 62.015 68.421 0.00 0.00 0.00 4.02
109 110 1.305046 CGGGAGGTAGGTGTGGACT 60.305 63.158 0.00 0.00 0.00 3.85
110 111 1.605058 CGGGAGGTAGGTGTGGACTG 61.605 65.000 0.00 0.00 0.00 3.51
111 112 0.544595 GGGAGGTAGGTGTGGACTGT 60.545 60.000 0.00 0.00 0.00 3.55
112 113 0.608640 GGAGGTAGGTGTGGACTGTG 59.391 60.000 0.00 0.00 0.00 3.66
113 114 0.608640 GAGGTAGGTGTGGACTGTGG 59.391 60.000 0.00 0.00 0.00 4.17
114 115 0.836400 AGGTAGGTGTGGACTGTGGG 60.836 60.000 0.00 0.00 0.00 4.61
115 116 1.677552 GTAGGTGTGGACTGTGGGG 59.322 63.158 0.00 0.00 0.00 4.96
116 117 0.834687 GTAGGTGTGGACTGTGGGGA 60.835 60.000 0.00 0.00 0.00 4.81
117 118 0.104882 TAGGTGTGGACTGTGGGGAA 60.105 55.000 0.00 0.00 0.00 3.97
118 119 1.228154 GGTGTGGACTGTGGGGAAC 60.228 63.158 0.00 0.00 0.00 3.62
130 131 2.754658 GGGAACCGGCGAGAGAGA 60.755 66.667 9.30 0.00 40.86 3.10
131 132 2.776913 GGGAACCGGCGAGAGAGAG 61.777 68.421 9.30 0.00 40.86 3.20
132 133 2.103340 GAACCGGCGAGAGAGAGC 59.897 66.667 9.30 0.00 0.00 4.09
133 134 2.676822 AACCGGCGAGAGAGAGCA 60.677 61.111 9.30 0.00 34.54 4.26
134 135 2.606155 GAACCGGCGAGAGAGAGCAG 62.606 65.000 9.30 0.00 34.54 4.24
135 136 3.137459 CCGGCGAGAGAGAGCAGT 61.137 66.667 9.30 0.00 34.54 4.40
136 137 2.407210 CGGCGAGAGAGAGCAGTC 59.593 66.667 0.00 0.00 34.54 3.51
137 138 2.407210 GGCGAGAGAGAGCAGTCG 59.593 66.667 0.00 0.00 35.51 4.18
139 140 2.407210 CGAGAGAGAGCAGTCGCC 59.593 66.667 0.00 0.00 39.83 5.54
140 141 2.407210 GAGAGAGAGCAGTCGCCG 59.593 66.667 0.00 0.00 39.83 6.46
141 142 3.749735 GAGAGAGAGCAGTCGCCGC 62.750 68.421 0.00 0.00 39.83 6.53
142 143 4.863925 GAGAGAGCAGTCGCCGCC 62.864 72.222 0.00 0.00 39.83 6.13
144 145 4.742201 GAGAGCAGTCGCCGCCAA 62.742 66.667 0.00 0.00 39.83 4.52
145 146 4.314440 AGAGCAGTCGCCGCCAAA 62.314 61.111 0.00 0.00 39.83 3.28
146 147 3.793144 GAGCAGTCGCCGCCAAAG 61.793 66.667 0.00 0.00 39.83 2.77
166 167 2.242113 CAAGGAGTGCAGTGTCAGC 58.758 57.895 0.00 0.00 0.00 4.26
167 168 0.533531 CAAGGAGTGCAGTGTCAGCA 60.534 55.000 0.00 0.00 40.19 4.41
168 169 0.399454 AAGGAGTGCAGTGTCAGCAT 59.601 50.000 0.00 0.00 44.79 3.79
169 170 0.321387 AGGAGTGCAGTGTCAGCATG 60.321 55.000 0.00 0.00 44.79 4.06
170 171 1.303799 GGAGTGCAGTGTCAGCATGG 61.304 60.000 0.00 0.00 44.79 3.66
171 172 0.321034 GAGTGCAGTGTCAGCATGGA 60.321 55.000 0.00 0.00 44.79 3.41
172 173 0.321387 AGTGCAGTGTCAGCATGGAG 60.321 55.000 0.00 0.00 44.79 3.86
173 174 1.002990 TGCAGTGTCAGCATGGAGG 60.003 57.895 0.00 0.00 37.02 4.30
174 175 1.002868 GCAGTGTCAGCATGGAGGT 60.003 57.895 0.00 0.00 36.16 3.85
175 176 0.250234 GCAGTGTCAGCATGGAGGTA 59.750 55.000 0.00 0.00 36.16 3.08
176 177 1.741732 GCAGTGTCAGCATGGAGGTAG 60.742 57.143 0.00 0.00 36.16 3.18
177 178 1.827344 CAGTGTCAGCATGGAGGTAGA 59.173 52.381 0.00 0.00 36.16 2.59
178 179 2.106566 AGTGTCAGCATGGAGGTAGAG 58.893 52.381 0.00 0.00 36.16 2.43
179 180 2.103373 GTGTCAGCATGGAGGTAGAGA 58.897 52.381 0.00 0.00 36.16 3.10
180 181 2.497675 GTGTCAGCATGGAGGTAGAGAA 59.502 50.000 0.00 0.00 36.16 2.87
181 182 3.055819 GTGTCAGCATGGAGGTAGAGAAA 60.056 47.826 0.00 0.00 36.16 2.52
182 183 3.196469 TGTCAGCATGGAGGTAGAGAAAG 59.804 47.826 0.00 0.00 36.16 2.62
183 184 3.449018 GTCAGCATGGAGGTAGAGAAAGA 59.551 47.826 0.00 0.00 36.16 2.52
184 185 4.100808 GTCAGCATGGAGGTAGAGAAAGAT 59.899 45.833 0.00 0.00 36.16 2.40
185 186 4.100653 TCAGCATGGAGGTAGAGAAAGATG 59.899 45.833 0.00 0.00 36.16 2.90
186 187 3.137533 GCATGGAGGTAGAGAAAGATGC 58.862 50.000 0.00 0.00 0.00 3.91
187 188 3.388308 CATGGAGGTAGAGAAAGATGCG 58.612 50.000 0.00 0.00 0.00 4.73
188 189 2.735151 TGGAGGTAGAGAAAGATGCGA 58.265 47.619 0.00 0.00 0.00 5.10
189 190 2.427453 TGGAGGTAGAGAAAGATGCGAC 59.573 50.000 0.00 0.00 0.00 5.19
190 191 2.691011 GGAGGTAGAGAAAGATGCGACT 59.309 50.000 0.00 0.00 0.00 4.18
191 192 3.490078 GGAGGTAGAGAAAGATGCGACTG 60.490 52.174 0.00 0.00 0.00 3.51
192 193 2.159170 AGGTAGAGAAAGATGCGACTGC 60.159 50.000 0.00 0.00 43.20 4.40
202 203 3.181367 GCGACTGCACATGGGAAG 58.819 61.111 0.00 0.00 42.15 3.46
203 204 2.401766 GCGACTGCACATGGGAAGG 61.402 63.158 8.15 0.00 42.15 3.46
204 205 1.746615 CGACTGCACATGGGAAGGG 60.747 63.158 8.15 0.00 0.00 3.95
205 206 1.379044 GACTGCACATGGGAAGGGG 60.379 63.158 8.15 0.00 0.00 4.79
206 207 1.852157 ACTGCACATGGGAAGGGGA 60.852 57.895 8.15 0.00 0.00 4.81
207 208 1.217057 ACTGCACATGGGAAGGGGAT 61.217 55.000 8.15 0.00 0.00 3.85
208 209 0.754217 CTGCACATGGGAAGGGGATG 60.754 60.000 0.00 0.00 0.00 3.51
209 210 1.307647 GCACATGGGAAGGGGATGT 59.692 57.895 0.00 0.00 0.00 3.06
210 211 0.324645 GCACATGGGAAGGGGATGTT 60.325 55.000 0.00 0.00 0.00 2.71
211 212 1.896755 GCACATGGGAAGGGGATGTTT 60.897 52.381 0.00 0.00 0.00 2.83
212 213 2.622977 GCACATGGGAAGGGGATGTTTA 60.623 50.000 0.00 0.00 0.00 2.01
213 214 3.290710 CACATGGGAAGGGGATGTTTAG 58.709 50.000 0.00 0.00 0.00 1.85
214 215 2.310538 CATGGGAAGGGGATGTTTAGC 58.689 52.381 0.00 0.00 0.00 3.09
215 216 1.377690 TGGGAAGGGGATGTTTAGCA 58.622 50.000 0.00 0.00 0.00 3.49
216 217 1.284785 TGGGAAGGGGATGTTTAGCAG 59.715 52.381 0.00 0.00 0.00 4.24
217 218 1.393603 GGAAGGGGATGTTTAGCAGC 58.606 55.000 0.00 0.00 0.00 5.25
218 219 1.017387 GAAGGGGATGTTTAGCAGCG 58.983 55.000 0.00 0.00 33.59 5.18
219 220 0.618458 AAGGGGATGTTTAGCAGCGA 59.382 50.000 0.00 0.00 33.59 4.93
220 221 0.618458 AGGGGATGTTTAGCAGCGAA 59.382 50.000 0.00 0.00 33.59 4.70
221 222 0.733150 GGGGATGTTTAGCAGCGAAC 59.267 55.000 7.52 7.52 33.59 3.95
222 223 1.448985 GGGATGTTTAGCAGCGAACA 58.551 50.000 16.51 16.51 39.78 3.18
223 224 1.130561 GGGATGTTTAGCAGCGAACAC 59.869 52.381 16.52 11.57 38.46 3.32
224 225 1.804151 GGATGTTTAGCAGCGAACACA 59.196 47.619 16.52 11.00 38.46 3.72
225 226 2.420022 GGATGTTTAGCAGCGAACACAT 59.580 45.455 16.52 14.31 38.46 3.21
226 227 3.119849 GGATGTTTAGCAGCGAACACATT 60.120 43.478 16.52 4.78 38.46 2.71
227 228 3.980646 TGTTTAGCAGCGAACACATTT 57.019 38.095 11.86 0.00 31.30 2.32
228 229 3.884169 TGTTTAGCAGCGAACACATTTC 58.116 40.909 11.86 0.00 31.30 2.17
229 230 2.873170 TTAGCAGCGAACACATTTCG 57.127 45.000 2.06 2.06 44.06 3.46
230 231 1.075542 TAGCAGCGAACACATTTCGG 58.924 50.000 8.36 0.00 41.76 4.30
231 232 1.797537 GCAGCGAACACATTTCGGC 60.798 57.895 8.36 1.00 41.76 5.54
232 233 1.868997 CAGCGAACACATTTCGGCT 59.131 52.632 8.36 3.67 41.76 5.52
233 234 0.453282 CAGCGAACACATTTCGGCTG 60.453 55.000 8.36 10.99 41.76 4.85
234 235 1.797537 GCGAACACATTTCGGCTGC 60.798 57.895 8.36 0.00 41.76 5.25
235 236 1.868997 CGAACACATTTCGGCTGCT 59.131 52.632 0.00 0.00 38.19 4.24
236 237 0.179215 CGAACACATTTCGGCTGCTC 60.179 55.000 0.00 0.00 38.19 4.26
237 238 0.874390 GAACACATTTCGGCTGCTCA 59.126 50.000 0.00 0.00 0.00 4.26
238 239 1.266718 GAACACATTTCGGCTGCTCAA 59.733 47.619 0.00 0.00 0.00 3.02
239 240 1.317613 ACACATTTCGGCTGCTCAAA 58.682 45.000 0.00 0.00 0.00 2.69
240 241 1.680735 ACACATTTCGGCTGCTCAAAA 59.319 42.857 0.00 0.00 0.00 2.44
241 242 2.297033 ACACATTTCGGCTGCTCAAAAT 59.703 40.909 0.00 0.94 0.00 1.82
242 243 3.243839 ACACATTTCGGCTGCTCAAAATT 60.244 39.130 0.00 0.00 0.00 1.82
243 244 3.122278 CACATTTCGGCTGCTCAAAATTG 59.878 43.478 0.00 0.00 0.00 2.32
