Multiple sequence alignment - TraesCS3B01G301100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G301100 | chr3B | 100.000 | 7337 | 0 | 0 | 1 | 7337 | 483000778 | 482993442 | 0.000000e+00 | 13549.0 |
1 | TraesCS3B01G301100 | chr3B | 100.000 | 35 | 0 | 0 | 4669 | 4703 | 482996008 | 482995974 | 1.710000e-06 | 65.8 |
2 | TraesCS3B01G301100 | chr3B | 100.000 | 35 | 0 | 0 | 4771 | 4805 | 482996110 | 482996076 | 1.710000e-06 | 65.8 |
3 | TraesCS3B01G301100 | chr3D | 95.205 | 7278 | 153 | 58 | 22 | 7196 | 371897982 | 371890798 | 0.000000e+00 | 11326.0 |
4 | TraesCS3B01G301100 | chr3D | 82.759 | 116 | 17 | 3 | 7190 | 7302 | 527004744 | 527004859 | 4.680000e-17 | 100.0 |
5 | TraesCS3B01G301100 | chr3D | 100.000 | 35 | 0 | 0 | 4669 | 4703 | 371893242 | 371893208 | 1.710000e-06 | 65.8 |
6 | TraesCS3B01G301100 | chr3D | 100.000 | 34 | 0 | 0 | 4771 | 4804 | 371893344 | 371893311 | 6.150000e-06 | 63.9 |
7 | TraesCS3B01G301100 | chr3A | 91.142 | 4753 | 251 | 61 | 22 | 4714 | 493134566 | 493129924 | 0.000000e+00 | 6288.0 |
8 | TraesCS3B01G301100 | chr3A | 90.453 | 2493 | 158 | 43 | 4708 | 7149 | 493129688 | 493127225 | 0.000000e+00 | 3212.0 |
9 | TraesCS3B01G301100 | chr3A | 81.164 | 292 | 46 | 4 | 5993 | 6275 | 493128351 | 493128060 | 7.410000e-55 | 226.0 |
10 | TraesCS3B01G301100 | chr3A | 78.744 | 207 | 31 | 10 | 6107 | 6305 | 493128387 | 493128186 | 7.730000e-25 | 126.0 |
11 | TraesCS3B01G301100 | chr3A | 90.000 | 90 | 7 | 2 | 7191 | 7278 | 721240191 | 721240280 | 1.670000e-21 | 115.0 |
12 | TraesCS3B01G301100 | chr3A | 100.000 | 35 | 0 | 0 | 4669 | 4703 | 493129626 | 493129592 | 1.710000e-06 | 65.8 |
13 | TraesCS3B01G301100 | chr3A | 97.143 | 35 | 1 | 0 | 4771 | 4805 | 493129969 | 493129935 | 7.950000e-05 | 60.2 |
14 | TraesCS3B01G301100 | chr2A | 87.052 | 363 | 15 | 5 | 175 | 533 | 740483824 | 740484158 | 1.490000e-101 | 381.0 |
15 | TraesCS3B01G301100 | chr2D | 87.368 | 95 | 11 | 1 | 7193 | 7286 | 612704875 | 612704781 | 2.800000e-19 | 108.0 |
16 | TraesCS3B01G301100 | chr2D | 86.316 | 95 | 12 | 1 | 7202 | 7295 | 14815818 | 14815724 | 1.300000e-17 | 102.0 |
17 | TraesCS3B01G301100 | chr7A | 85.859 | 99 | 12 | 2 | 7193 | 7289 | 669410685 | 669410783 | 3.620000e-18 | 104.0 |
18 | TraesCS3B01G301100 | chr7A | 87.640 | 89 | 10 | 1 | 7202 | 7289 | 615335476 | 615335564 | 1.300000e-17 | 102.0 |
19 | TraesCS3B01G301100 | chr2B | 88.235 | 85 | 10 | 0 | 7202 | 7286 | 134608145 | 134608229 | 1.300000e-17 | 102.0 |
20 | TraesCS3B01G301100 | chr5D | 83.962 | 106 | 13 | 4 | 7183 | 7286 | 557210930 | 557211033 | 1.680000e-16 | 99.0 |
21 | TraesCS3B01G301100 | chr7B | 84.000 | 100 | 14 | 2 | 7193 | 7290 | 244219306 | 244219405 | 2.180000e-15 | 95.3 |
22 | TraesCS3B01G301100 | chr1A | 95.349 | 43 | 2 | 0 | 4587 | 4629 | 537057576 | 537057534 | 1.320000e-07 | 69.4 |
23 | TraesCS3B01G301100 | chr5B | 97.222 | 36 | 1 | 0 | 4587 | 4622 | 643906056 | 643906021 | 2.210000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G301100 | chr3B | 482993442 | 483000778 | 7336 | True | 13549.00 | 13549 | 100.0000 | 1 | 7337 | 1 | chr3B.!!$R1 | 7336 |
1 | TraesCS3B01G301100 | chr3D | 371890798 | 371897982 | 7184 | True | 11326.00 | 11326 | 95.2050 | 22 | 7196 | 1 | chr3D.!!$R1 | 7174 |
2 | TraesCS3B01G301100 | chr3A | 493127225 | 493134566 | 7341 | True | 1983.56 | 6288 | 88.3006 | 22 | 7149 | 5 | chr3A.!!$R2 | 7127 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
83 | 84 | 1.756538 | CCAAAATATGCCTCGCCCTTT | 59.243 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 | F |
1064 | 1093 | 0.178767 | TGCTCCTTGTCCATCCATCG | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.84 | F |
