Multiple sequence alignment - TraesCS3B01G300600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G300600 chr3B 100.000 6642 0 0 1 6642 482251976 482258617 0.000000e+00 12266.0
1 TraesCS3B01G300600 chr3D 91.827 4013 181 56 200 4138 371091880 371095819 0.000000e+00 5457.0
2 TraesCS3B01G300600 chr3D 89.050 895 45 16 4173 5033 371095823 371096698 0.000000e+00 1061.0
3 TraesCS3B01G300600 chr3D 85.912 866 69 29 5049 5875 371096825 371097676 0.000000e+00 874.0
4 TraesCS3B01G300600 chr3D 89.114 542 49 6 6090 6631 383533036 383533567 0.000000e+00 665.0
5 TraesCS3B01G300600 chr3D 86.765 544 62 6 6089 6631 34726316 34726850 1.230000e-166 597.0
6 TraesCS3B01G300600 chr3D 86.680 518 60 5 6090 6607 21593788 21594296 3.480000e-157 566.0
7 TraesCS3B01G300600 chr3D 87.402 254 30 2 1 253 371091626 371091878 2.340000e-74 291.0
8 TraesCS3B01G300600 chr3D 97.619 126 3 0 5859 5984 371097693 371097818 4.030000e-52 217.0
9 TraesCS3B01G300600 chr3D 97.297 37 1 0 5979 6015 371097866 371097902 5.560000e-06 63.9
10 TraesCS3B01G300600 chr3A 91.726 2937 144 39 516 3387 492035494 492038396 0.000000e+00 3986.0
11 TraesCS3B01G300600 chr3A 86.713 1573 91 61 4173 5676 492039108 492040631 0.000000e+00 1639.0
12 TraesCS3B01G300600 chr3A 91.045 737 19 17 3422 4138 492038395 492039104 0.000000e+00 952.0
13 TraesCS3B01G300600 chr3A 88.933 506 50 6 1 502 492034521 492035024 2.630000e-173 619.0
14 TraesCS3B01G300600 chr3A 89.846 325 16 5 5675 5982 492040682 492041006 1.040000e-107 401.0
15 TraesCS3B01G300600 chr3A 97.297 37 1 0 5979 6015 492041050 492041086 5.560000e-06 63.9
16 TraesCS3B01G300600 chr1B 89.338 544 47 6 6089 6631 614499132 614498599 0.000000e+00 673.0
17 TraesCS3B01G300600 chr1B 86.424 523 60 7 6087 6608 478719283 478718771 4.500000e-156 562.0
18 TraesCS3B01G300600 chr1B 86.111 288 21 11 6089 6374 528360562 528360832 6.510000e-75 292.0
19 TraesCS3B01G300600 chr7D 89.154 544 45 9 6089 6631 58772381 58771851 0.000000e+00 665.0
20 TraesCS3B01G300600 chr4A 88.909 541 51 5 6091 6631 618681325 618680794 0.000000e+00 658.0
21 TraesCS3B01G300600 chr6B 87.569 547 57 6 6085 6631 552247935 552248470 2.030000e-174 623.0
22 TraesCS3B01G300600 chr6B 86.861 548 68 3 6088 6631 566557628 566557081 1.580000e-170 610.0
23 TraesCS3B01G300600 chr6B 87.138 311 31 4 6091 6401 647831742 647831441 1.770000e-90 344.0
24 TraesCS3B01G300600 chr6A 82.692 208 27 4 6088 6295 611074667 611074469 6.850000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G300600 chr3B 482251976 482258617 6641 False 12266.000000 12266 100.000000 1 6642 1 chr3B.!!$F1 6641