244 245 3.005684 ACATTTCGGCTGCTCAAAATTGA 59.994 39.130 0.00 0.00 35.57 2.57
254 255 2.995466 TCAAAATTGAGAAGCAGCCG 57.005 45.000 0.00 0.00 32.50 5.52
255 256 2.503331 TCAAAATTGAGAAGCAGCCGA 58.497 42.857 0.00 0.00 32.50 5.54
256 257 3.084039 TCAAAATTGAGAAGCAGCCGAT 58.916 40.909 0.00 0.00 32.50 4.18
257 258 3.119743 TCAAAATTGAGAAGCAGCCGATG 60.120 43.478 0.00 0.00 32.50 3.84
258 259 2.119801 AATTGAGAAGCAGCCGATGT 57.880 45.000 0.00 0.00 0.00 3.06
259 260 2.119801 ATTGAGAAGCAGCCGATGTT 57.880 45.000 0.00 0.00 0.00 2.71
260 261 1.896220 TTGAGAAGCAGCCGATGTTT 58.104 45.000 0.00 0.00 34.67 2.83
261 262 1.442769 TGAGAAGCAGCCGATGTTTC 58.557 50.000 5.18 5.18 46.37 2.78
263 264 3.984292 GAAGCAGCCGATGTTTCTG 57.016 52.632 6.03 0.00 43.61 3.02
264 265 1.442769 GAAGCAGCCGATGTTTCTGA 58.557 50.000 6.03 0.00 43.61 3.27
265 266 2.012673 GAAGCAGCCGATGTTTCTGAT 58.987 47.619 6.03 0.00 43.61 2.90
266 267 2.988010 AGCAGCCGATGTTTCTGATA 57.012 45.000 0.00 0.00 0.00 2.15
267 268 3.266510 AGCAGCCGATGTTTCTGATAA 57.733 42.857 0.00 0.00 0.00 1.75
268 269 3.609853 AGCAGCCGATGTTTCTGATAAA 58.390 40.909 0.00 0.00 0.00 1.40
269 270 4.009675 AGCAGCCGATGTTTCTGATAAAA 58.990 39.130 0.00 0.00 0.00 1.52
270 271 4.458989 AGCAGCCGATGTTTCTGATAAAAA 59.541 37.500 0.00 0.00 0.00 1.94
271 272 5.126061 AGCAGCCGATGTTTCTGATAAAAAT 59.874 36.000 0.00 0.00 0.00 1.82
272 273 5.807011 GCAGCCGATGTTTCTGATAAAAATT 59.193 36.000 0.00 0.00 0.00 1.82
273 274 6.311200 GCAGCCGATGTTTCTGATAAAAATTT 59.689 34.615 0.00 0.00 0.00 1.82
274 275 7.487829 GCAGCCGATGTTTCTGATAAAAATTTA 59.512 33.333 0.00 0.00 0.00 1.40
275 276 9.352784 CAGCCGATGTTTCTGATAAAAATTTAA 57.647 29.630 0.00 0.00 0.00 1.52
276 277 9.573133 AGCCGATGTTTCTGATAAAAATTTAAG 57.427 29.630 0.00 0.00 0.00 1.85
277 278 8.321005 GCCGATGTTTCTGATAAAAATTTAAGC 58.679 33.333 0.00 0.00 0.00 3.09
278 279 9.352784 CCGATGTTTCTGATAAAAATTTAAGCA 57.647 29.630 0.00 0.00 0.00 3.91
281 282 9.933723 ATGTTTCTGATAAAAATTTAAGCAGCT 57.066 25.926 11.81 0.00 33.17 4.24
296 297 8.996024 TTTAAGCAGCTAAACTTTTCAAAAGT 57.004 26.923 9.89 9.89 0.00 2.66
297 298 8.996024 TTAAGCAGCTAAACTTTTCAAAAGTT 57.004 26.923 20.53 20.53 41.82 2.66
298 299 7.525688 AAGCAGCTAAACTTTTCAAAAGTTC 57.474 32.000 25.10 14.72 39.36 3.01
299 300 6.630071 AGCAGCTAAACTTTTCAAAAGTTCA 58.370 32.000 25.10 12.91 39.36 3.18
300 301 6.753744 AGCAGCTAAACTTTTCAAAAGTTCAG 59.246 34.615 25.10 21.67 39.36 3.02
301 302 6.508563 GCAGCTAAACTTTTCAAAAGTTCAGC 60.509 38.462 31.69 31.69 46.74 4.26
304 305 8.274851 GCTAAACTTTTCAAAAGTTCAGCTAG 57.725 34.615 31.55 25.14 44.31 3.42
305 306 7.379797 GCTAAACTTTTCAAAAGTTCAGCTAGG 59.620 37.037 31.55 16.80 44.31 3.02
306 307 6.775594 AACTTTTCAAAAGTTCAGCTAGGT 57.224 33.333 20.53 0.00 35.76 3.08
307 308 7.875327 AACTTTTCAAAAGTTCAGCTAGGTA 57.125 32.000 20.53 0.00 35.76 3.08
308 309 8.465273 AACTTTTCAAAAGTTCAGCTAGGTAT 57.535 30.769 20.53 0.00 35.76 2.73
309 310 7.875971 ACTTTTCAAAAGTTCAGCTAGGTATG 58.124 34.615 9.89 0.00 0.00 2.39
310 311 7.719633 ACTTTTCAAAAGTTCAGCTAGGTATGA 59.280 33.333 9.89 0.00 0.00 2.15
311 312 8.635765 TTTTCAAAAGTTCAGCTAGGTATGAT 57.364 30.769 0.00 0.00 0.00 2.45
312 313 8.635765 TTTCAAAAGTTCAGCTAGGTATGATT 57.364 30.769 0.00 0.00 0.00 2.57
313 314 8.635765 TTCAAAAGTTCAGCTAGGTATGATTT 57.364 30.769 0.00 0.00 0.00 2.17
314 315 9.733556 TTCAAAAGTTCAGCTAGGTATGATTTA 57.266 29.630 0.00 0.00 0.00 1.40
315 316 9.733556 TCAAAAGTTCAGCTAGGTATGATTTAA 57.266 29.630 0.00 0.00 0.00 1.52
316 317 9.774742 CAAAAGTTCAGCTAGGTATGATTTAAC 57.225 33.333 0.00 0.00 0.00 2.01
317 318 9.740710 AAAAGTTCAGCTAGGTATGATTTAACT 57.259 29.630 0.00 0.00 0.00 2.24
318 319 8.950208 AAGTTCAGCTAGGTATGATTTAACTC 57.050 34.615 0.00 0.00 0.00 3.01
319 320 8.079211 AGTTCAGCTAGGTATGATTTAACTCA 57.921 34.615 0.00 0.00 0.00 3.41
320 321 8.540388 AGTTCAGCTAGGTATGATTTAACTCAA 58.460 33.333 0.00 0.00 0.00 3.02
321 322 9.162764 GTTCAGCTAGGTATGATTTAACTCAAA 57.837 33.333 0.00 0.00 0.00 2.69
322 323 8.948631 TCAGCTAGGTATGATTTAACTCAAAG 57.051 34.615 0.00 0.00 0.00 2.77
323 324 8.540388 TCAGCTAGGTATGATTTAACTCAAAGT 58.460 33.333 0.00 0.00 0.00 2.66
324 325 8.607459 CAGCTAGGTATGATTTAACTCAAAGTG 58.393 37.037 0.00 0.00 0.00 3.16
325 326 8.540388 AGCTAGGTATGATTTAACTCAAAGTGA 58.460 33.333 0.00 0.00 0.00 3.41
326 327 9.162764 GCTAGGTATGATTTAACTCAAAGTGAA 57.837 33.333 0.00 0.00 0.00 3.18
334 335 9.528018 TGATTTAACTCAAAGTGAAATGTTTCC 57.472 29.630 7.07 0.00 38.94 3.13
335 336 9.528018 GATTTAACTCAAAGTGAAATGTTTCCA 57.472 29.630 7.07 0.00 38.94 3.53
336 337 8.925161 TTTAACTCAAAGTGAAATGTTTCCAG 57.075 30.769 3.26 0.00 36.36 3.86
337 338 5.520376 ACTCAAAGTGAAATGTTTCCAGG 57.480 39.130 3.26 0.00 36.36 4.45
338 339 5.200483 ACTCAAAGTGAAATGTTTCCAGGA 58.800 37.500 3.26 0.00 36.36 3.86
339 340 5.300286 ACTCAAAGTGAAATGTTTCCAGGAG 59.700 40.000 3.26 5.89 36.36 3.69
340 341 5.200483 TCAAAGTGAAATGTTTCCAGGAGT 58.800 37.500 3.26 0.00 36.36 3.85
341 342 5.656416 TCAAAGTGAAATGTTTCCAGGAGTT 59.344 36.000 3.26 0.00 36.36 3.01
342 343 6.831353 TCAAAGTGAAATGTTTCCAGGAGTTA 59.169 34.615 3.26 0.00 36.36 2.24
343 344 7.505585 TCAAAGTGAAATGTTTCCAGGAGTTAT 59.494 33.333 3.26 0.00 36.36 1.89
344 345 6.824305 AGTGAAATGTTTCCAGGAGTTATG 57.176 37.500 3.26 0.00 36.36 1.90
345 346 6.542821 AGTGAAATGTTTCCAGGAGTTATGA 58.457 36.000 3.26 0.00 36.36 2.15
346 347 6.656693 AGTGAAATGTTTCCAGGAGTTATGAG 59.343 38.462 3.26 0.00 36.36 2.90
347 348 6.655003 GTGAAATGTTTCCAGGAGTTATGAGA 59.345 38.462 3.26 0.00 36.36 3.27
348 349 6.655003 TGAAATGTTTCCAGGAGTTATGAGAC 59.345 38.462 3.26 0.00 36.36 3.36
349 350 6.380079 AATGTTTCCAGGAGTTATGAGACT 57.620 37.500 0.00 0.00 0.00 3.24
350 351 5.825593 TGTTTCCAGGAGTTATGAGACTT 57.174 39.130 0.00 0.00 0.00 3.01
351 352 6.187727 TGTTTCCAGGAGTTATGAGACTTT 57.812 37.500 0.00 0.00 0.00 2.66
352 353 5.997746 TGTTTCCAGGAGTTATGAGACTTTG 59.002 40.000 0.00 0.00 0.00 2.77
353 354 4.826274 TCCAGGAGTTATGAGACTTTGG 57.174 45.455 0.00 0.00 36.66 3.28
354 355 3.055094 TCCAGGAGTTATGAGACTTTGGC 60.055 47.826 0.00 0.00 35.94 4.52
355 356 3.054802 CCAGGAGTTATGAGACTTTGGCT 60.055 47.826 0.00 0.00 32.00 4.75
356 357 4.162320 CCAGGAGTTATGAGACTTTGGCTA 59.838 45.833 0.00 0.00 32.00 3.93
357 358 5.355596 CAGGAGTTATGAGACTTTGGCTAG 58.644 45.833 0.00 0.00 0.00 3.42
358 359 5.127845 CAGGAGTTATGAGACTTTGGCTAGA 59.872 44.000 0.00 0.00 0.00 2.43
359 360 5.902431 AGGAGTTATGAGACTTTGGCTAGAT 59.098 40.000 0.00 0.00 0.00 1.98
360 361 7.014711 CAGGAGTTATGAGACTTTGGCTAGATA 59.985 40.741 0.00 0.00 0.00 1.98
361 362 7.732593 AGGAGTTATGAGACTTTGGCTAGATAT 59.267 37.037 0.00 0.00 0.00 1.63
362 363 9.026121 GGAGTTATGAGACTTTGGCTAGATATA 57.974 37.037 0.00 0.00 0.00 0.86
365 366 9.092876 GTTATGAGACTTTGGCTAGATATATGC 57.907 37.037 0.00 0.00 0.00 3.14
366 367 6.924913 TGAGACTTTGGCTAGATATATGCT 57.075 37.500 0.00 0.00 0.00 3.79
367 368 6.695429 TGAGACTTTGGCTAGATATATGCTG 58.305 40.000 0.00 0.00 0.00 4.41
368 369 6.268617 TGAGACTTTGGCTAGATATATGCTGT 59.731 38.462 0.00 0.00 0.00 4.40
369 370 7.451566 TGAGACTTTGGCTAGATATATGCTGTA 59.548 37.037 0.00 0.00 0.00 2.74