1135 | 1169 | 0.322008 | GGGGTTTGTCTGCTCTCTGG | 60.322 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 | F |
1192 | 1234 | 0.663153 | GCGGTTCCATTGCCATCTAC | 59.337 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 | F |
2915 | 3009 | 1.356938 | GGTCAAGCACCGTAGCTAAC | 58.643 | 55.000 | 0.00 | 2.15 | 45.89 | 2.34 | F |
3516 | 3615 | 0.238289 | ACGCAGCACAAAGTATGCAC | 59.762 | 50.000 | 0.00 | 0.00 | 45.92 | 4.57 | F |
3743 | 3845 | 0.738389 | CGTCCAGCAAGTTTGTGGTT | 59.262 | 50.000 | 10.90 | 0.00 | 33.75 | 3.67 | F |
4049 | 4151 | 4.928661 | TGAGCAAGCTTTATTCTTCGTC | 57.071 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 | F |
5711 | 6066 | 2.233676 | CCTGCGTATAGTGATATGCCCA | 59.766 | 50.000 | 6.67 | 0.00 | 46.16 | 5.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1164 | 1203 | 0.178975 | AATGGAACCGCCCAACTCAA | 60.179 | 50.000 | 0.00 | 0.0 | 40.04 | 3.02 | R |
2423 | 2502 | 3.257393 | CATTCGATCCAGCATAGTAGCC | 58.743 | 50.000 | 0.00 | 0.0 | 34.23 | 3.93 | R |
3059 | 3158 | 3.944087 | AGCAGTTCACCCTAGAATTGAC | 58.056 | 45.455 | 3.79 | 0.0 | 37.40 | 3.18 | R |
3203 | 3302 | 9.555727 | GGACTATAAGCAGTATAACCATTTTCA | 57.444 | 33.333 | 0.00 | 0.0 | 0.00 | 2.69 | R |
3906 | 4008 | 0.478072 | TCTGCTCCTGGGCTCAAAAA | 59.522 | 50.000 | 8.32 | 0.0 | 0.00 | 1.94 | R |
4893 | 5242 | 3.001330 | GTCGAAATTGAGGATTAGGCACG | 59.999 | 47.826 | 0.00 | 0.0 | 0.00 | 5.34 | R |
4959 | 5308 | 3.451178 | GCAATACCTCTTGAGTGTCCCTA | 59.549 | 47.826 | 0.00 | 0.0 | 0.00 | 3.53 | R |
5726 | 6081 | 3.640498 | TCCATGATGCCACAAAGTGAAAA | 59.360 | 39.130 | 0.00 | 0.0 | 35.23 | 2.29 | R |
6855 | 7281 | 1.139256 | GGAGATCTCCGGTCCCTTTTC | 59.861 | 57.143 | 25.78 | 0.0 | 40.36 | 2.29 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
83 | 84 | 1.756538 | CCAAAATATGCCTCGCCCTTT | 59.243 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
151 | 152 | 3.490759 | CAGGCCATCGTCACGCAC | 61.491 | 66.667 | 5.01 | 0.00 | 0.00 | 5.34 |
155 | 156 | 2.815211 | CCATCGTCACGCACCTGG | 60.815 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
299 | 306 | 3.415212 | CCAGGATCAAGAAAAGCACAGA | 58.585 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
342 | 349 | 3.384789 | AGCGATGGTAGTAGCTTTCATCA | 59.615 | 43.478 | 0.00 | 0.00 | 36.41 | 3.07 |
343 | 350 | 3.738282 | GCGATGGTAGTAGCTTTCATCAG | 59.262 | 47.826 | 0.00 | 0.00 | 35.32 | 2.90 |
344 | 351 | 4.499865 | GCGATGGTAGTAGCTTTCATCAGA | 60.500 | 45.833 | 0.00 | 0.00 | 35.32 | 3.27 |
345 | 352 | 5.777802 | CGATGGTAGTAGCTTTCATCAGAT | 58.222 | 41.667 | 0.00 | 0.00 | 35.32 | 2.90 |
346 | 353 | 5.861251 | CGATGGTAGTAGCTTTCATCAGATC | 59.139 | 44.000 | 0.00 | 0.00 | 35.32 | 2.75 |
347 | 354 | 6.515696 | CGATGGTAGTAGCTTTCATCAGATCA | 60.516 | 42.308 | 0.00 | 0.00 | 35.32 | 2.92 |
348 | 355 | 6.154203 | TGGTAGTAGCTTTCATCAGATCAG | 57.846 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
349 | 356 | 5.893824 | TGGTAGTAGCTTTCATCAGATCAGA | 59.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
350 | 357 | 6.040278 | TGGTAGTAGCTTTCATCAGATCAGAG | 59.960 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
351 | 358 | 6.040391 | GGTAGTAGCTTTCATCAGATCAGAGT | 59.960 | 42.308 | 0.00 | 0.00 | 0.00 | 3.24 |
352 | 359 | 6.543430 | AGTAGCTTTCATCAGATCAGAGTT | 57.457 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
353 | 360 | 7.652524 | AGTAGCTTTCATCAGATCAGAGTTA | 57.347 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
354 | 361 | 8.072321 | AGTAGCTTTCATCAGATCAGAGTTAA | 57.928 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