1 TraesCS3B01G300600 chr3D 371091626 371097902 6276 False 1327.316667 5457 91.517833 1 6015 6 chr3D.!!$F4 6014
2 TraesCS3B01G300600 chr3D 383533036 383533567 531 False 665.000000 665 89.114000 6090 6631 1 chr3D.!!$F3 541
3 TraesCS3B01G300600 chr3D 34726316 34726850 534 False 597.000000 597 86.765000 6089 6631 1 chr3D.!!$F2 542
4 TraesCS3B01G300600 chr3D 21593788 21594296 508 False 566.000000 566 86.680000 6090 6607 1 chr3D.!!$F1 517
5 TraesCS3B01G300600 chr3A 492034521 492041086 6565 False 1276.816667 3986 90.926667 1 6015 6 chr3A.!!$F1 6014
6 TraesCS3B01G300600 chr1B 614498599 614499132 533 True 673.000000 673 89.338000 6089 6631 1 chr1B.!!$R2 542
7 TraesCS3B01G300600 chr1B 478718771 478719283 512 True 562.000000 562 86.424000 6087 6608 1 chr1B.!!$R1 521
8 TraesCS3B01G300600 chr7D 58771851 58772381 530 True 665.000000 665 89.154000 6089 6631 1 chr7D.!!$R1 542
9 TraesCS3B01G300600 chr4A 618680794 618681325 531 True 658.000000 658 88.909000 6091 6631 1 chr4A.!!$R1 540
10 TraesCS3B01G300600 chr6B 552247935 552248470 535 False 623.000000 623 87.569000 6085 6631 1 chr6B.!!$F1 546
11 TraesCS3B01G300600 chr6B 566557081 566557628 547 True 610.000000 610 86.861000 6088 6631 1 chr6B.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 320 0.387622 CCAAAACAGACGCATGCTGG 60.388 55.000 17.13 10.02 37.69 4.85 F
1310 1843 0.256464 TCCGGGTTCTCTCTCCTCTC 59.744 60.000 0.00 0.00 0.00 3.20 F
2774 3347 0.035056 CTCGGCCATCTTCCCTTGTT 60.035 55.000 2.24 0.00 0.00 2.83 F
2775 3348 0.035439 TCGGCCATCTTCCCTTGTTC 60.035 55.000 2.24 0.00 0.00 3.18 F
2914 3489 0.773644 AACAGGTGCTGGAGTTGGAT 59.226 50.000 0.00 0.00 35.51 3.41 F
3112 3708 1.078528 TGTCTGGATCTGGACGGGT 59.921 57.895 11.70 0.00 35.45 5.28 F
4263 4907 1.129437 GGTGCGAGAGAAGAAATGTGC 59.871 52.381 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2334 0.388659 AGAGAGCCTTAGATGCAGCG 59.611 55.0 0.00 0.0 0.00 5.18 R
2878 3453 0.110373 GTTGCGGTGCTAAAAGACGG 60.110 55.0 0.00 0.0 0.00 4.79 R
3952 4596 0.031515 TAGATCCGGGGAAGCTCCAA 60.032 55.0 0.00 0.0 38.64 3.53 R
4547 5249 0.107703 GGCACCGTCATGAATGAGGA 60.108 55.0 13.21 0.0 43.34 3.71 R
4828 5544 1.557269 GGCTGACAGGTGGACCTCAT 61.557 60.0 4.26 0.0 46.65 2.90 R
5082 5912 0.817634 TTTGGAGTTGGTGCCTCGTG 60.818 55.0 0.00 0.0 0.00 4.35 R
6060 7089 0.029567 GGAGAGACTATGCACGGTCG 59.970 60.0 13.06 0.0 37.52 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 3.785859 GCCATGGTGAGAGGGCGA 61.786 66.667 14.67 0.00 36.58 5.54