370 371 7.835822 AGACTTTGGCTAGATATATGCTGTAG 58.164 38.462 0.00 0.00 0.00 2.74
371 372 7.671819 AGACTTTGGCTAGATATATGCTGTAGA 59.328 37.037 0.00 0.00 0.00 2.59
372 373 8.195165 ACTTTGGCTAGATATATGCTGTAGAA 57.805 34.615 0.00 0.00 0.00 2.10
373 374 8.310382 ACTTTGGCTAGATATATGCTGTAGAAG 58.690 37.037 0.00 0.00 0.00 2.85
374 375 7.782897 TTGGCTAGATATATGCTGTAGAAGT 57.217 36.000 0.00 0.00 0.00 3.01
375 376 7.163001 TGGCTAGATATATGCTGTAGAAGTG 57.837 40.000 0.00 0.00 0.00 3.16
376 377 6.039616 GGCTAGATATATGCTGTAGAAGTGC 58.960 44.000 0.00 0.00 0.00 4.40
377 378 6.039616 GCTAGATATATGCTGTAGAAGTGCC 58.960 44.000 0.00 0.00 0.00 5.01
378 379 5.065704 AGATATATGCTGTAGAAGTGCCG 57.934 43.478 0.00 0.00 0.00 5.69
379 380 1.871080 ATATGCTGTAGAAGTGCCGC 58.129 50.000 0.00 0.00 0.00 6.53
380 381 0.527600 TATGCTGTAGAAGTGCCGCG 60.528 55.000 0.00 0.00 0.00 6.46
381 382 2.432628 GCTGTAGAAGTGCCGCGT 60.433 61.111 4.92 0.00 0.00 6.01
382 383 2.445438 GCTGTAGAAGTGCCGCGTC 61.445 63.158 4.92 0.00 0.00 5.19
383 384 1.080772 CTGTAGAAGTGCCGCGTCA 60.081 57.895 4.92 0.00 0.00 4.35
384 385 0.458543 CTGTAGAAGTGCCGCGTCAT 60.459 55.000 4.92 0.00 0.00 3.06
385 386 0.735978 TGTAGAAGTGCCGCGTCATG 60.736 55.000 4.92 0.00 0.00 3.07
386 387 1.809619 TAGAAGTGCCGCGTCATGC 60.810 57.895 4.92 0.82 41.47 4.06
387 388 4.166011 GAAGTGCCGCGTCATGCC 62.166 66.667 4.92 0.00 42.08 4.40
389 390 4.783621 AGTGCCGCGTCATGCCAT 62.784 61.111 4.92 0.00 42.08 4.40
390 391 4.541482 GTGCCGCGTCATGCCATG 62.541 66.667 4.92 0.00 42.08 3.66
392 393 2.894879 GCCGCGTCATGCCATGTA 60.895 61.111 4.92 0.00 42.08 2.29
393 394 3.014036 CCGCGTCATGCCATGTAC 58.986 61.111 4.92 1.31 42.08 2.90
394 395 1.521457 CCGCGTCATGCCATGTACT 60.521 57.895 4.92 0.00 42.08 2.73
395 396 1.490693 CCGCGTCATGCCATGTACTC 61.491 60.000 4.92 0.00 42.08 2.59
396 397 1.490693 CGCGTCATGCCATGTACTCC 61.491 60.000 4.31 0.00 42.08 3.85
397 398 1.160329 GCGTCATGCCATGTACTCCC 61.160 60.000 4.31 0.00 37.76 4.30
398 399 0.465705 CGTCATGCCATGTACTCCCT 59.534 55.000 4.31 0.00 0.00 4.20
399 400 1.539065 CGTCATGCCATGTACTCCCTC 60.539 57.143 4.31 0.00 0.00 4.30
400 401 1.765314 GTCATGCCATGTACTCCCTCT 59.235 52.381 4.31 0.00 0.00 3.69
401 402 1.764723 TCATGCCATGTACTCCCTCTG 59.235 52.381 4.31 0.00 0.00 3.35
402 403 1.487976 CATGCCATGTACTCCCTCTGT 59.512 52.381 0.00 0.00 0.00 3.41
403 404 1.195115 TGCCATGTACTCCCTCTGTC 58.805 55.000 0.00 0.00 0.00 3.51
404 405 0.466124 GCCATGTACTCCCTCTGTCC 59.534 60.000 0.00 0.00 0.00 4.02
405 406 1.967274 GCCATGTACTCCCTCTGTCCT 60.967 57.143 0.00 0.00 0.00 3.85
406 407 2.690026 GCCATGTACTCCCTCTGTCCTA 60.690 54.545 0.00 0.00 0.00 2.94
407 408 3.643237 CCATGTACTCCCTCTGTCCTAA 58.357 50.000 0.00 0.00 0.00 2.69
408 409 4.030913 CCATGTACTCCCTCTGTCCTAAA 58.969 47.826 0.00 0.00 0.00 1.85
409 410 4.469945 CCATGTACTCCCTCTGTCCTAAAA 59.530 45.833 0.00 0.00 0.00 1.52
410 411 5.131142 CCATGTACTCCCTCTGTCCTAAAAT 59.869 44.000 0.00 0.00 0.00 1.82
411 412 6.326583 CCATGTACTCCCTCTGTCCTAAAATA 59.673 42.308 0.00 0.00 0.00 1.40
412 413 7.147549 CCATGTACTCCCTCTGTCCTAAAATAA 60.148 40.741 0.00 0.00 0.00 1.40
413 414 7.801893 TGTACTCCCTCTGTCCTAAAATAAA 57.198 36.000 0.00 0.00 0.00 1.40
414 415 8.388656 TGTACTCCCTCTGTCCTAAAATAAAT 57.611 34.615 0.00 0.00 0.00 1.40
415 416 8.265055 TGTACTCCCTCTGTCCTAAAATAAATG 58.735 37.037 0.00 0.00 0.00 2.32
416 417 7.272144 ACTCCCTCTGTCCTAAAATAAATGT 57.728 36.000 0.00 0.00 0.00 2.71
417 418 7.699878 ACTCCCTCTGTCCTAAAATAAATGTT 58.300 34.615 0.00 0.00 0.00 2.71
418 419 8.170730 ACTCCCTCTGTCCTAAAATAAATGTTT 58.829 33.333 0.00 0.00 0.00 2.83
419 420 8.950007 TCCCTCTGTCCTAAAATAAATGTTTT 57.050 30.769 0.00 0.00 35.60 2.43
526 528 8.747538 AAATTAGTACAAAGGAAGACACTTGT 57.252 30.769 0.00 0.00 0.00 3.16
527 529 8.747538 AATTAGTACAAAGGAAGACACTTGTT 57.252 30.769 0.00 0.00 0.00 2.83
536 547 5.741011 AGGAAGACACTTGTTTGTGACTTA 58.259 37.500 10.96 0.00 46.63 2.24
586 601 1.300963 GCATGGCTCCAAGAGTCCA 59.699 57.895 9.25 9.25 39.05 4.02
662 679 6.809196 ACGTTTACTTTGAAAAGCATGACAAA 59.191 30.769 0.00 0.00 39.63 2.83
671 688 7.176285 TGAAAAGCATGACAAAACAATAAGC 57.824 32.000 0.00 0.00 0.00 3.09
739 756 5.163055 TGCTTTTATGATATCTTCCCTGCCT 60.163 40.000 3.98 0.00 0.00 4.75
744 761 2.702478 TGATATCTTCCCTGCCTGACAG 59.298 50.000 3.98 0.00 46.77 3.51
774 791 2.697751 CCCACAACACATTTCTTCCCAA 59.302 45.455 0.00 0.00 0.00 4.12
847 866 1.067212 GTAGATCGTTCCGTGCCATCT 59.933 52.381 0.00 0.00 0.00 2.90
863 882 2.103941 CCATCTAGCCCAAAGGTCTCTC 59.896 54.545 0.00 0.00 34.57 3.20
911 2403 3.953775 ACCCACTTCACCCTGCCG 61.954 66.667 0.00 0.00 0.00 5.69
919 2411 3.390521 CACCCTGCCGGTCTGCTA 61.391 66.667 1.90 0.00 43.58 3.49
920 2412 3.391382 ACCCTGCCGGTCTGCTAC 61.391 66.667 1.90 0.00 43.58 3.58
921 2413 3.077556 CCCTGCCGGTCTGCTACT 61.078 66.667 1.90 0.00 0.00 2.57
922 2414 2.185350 CCTGCCGGTCTGCTACTG 59.815 66.667 1.90 0.00 0.00 2.74
948 2440 6.313905 GGTACTGGCATTATATAGACACATGC 59.686 42.308 7.52 7.52 39.67 4.06
952 2444 5.208624 GCATTATATAGACACATGCCACG 57.791 43.478 5.39 0.00 35.24 4.94
953 2445 4.093408 GCATTATATAGACACATGCCACGG 59.907 45.833 5.39 0.00 35.24 4.94
954 2446 5.478407 CATTATATAGACACATGCCACGGA 58.522 41.667 0.00 0.00 0.00 4.69
982 2474 0.267356 CCTTGATCCTCCTCCTCCCT 59.733 60.000 0.00 0.00 0.00 4.20
1045 2537 1.521616 CTGCTCCTCTGCCTCCTTC 59.478 63.158 0.00 0.00 0.00 3.46
1176 2680 2.968574 TCTCTCACTCACCAGCTTCTTT 59.031 45.455 0.00 0.00 0.00 2.52
1309 2813 4.373116 CCTCCCACACCACCGACG 62.373 72.222 0.00 0.00 0.00 5.12
1381 2891 3.528370 CCTACCGGAGCCGTGGAG 61.528 72.222 9.46 5.54 37.81 3.86
1452 2962 1.210538 TCTACTCCTCCGCCTCACTA 58.789 55.000 0.00 0.00 0.00 2.74
1458 2968 1.187087 CCTCCGCCTCACTAGAACTT 58.813 55.000 0.00 0.00 0.00 2.66
1570 3080 0.687757 CTCCCTCACCGATCCCTTCA 60.688 60.000 0.00 0.00 0.00 3.02
1585 3095 1.471676 CCTTCATGACCGGCAGTCTAC 60.472 57.143 0.00 0.00 46.46 2.59
1710 3223 1.305802 TGCCAGGGACTCGTACCAT 60.306 57.895 0.37 0.00 34.60 3.55
1758 3277 2.414559 CGCCCATCTTAAACAACAGCTG 60.415 50.000 13.48 13.48 0.00 4.24
1834 3362 1.151221 AACCAGATGCAGTGCACCA 59.849 52.632 22.44 5.64 43.04 4.17
2142 3679 1.610624 GGGATGCTTTGGAACTCGACA 60.611 52.381 0.00 0.00 0.00 4.35
2281 3818 0.992072 CAGCTACAACGACACGATGG 59.008 55.000 0.00 0.00 34.07 3.51
2385 3931 0.938168 ACCGTGACTTCGAGTTTCGC 60.938 55.000 0.00 0.00 40.21 4.70
2389 3935 2.124903 GTGACTTCGAGTTTCGCTTCA 58.875 47.619 0.00 0.00 40.21 3.02
2393 3939 1.986378 CTTCGAGTTTCGCTTCATCGT 59.014 47.619 0.00 0.00 40.21 3.73
2396 3942 0.790207 GAGTTTCGCTTCATCGTGCA 59.210 50.000 0.00 0.00 0.00 4.57
2433 3985 1.963515 GAAGCCAACCCAGTCACAATT 59.036 47.619 0.00 0.00 0.00 2.32
2492 4050 0.465278 GATTCCTTCTCCCAGGCTGC 60.465 60.000 9.56 0.00 33.35 5.25
2494 4052 3.393970 CCTTCTCCCAGGCTGCGA 61.394 66.667 9.56 5.14 0.00 5.10
2571 4132 3.443045 CCTGATGGTTGGGTGCGC 61.443 66.667 0.00 0.00 0.00 6.09
2590 4151 1.483415 GCCCTAAGAATGGGTCGTACA 59.517 52.381 0.00 0.00 46.22 2.90
2591 4152 2.483188 GCCCTAAGAATGGGTCGTACAG 60.483 54.545 0.00 0.00 46.22 2.74