355 | 362 | 8.535335 | AGTAGCTTTCATCAGATCAGAGTTAAA | 58.465 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
356 | 363 | 9.155975 | GTAGCTTTCATCAGATCAGAGTTAAAA | 57.844 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
357 | 364 | 8.627208 | AGCTTTCATCAGATCAGAGTTAAAAA | 57.373 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
382 | 389 | 6.576662 | AGAAAGATCAGAGTTAGTTGACGA | 57.423 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
445 | 452 | 4.020662 | GCAACCACCAATATTTTCCTTCCA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
483 | 493 | 5.300752 | ACTGATAGTAATAGTGCCACATGC | 58.699 | 41.667 | 0.00 | 0.00 | 41.77 | 4.06 |
502 | 513 | 3.254060 | TGCTACGCTGTCTCTCATTTTC | 58.746 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
585 | 600 | 7.123397 | TGCTATGATTAACTCCTCCTATGCTAG | 59.877 | 40.741 | 0.00 | 0.00 | 0.00 | 3.42 |
586 | 601 | 7.123547 | GCTATGATTAACTCCTCCTATGCTAGT | 59.876 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
603 | 618 | 3.919197 | GCTAGTACCACTTTCGAGTTCAC | 59.081 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
630 | 650 | 4.981389 | CTCACGAGAGAAAAAGGTGAAG | 57.019 | 45.455 | 3.49 | 0.00 | 44.98 | 3.02 |
808 | 837 | 2.682136 | TTCCCAGCCGTCCGATCA | 60.682 | 61.111 | 0.00 | 0.00 | 0.00 | 2.92 |
1064 | 1093 | 0.178767 | TGCTCCTTGTCCATCCATCG | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1126 | 1160 | 3.075882 | TCTTGGATCAATGGGGTTTGTCT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1128 | 1162 | 1.478105 | GGATCAATGGGGTTTGTCTGC | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1129 | 1163 | 2.450476 | GATCAATGGGGTTTGTCTGCT | 58.550 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
1135 | 1169 | 0.322008 | GGGGTTTGTCTGCTCTCTGG | 60.322 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1162 | 1201 | 5.277825 | TGTTTTCATTTTCTAACCAGTGCG | 58.722 | 37.500 | 0.00 | 0.00 | 0.00 | 5.34 |
1190 | 1232 | 3.924507 | GCGGTTCCATTGCCATCT | 58.075 | 55.556 | 0.00 | 0.00 | 0.00 | 2.90 |
1191 | 1233 | 3.094386 | GCGGTTCCATTGCCATCTA | 57.906 | 52.632 | 0.00 | 0.00 | 0.00 | 1.98 |
1192 | 1234 | 0.663153 | GCGGTTCCATTGCCATCTAC | 59.337 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1202 | 1244 | 4.252073 | CATTGCCATCTACTAGCTCCATC | 58.748 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
1425 | 1473 | 4.620723 | TCTGATCTGGCTTTAAGGGACTA | 58.379 | 43.478 | 0.00 | 0.00 | 38.49 | 2.59 |
1525 | 1603 | 4.095483 | CCCAGTTCAATCTGCTATTGACAC | 59.905 | 45.833 | 12.71 | 13.08 | 37.71 | 3.67 |
1667 | 1745 | 5.045578 | ACTCCCATTTATTGACAGCTACACT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1730 | 1808 | 2.032550 | CCCTTATTGATCTGTTGCTGCG | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2322 | 2400 | 8.088981 | GGTACTATTATCCAGGTGTGTAGAATG | 58.911 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
2423 | 2502 | 3.870538 | TTGGAGGATGGGATGAGAATG | 57.129 | 47.619 | 0.00 | 0.00 | 0.00 | 2.67 |
2783 | 2877 | 4.766373 | ACCACACAATATGCTGTCATGAAA | 59.234 | 37.500 | 0.00 | 0.00 | 34.22 | 2.69 |
2915 | 3009 | 1.356938 | GGTCAAGCACCGTAGCTAAC | 58.643 | 55.000 | 0.00 | 2.15 | 45.89 | 2.34 |
2927 | 3021 | 6.455246 | GCACCGTAGCTAACTTAGTTTGATTC | 60.455 | 42.308 | 10.47 | 1.58 | 0.00 | 2.52 |
3059 | 3158 | 7.513371 | AGTTATTATCGAGTCCTTGGTCTAG | 57.487 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3203 | 3302 | 7.830201 | TCTTATTTGTGTTATGTTCCGGGTTAT | 59.170 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
3212 | 3311 | 3.768878 | TGTTCCGGGTTATGAAAATGGT | 58.231 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
3268 | 3367 | 3.181479 | GGCGTGGATAGTCAGTATGTCAA | 60.181 | 47.826 | 0.00 | 0.00 | 37.40 | 3.18 |