80 82 1.005924 GAGGAAATGGGGTGGATGTGT 59.994 52.381 0.00 0.00 0.00 3.72
116 118 1.841556 AAGTGGAGGACAAGGGCGA 60.842 57.895 0.00 0.00 0.00 5.54
117 119 1.415672 AAGTGGAGGACAAGGGCGAA 61.416 55.000 0.00 0.00 0.00 4.70
178 180 1.811645 AACCGAAAATGGGTTGCGGG 61.812 55.000 10.16 0.00 45.74 6.13
210 212 1.058284 GACGCACGTCCGTTTATGC 59.942 57.895 5.75 0.00 42.24 3.14
222 224 1.374378 TTTATGCCGACGCGTTGGA 60.374 52.632 42.80 28.91 38.08 3.53
239 241 0.459585 GGACCGCGCTTTATGTCTGA 60.460 55.000 5.56 0.00 0.00 3.27
251 253 6.456853 CGCTTTATGTCTGATTCGATCCAAAA 60.457 38.462 0.00 0.00 0.00 2.44
252 254 6.688813 GCTTTATGTCTGATTCGATCCAAAAC 59.311 38.462 0.00 0.00 0.00 2.43
254 256 5.808042 ATGTCTGATTCGATCCAAAACAG 57.192 39.130 6.48 6.48 0.00 3.16
259 314 1.872388 TTCGATCCAAAACAGACGCA 58.128 45.000 0.00 0.00 0.00 5.24
260 315 2.093306 TCGATCCAAAACAGACGCAT 57.907 45.000 0.00 0.00 0.00 4.73
262 317 1.791555 CGATCCAAAACAGACGCATGC 60.792 52.381 7.91 7.91 0.00 4.06
265 320 0.387622 CCAAAACAGACGCATGCTGG 60.388 55.000 17.13 10.02 37.69 4.85
278 333 3.512516 GCTGGCAGAATGGGTCGC 61.513 66.667 20.86 0.00 35.86 5.19
296 351 1.153449 CGCGATTGGAGTTGCCCTA 60.153 57.895 0.00 0.00 34.97 3.53
297 352 1.154205 CGCGATTGGAGTTGCCCTAG 61.154 60.000 0.00 0.00 34.97 3.02
301 356 2.803492 CGATTGGAGTTGCCCTAGCTAC 60.803 54.545 0.00 0.00 43.96 3.58
338 393 6.051074 TCATACACATTATGGAGTCTGCAAG 58.949 40.000 0.00 0.00 0.00 4.01
505 562 2.247790 GCTGCCTATGCGGTATTGG 58.752 57.895 2.43 2.43 46.11 3.16
506 563 0.535102 GCTGCCTATGCGGTATTGGT 60.535 55.000 8.16 0.00 46.11 3.67
507 564 1.270625 GCTGCCTATGCGGTATTGGTA 60.271 52.381 8.16 3.27 46.11 3.25
508 565 2.615493 GCTGCCTATGCGGTATTGGTAT 60.615 50.000 8.16 0.00 46.11 2.73
552 1065 0.461870 TGGCGATCCCATCAAACTCG 60.462 55.000 0.00 0.00 39.18 4.18
576 1089 2.943690 TCATCCGTTCGTTCAAAACCAA 59.056 40.909 0.00 0.00 0.00 3.67
590 1103 0.535335 AACCAAATCGGCGCTCTCTA 59.465 50.000 7.64 0.00 39.03 2.43
637 1150 3.161450 ACCGGCCAGCGACCATAT 61.161 61.111 0.00 0.00 0.00 1.78
724 1237 1.929836 GCTCGAATGACCAAGCTGTAG 59.070 52.381 0.00 0.00 0.00 2.74
725 1238 1.929836 CTCGAATGACCAAGCTGTAGC 59.070 52.381 0.00 0.00 42.49 3.58
835 1365 3.064931 CCTTCGTAGACAAGAAACCCAC 58.935 50.000 0.00 0.00 34.32 4.61
836 1366 2.825861 TCGTAGACAAGAAACCCACC 57.174 50.000 0.00 0.00 0.00 4.61
837 1367 1.000060 TCGTAGACAAGAAACCCACCG 60.000 52.381 0.00 0.00 0.00 4.94