2603 4164 4.580167 TGGGTCGTACAGGTATACACATAC 59.420 45.833 5.01 2.86 36.97 2.39
2655 4222 1.412710 GGCGTGTATGATCCCAAGAGA 59.587 52.381 0.00 0.00 0.00 3.10
2662 4229 2.187239 TGATCCCAAGAGAGGCATCT 57.813 50.000 0.00 0.00 38.98 2.90
2703 4270 1.945354 ATCACAACGGCTCGACGGAT 61.945 55.000 0.00 0.00 38.39 4.18
2736 4303 0.963962 TAACCGTGAAGTTCGCCTCT 59.036 50.000 10.76 0.00 0.00 3.69
2739 4306 0.734253 CCGTGAAGTTCGCCTCTCTG 60.734 60.000 10.76 0.00 0.00 3.35
2740 4307 1.347817 CGTGAAGTTCGCCTCTCTGC 61.348 60.000 10.76 0.00 0.00 4.26
2741 4308 0.037790 GTGAAGTTCGCCTCTCTGCT 60.038 55.000 5.03 0.00 0.00 4.24
2742 4309 0.037882 TGAAGTTCGCCTCTCTGCTG 60.038 55.000 0.00 0.00 0.00 4.41
2743 4310 1.357991 GAAGTTCGCCTCTCTGCTGC 61.358 60.000 0.00 0.00 0.00 5.25
2822 4389 4.029640 CGATCGTCTTTTCTTCGACAAGAG 59.970 45.833 7.03 0.00 39.90 2.85
2831 4398 2.164422 TCTTCGACAAGAGCGACATCAT 59.836 45.455 0.00 0.00 37.52 2.45
3007 4574 1.563435 GATCACCATGCTCGCCATCG 61.563 60.000 0.00 0.00 29.71 3.84
3049 4616 0.666374 TCTCGTGCTCAACTTCGACA 59.334 50.000 0.00 0.00 0.00 4.35
3059 4626 2.104111 TCAACTTCGACACCCTGTTCAT 59.896 45.455 0.00 0.00 0.00 2.57
3417 4993 0.316772 CGTACGGCGGTCTGATACTG 60.317 60.000 13.24 0.00 37.55 2.74
3418 4994 0.030369 GTACGGCGGTCTGATACTGG 59.970 60.000 13.24 0.00 34.76 4.00
3437 5013 4.475135 GACGGCTTCCTGCTCCCC 62.475 72.222 0.00 0.00 42.39 4.81
3749 5325 2.118679 TCAGGTGGGTATGAGATGGTG 58.881 52.381 0.00 0.00 0.00 4.17
3754 5330 1.837439 TGGGTATGAGATGGTGTCCAC 59.163 52.381 0.00 0.00 35.80 4.02
3842 5418 4.053295 CAATGTGCTGGTTCCAAGAAAAG 58.947 43.478 0.00 0.00 0.00 2.27
3848 5424 5.938125 GTGCTGGTTCCAAGAAAAGAGTATA 59.062 40.000 0.00 0.00 0.00 1.47
3849 5425 6.599638 GTGCTGGTTCCAAGAAAAGAGTATAT 59.400 38.462 0.00 0.00 0.00 0.86
3925 5522 9.988815 AGTCTTGCTAAATATCAGTCGATTTAT 57.011 29.630 0.00 0.00 32.73 1.40
3972 5569 8.110612 CGATGTTATGTTCACAAGATCTTACAC 58.889 37.037 7.86 3.39 0.00 2.90
4067 5664 3.326880 ACTTGGTTAAGTCCCAGTCGATT 59.673 43.478 0.00 0.00 43.53 3.34
4068 5665 3.328382 TGGTTAAGTCCCAGTCGATTG 57.672 47.619 0.04 0.04 0.00 2.67
4069 5666 2.901192 TGGTTAAGTCCCAGTCGATTGA 59.099 45.455 9.83 0.00 0.00 2.57
4070 5667 3.056107 TGGTTAAGTCCCAGTCGATTGAG 60.056 47.826 9.83 0.00 0.00 3.02
4071 5668 3.194968 GGTTAAGTCCCAGTCGATTGAGA 59.805 47.826 9.83 0.00 0.00 3.27
4072 5669 4.174762 GTTAAGTCCCAGTCGATTGAGAC 58.825 47.826 13.63 13.63 41.23 3.36
4105 5702 4.571919 ACGGGTCAATCGACTGAAATAAA 58.428 39.130 0.00 0.00 42.21 1.40
4111 5708 8.508875 GGGTCAATCGACTGAAATAAAGTTTTA 58.491 33.333 0.00 0.00 42.21 1.52
4116 5713 7.662604 TCGACTGAAATAAAGTTTTAGGTCC 57.337 36.000 0.00 0.00 0.00 4.46
4139 5736 5.293324 CCGTCGATTGACCTTGAATCATTTA 59.707 40.000 7.54 0.00 42.37 1.40
4197 5794 1.250328 CATTCCGGCCATGCATGTAT 58.750 50.000 24.58 6.00 0.00 2.29
4208 6063 6.180472 GGCCATGCATGTATTAGGTAAGTAT 58.820 40.000 24.58 0.00 0.00 2.12
4272 6127 7.997773 ATTATAGGTGTATAAGAGAGCGTCA 57.002 36.000 0.00 0.00 35.10 4.35
4273 6128 7.997773 TTATAGGTGTATAAGAGAGCGTCAT 57.002 36.000 0.00 0.00 29.34 3.06
4274 6129 6.902771 ATAGGTGTATAAGAGAGCGTCATT 57.097 37.500 0.00 0.00 0.00 2.57
4365 6220 1.394917 GAAGATCGTGCATGGTGTGTC 59.605 52.381 5.98 0.00 0.00 3.67
4410 6265 8.005192 TGCATGCAAAGGTTTGTGATTATATA 57.995 30.769 20.30 0.00 40.24 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.323629 GGACCATCGTGGAGTTTCCA 59.676 55.000 10.46 0.00 45.98 3.53
3 4 0.613777 AGGACCATCGTGGAGTTTCC 59.386 55.000 10.46 7.04 40.96 3.13
4 5 1.405661 GGAGGACCATCGTGGAGTTTC 60.406 57.143 10.46 0.00 40.96 2.78
5 6 0.613777 GGAGGACCATCGTGGAGTTT 59.386 55.000 10.46 0.00 40.96 2.66
6 7 0.252284 AGGAGGACCATCGTGGAGTT 60.252 55.000 10.46 0.00 40.96 3.01
7 8 0.252284 AAGGAGGACCATCGTGGAGT 60.252 55.000 10.46 0.00 40.96 3.85
8 9 0.176680 CAAGGAGGACCATCGTGGAG 59.823 60.000 10.46 0.00 40.96 3.86
9 10 0.544357 ACAAGGAGGACCATCGTGGA 60.544 55.000 10.46 0.00 40.96 4.02
10 11 0.108138 GACAAGGAGGACCATCGTGG 60.108 60.000 0.00 2.92 45.02 4.94
11 12 0.458543 CGACAAGGAGGACCATCGTG 60.459 60.000 0.00 0.00 38.94 4.35
12 13 0.611062 TCGACAAGGAGGACCATCGT 60.611 55.000 0.00 0.00 38.51 3.73
13 14 0.179134 GTCGACAAGGAGGACCATCG 60.179 60.000 11.55 0.00 38.63 3.84
14 15 0.179134 CGTCGACAAGGAGGACCATC 60.179 60.000 17.16 0.00 38.94 3.51
15 16 0.611062 TCGTCGACAAGGAGGACCAT 60.611 55.000 17.16 0.00 38.94 3.55
16 17 1.228337 TCGTCGACAAGGAGGACCA 60.228 57.895 17.16 0.00 38.94 4.02
17 18 1.507174 CTCGTCGACAAGGAGGACC 59.493 63.158 17.16 0.00 36.45 4.46
18 19 1.153997 GCTCGTCGACAAGGAGGAC 60.154 63.158 17.16 0.00 39.73 3.85
19 20 0.894184 AAGCTCGTCGACAAGGAGGA 60.894 55.000 17.16 2.29 39.73 3.71
20 21 0.734253 CAAGCTCGTCGACAAGGAGG 60.734 60.000 17.16 0.00 39.73 4.30
21 22 1.347817 GCAAGCTCGTCGACAAGGAG 61.348 60.000 17.16 14.68 41.79 3.69
22 23 1.372997 GCAAGCTCGTCGACAAGGA 60.373 57.895 17.16 3.84 0.00 3.36
23 24 1.221466 TTGCAAGCTCGTCGACAAGG 61.221 55.000 17.16 5.73 0.00 3.61
24 25 0.792640 ATTGCAAGCTCGTCGACAAG 59.207 50.000 17.16 7.95 0.00 3.16
25 26 1.992667 CTATTGCAAGCTCGTCGACAA 59.007 47.619 17.16 0.00 0.00 3.18
26 27 1.629013 CTATTGCAAGCTCGTCGACA 58.371 50.000 17.16 1.87 0.00 4.35
27 28 0.299003 GCTATTGCAAGCTCGTCGAC 59.701 55.000 5.18 5.18 39.50 4.20
28 29 2.665777 GCTATTGCAAGCTCGTCGA 58.334 52.632 4.94 0.00 39.50 4.20
35 36 3.060003 CGACACATCTAGCTATTGCAAGC 60.060 47.826 4.94 3.33 42.74 4.01
36 37 4.363138 TCGACACATCTAGCTATTGCAAG 58.637 43.478 4.94 0.00 42.74 4.01
37 38 4.385358 TCGACACATCTAGCTATTGCAA 57.615 40.909 0.00 0.00 42.74 4.08
38 39 4.590850 ATCGACACATCTAGCTATTGCA 57.409 40.909 1.12 0.00 42.74 4.08
39 40 4.387256 GGAATCGACACATCTAGCTATTGC 59.613 45.833 0.00 0.00 40.05 3.56
40 41 5.532557 TGGAATCGACACATCTAGCTATTG 58.467 41.667 0.00 0.00 0.00 1.90
41 42 5.777802 CTGGAATCGACACATCTAGCTATT 58.222 41.667 0.00 0.00 0.00 1.73
42 43 4.321601 GCTGGAATCGACACATCTAGCTAT 60.322 45.833 15.65 0.00 42.38 2.97
43 44 3.004839 GCTGGAATCGACACATCTAGCTA 59.995 47.826 15.65 0.00 42.38 3.32
44 45 2.223923 GCTGGAATCGACACATCTAGCT 60.224 50.000 15.65 0.00 42.38 3.32
45 46 2.131183 GCTGGAATCGACACATCTAGC 58.869 52.381 10.41 10.41 39.85 3.42
46 47 2.389059 CGCTGGAATCGACACATCTAG 58.611 52.381 0.00 0.00 0.00 2.43
47 48 1.067060 CCGCTGGAATCGACACATCTA 59.933 52.381 0.00 0.00 0.00 1.98
48 49 0.179100 CCGCTGGAATCGACACATCT 60.179 55.000 0.00 0.00 0.00 2.90
49 50 1.766143 GCCGCTGGAATCGACACATC 61.766 60.000 0.00 0.00 0.00 3.06
50 51 1.815421 GCCGCTGGAATCGACACAT 60.815 57.895 0.00 0.00 0.00 3.21
51 52 1.600511 TAGCCGCTGGAATCGACACA 61.601 55.000 2.16 0.00 0.00 3.72
52 53 0.459585 TTAGCCGCTGGAATCGACAC 60.460 55.000 2.16 0.00 0.00 3.67
53 54 0.179111 CTTAGCCGCTGGAATCGACA 60.179 55.000 2.16 0.00 0.00 4.35
54 55 0.876342 CCTTAGCCGCTGGAATCGAC 60.876 60.000 2.16 0.00 0.00 4.20
55 56 1.040893 TCCTTAGCCGCTGGAATCGA 61.041 55.000 2.16 0.00 0.00 3.59
56 57 0.179084 TTCCTTAGCCGCTGGAATCG 60.179 55.000 7.88 0.00 35.23 3.34
57 58 1.300481 GTTCCTTAGCCGCTGGAATC 58.700 55.000 13.71 6.09 41.23 2.52