3299 | 3398 | 2.622064 | ATTACTCCGCTGTGATTCCC | 57.378 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
3455 | 3554 | 8.576442 | CAAACAAACTACCCTACAAGATCAAAT | 58.424 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3516 | 3615 | 0.238289 | ACGCAGCACAAAGTATGCAC | 59.762 | 50.000 | 0.00 | 0.00 | 45.92 | 4.57 |
3576 | 3675 | 1.075374 | TGCCAACCTCTGCCAATAACT | 59.925 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
3743 | 3845 | 0.738389 | CGTCCAGCAAGTTTGTGGTT | 59.262 | 50.000 | 10.90 | 0.00 | 33.75 | 3.67 |
4049 | 4151 | 4.928661 | TGAGCAAGCTTTATTCTTCGTC | 57.071 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 |
4363 | 4467 | 7.624360 | TTTCATATTTAGTGTGCCTTGGTAG | 57.376 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5029 | 5378 | 5.636965 | CCGGTATGATCAGAGCTAGAATTTG | 59.363 | 44.000 | 16.70 | 0.00 | 0.00 | 2.32 |
5227 | 5577 | 5.045797 | ACCTATTTCCTTACCACCTTCAGTC | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5670 | 6021 | 9.672086 | GCAGTGTGTGTCTTGTTATTAATAAAA | 57.328 | 29.630 | 9.48 | 1.55 | 0.00 | 1.52 |
5711 | 6066 | 2.233676 | CCTGCGTATAGTGATATGCCCA | 59.766 | 50.000 | 6.67 | 0.00 | 46.16 | 5.36 |
5882 | 6240 | 7.782049 | TCGTTCATGATTAGTGATAGAAGGTT | 58.218 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
6100 | 6509 | 1.134367 | CAGATGTTGATGCAGCCAAGG | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
6214 | 6623 | 0.603569 | GAGAAGCGAGGAGACCAACA | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
6215 | 6624 | 1.205893 | GAGAAGCGAGGAGACCAACAT | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
6275 | 6684 | 2.742372 | GAGCAACATGGTCGCCGT | 60.742 | 61.111 | 0.00 | 0.00 | 35.04 | 5.68 |
6406 | 6821 | 2.088950 | TAAACTTGCTACGTGGAGCC | 57.911 | 50.000 | 1.81 | 0.00 | 42.11 | 4.70 |
6495 | 6914 | 2.483188 | GCCGTCTTCCCGTGAGAAATAT | 60.483 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
6502 | 6921 | 7.244192 | GTCTTCCCGTGAGAAATATTTTTCAG | 58.756 | 38.462 | 18.85 | 13.38 | 43.09 | 3.02 |
6532 | 6952 | 2.124277 | AAAAGGGTTCGGAGGCATAC | 57.876 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
6620 | 7040 | 7.545615 | AGTGTTTCAACCATTTTTCTTCTTGTC | 59.454 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
6754 | 7180 | 5.839063 | AGGTAGAAAAAGGAAGGGGAAAAAG | 59.161 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
6855 | 7281 | 4.997395 | TCCATTGACGAGAAAAGGAGAAAG | 59.003 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
6941 | 7383 | 1.094785 | CCGAAATGGGCGTTTGATCT | 58.905 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
6942 | 7384 | 1.202177 | CCGAAATGGGCGTTTGATCTG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
7041 | 7495 | 4.065789 | AGAAATCACGTCCAGTCTTTTCC | 58.934 | 43.478 | 0.00 | 0.00 | 34.08 | 3.13 |
7085 | 7545 | 3.610791 | CTCGTTCTCGGCTCACGCA | 62.611 | 63.158 | 0.00 | 0.00 | 43.86 | 5.24 |
7107 | 7567 | 2.612200 | ACATGGCGTGTGTGTGTAC | 58.388 | 52.632 | 12.39 | 0.00 | 40.28 | 2.90 |
7127 | 7592 | 7.018826 | GTGTACAAATCGCTTTATTGTTGCTA | 58.981 | 34.615 | 0.00 | 0.00 | 38.22 | 3.49 |
7163 | 7628 | 3.763897 | TGTGTGCTTCACTAGATGCTAGA | 59.236 | 43.478 | 8.36 | 0.00 | 46.27 | 2.43 |
7164 | 7629 | 4.109050 | GTGTGCTTCACTAGATGCTAGAC | 58.891 | 47.826 | 8.36 | 0.00 | 43.30 | 2.59 |
7165 | 7630 | 4.019858 | TGTGCTTCACTAGATGCTAGACT | 58.980 | 43.478 | 8.36 | 0.00 | 43.30 | 3.24 |
7168 | 7633 | 5.518487 | GTGCTTCACTAGATGCTAGACTTTC | 59.482 | 44.000 | 8.36 | 0.00 | 43.30 | 2.62 |
7174 | 7639 | 8.764524 | TCACTAGATGCTAGACTTTCTTTTTC | 57.235 | 34.615 | 8.36 | 0.00 | 0.00 | 2.29 |
7196 | 7661 | 4.282703 | TCCCTTTGACACTTGACTAGTACC | 59.717 | 45.833 | 0.00 | 0.00 | 34.56 | 3.34 |