1036 1566 0.547712 TTCTTCCTCCTCCCACCCTG 60.548 60.000 0.00 0.00 0.00 4.45
1158 1689 2.185608 GAAGGAGCCTGCCTCGAC 59.814 66.667 0.00 0.00 41.71 4.20
1304 1835 2.026905 GCAGATCTCCGGGTTCTCTCT 61.027 57.143 0.00 0.00 0.00 3.10
1310 1843 0.256464 TCCGGGTTCTCTCTCCTCTC 59.744 60.000 0.00 0.00 0.00 3.20
1340 1873 2.028930 TCGTGCTCTTCTTCCTTCCTTC 60.029 50.000 0.00 0.00 0.00 3.46
1417 1950 2.029849 GCGTGCGTTTGATTTTTGGTTT 59.970 40.909 0.00 0.00 0.00 3.27
1548 2084 4.424566 TGGCCGCCGTCGTCTAAC 62.425 66.667 4.58 0.00 0.00 2.34
1554 2090 1.131126 CCGCCGTCGTCTAACTTTCTA 59.869 52.381 0.00 0.00 0.00 2.10
1593 2133 2.350772 CGGTTTGGTTGATCTGTGCTTC 60.351 50.000 0.00 0.00 0.00 3.86
1600 2140 1.511850 TGATCTGTGCTTCGGTGTTG 58.488 50.000 0.00 0.00 0.00 3.33
1610 2150 1.126846 CTTCGGTGTTGCGATTCTGAC 59.873 52.381 0.00 0.00 0.00 3.51
1624 2164 5.007626 GCGATTCTGACTATGCCAATTTACA 59.992 40.000 0.00 0.00 0.00 2.41
1654 2198 1.599240 GGCTCCTGATGATTCGGCC 60.599 63.158 0.00 0.00 0.00 6.13
1668 2212 4.162320 TGATTCGGCCTTCTTAATCTCTGT 59.838 41.667 0.00 0.00 31.16 3.41
1669 2213 5.362717 TGATTCGGCCTTCTTAATCTCTGTA 59.637 40.000 0.00 0.00 31.16 2.74
1768 2312 1.635663 GCTGTTTGGTCCGGATGACG 61.636 60.000 7.81 2.78 45.46 4.35
1790 2334 1.131315 GCATCCTGCCGTTTCTTCTTC 59.869 52.381 0.00 0.00 37.42 2.87
1830 2374 3.040147 TCGTGTGAAGATTGGAGTTCC 57.960 47.619 0.00 0.00 0.00 3.62
1839 2383 3.690460 AGATTGGAGTTCCATGGTTCAC 58.310 45.455 12.58 7.47 46.97 3.18
1841 2385 0.762418 TGGAGTTCCATGGTTCACGT 59.238 50.000 12.58 0.00 42.01 4.49
1865 2409 3.237433 CGAAGTGTTTTCGTGTTCTTTGC 59.763 43.478 1.43 0.00 37.18 3.68
1937 2481 1.993370 CGATCCGGTGTGTTCTTCTTC 59.007 52.381 0.00 0.00 0.00 2.87
1949 2493 6.146184 GTGTGTTCTTCTTCTCATTTCATCGA 59.854 38.462 0.00 0.00 0.00 3.59
1951 2495 5.639506 TGTTCTTCTTCTCATTTCATCGACC 59.360 40.000 0.00 0.00 0.00 4.79
1958 2502 3.260632 TCTCATTTCATCGACCACTCCAA 59.739 43.478 0.00 0.00 0.00 3.53
1978 2522 2.867472 CGGCCGGTTTGCTACTTG 59.133 61.111 20.10 0.00 0.00 3.16
1999 2543 4.088634 TGCATTTTGTAGCAGATCCCTTT 58.911 39.130 0.00 0.00 35.51 3.11
2018 2563 2.684001 TGTCCGGTCAAATCGCTAAT 57.316 45.000 0.00 0.00 0.00 1.73
2020 2565 2.167693 TGTCCGGTCAAATCGCTAATCT 59.832 45.455 0.00 0.00 0.00 2.40
2022 2567 2.167693 TCCGGTCAAATCGCTAATCTGT 59.832 45.455 0.00 0.00 0.00 3.41
2120 2665 3.095347 GCCGGCCTCGAGATCCTTT 62.095 63.158 18.11 0.00 39.00 3.11
2135 2680 3.063510 TCCTTTAGAGACGACGAAGGA 57.936 47.619 0.00 5.56 42.53 3.36