58 59 0.618458 TGTTCCTTAGCCGCTGGAAT 59.382 50.000 13.71 0.00 41.23 3.01
59 60 0.398696 TTGTTCCTTAGCCGCTGGAA 59.601 50.000 7.88 7.88 37.51 3.53
60 61 0.398696 TTTGTTCCTTAGCCGCTGGA 59.601 50.000 2.16 0.00 0.00 3.86
61 62 1.401905 GATTTGTTCCTTAGCCGCTGG 59.598 52.381 2.16 0.00 0.00 4.85
62 63 2.083774 TGATTTGTTCCTTAGCCGCTG 58.916 47.619 2.16 0.00 0.00 5.18
63 64 2.489938 TGATTTGTTCCTTAGCCGCT 57.510 45.000 0.00 0.00 0.00 5.52
64 65 3.057526 ACTTTGATTTGTTCCTTAGCCGC 60.058 43.478 0.00 0.00 0.00 6.53
65 66 4.766404 ACTTTGATTTGTTCCTTAGCCG 57.234 40.909 0.00 0.00 0.00 5.52
66 67 5.230182 CCAACTTTGATTTGTTCCTTAGCC 58.770 41.667 0.00 0.00 0.00 3.93
67 68 5.230182 CCCAACTTTGATTTGTTCCTTAGC 58.770 41.667 0.00 0.00 0.00 3.09
68 69 5.230182 GCCCAACTTTGATTTGTTCCTTAG 58.770 41.667 0.00 0.00 0.00 2.18
69 70 4.261825 CGCCCAACTTTGATTTGTTCCTTA 60.262 41.667 0.00 0.00 0.00 2.69
70 71 3.492482 CGCCCAACTTTGATTTGTTCCTT 60.492 43.478 0.00 0.00 0.00 3.36
71 72 2.035832 CGCCCAACTTTGATTTGTTCCT 59.964 45.455 0.00 0.00 0.00 3.36
72 73 2.403259 CGCCCAACTTTGATTTGTTCC 58.597 47.619 0.00 0.00 0.00 3.62
73 74 2.403259 CCGCCCAACTTTGATTTGTTC 58.597 47.619 0.00 0.00 0.00 3.18
74 75 1.069978 CCCGCCCAACTTTGATTTGTT 59.930 47.619 0.00 0.00 0.00 2.83
75 76 0.678950 CCCGCCCAACTTTGATTTGT 59.321 50.000 0.00 0.00 0.00 2.83
76 77 0.965439 TCCCGCCCAACTTTGATTTG 59.035 50.000 0.00 0.00 0.00 2.32
77 78 1.256812 CTCCCGCCCAACTTTGATTT 58.743 50.000 0.00 0.00 0.00 2.17
78 79 0.611896 CCTCCCGCCCAACTTTGATT 60.612 55.000 0.00 0.00 0.00 2.57
79 80 1.000896 CCTCCCGCCCAACTTTGAT 60.001 57.895 0.00 0.00 0.00 2.57
80 81 1.128809 TACCTCCCGCCCAACTTTGA 61.129 55.000 0.00 0.00 0.00 2.69
81 82 0.676782 CTACCTCCCGCCCAACTTTG 60.677 60.000 0.00 0.00 0.00 2.77
82 83 1.683441 CTACCTCCCGCCCAACTTT 59.317 57.895 0.00 0.00 0.00 2.66
83 84 2.298661 CCTACCTCCCGCCCAACTT 61.299 63.158 0.00 0.00 0.00 2.66
84 85 2.687566 CCTACCTCCCGCCCAACT 60.688 66.667 0.00 0.00 0.00 3.16
85 86 3.007323 ACCTACCTCCCGCCCAAC 61.007 66.667 0.00 0.00 0.00 3.77
86 87 3.006728 CACCTACCTCCCGCCCAA 61.007 66.667 0.00 0.00 0.00 4.12
87 88 4.326227 ACACCTACCTCCCGCCCA 62.326 66.667 0.00 0.00 0.00 5.36
88 89 3.782443 CACACCTACCTCCCGCCC 61.782 72.222 0.00 0.00 0.00 6.13
89 90 3.782443 CCACACCTACCTCCCGCC 61.782 72.222 0.00 0.00 0.00 6.13
90 91 2.682494 TCCACACCTACCTCCCGC 60.682 66.667 0.00 0.00 0.00 6.13
91 92 1.305046 AGTCCACACCTACCTCCCG 60.305 63.158 0.00 0.00 0.00 5.14
92 93 0.544595 ACAGTCCACACCTACCTCCC 60.545 60.000 0.00 0.00 0.00 4.30
93 94 0.608640 CACAGTCCACACCTACCTCC 59.391 60.000 0.00 0.00 0.00 4.30
94 95 0.608640 CCACAGTCCACACCTACCTC 59.391 60.000 0.00 0.00 0.00 3.85
95 96 0.836400 CCCACAGTCCACACCTACCT 60.836 60.000 0.00 0.00 0.00 3.08
96 97 1.677552 CCCACAGTCCACACCTACC 59.322 63.158 0.00 0.00 0.00 3.18
97 98 0.834687 TCCCCACAGTCCACACCTAC 60.835 60.000 0.00 0.00 0.00 3.18
98 99 0.104882 TTCCCCACAGTCCACACCTA 60.105 55.000 0.00 0.00 0.00 3.08
99 100 1.385347 TTCCCCACAGTCCACACCT 60.385 57.895 0.00 0.00 0.00 4.00
100 101 1.228154 GTTCCCCACAGTCCACACC 60.228 63.158 0.00 0.00 0.00 4.16
101 102 1.228154 GGTTCCCCACAGTCCACAC 60.228 63.158 0.00 0.00 0.00 3.82
102 103 2.813726 CGGTTCCCCACAGTCCACA 61.814 63.158 0.00 0.00 0.00 4.17
103 104 2.032071 CGGTTCCCCACAGTCCAC 59.968 66.667 0.00 0.00 0.00 4.02
104 105 3.246112 CCGGTTCCCCACAGTCCA 61.246 66.667 0.00 0.00 0.00 4.02
105 106 4.717313 GCCGGTTCCCCACAGTCC 62.717 72.222 1.90 0.00 0.00 3.85
108 109 4.760047 CTCGCCGGTTCCCCACAG 62.760 72.222 1.90 0.00 0.00 3.66
110 111 4.452733 CTCTCGCCGGTTCCCCAC 62.453 72.222 1.90 0.00 0.00 4.61
111 112 4.689549 TCTCTCGCCGGTTCCCCA 62.690 66.667 1.90 0.00 0.00 4.96
112 113 3.839432 CTCTCTCGCCGGTTCCCC 61.839 72.222 1.90 0.00 0.00 4.81
113 114 2.754658 TCTCTCTCGCCGGTTCCC 60.755 66.667 1.90 0.00 0.00 3.97
114 115 2.802106 CTCTCTCTCGCCGGTTCC 59.198 66.667 1.90 0.00 0.00 3.62
115 116 2.103340 GCTCTCTCTCGCCGGTTC 59.897 66.667 1.90 0.00 0.00 3.62
116 117 2.676822 TGCTCTCTCTCGCCGGTT 60.677 61.111 1.90 0.00 0.00 4.44
117 118 3.137459 CTGCTCTCTCTCGCCGGT 61.137 66.667 1.90 0.00 0.00 5.28
118 119 3.119709 GACTGCTCTCTCTCGCCGG 62.120 68.421 0.00 0.00 0.00 6.13
119 120 2.407210 GACTGCTCTCTCTCGCCG 59.593 66.667 0.00 0.00 0.00 6.46
120 121 2.407210 CGACTGCTCTCTCTCGCC 59.593 66.667 0.00 0.00 0.00 5.54
121 122 2.277884 GCGACTGCTCTCTCTCGC 60.278 66.667 0.00 0.00 44.11 5.03
122 123 2.407210 GGCGACTGCTCTCTCTCG 59.593 66.667 0.00 0.00 42.25 4.04
123 124 2.407210 CGGCGACTGCTCTCTCTC 59.593 66.667 0.00 0.00 42.25 3.20
124 125 3.821055 GCGGCGACTGCTCTCTCT 61.821 66.667 12.98 0.00 42.25 3.10
125 126 4.863925 GGCGGCGACTGCTCTCTC 62.864 72.222 12.98 0.00 42.25 3.20
127 128 4.742201 TTGGCGGCGACTGCTCTC 62.742 66.667 16.45 0.00 42.25 3.20
128 129 4.314440 TTTGGCGGCGACTGCTCT 62.314 61.111 16.45 0.00 42.25 4.09
129 130 3.793144 CTTTGGCGGCGACTGCTC 61.793 66.667 16.45 0.00 42.25 4.26
148 149 0.533531 TGCTGACACTGCACTCCTTG 60.534 55.000 0.00 0.00 33.63 3.61
149 150 0.399454 ATGCTGACACTGCACTCCTT 59.601 50.000 5.56 0.00 40.77 3.36
150 151 0.321387 CATGCTGACACTGCACTCCT 60.321 55.000 5.56 0.00 40.77 3.69
151 152 1.303799 CCATGCTGACACTGCACTCC 61.304 60.000 5.56 0.00 40.77 3.85
152 153 0.321034 TCCATGCTGACACTGCACTC 60.321 55.000 5.56 0.00 40.77 3.51
153 154 0.321387 CTCCATGCTGACACTGCACT 60.321 55.000 5.56 0.00 40.77 4.40
154 155 1.303799 CCTCCATGCTGACACTGCAC 61.304 60.000 5.56 0.00 40.77 4.57
155 156 1.002990 CCTCCATGCTGACACTGCA 60.003 57.895 5.87 5.87 42.03 4.41
156 157 0.250234 TACCTCCATGCTGACACTGC 59.750 55.000 0.00 0.00 0.00 4.40
157 158 1.827344 TCTACCTCCATGCTGACACTG 59.173 52.381 0.00 0.00 0.00 3.66
158 159 2.106566 CTCTACCTCCATGCTGACACT 58.893 52.381 0.00 0.00 0.00 3.55
159 160 2.103373 TCTCTACCTCCATGCTGACAC 58.897 52.381 0.00 0.00 0.00 3.67
160 161 2.532250 TCTCTACCTCCATGCTGACA 57.468 50.000 0.00 0.00 0.00 3.58
161 162 3.449018 TCTTTCTCTACCTCCATGCTGAC 59.551 47.826 0.00 0.00 0.00 3.51
162 163 3.713003 TCTTTCTCTACCTCCATGCTGA 58.287 45.455 0.00 0.00 0.00 4.26
163 164 4.378774 CATCTTTCTCTACCTCCATGCTG 58.621 47.826 0.00 0.00 0.00 4.41
164 165 3.181456 GCATCTTTCTCTACCTCCATGCT 60.181 47.826 0.00 0.00 33.98 3.79
165 166 3.137533 GCATCTTTCTCTACCTCCATGC 58.862 50.000 0.00 0.00 0.00 4.06
166 167 3.068732 TCGCATCTTTCTCTACCTCCATG 59.931 47.826 0.00 0.00 0.00 3.66
167 168 3.068873 GTCGCATCTTTCTCTACCTCCAT 59.931 47.826 0.00 0.00 0.00 3.41
168 169 2.427453 GTCGCATCTTTCTCTACCTCCA 59.573 50.000 0.00 0.00 0.00 3.86
169 170 2.691011 AGTCGCATCTTTCTCTACCTCC 59.309 50.000 0.00 0.00 0.00 4.30
170 171 3.701241 CAGTCGCATCTTTCTCTACCTC 58.299 50.000 0.00 0.00 0.00 3.85
171 172 2.159170 GCAGTCGCATCTTTCTCTACCT 60.159 50.000 0.00 0.00 38.36 3.08
172 173 2.197577 GCAGTCGCATCTTTCTCTACC 58.802 52.381 0.00 0.00 38.36 3.18
173 174 2.881074 TGCAGTCGCATCTTTCTCTAC 58.119 47.619 0.00 0.00 45.36 2.59
185 186 2.401766 CCTTCCCATGTGCAGTCGC 61.402 63.158 0.00 0.00 39.24 5.19
186 187 1.746615 CCCTTCCCATGTGCAGTCG 60.747 63.158 0.00 0.00 0.00 4.18
187 188 1.379044 CCCCTTCCCATGTGCAGTC 60.379 63.158 0.00 0.00 0.00 3.51