7197 | 7662 | 4.562963 | CCCTTTGACACTTGACTAGTACCC | 60.563 | 50.000 | 0.00 | 0.00 | 34.56 | 3.69 |
7198 | 7663 | 4.039973 | CCTTTGACACTTGACTAGTACCCA | 59.960 | 45.833 | 0.00 | 0.00 | 34.56 | 4.51 |
7199 | 7664 | 5.280011 | CCTTTGACACTTGACTAGTACCCAT | 60.280 | 44.000 | 0.00 | 0.00 | 34.56 | 4.00 |
7200 | 7665 | 5.818678 | TTGACACTTGACTAGTACCCATT | 57.181 | 39.130 | 0.00 | 0.00 | 34.56 | 3.16 |
7201 | 7666 | 5.401531 | TGACACTTGACTAGTACCCATTC | 57.598 | 43.478 | 0.00 | 0.00 | 34.56 | 2.67 |
7202 | 7667 | 4.082408 | TGACACTTGACTAGTACCCATTCG | 60.082 | 45.833 | 0.00 | 0.00 | 34.56 | 3.34 |
7203 | 7668 | 3.830755 | ACACTTGACTAGTACCCATTCGT | 59.169 | 43.478 | 0.00 | 0.00 | 34.56 | 3.85 |
7204 | 7669 | 4.282703 | ACACTTGACTAGTACCCATTCGTT | 59.717 | 41.667 | 0.00 | 0.00 | 34.56 | 3.85 |
7205 | 7670 | 4.863131 | CACTTGACTAGTACCCATTCGTTC | 59.137 | 45.833 | 0.00 | 0.00 | 34.56 | 3.95 |
7206 | 7671 | 4.771054 | ACTTGACTAGTACCCATTCGTTCT | 59.229 | 41.667 | 0.00 | 0.00 | 34.56 | 3.01 |
7207 | 7672 | 5.948162 | ACTTGACTAGTACCCATTCGTTCTA | 59.052 | 40.000 | 0.00 | 0.00 | 34.56 | 2.10 |
7208 | 7673 | 6.435277 | ACTTGACTAGTACCCATTCGTTCTAA | 59.565 | 38.462 | 0.00 | 0.00 | 34.56 | 2.10 |
7209 | 7674 | 6.839124 | TGACTAGTACCCATTCGTTCTAAA | 57.161 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
7210 | 7675 | 7.230849 | TGACTAGTACCCATTCGTTCTAAAA | 57.769 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
7211 | 7676 | 7.844009 | TGACTAGTACCCATTCGTTCTAAAAT | 58.156 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
7212 | 7677 | 8.970020 | TGACTAGTACCCATTCGTTCTAAAATA | 58.030 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
7213 | 7678 | 9.460906 | GACTAGTACCCATTCGTTCTAAAATAG | 57.539 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
7214 | 7679 | 9.193806 | ACTAGTACCCATTCGTTCTAAAATAGA | 57.806 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
7216 | 7681 | 8.888579 | AGTACCCATTCGTTCTAAAATAGATG | 57.111 | 34.615 | 0.00 | 0.00 | 34.22 | 2.90 |
7217 | 7682 | 8.701895 | AGTACCCATTCGTTCTAAAATAGATGA | 58.298 | 33.333 | 0.00 | 0.00 | 34.22 | 2.92 |
7218 | 7683 | 7.787725 | ACCCATTCGTTCTAAAATAGATGAC | 57.212 | 36.000 | 0.00 | 0.00 | 34.22 | 3.06 |
7219 | 7684 | 7.565680 | ACCCATTCGTTCTAAAATAGATGACT | 58.434 | 34.615 | 0.00 | 0.00 | 34.22 | 3.41 |
7220 | 7685 | 7.711339 | ACCCATTCGTTCTAAAATAGATGACTC | 59.289 | 37.037 | 0.00 | 0.00 | 34.22 | 3.36 |
7221 | 7686 | 7.096023 | CCCATTCGTTCTAAAATAGATGACTCG | 60.096 | 40.741 | 0.00 | 0.00 | 34.22 | 4.18 |
7222 | 7687 | 7.648112 | CCATTCGTTCTAAAATAGATGACTCGA | 59.352 | 37.037 | 0.00 | 0.00 | 34.22 | 4.04 |
7223 | 7688 | 7.966157 | TTCGTTCTAAAATAGATGACTCGAC | 57.034 | 36.000 | 0.00 | 0.00 | 34.22 | 4.20 |
7224 | 7689 | 7.317842 | TCGTTCTAAAATAGATGACTCGACT | 57.682 | 36.000 | 0.00 | 0.00 | 34.22 | 4.18 |
7225 | 7690 | 7.759465 | TCGTTCTAAAATAGATGACTCGACTT | 58.241 | 34.615 | 0.00 | 0.00 | 34.22 | 3.01 |
7226 | 7691 | 8.242053 | TCGTTCTAAAATAGATGACTCGACTTT | 58.758 | 33.333 | 0.00 | 0.00 | 34.22 | 2.66 |
7227 | 7692 | 8.314635 | CGTTCTAAAATAGATGACTCGACTTTG | 58.685 | 37.037 | 0.00 | 0.00 | 34.22 | 2.77 |
7228 | 7693 | 9.141400 | GTTCTAAAATAGATGACTCGACTTTGT | 57.859 | 33.333 | 0.00 | 0.00 | 34.22 | 2.83 |
7230 | 7695 | 9.784680 | TCTAAAATAGATGACTCGACTTTGTAC | 57.215 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
7231 | 7696 | 9.790389 | CTAAAATAGATGACTCGACTTTGTACT | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
7238 | 7703 | 9.490379 | AGATGACTCGACTTTGTACTTATTTTT | 57.510 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