2141 2686 4.790861 GACGACGAAGGACCGGCC 62.791 72.222 0.00 3.58 33.11 6.13
2360 2914 2.942796 CGTGCTGCTACAGTGGGGA 61.943 63.158 0.00 0.00 33.43 4.81
2444 2998 4.803426 CAGCGTCGGCAGACCCTC 62.803 72.222 11.54 1.31 44.28 4.30
2561 3121 1.975407 GTCCTCGTCGTCCTTCCCA 60.975 63.158 0.00 0.00 0.00 4.37
2596 3156 3.537206 GAGACGCCAACCACCAGCT 62.537 63.158 0.00 0.00 0.00 4.24
2607 3167 3.953775 ACCAGCTTCCCCACCACG 61.954 66.667 0.00 0.00 0.00 4.94
2647 3208 1.057514 CGTCTCGTCTCGTCTCGTG 59.942 63.158 0.00 0.00 0.00 4.35
2769 3342 4.918201 CCGCTCGGCCATCTTCCC 62.918 72.222 2.24 0.00 0.00 3.97
2770 3343 3.854669 CGCTCGGCCATCTTCCCT 61.855 66.667 2.24 0.00 0.00 4.20
2772 3345 1.821332 GCTCGGCCATCTTCCCTTG 60.821 63.158 2.24 0.00 0.00 3.61
2773 3346 1.604378 CTCGGCCATCTTCCCTTGT 59.396 57.895 2.24 0.00 0.00 3.16
2774 3347 0.035056 CTCGGCCATCTTCCCTTGTT 60.035 55.000 2.24 0.00 0.00 2.83
2775 3348 0.035439 TCGGCCATCTTCCCTTGTTC 60.035 55.000 2.24 0.00 0.00 3.18
2899 3474 1.398451 CGTCTTTTAGCACCGCAACAG 60.398 52.381 0.00 0.00 0.00 3.16
2914 3489 0.773644 AACAGGTGCTGGAGTTGGAT 59.226 50.000 0.00 0.00 35.51 3.41
2921 3496 3.149196 GTGCTGGAGTTGGATGAAAGAA 58.851 45.455 0.00 0.00 0.00 2.52
2961 3539 6.760770 CCAATTTGAAGCAAGTAGGTTTTTCA 59.239 34.615 0.00 0.00 38.24 2.69
2967 3545 8.419076 TGAAGCAAGTAGGTTTTTCAAATTTC 57.581 30.769 0.00 0.00 38.24 2.17
2968 3546 7.494298 TGAAGCAAGTAGGTTTTTCAAATTTCC 59.506 33.333 0.00 0.00 38.24 3.13
2969 3547 6.883744 AGCAAGTAGGTTTTTCAAATTTCCA 58.116 32.000 0.00 0.00 0.00 3.53
2971 3549 6.536941 GCAAGTAGGTTTTTCAAATTTCCACA 59.463 34.615 0.00 0.00 0.00 4.17
2990 3582 9.970243 TTTCCACAAATATTTTACATACGTACG 57.030 29.630 15.01 15.01 0.00 3.67
2991 3583 8.700722 TCCACAAATATTTTACATACGTACGT 57.299 30.769 25.98 25.98 0.00 3.57
2992 3584 9.794685 TCCACAAATATTTTACATACGTACGTA 57.205 29.630 28.62 28.62 34.87 3.57
2993 3585 9.833894 CCACAAATATTTTACATACGTACGTAC 57.166 33.333 28.99 15.90 33.01 3.67
2994 3586 9.833894 CACAAATATTTTACATACGTACGTACC 57.166 33.333 28.99 2.84 33.01 3.34
3112 3708 1.078528 TGTCTGGATCTGGACGGGT 59.921 57.895 11.70 0.00 35.45 5.28
3113 3709 1.257750 TGTCTGGATCTGGACGGGTG 61.258 60.000 11.70 0.00 35.45 4.61
3114 3710 2.187946 CTGGATCTGGACGGGTGC 59.812 66.667 0.00 0.00 0.00 5.01
3115 3711 3.723235 CTGGATCTGGACGGGTGCG 62.723 68.421 0.00 0.00 0.00 5.34
3116 3712 3.771160 GGATCTGGACGGGTGCGT 61.771 66.667 0.00 0.00 0.00 5.24
3256 3858 5.422970 TGCCATATCTGCTCAAATTCCTTTT 59.577 36.000 0.00 0.00 0.00 2.27
3332 3937 5.651139 AGTAGTAGATTTCAGCTTCCGTGTA 59.349 40.000 0.00 0.00 0.00 2.90