188 189 1.217057 ATCCCCTTCCCATGTGCAGT 61.217 55.000 0.00 0.00 0.00 4.40
189 190 0.754217 CATCCCCTTCCCATGTGCAG 60.754 60.000 0.00 0.00 0.00 4.41
190 191 1.307309 CATCCCCTTCCCATGTGCA 59.693 57.895 0.00 0.00 0.00 4.57
191 192 0.324645 AACATCCCCTTCCCATGTGC 60.325 55.000 0.00 0.00 31.00 4.57
192 193 2.236489 AAACATCCCCTTCCCATGTG 57.764 50.000 0.00 0.00 31.00 3.21
193 194 2.358195 GCTAAACATCCCCTTCCCATGT 60.358 50.000 0.00 0.00 31.90 3.21
194 195 2.310538 GCTAAACATCCCCTTCCCATG 58.689 52.381 0.00 0.00 0.00 3.66
195 196 1.929494 TGCTAAACATCCCCTTCCCAT 59.071 47.619 0.00 0.00 0.00 4.00
196 197 1.284785 CTGCTAAACATCCCCTTCCCA 59.715 52.381 0.00 0.00 0.00 4.37
197 198 2.024306 GCTGCTAAACATCCCCTTCCC 61.024 57.143 0.00 0.00 0.00 3.97
198 199 1.393603 GCTGCTAAACATCCCCTTCC 58.606 55.000 0.00 0.00 0.00 3.46
199 200 1.017387 CGCTGCTAAACATCCCCTTC 58.983 55.000 0.00 0.00 0.00 3.46
200 201 0.618458 TCGCTGCTAAACATCCCCTT 59.382 50.000 0.00 0.00 0.00 3.95
201 202 0.618458 TTCGCTGCTAAACATCCCCT 59.382 50.000 0.00 0.00 0.00 4.79
202 203 0.733150 GTTCGCTGCTAAACATCCCC 59.267 55.000 9.13 0.00 0.00 4.81
203 204 1.130561 GTGTTCGCTGCTAAACATCCC 59.869 52.381 16.81 5.04 37.67 3.85
204 205 1.804151 TGTGTTCGCTGCTAAACATCC 59.196 47.619 16.81 8.67 37.67 3.51
205 206 3.747099 ATGTGTTCGCTGCTAAACATC 57.253 42.857 16.81 12.26 37.67 3.06
206 207 4.475944 GAAATGTGTTCGCTGCTAAACAT 58.524 39.130 16.81 10.05 37.67 2.71
207 208 3.605922 CGAAATGTGTTCGCTGCTAAACA 60.606 43.478 11.79 11.79 35.05 2.83
208 209 2.902484 CGAAATGTGTTCGCTGCTAAAC 59.098 45.455 0.00 3.02 35.05 2.01
209 210 2.095969 CCGAAATGTGTTCGCTGCTAAA 60.096 45.455 3.02 0.00 40.30 1.85
210 211 1.463056 CCGAAATGTGTTCGCTGCTAA 59.537 47.619 3.02 0.00 40.30 3.09
211 212 1.075542 CCGAAATGTGTTCGCTGCTA 58.924 50.000 3.02 0.00 40.30 3.49
212 213 1.868997 CCGAAATGTGTTCGCTGCT 59.131 52.632 3.02 0.00 40.30 4.24
213 214 1.797537 GCCGAAATGTGTTCGCTGC 60.798 57.895 3.02 0.00 40.30 5.25
214 215 0.453282 CAGCCGAAATGTGTTCGCTG 60.453 55.000 14.00 14.00 40.30 5.18
215 216 1.868997 CAGCCGAAATGTGTTCGCT 59.131 52.632 3.02 2.11 40.30 4.93
216 217 1.797537 GCAGCCGAAATGTGTTCGC 60.798 57.895 3.02 0.00 40.30 4.70
217 218 0.179215 GAGCAGCCGAAATGTGTTCG 60.179 55.000 1.58 1.58 41.21 3.95
218 219 0.874390 TGAGCAGCCGAAATGTGTTC 59.126 50.000 0.00 0.00 0.00 3.18
219 220 1.317613 TTGAGCAGCCGAAATGTGTT 58.682 45.000 0.00 0.00 0.00 3.32
220 221 1.317613 TTTGAGCAGCCGAAATGTGT 58.682 45.000 0.00 0.00 0.00 3.72
221 222 2.420628 TTTTGAGCAGCCGAAATGTG 57.579 45.000 0.00 0.00 0.00 3.21
222 223 3.005684 TCAATTTTGAGCAGCCGAAATGT 59.994 39.130 8.90 0.81 32.16 2.71
223 224 3.577667 TCAATTTTGAGCAGCCGAAATG 58.422 40.909 8.90 5.48 32.16 2.32
224 225 3.841643 CTCAATTTTGAGCAGCCGAAAT 58.158 40.909 7.34 0.00 46.97 2.17
225 226 3.287312 CTCAATTTTGAGCAGCCGAAA 57.713 42.857 7.34 0.00 46.97 3.46
226 227 2.995466 CTCAATTTTGAGCAGCCGAA 57.005 45.000 7.34 0.00 46.97 4.30
235 236 2.503331 TCGGCTGCTTCTCAATTTTGA 58.497 42.857 0.00 0.00 35.57 2.69
236 237 2.995466 TCGGCTGCTTCTCAATTTTG 57.005 45.000 0.00 0.00 0.00 2.44
237 238 2.821969 ACATCGGCTGCTTCTCAATTTT 59.178 40.909 0.00 0.00 0.00 1.82
238 239 2.440409 ACATCGGCTGCTTCTCAATTT 58.560 42.857 0.00 0.00 0.00 1.82
239 240 2.119801 ACATCGGCTGCTTCTCAATT 57.880 45.000 0.00 0.00 0.00 2.32
240 241 2.119801 AACATCGGCTGCTTCTCAAT 57.880 45.000 0.00 0.00 0.00 2.57
241 242 1.806542 GAAACATCGGCTGCTTCTCAA 59.193 47.619 0.00 0.00 29.12 3.02
242 243 1.002430 AGAAACATCGGCTGCTTCTCA 59.998 47.619 0.00 0.00 35.82 3.27
243 244 1.396301 CAGAAACATCGGCTGCTTCTC 59.604 52.381 0.00 0.00 38.04 2.87
244 245 1.002430 TCAGAAACATCGGCTGCTTCT 59.998 47.619 0.00 0.00 40.18 2.85
245 246 1.442769 TCAGAAACATCGGCTGCTTC 58.557 50.000 0.00 0.00 31.35 3.86
246 247 2.119801 ATCAGAAACATCGGCTGCTT 57.880 45.000 0.00 0.00 0.00 3.91
247 248 2.988010 TATCAGAAACATCGGCTGCT 57.012 45.000 0.00 0.00 0.00 4.24
248 249 4.355543 TTTTATCAGAAACATCGGCTGC 57.644 40.909 0.00 0.00 0.00 5.25
249 250 7.816945 AAATTTTTATCAGAAACATCGGCTG 57.183 32.000 0.00 0.00 0.00 4.85
250 251 9.573133 CTTAAATTTTTATCAGAAACATCGGCT 57.427 29.630 0.00 0.00 0.00 5.52
251 252 8.321005 GCTTAAATTTTTATCAGAAACATCGGC 58.679 33.333 0.00 0.00 0.00 5.54
252 253 9.352784 TGCTTAAATTTTTATCAGAAACATCGG 57.647 29.630 0.00 0.00 0.00 4.18
255 256 9.933723 AGCTGCTTAAATTTTTATCAGAAACAT 57.066 25.926 0.00 0.00 31.20 2.71
270 271 9.599866 ACTTTTGAAAAGTTTAGCTGCTTAAAT 57.400 25.926 16.96 0.43 0.00 1.40
271 272 8.996024 ACTTTTGAAAAGTTTAGCTGCTTAAA 57.004 26.923 16.96 3.92 0.00 1.52
272 273 8.996024 AACTTTTGAAAAGTTTAGCTGCTTAA 57.004 26.923 25.58 1.17 37.18 1.85
273 274 8.247562 TGAACTTTTGAAAAGTTTAGCTGCTTA 58.752 29.630 29.87 6.41 40.27 3.09
274 275 7.096551 TGAACTTTTGAAAAGTTTAGCTGCTT 58.903 30.769 29.87 10.72 40.27 3.91
275 276 6.630071 TGAACTTTTGAAAAGTTTAGCTGCT 58.370 32.000 29.87 11.36 40.27 4.24
276 277 6.885735 TGAACTTTTGAAAAGTTTAGCTGC 57.114 33.333 29.87 19.15 40.27 5.25
280 281 8.406297 ACCTAGCTGAACTTTTGAAAAGTTTAG 58.594 33.333 33.15 33.15 42.94 1.85
281 282 8.288689 ACCTAGCTGAACTTTTGAAAAGTTTA 57.711 30.769 29.87 25.57 40.27 2.01
282 283 7.170393 ACCTAGCTGAACTTTTGAAAAGTTT 57.830 32.000 29.87 19.47 40.27 2.66
283 284 6.775594 ACCTAGCTGAACTTTTGAAAAGTT 57.224 33.333 29.76 29.76 42.62 2.66
284 285 7.719633 TCATACCTAGCTGAACTTTTGAAAAGT 59.280 33.333 16.96 16.96 0.00 2.66
285 286 8.099364 TCATACCTAGCTGAACTTTTGAAAAG 57.901 34.615 15.59 15.59 0.00 2.27
286 287 8.635765 ATCATACCTAGCTGAACTTTTGAAAA 57.364 30.769 0.00 0.00 0.00 2.29
287 288 8.635765 AATCATACCTAGCTGAACTTTTGAAA 57.364 30.769 0.00 0.00 0.00 2.69
288 289 8.635765 AAATCATACCTAGCTGAACTTTTGAA 57.364 30.769 0.00 0.00 0.00 2.69
289 290 9.733556 TTAAATCATACCTAGCTGAACTTTTGA 57.266 29.630 0.00 0.00 0.00 2.69
290 291 9.774742 GTTAAATCATACCTAGCTGAACTTTTG 57.225 33.333 0.00 0.00 0.00 2.44
291 292 9.740710 AGTTAAATCATACCTAGCTGAACTTTT 57.259 29.630 0.00 0.00 0.00 2.27
292 293 9.384764 GAGTTAAATCATACCTAGCTGAACTTT 57.615 33.333 0.00 0.00 0.00 2.66
293 294 8.540388 TGAGTTAAATCATACCTAGCTGAACTT 58.460 33.333 0.56 0.00 0.00 2.66
294 295 8.079211 TGAGTTAAATCATACCTAGCTGAACT 57.921 34.615 0.56 0.00 0.00 3.01
295 296 8.718102 TTGAGTTAAATCATACCTAGCTGAAC 57.282 34.615 6.42 0.00 0.00 3.18
296 297 9.383519 CTTTGAGTTAAATCATACCTAGCTGAA 57.616 33.333 6.42 0.00 0.00 3.02
297 298 8.540388 ACTTTGAGTTAAATCATACCTAGCTGA 58.460 33.333 6.42 0.00 0.00 4.26
298 299 8.607459 CACTTTGAGTTAAATCATACCTAGCTG 58.393 37.037 6.42 0.00 0.00 4.24
299 300 8.540388 TCACTTTGAGTTAAATCATACCTAGCT 58.460 33.333 6.42 0.00 0.00 3.32
300 301 8.718102 TCACTTTGAGTTAAATCATACCTAGC 57.282 34.615 6.42 0.00 0.00 3.42
308 309 9.528018 GGAAACATTTCACTTTGAGTTAAATCA 57.472 29.630 0.56 0.56 38.92 2.57
309 310 9.528018 TGGAAACATTTCACTTTGAGTTAAATC 57.472 29.630 6.68 0.00 38.92 2.17
310 311 9.533253 CTGGAAACATTTCACTTTGAGTTAAAT 57.467 29.630 6.68 0.00 41.51 1.40
311 312 7.978975 CCTGGAAACATTTCACTTTGAGTTAAA 59.021 33.333 6.68 0.00 41.51 1.52