14 | 15 | 4.497291 | TGTGGTCCTAGTCACTGTTTTT | 57.503 | 40.909 | 0.00 | 0.00 | 35.15 | 1.94 |
15 | 16 | 4.706842 | ATGTGGTCCTAGTCACTGTTTT | 57.293 | 40.909 | 0.00 | 0.00 | 35.15 | 2.43 |
16 | 17 | 7.676683 | ATATATGTGGTCCTAGTCACTGTTT | 57.323 | 36.000 | 0.00 | 0.00 | 35.15 | 2.83 |
17 | 18 | 7.565398 | AGAATATATGTGGTCCTAGTCACTGTT | 59.435 | 37.037 | 0.00 | 0.00 | 35.15 | 3.16 |
18 | 19 | 7.069986 | AGAATATATGTGGTCCTAGTCACTGT | 58.930 | 38.462 | 0.00 | 2.72 | 35.15 | 3.55 |
19 | 20 | 7.531857 | AGAATATATGTGGTCCTAGTCACTG | 57.468 | 40.000 | 0.00 | 0.00 | 35.15 | 3.66 |
20 | 21 | 7.785028 | TGAAGAATATATGTGGTCCTAGTCACT | 59.215 | 37.037 | 8.77 | 0.00 | 35.15 | 3.41 |
21 | 22 | 7.868415 | GTGAAGAATATATGTGGTCCTAGTCAC | 59.132 | 40.741 | 0.00 | 0.00 | 34.71 | 3.67 |
22 | 23 | 7.015292 | GGTGAAGAATATATGTGGTCCTAGTCA | 59.985 | 40.741 | 0.00 | 0.00 | 0.00 | 3.41 |
23 | 24 | 7.233757 | AGGTGAAGAATATATGTGGTCCTAGTC | 59.766 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
24 | 25 | 7.076446 | AGGTGAAGAATATATGTGGTCCTAGT | 58.924 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
25 | 26 | 7.453126 | AGAGGTGAAGAATATATGTGGTCCTAG | 59.547 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
26 | 27 | 7.306013 | AGAGGTGAAGAATATATGTGGTCCTA | 58.694 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
27 | 28 | 6.146760 | AGAGGTGAAGAATATATGTGGTCCT | 58.853 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
87 | 88 | 7.093552 | CCAAGATGAGGAATATCGGACTCTAAT | 60.094 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
151 | 152 | 6.045318 | CACTAGATGTGTTTAGATCACCAGG | 58.955 | 44.000 | 0.00 | 0.00 | 41.53 | 4.45 |
155 | 156 | 7.916450 | GTCTACCACTAGATGTGTTTAGATCAC | 59.084 | 40.741 | 0.00 | 0.00 | 44.81 | 3.06 |
200 | 205 | 5.774690 | ACTACATCCAACCAACATGAACATT | 59.225 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
299 | 306 | 1.589803 | GGTTGTCAGTGGCGTAAACT | 58.410 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
355 | 362 | 8.552034 | CGTCAACTAACTCTGATCTTTCTTTTT | 58.448 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
356 | 363 | 7.926555 | TCGTCAACTAACTCTGATCTTTCTTTT | 59.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
357 | 364 | 7.382759 | GTCGTCAACTAACTCTGATCTTTCTTT | 59.617 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
358 | 365 | 6.864165 | GTCGTCAACTAACTCTGATCTTTCTT | 59.136 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
359 | 366 | 6.016192 | TGTCGTCAACTAACTCTGATCTTTCT | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
360 | 367 | 6.088350 | GTGTCGTCAACTAACTCTGATCTTTC | 59.912 | 42.308 | 0.00 | 0.00 | 0.00 | 2.62 |
361 | 368 | 5.921408 | GTGTCGTCAACTAACTCTGATCTTT | 59.079 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
362 | 369 | 5.462405 | GTGTCGTCAACTAACTCTGATCTT | 58.538 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
382 | 389 | 1.788308 | CGTACGACCATGAAAACGTGT | 59.212 | 47.619 | 10.44 | 0.00 | 39.28 | 4.49 |
483 | 493 | 5.406649 | AGAAGAAAATGAGAGACAGCGTAG | 58.593 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
585 | 600 | 3.315418 | GAGGTGAACTCGAAAGTGGTAC | 58.685 | 50.000 | 0.00 | 0.00 | 36.29 | 3.34 |
586 | 601 | 3.655276 | GAGGTGAACTCGAAAGTGGTA | 57.345 | 47.619 | 0.00 | 0.00 | 36.29 | 3.25 |
630 | 650 | 3.751175 | TGTAGCCTTTCAGCACAATACAC | 59.249 | 43.478 | 0.00 | 0.00 | 34.23 | 2.90 |
781 | 806 | 1.304617 | GGCTGGGAAGGAAGGAAGG | 59.695 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
782 | 807 | 1.078143 | CGGCTGGGAAGGAAGGAAG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
783 | 808 | 1.838073 | GACGGCTGGGAAGGAAGGAA | 61.838 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