3345 3950 4.880748 GTGTAAGCGCGATGATGC 57.119 55.556 12.10 0.00 0.00 3.91
3352 3957 2.090400 AGCGCGATGATGCTATGAAT 57.910 45.000 12.10 0.00 40.28 2.57
3353 3958 1.998315 AGCGCGATGATGCTATGAATC 59.002 47.619 12.10 0.00 40.28 2.52
3358 3963 2.278354 CGATGATGCTATGAATCTCGCG 59.722 50.000 0.00 0.00 0.00 5.87
3359 3964 3.505836 GATGATGCTATGAATCTCGCGA 58.494 45.455 9.26 9.26 0.00 5.87
3374 3979 1.369091 CGCGACATCAAGGGAAAGGG 61.369 60.000 0.00 0.00 0.00 3.95
3399 4004 2.064581 ACCGGTAGGGCAGATGGTC 61.065 63.158 4.49 0.00 43.47 4.02
3400 4005 2.063979 CCGGTAGGGCAGATGGTCA 61.064 63.158 0.00 0.00 0.00 4.02
3401 4006 1.410850 CCGGTAGGGCAGATGGTCAT 61.411 60.000 0.00 0.00 0.00 3.06
3404 4009 1.346068 GGTAGGGCAGATGGTCATCTC 59.654 57.143 10.24 6.28 45.78 2.75
3442 4050 1.693606 TGTGCACATCTCTCAACTCCA 59.306 47.619 17.42 0.00 0.00 3.86
3467 4075 6.128172 ACGATCTGCTTTTCTTTTCTGTATGG 60.128 38.462 0.00 0.00 0.00 2.74
3487 4095 2.158623 GGATGGATGGGCATCAACAGTA 60.159 50.000 0.00 0.00 39.54 2.74
3502 4110 4.021719 TCAACAGTAGTAGTTGTAGCACCC 60.022 45.833 6.03 0.00 44.97 4.61
3504 4112 2.167900 CAGTAGTAGTTGTAGCACCCCC 59.832 54.545 0.00 0.00 0.00 5.40
3904 4536 4.363990 ACGACTCGCAGCTGGTGG 62.364 66.667 17.12 8.86 0.00 4.61
4096 4740 3.999663 GCTCCAAGTATGCATCCATCTAC 59.000 47.826 0.19 0.00 32.85 2.59
4097 4741 4.262808 GCTCCAAGTATGCATCCATCTACT 60.263 45.833 0.19 0.00 32.85 2.57
4098 4742 5.047021 GCTCCAAGTATGCATCCATCTACTA 60.047 44.000 0.19 0.00 32.85 1.82
4099 4743 6.351711 GCTCCAAGTATGCATCCATCTACTAT 60.352 42.308 0.19 0.00 32.85 2.12
4100 4744 7.175347 TCCAAGTATGCATCCATCTACTATC 57.825 40.000 0.19 0.00 32.85 2.08
4102 4746 7.455953 TCCAAGTATGCATCCATCTACTATCTT 59.544 37.037 0.19 0.00 32.85 2.40
4144 4788 3.727738 TCCGATCGGATCTAGCAGT 57.272 52.632 32.59 0.00 39.76 4.40
4145 4789 2.853235 TCCGATCGGATCTAGCAGTA 57.147 50.000 32.59 6.76 39.76 2.74
4146 4790 2.701107 TCCGATCGGATCTAGCAGTAG 58.299 52.381 32.59 2.64 39.76 2.57
4147 4791 1.131504 CCGATCGGATCTAGCAGTAGC 59.868 57.143 30.62 0.00 38.20 3.58
4148 4792 4.372531 CCGATCGGATCTAGCAGTAGCG 62.373 59.091 30.62 0.00 41.42 4.26
4160 4804 2.678324 GCAGTAGCGTTTCTGAAGAGT 58.322 47.619 10.01 0.00 34.02 3.24
4161 4805 3.834610 GCAGTAGCGTTTCTGAAGAGTA 58.165 45.455 10.01 0.00 34.02 2.59
4162 4806 4.425520 GCAGTAGCGTTTCTGAAGAGTAT 58.574 43.478 10.01 0.00 34.02 2.12
4163 4807 4.501198 GCAGTAGCGTTTCTGAAGAGTATC 59.499 45.833 10.01 0.00 34.02 2.24