312 313 7.340743 TCCTGGAAACATTTCACTTTGAGTTAA 59.659 33.333 6.68 0.00 41.51 2.01
313 314 6.831353 TCCTGGAAACATTTCACTTTGAGTTA 59.169 34.615 6.68 0.00 41.51 2.24
314 315 5.656416 TCCTGGAAACATTTCACTTTGAGTT 59.344 36.000 6.68 0.00 41.51 3.01
315 316 5.200483 TCCTGGAAACATTTCACTTTGAGT 58.800 37.500 6.68 0.00 41.51 3.41
316 317 5.300286 ACTCCTGGAAACATTTCACTTTGAG 59.700 40.000 6.68 6.81 41.51 3.02
317 318 5.200483 ACTCCTGGAAACATTTCACTTTGA 58.800 37.500 6.68 0.00 41.51 2.69
318 319 5.520376 ACTCCTGGAAACATTTCACTTTG 57.480 39.130 6.68 0.00 41.51 2.77
319 320 7.505585 TCATAACTCCTGGAAACATTTCACTTT 59.494 33.333 6.68 0.00 41.51 2.66
320 321 7.004086 TCATAACTCCTGGAAACATTTCACTT 58.996 34.615 6.68 0.00 41.51 3.16
321 322 6.542821 TCATAACTCCTGGAAACATTTCACT 58.457 36.000 6.68 0.00 41.51 3.41
322 323 6.655003 TCTCATAACTCCTGGAAACATTTCAC 59.345 38.462 6.68 0.00 41.51 3.18
323 324 6.655003 GTCTCATAACTCCTGGAAACATTTCA 59.345 38.462 6.68 0.00 41.51 2.69
324 325 6.881602 AGTCTCATAACTCCTGGAAACATTTC 59.118 38.462 0.00 0.00 41.51 2.17
325 326 6.784031 AGTCTCATAACTCCTGGAAACATTT 58.216 36.000 0.00 0.00 41.51 2.32
326 327 6.380079 AGTCTCATAACTCCTGGAAACATT 57.620 37.500 0.00 0.00 41.51 2.71
327 328 6.380079 AAGTCTCATAACTCCTGGAAACAT 57.620 37.500 0.00 0.00 41.51 2.71
328 329 5.825593 AAGTCTCATAACTCCTGGAAACA 57.174 39.130 0.00 0.00 39.59 2.83
329 330 5.412904 CCAAAGTCTCATAACTCCTGGAAAC 59.587 44.000 0.00 0.00 35.58 2.78
330 331 5.560724 CCAAAGTCTCATAACTCCTGGAAA 58.439 41.667 0.00 0.00 35.58 3.13
331 332 4.565652 GCCAAAGTCTCATAACTCCTGGAA 60.566 45.833 0.00 0.00 35.58 3.53
332 333 3.055094 GCCAAAGTCTCATAACTCCTGGA 60.055 47.826 0.00 0.00 35.58 3.86
333 334 3.054802 AGCCAAAGTCTCATAACTCCTGG 60.055 47.826 0.00 0.00 36.18 4.45
334 335 4.213564 AGCCAAAGTCTCATAACTCCTG 57.786 45.455 0.00 0.00 0.00 3.86
335 336 5.273208 TCTAGCCAAAGTCTCATAACTCCT 58.727 41.667 0.00 0.00 0.00 3.69
336 337 5.599999 TCTAGCCAAAGTCTCATAACTCC 57.400 43.478 0.00 0.00 0.00 3.85
339 340 9.092876 GCATATATCTAGCCAAAGTCTCATAAC 57.907 37.037 0.00 0.00 0.00 1.89
340 341 9.040259 AGCATATATCTAGCCAAAGTCTCATAA 57.960 33.333 0.00 0.00 0.00 1.90
341 342 8.473219 CAGCATATATCTAGCCAAAGTCTCATA 58.527 37.037 0.00 0.00 0.00 2.15
342 343 7.038445 ACAGCATATATCTAGCCAAAGTCTCAT 60.038 37.037 0.00 0.00 0.00 2.90
343 344 6.268617 ACAGCATATATCTAGCCAAAGTCTCA 59.731 38.462 0.00 0.00 0.00 3.27
344 345 6.696411 ACAGCATATATCTAGCCAAAGTCTC 58.304 40.000 0.00 0.00 0.00 3.36
345 346 6.678568 ACAGCATATATCTAGCCAAAGTCT 57.321 37.500 0.00 0.00 0.00 3.24
346 347 7.831753 TCTACAGCATATATCTAGCCAAAGTC 58.168 38.462 0.00 0.00 0.00 3.01
347 348 7.782897 TCTACAGCATATATCTAGCCAAAGT 57.217 36.000 0.00 0.00 0.00 2.66
348 349 8.310382 ACTTCTACAGCATATATCTAGCCAAAG 58.690 37.037 0.00 0.00 0.00 2.77
349 350 8.090831 CACTTCTACAGCATATATCTAGCCAAA 58.909 37.037 0.00 0.00 0.00 3.28
350 351 7.606349 CACTTCTACAGCATATATCTAGCCAA 58.394 38.462 0.00 0.00 0.00 4.52
351 352 6.350528 GCACTTCTACAGCATATATCTAGCCA 60.351 42.308 0.00 0.00 0.00 4.75
352 353 6.039616 GCACTTCTACAGCATATATCTAGCC 58.960 44.000 0.00 0.00 0.00 3.93
353 354 6.039616 GGCACTTCTACAGCATATATCTAGC 58.960 44.000 0.00 0.00 0.00 3.42
354 355 6.261859 CGGCACTTCTACAGCATATATCTAG 58.738 44.000 0.00 0.00 0.00 2.43
355 356 5.393135 GCGGCACTTCTACAGCATATATCTA 60.393 44.000 0.00 0.00 0.00 1.98
356 357 4.619394 GCGGCACTTCTACAGCATATATCT 60.619 45.833 0.00 0.00 0.00 1.98
357 358 3.614616 GCGGCACTTCTACAGCATATATC 59.385 47.826 0.00 0.00 0.00 1.63
358 359 3.589988 GCGGCACTTCTACAGCATATAT 58.410 45.455 0.00 0.00 0.00 0.86
359 360 2.607038 CGCGGCACTTCTACAGCATATA 60.607 50.000 0.00 0.00 0.00 0.86
360 361 1.869754 CGCGGCACTTCTACAGCATAT 60.870 52.381 0.00 0.00 0.00 1.78
361 362 0.527600 CGCGGCACTTCTACAGCATA 60.528 55.000 0.00 0.00 0.00 3.14
362 363 1.811266 CGCGGCACTTCTACAGCAT 60.811 57.895 0.00 0.00 0.00 3.79
363 364 2.432456 CGCGGCACTTCTACAGCA 60.432 61.111 0.00 0.00 0.00 4.41
364 365 2.432628 ACGCGGCACTTCTACAGC 60.433 61.111 12.47 0.00 0.00 4.40
365 366 0.458543 ATGACGCGGCACTTCTACAG 60.459 55.000 21.63 0.00 0.00 2.74
366 367 0.735978 CATGACGCGGCACTTCTACA 60.736 55.000 21.63 0.00 0.00 2.74
367 368 1.999051 CATGACGCGGCACTTCTAC 59.001 57.895 21.63 0.00 0.00 2.59
368 369 1.809619 GCATGACGCGGCACTTCTA 60.810 57.895 21.63 0.00 0.00 2.10
369 370 3.121030 GCATGACGCGGCACTTCT 61.121 61.111 21.63 0.00 0.00 2.85
370 371 4.166011 GGCATGACGCGGCACTTC 62.166 66.667 21.63 9.45 43.84 3.01
372 373 4.783621 ATGGCATGACGCGGCACT 62.784 61.111 21.63 3.29 42.25 4.40
373 374 4.541482 CATGGCATGACGCGGCAC 62.541 66.667 21.63 5.01 42.25 5.01
374 375 3.672295 TACATGGCATGACGCGGCA 62.672 57.895 32.74 21.39 43.84 5.69
375 376 2.894879 TACATGGCATGACGCGGC 60.895 61.111 32.74 8.67 43.84 6.53
376 377 1.490693 GAGTACATGGCATGACGCGG 61.491 60.000 32.74 6.59 43.84 6.46
377 378 1.490693 GGAGTACATGGCATGACGCG 61.491 60.000 32.74 3.53 43.84 6.01
378 379 1.160329 GGGAGTACATGGCATGACGC 61.160 60.000 32.74 24.02 41.28 5.19
379 380 0.465705 AGGGAGTACATGGCATGACG 59.534 55.000 32.74 8.17 0.00 4.35
380 381 1.765314 AGAGGGAGTACATGGCATGAC 59.235 52.381 32.74 23.64 0.00 3.06
381 382 1.764723 CAGAGGGAGTACATGGCATGA 59.235 52.381 32.74 14.24 0.00 3.07
382 383 1.487976 ACAGAGGGAGTACATGGCATG 59.512 52.381 25.31 25.31 0.00 4.06
383 384 1.765314 GACAGAGGGAGTACATGGCAT 59.235 52.381 0.00 0.00 0.00 4.40
384 385 1.195115 GACAGAGGGAGTACATGGCA 58.805 55.000 0.00 0.00 0.00 4.92
385 386 0.466124 GGACAGAGGGAGTACATGGC 59.534 60.000 0.00 0.00 0.00 4.40
386 387 2.166907 AGGACAGAGGGAGTACATGG 57.833 55.000 0.00 0.00 0.00 3.66
387 388 5.677319 TTTTAGGACAGAGGGAGTACATG 57.323 43.478 0.00 0.00 0.00 3.21
388 389 7.989947 TTATTTTAGGACAGAGGGAGTACAT 57.010 36.000 0.00 0.00 0.00 2.29
389 390 7.801893 TTTATTTTAGGACAGAGGGAGTACA 57.198 36.000 0.00 0.00 0.00 2.90
390 391 8.265764 ACATTTATTTTAGGACAGAGGGAGTAC 58.734 37.037 0.00 0.00 0.00 2.73
391 392 8.388656 ACATTTATTTTAGGACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
392 393 7.272144 ACATTTATTTTAGGACAGAGGGAGT 57.728 36.000 0.00 0.00 0.00 3.85
393 394 8.581253 AAACATTTATTTTAGGACAGAGGGAG 57.419 34.615 0.00 0.00 0.00 4.30
394 395 8.950007 AAAACATTTATTTTAGGACAGAGGGA 57.050 30.769 0.00 0.00 29.93 4.20
516 518 7.228507 TGCATATAAGTCACAAACAAGTGTCTT 59.771 33.333 10.41 10.41 45.29 3.01
518 520 6.797033 GTGCATATAAGTCACAAACAAGTGTC 59.203 38.462 0.00 0.00 40.37 3.67
519 521 6.262049 TGTGCATATAAGTCACAAACAAGTGT 59.738 34.615 0.00 0.00 40.37 3.55
520 522 6.667370 TGTGCATATAAGTCACAAACAAGTG 58.333 36.000 0.00 0.00 37.73 3.16
521 523 6.875948 TGTGCATATAAGTCACAAACAAGT 57.124 33.333 0.00 0.00 37.73 3.16
522 524 7.535258 GTCTTGTGCATATAAGTCACAAACAAG 59.465 37.037 14.38 0.00 46.14 3.16
523 525 7.359595 GTCTTGTGCATATAAGTCACAAACAA 58.640 34.615 14.38 0.00 46.14 2.83
524 526 6.347321 CGTCTTGTGCATATAAGTCACAAACA 60.347 38.462 14.38 6.21 46.14 2.83
525 527 6.015504 CGTCTTGTGCATATAAGTCACAAAC 58.984 40.000 14.38 13.58 46.14 2.93
526 528 5.699001 ACGTCTTGTGCATATAAGTCACAAA 59.301 36.000 14.38 7.25 46.14 2.83