784 | 809 | 2.203938 | ACGGCTGGGAAGGAAGGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
1064 | 1093 | 2.902486 | TCATGTATCAGATCCAGCTCCC | 59.098 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1126 | 1160 | 6.409524 | AAATGAAAACAATTCCAGAGAGCA | 57.590 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
1129 | 1163 | 9.965824 | GTTAGAAAATGAAAACAATTCCAGAGA | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.10 |
1135 | 1169 | 8.275632 | GCACTGGTTAGAAAATGAAAACAATTC | 58.724 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
1162 | 1201 | 2.265904 | GGAACCGCCCAACTCAACC | 61.266 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
1164 | 1203 | 0.178975 | AATGGAACCGCCCAACTCAA | 60.179 | 50.000 | 0.00 | 0.00 | 40.04 | 3.02 |
1190 | 1232 | 5.417894 | TCAAAGAGAAACGATGGAGCTAGTA | 59.582 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1191 | 1233 | 4.220821 | TCAAAGAGAAACGATGGAGCTAGT | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1192 | 1234 | 4.748892 | TCAAAGAGAAACGATGGAGCTAG | 58.251 | 43.478 | 0.00 | 0.00 | 0.00 | 3.42 |
1202 | 1244 | 3.575630 | TCTGACGGATCAAAGAGAAACG | 58.424 | 45.455 | 0.00 | 0.00 | 33.30 | 3.60 |
1425 | 1473 | 1.369091 | GGAGCACGCACGGATCAAAT | 61.369 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1486 | 1534 | 1.927174 | CTGGGTCGAACTAATTCAGCG | 59.073 | 52.381 | 0.00 | 0.00 | 34.14 | 5.18 |
1525 | 1603 | 3.365969 | GGTAGGACGGCAAAACTCAATTG | 60.366 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
1730 | 1808 | 0.310543 | TCATGGTTCGCAAACAGCAC | 59.689 | 50.000 | 0.00 | 0.00 | 46.13 | 4.40 |
2055 | 2133 | 6.804295 | CGCTAAGATAAGCAAGGACTATACTG | 59.196 | 42.308 | 0.00 | 0.00 | 42.91 | 2.74 |
2294 | 2372 | 4.627015 | ACACACCTGGATAATAGTACCCA | 58.373 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
2423 | 2502 | 3.257393 | CATTCGATCCAGCATAGTAGCC | 58.743 | 50.000 | 0.00 | 0.00 | 34.23 | 3.93 |
2927 | 3021 | 7.563888 | TTGGCTCTTCATCATTTAAGATCTG | 57.436 | 36.000 | 0.00 | 0.00 | 31.60 | 2.90 |
3059 | 3158 | 3.944087 | AGCAGTTCACCCTAGAATTGAC | 58.056 | 45.455 | 3.79 | 0.00 | 37.40 | 3.18 |
3203 | 3302 | 9.555727 | GGACTATAAGCAGTATAACCATTTTCA | 57.444 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3212 | 3311 | 7.255381 | GGAACGACTGGACTATAAGCAGTATAA | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 0.98 |
3268 | 3367 | 3.134804 | AGCGGAGTAATATGGCTCTTTGT | 59.865 | 43.478 | 6.71 | 0.00 | 32.67 | 2.83 |
3299 | 3398 | 0.389948 | GTGTAGAAGGGTCCTGCACG | 60.390 | 60.000 | 0.00 | 0.00 | 37.47 | 5.34 |
3434 | 3533 | 7.832685 | GGGTAATTTGATCTTGTAGGGTAGTTT | 59.167 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
3455 | 3554 | 3.953612 | CAGCATGCTTATTGGAAGGGTAA | 59.046 | 43.478 | 19.98 | 0.00 | 0.00 | 2.85 |
3516 | 3615 | 0.107361 | GATCCTTTGGTGGTACCCGG | 60.107 | 60.000 | 10.07 | 0.00 | 37.50 | 5.73 |
3576 | 3675 | 9.806203 | CTTATTTGCAAACTTTGATGATGGATA | 57.194 | 29.630 | 15.41 | 0.00 | 0.00 | 2.59 |
3743 | 3845 | 5.572885 | GCTTCCTTTCCCTTGGTTAGTATGA | 60.573 | 44.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3906 | 4008 | 0.478072 | TCTGCTCCTGGGCTCAAAAA | 59.522 | 50.000 | 8.32 | 0.00 | 0.00 | 1.94 |
3907 | 4009 | 0.700564 | ATCTGCTCCTGGGCTCAAAA | 59.299 | 50.000 | 8.32 | 0.00 | 0.00 | 2.44 |
4342 | 4446 | 5.527582 | GTCCTACCAAGGCACACTAAATATG | 59.472 | 44.000 | 0.00 | 0.00 | 43.31 | 1.78 |
4893 | 5242 | 3.001330 | GTCGAAATTGAGGATTAGGCACG | 59.999 | 47.826 | 0.00 | 0.00 | 0.00 | 5.34 |
4959 | 5308 | 3.451178 | GCAATACCTCTTGAGTGTCCCTA | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