4164 4808 5.038033 CAGTAGCGTTTCTGAAGAGTATCC 58.962 45.833 0.00 0.00 32.19 2.59
4165 4809 4.705507 AGTAGCGTTTCTGAAGAGTATCCA 59.294 41.667 0.00 0.00 33.66 3.41
4166 4810 4.744795 AGCGTTTCTGAAGAGTATCCAT 57.255 40.909 0.00 0.00 33.66 3.41
4167 4811 4.437239 AGCGTTTCTGAAGAGTATCCATG 58.563 43.478 0.00 0.00 33.66 3.66
4168 4812 4.160439 AGCGTTTCTGAAGAGTATCCATGA 59.840 41.667 0.00 0.00 33.66 3.07
4169 4813 5.053145 GCGTTTCTGAAGAGTATCCATGAT 58.947 41.667 0.00 0.00 33.66 2.45
4170 4814 6.040955 AGCGTTTCTGAAGAGTATCCATGATA 59.959 38.462 0.00 0.00 33.66 2.15
4171 4815 6.701841 GCGTTTCTGAAGAGTATCCATGATAA 59.298 38.462 0.00 0.00 33.66 1.75
4263 4907 1.129437 GGTGCGAGAGAAGAAATGTGC 59.871 52.381 0.00 0.00 0.00 4.57
4276 4920 6.825721 AGAAGAAATGTGCCAAGAAGGTATAG 59.174 38.462 0.00 0.00 40.61 1.31
4442 5140 1.479323 GTGATTGATGGGCTGCAATGT 59.521 47.619 0.50 0.00 35.05 2.71
4443 5141 2.093869 GTGATTGATGGGCTGCAATGTT 60.094 45.455 0.50 0.00 35.05 2.71
4453 5151 8.143193 TGATGGGCTGCAATGTTAATTAATTAG 58.857 33.333 7.91 0.00 0.00 1.73
4538 5240 1.501337 CCATGATGACCCGTGATGCG 61.501 60.000 0.00 0.00 40.95 4.73
4547 5249 1.733041 CCGTGATGCGTCTTCGTGT 60.733 57.895 17.54 0.00 39.32 4.49
4656 5367 4.591072 CCTAACCTCAAGAATCTCCTAGGG 59.409 50.000 9.46 0.00 0.00 3.53
4678 5389 7.079048 AGGGTTAAGTAGATTGATCCATCTCT 58.921 38.462 12.35 7.52 0.00 3.10
4807 5523 9.654663 CTACTAGTAGTAGCCACAAAAGAAAAT 57.345 33.333 21.48 0.00 41.36 1.82
4809 5525 9.350951 ACTAGTAGTAGCCACAAAAGAAAATTT 57.649 29.630 0.00 0.00 0.00 1.82
4812 5528 6.478512 AGTAGCCACAAAAGAAAATTTCCA 57.521 33.333 1.57 0.00 0.00 3.53
4828 5544 3.963476 TTCCAAGGTCTCTTTGGGAAA 57.037 42.857 9.99 0.00 34.26 3.13
5077 5907 6.314018 TGCAAGTTTAATCTCTGCGTTAATG 58.686 36.000 12.15 0.00 0.00 1.90
5082 5912 6.258068 AGTTTAATCTCTGCGTTAATGGTAGC 59.742 38.462 0.00 0.00 0.00 3.58
5125 5958 8.522542 AATCTCCGAATCTTGTACTAGTAGTT 57.477 34.615 8.40 0.00 0.00 2.24
5173 6006 2.005370 ACTCCAGTGTTTAGTCCCGA 57.995 50.000 0.00 0.00 0.00 5.14
5189 6022 2.039216 TCCCGAAAGACTGCATGGTTAA 59.961 45.455 0.00 0.00 0.00 2.01
5207 6040 2.319136 AAGTCGTGCTTGTGGTGTTA 57.681 45.000 0.00 0.00 35.80 2.41
5247 6080 8.718102 TTATTTAAGCACCTATCAGAAGTGAC 57.282 34.615 3.40 0.00 34.75 3.67
5255 6098 6.459024 GCACCTATCAGAAGTGACAGTAGTAG 60.459 46.154 3.40 0.00 34.75 2.57
5289 6132 4.021104 TGTTTCTACAGTGTCTCCCATCAG 60.021 45.833 0.00 0.00 0.00 2.90
5291 6134 2.043115 TCTACAGTGTCTCCCATCAGGT 59.957 50.000 0.00 0.00 36.75 4.00
5293 6136 2.902608 ACAGTGTCTCCCATCAGGTTA 58.097 47.619 0.00 0.00 36.75 2.85