527 529 5.120053 CACGTCTTGTGCATATAAGTCACAA 59.880 40.000 13.43 13.43 45.16 3.33
586 601 0.774908 TTGAATGGAAGGAACCCGGT 59.225 50.000 0.00 0.00 0.00 5.28
662 679 2.916934 TGGGTCCTACAGGCTTATTGTT 59.083 45.455 0.00 0.00 34.44 2.83
671 688 0.331278 TTGCCAATGGGTCCTACAGG 59.669 55.000 0.00 0.00 36.17 4.00
745 762 1.747325 ATGTGTTGTGGGCTTGTGGC 61.747 55.000 0.00 0.00 40.90 5.01
747 764 2.101249 AGAAATGTGTTGTGGGCTTGTG 59.899 45.455 0.00 0.00 0.00 3.33
748 765 2.387757 AGAAATGTGTTGTGGGCTTGT 58.612 42.857 0.00 0.00 0.00 3.16
749 766 3.383761 GAAGAAATGTGTTGTGGGCTTG 58.616 45.455 0.00 0.00 0.00 4.01
750 767 2.365293 GGAAGAAATGTGTTGTGGGCTT 59.635 45.455 0.00 0.00 0.00 4.35
751 768 1.963515 GGAAGAAATGTGTTGTGGGCT 59.036 47.619 0.00 0.00 0.00 5.19
752 769 1.000843 GGGAAGAAATGTGTTGTGGGC 59.999 52.381 0.00 0.00 0.00 5.36
753 770 2.315176 TGGGAAGAAATGTGTTGTGGG 58.685 47.619 0.00 0.00 0.00 4.61
774 791 3.119708 GCAACTTGCTTCATCGAGGAAAT 60.120 43.478 14.10 0.00 40.96 2.17
847 866 2.024176 TGTGAGAGACCTTTGGGCTA 57.976 50.000 0.00 0.00 35.63 3.93
863 882 1.227823 TGGGACGGCTTGACTTGTG 60.228 57.895 0.00 0.00 0.00 3.33
911 2403 0.824759 CCAGTACCCAGTAGCAGACC 59.175 60.000 0.00 0.00 0.00 3.85
919 2411 6.014499 GTGTCTATATAATGCCAGTACCCAGT 60.014 42.308 0.00 0.00 0.00 4.00
920 2412 6.014584 TGTGTCTATATAATGCCAGTACCCAG 60.015 42.308 0.00 0.00 0.00 4.45
921 2413 5.841783 TGTGTCTATATAATGCCAGTACCCA 59.158 40.000 0.00 0.00 0.00 4.51
922 2414 6.354794 TGTGTCTATATAATGCCAGTACCC 57.645 41.667 0.00 0.00 0.00 3.69
923 2415 6.313905 GCATGTGTCTATATAATGCCAGTACC 59.686 42.308 5.39 0.00 38.12 3.34
924 2416 7.295952 GCATGTGTCTATATAATGCCAGTAC 57.704 40.000 5.39 0.00 38.12 2.73
948 2440 2.895424 AAGGGTGAGCCTTCCGTGG 61.895 63.158 10.67 0.00 34.45 4.94
952 2444 3.485764 GATCAAGGGTGAGCCTTCC 57.514 57.895 13.88 2.19 37.14 3.46
982 2474 2.158842 CCATTTTTCTGTTGGTTGGCCA 60.159 45.455 0.00 0.00 44.38 5.36
1030 2522 0.977108 AGCAGAAGGAGGCAGAGGAG 60.977 60.000 0.00 0.00 0.00 3.69
1078 2570 4.549516 GTAGGACGCGGCGGAGAC 62.550 72.222 27.37 14.39 0.00 3.36
1079 2571 4.790962 AGTAGGACGCGGCGGAGA 62.791 66.667 27.37 5.88 0.00 3.71
1080 2572 4.253257 GAGTAGGACGCGGCGGAG 62.253 72.222 27.37 0.00 0.00 4.63
1142 2646 0.944311 TGAGAGAGTTTCGTTGCCGC 60.944 55.000 0.00 0.00 0.00 6.53
1155 2659 2.300956 AGAAGCTGGTGAGTGAGAGA 57.699 50.000 0.00 0.00 0.00 3.10
1176 2680 2.526888 AGTAACCGGTGGAGATCTGA 57.473 50.000 8.52 0.00 0.00 3.27
1309 2813 0.179124 GTGAGGTGCACGAGATCCTC 60.179 60.000 11.45 11.19 44.54 3.71
1362 2869 3.834799 CCACGGCTCCGGTAGGTC 61.835 72.222 13.31 0.00 44.69 3.85
1381 2891 2.522638 CGGTGTAATTCTCGCGGCC 61.523 63.158 6.13 0.00 0.00 6.13
1452 2962 0.400213 TCCCGACCATGCAAAGTTCT 59.600 50.000 0.00 0.00 0.00 3.01
1458 2968 2.354729 CCCTTCCCGACCATGCAA 59.645 61.111 0.00 0.00 0.00 4.08
1570 3080 0.614979 ACCTGTAGACTGCCGGTCAT 60.615 55.000 6.42 0.00 46.72 3.06
1746 3265 2.805295 CGAGGTCACCAGCTGTTGTTTA 60.805 50.000 13.81 0.00 0.00 2.01
1758 3277 1.215647 CAGCCTGTACGAGGTCACC 59.784 63.158 11.47 0.00 44.97 4.02
1935 3472 4.459089 GCCACGACAGCCTCCTCC 62.459 72.222 0.00 0.00 0.00 4.30
2063 3600 1.407989 GGAACCAGAAGCTCATCCCTG 60.408 57.143 0.00 0.00 0.00 4.45
2064 3601 0.915364 GGAACCAGAAGCTCATCCCT 59.085 55.000 0.00 0.00 0.00 4.20
2142 3679 2.943978 GCTGCCAGTACCCGTCTGT 61.944 63.158 0.00 0.00 0.00 3.41
2173 3710 2.397252 GATGCTCGACGCTGTTGC 59.603 61.111 8.07 0.00 40.11 4.17
2281 3818 3.028366 GCTTCTTCGCCTCGGCAAC 62.028 63.158 8.87 0.00 42.06 4.17
2385 3931 1.714414 GCTGCTCTGCACGATGAAG 59.286 57.895 0.00 0.00 33.79 3.02
2389 3935 4.827087 CCCGCTGCTCTGCACGAT 62.827 66.667 13.05 0.00 36.03 3.73
2433 3985 2.359169 GGAGACCATCACCGAGCCA 61.359 63.158 0.00 0.00 0.00 4.75
2492 4050 3.242518 TCTTGCTTCGTGTCAACTATCG 58.757 45.455 0.00 0.00 0.00 2.92
2494 4052 4.867047 CAGATCTTGCTTCGTGTCAACTAT 59.133 41.667 0.00 0.00 0.00 2.12
2576 4137 4.340381 GTGTATACCTGTACGACCCATTCT 59.660 45.833 0.00 0.00 0.00 2.40
2606 4167 0.520827 GATCCGTCGACGTGTCTCAC 60.521 60.000 33.49 14.95 37.74 3.51
2622 4189 1.227205 CACGCCCTCTGCTGAGATC 60.227 63.158 21.10 11.09 42.73 2.75
2662 4229 3.364441 GCAGCCGACCATGCACAA 61.364 61.111 0.00 0.00 42.11 3.33
2685 4252 2.149803 AATCCGTCGAGCCGTTGTGA 62.150 55.000 0.00 0.00 0.00 3.58
2703 4270 2.036217 CACGGTTACCAGTACCTGACAA 59.964 50.000 1.13 0.00 32.44 3.18
2710 4277 2.982470 CGAACTTCACGGTTACCAGTAC 59.018 50.000 1.13 0.00 0.00 2.73
2822 4389 2.004017 TCCCGTACAAAATGATGTCGC 58.996 47.619 0.00 0.00 34.75 5.19
2851 4418 2.738521 CGCCTCCGACACTTGGTG 60.739 66.667 0.00 0.00 39.75 4.17
3059 4626 3.296842 TACCGGCTCCTCCTGCTCA 62.297 63.158 0.00 0.00 0.00 4.26
3082 4649 1.410517 CCAGTCGCTCATCCAGTACAT 59.589 52.381 0.00 0.00 0.00 2.29
3705 5281 1.066286 CCTCCTCTGTGAAGGAAGCAG 60.066 57.143 0.00 0.00 44.81 4.24
3749 5325 3.435671 CCGTTTTCTGTTAGATGGTGGAC 59.564 47.826 0.00 0.00 0.00 4.02
3754 5330 5.523916 CAGTATCCCGTTTTCTGTTAGATGG 59.476 44.000 0.00 0.00 0.00 3.51
3942 5539 7.772166 AGATCTTGTGAACATAACATCGACTA 58.228 34.615 0.00 0.00 0.00 2.59
4058 5655 0.179134 GTCCCGTCTCAATCGACTGG 60.179 60.000 0.00 0.00 38.99 4.00
4067 5664 2.044555 CGTAGCCAGTCCCGTCTCA 61.045 63.158 0.00 0.00 0.00 3.27
4068 5665 2.772691 CCGTAGCCAGTCCCGTCTC 61.773 68.421 0.00 0.00 0.00 3.36
4069 5666 2.754658 CCGTAGCCAGTCCCGTCT 60.755 66.667 0.00 0.00 0.00 4.18
4070 5667 3.834799 CCCGTAGCCAGTCCCGTC 61.835 72.222 0.00 0.00 0.00 4.79
4071 5668 4.691359 ACCCGTAGCCAGTCCCGT 62.691 66.667 0.00 0.00 0.00 5.28
4072 5669 3.834799 GACCCGTAGCCAGTCCCG 61.835 72.222 0.00 0.00 0.00 5.14
4105 5702 3.582780 GTCAATCGACGGACCTAAAACT 58.417 45.455 6.97 0.00 31.07 2.66
4116 5713 4.864916 AATGATTCAAGGTCAATCGACG 57.135 40.909 0.00 0.00 43.61 5.12
4128 5725 4.338118 GGCCGGTCAATCTAAATGATTCAA 59.662 41.667 0.00 0.00 43.00 2.69
4139 5736 3.036429 GCCTCTGGCCGGTCAATCT 62.036 63.158 11.40 0.00 44.06 2.40
4170 5767 4.160635 GGCCGGAATGCGTTCGTG 62.161 66.667 5.05 7.46 35.10 4.35
4171 5768 3.969250 ATGGCCGGAATGCGTTCGT 62.969 57.895 5.05 0.00 35.10 3.85
4246 6101 9.682465 TGACGCTCTCTTATACACCTATAATAT 57.318 33.333 0.00 0.00 0.00 1.28
4247 6102 9.682465 ATGACGCTCTCTTATACACCTATAATA 57.318 33.333 0.00 0.00 0.00 0.98
4248 6103 7.997773 TGACGCTCTCTTATACACCTATAAT 57.002 36.000 0.00 0.00 0.00 1.28
4249 6104 7.997773 ATGACGCTCTCTTATACACCTATAA 57.002 36.000 0.00 0.00 0.00 0.98
4250 6105 7.997773 AATGACGCTCTCTTATACACCTATA 57.002 36.000 0.00 0.00 0.00 1.31
4251 6106 6.902771 AATGACGCTCTCTTATACACCTAT 57.097 37.500 0.00 0.00 0.00 2.57
4252 6107 7.997773 ATAATGACGCTCTCTTATACACCTA 57.002 36.000 0.00 0.00 0.00 3.08
4253 6108 6.902771 ATAATGACGCTCTCTTATACACCT 57.097 37.500 0.00 0.00 0.00 4.00
4254 6109 7.948278 AAATAATGACGCTCTCTTATACACC 57.052 36.000 0.00 0.00 0.00 4.16
4295 6150 9.881529 GCTCTCTTATACACCTATAATATACGC 57.118 37.037 0.00 0.00 0.00 4.42
4365 6220 8.019669 GCATGCAAATATGTATTACTCTTCAGG 58.980 37.037 14.21 0.00 28.42 3.86
4394 6249 9.797642 TGAGATTGCATATATAATCACAAACCT 57.202 29.630 9.76 2.54 36.11 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.