5029 | 5378 | 7.011857 | GTCAAGATAATTGACCAACAGAGATCC | 59.988 | 40.741 | 9.12 | 0.00 | 42.07 | 3.36 |
5227 | 5577 | 5.448225 | CCATGACAAAGAACATGAGGAATCG | 60.448 | 44.000 | 0.00 | 0.00 | 44.28 | 3.34 |
5415 | 5766 | 5.929992 | CGTCCAGTTATGAGTCCAAACTTAA | 59.070 | 40.000 | 4.84 | 0.00 | 35.28 | 1.85 |
5670 | 6021 | 7.033185 | CGCAGGTAATAAAATTTAGCAAACCT | 58.967 | 34.615 | 0.00 | 0.00 | 35.23 | 3.50 |
5726 | 6081 | 3.640498 | TCCATGATGCCACAAAGTGAAAA | 59.360 | 39.130 | 0.00 | 0.00 | 35.23 | 2.29 |
6100 | 6509 | 0.240411 | CCTTTGCTCTGCTCACTTGC | 59.760 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
6214 | 6623 | 2.865119 | TCAACATCTGCTGTCACCAT | 57.135 | 45.000 | 0.00 | 0.00 | 36.98 | 3.55 |
6215 | 6624 | 2.865119 | ATCAACATCTGCTGTCACCA | 57.135 | 45.000 | 0.00 | 0.00 | 36.98 | 4.17 |
6275 | 6684 | 3.701205 | TCTTGGCTGTATCAAGCTTCA | 57.299 | 42.857 | 0.00 | 0.00 | 43.06 | 3.02 |
6406 | 6821 | 5.932883 | CAGGATGATTGACCATCTATCAGTG | 59.067 | 44.000 | 8.52 | 3.67 | 40.73 | 3.66 |
6523 | 6943 | 1.228367 | CCAGCCATGGTATGCCTCC | 60.228 | 63.158 | 14.67 | 0.00 | 42.17 | 4.30 |
6532 | 6952 | 3.495806 | GGAGAATTCTCTACCAGCCATGG | 60.496 | 52.174 | 29.64 | 7.63 | 46.12 | 3.66 |
6620 | 7040 | 4.203828 | CGACGACAACAGAAGAAACAATG | 58.796 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
6855 | 7281 | 1.139256 | GGAGATCTCCGGTCCCTTTTC | 59.861 | 57.143 | 25.78 | 0.00 | 40.36 | 2.29 |
6999 | 7453 | 3.133003 | TCTCTCCATCGATCAAAACCCTC | 59.867 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
7003 | 7457 | 6.481984 | GTGATTTCTCTCCATCGATCAAAAC | 58.518 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
7041 | 7495 | 2.124570 | CATGTGGCCTCCCTTCCG | 60.125 | 66.667 | 3.32 | 0.00 | 0.00 | 4.30 |
7104 | 7564 | 7.110216 | CGATAGCAACAATAAAGCGATTTGTAC | 59.890 | 37.037 | 9.29 | 0.00 | 33.44 | 2.90 |
7105 | 7565 | 7.123190 | CGATAGCAACAATAAAGCGATTTGTA | 58.877 | 34.615 | 9.29 | 0.00 | 33.44 | 2.41 |
7107 | 7567 | 5.965334 | ACGATAGCAACAATAAAGCGATTTG | 59.035 | 36.000 | 9.29 | 0.00 | 42.67 | 2.32 |
7163 | 7628 | 6.210584 | TCAAGTGTCAAAGGGAAAAAGAAAGT | 59.789 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
7164 | 7629 | 6.531594 | GTCAAGTGTCAAAGGGAAAAAGAAAG | 59.468 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
7165 | 7630 | 6.210584 | AGTCAAGTGTCAAAGGGAAAAAGAAA | 59.789 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
7168 | 7633 | 5.582689 | AGTCAAGTGTCAAAGGGAAAAAG | 57.417 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
7174 | 7639 | 4.562963 | GGGTACTAGTCAAGTGTCAAAGGG | 60.563 | 50.000 | 0.00 | 0.00 | 39.39 | 3.95 |
7196 | 7661 | 7.648112 | TCGAGTCATCTATTTTAGAACGAATGG | 59.352 | 37.037 | 0.00 | 0.00 | 38.50 | 3.16 |
7197 | 7662 | 8.473016 | GTCGAGTCATCTATTTTAGAACGAATG | 58.527 | 37.037 | 0.00 | 0.00 | 38.50 | 2.67 |
7198 | 7663 | 8.407064 | AGTCGAGTCATCTATTTTAGAACGAAT | 58.593 | 33.333 | 0.00 | 0.00 | 38.50 | 3.34 |
7199 | 7664 | 7.759465 | AGTCGAGTCATCTATTTTAGAACGAA | 58.241 | 34.615 | 0.00 | 0.00 | 38.50 | 3.85 |
7200 | 7665 | 7.317842 | AGTCGAGTCATCTATTTTAGAACGA | 57.682 | 36.000 | 0.00 | 0.00 | 38.50 | 3.85 |
7201 | 7666 | 7.972623 | AAGTCGAGTCATCTATTTTAGAACG | 57.027 | 36.000 | 0.00 | 0.00 | 38.50 | 3.95 |
7202 | 7667 | 9.141400 | ACAAAGTCGAGTCATCTATTTTAGAAC | 57.859 | 33.333 | 0.00 | 0.00 | 38.50 | 3.01 |
7204 | 7669 | 9.784680 | GTACAAAGTCGAGTCATCTATTTTAGA | 57.215 | 33.333 | 0.00 | 0.00 | 39.50 | 2.10 |
7205 | 7670 | 9.790389 | AGTACAAAGTCGAGTCATCTATTTTAG | 57.210 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
7212 | 7677 | 9.490379 | AAAAATAAGTACAAAGTCGAGTCATCT | 57.510 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.