5295 6138 3.452627 ACAGTGTCTCCCATCAGGTTATC 59.547 47.826 0.00 0.00 36.75 1.75
5300 6143 2.365617 TCTCCCATCAGGTTATCGCTTC 59.634 50.000 0.00 0.00 36.75 3.86
5326 6169 3.857052 TCGGCACTAACATAAACCTCTG 58.143 45.455 0.00 0.00 0.00 3.35
5331 6174 4.563184 GCACTAACATAAACCTCTGTCTCG 59.437 45.833 0.00 0.00 0.00 4.04
5420 6267 2.477176 CGCAGAGGAGAGGAGACGG 61.477 68.421 0.00 0.00 0.00 4.79
5421 6268 1.077357 GCAGAGGAGAGGAGACGGA 60.077 63.158 0.00 0.00 0.00 4.69
5422 6269 1.381165 GCAGAGGAGAGGAGACGGAC 61.381 65.000 0.00 0.00 0.00 4.79
5424 6271 0.699399 AGAGGAGAGGAGACGGACAA 59.301 55.000 0.00 0.00 0.00 3.18
5426 6273 0.968393 AGGAGAGGAGACGGACAAGC 60.968 60.000 0.00 0.00 0.00 4.01
5427 6274 1.251527 GGAGAGGAGACGGACAAGCA 61.252 60.000 0.00 0.00 0.00 3.91
5453 6305 1.002069 ATGGGGATGTCATGTGTGGT 58.998 50.000 0.00 0.00 0.00 4.16
5454 6306 0.038021 TGGGGATGTCATGTGTGGTG 59.962 55.000 0.00 0.00 0.00 4.17
5457 6309 1.315257 GGATGTCATGTGTGGTGGCC 61.315 60.000 0.00 0.00 0.00 5.36
5458 6310 1.647545 GATGTCATGTGTGGTGGCCG 61.648 60.000 0.00 0.00 0.00 6.13
5459 6311 3.055719 GTCATGTGTGGTGGCCGG 61.056 66.667 0.00 0.00 0.00 6.13
5475 6327 2.432300 CGGGAGCGAGGGGTGTTAT 61.432 63.158 0.00 0.00 0.00 1.89
5554 6406 2.396590 TTGTAAATGGAGACGGAGGC 57.603 50.000 0.00 0.00 0.00 4.70
5560 6412 3.224324 GGAGACGGAGGCGGCATA 61.224 66.667 13.08 0.00 0.00 3.14
5601 6457 2.666190 GTGCTCGCCTTGCAGACA 60.666 61.111 0.00 0.00 41.41 3.41
5624 6480 6.071896 ACAAATGATGATGATGATGATGCCTC 60.072 38.462 0.00 0.00 0.00 4.70
5628 6484 0.702902 ATGATGATGATGCCTCCCCC 59.297 55.000 0.00 0.00 0.00 5.40
5629 6485 0.698542 TGATGATGATGCCTCCCCCA 60.699 55.000 0.00 0.00 0.00 4.96
5631 6487 1.432852 ATGATGATGCCTCCCCCAGG 61.433 60.000 0.00 0.00 46.82 4.45
5717 6647 4.161001 TCCTCGGTCTTGTAATTAGTTCCC 59.839 45.833 0.00 0.00 0.00 3.97
5755 6685 0.523072 CTTCAAACGACATGGGCCTG 59.477 55.000 4.53 3.00 0.00 4.85
5808 6751 1.649271 GGAACTGGGCCCTCCATGAT 61.649 60.000 25.70 1.52 46.01 2.45
5902 6878 3.975035 GCATTTCGTTTCCTTGTGTCTTC 59.025 43.478 0.00 0.00 0.00 2.87
5915 6891 1.980844 GTGTCTTCGCGAACGTCATTA 59.019 47.619 19.38 0.00 41.18 1.90
5986 7015 2.746277 CTACCCGTGGCAGGTTGC 60.746 66.667 3.52 0.00 44.08 4.17
6015 7044 0.868406 GTGAAACGAGGAGCAACTGG 59.132 55.000 0.00 0.00 0.00 4.00
6016 7045 0.468226 TGAAACGAGGAGCAACTGGT 59.532 50.000 0.00 0.00 0.00 4.00
6017 7046 1.134220 TGAAACGAGGAGCAACTGGTT 60.134 47.619 0.00 2.95 40.45 3.67
6018 7047 2.052782 AAACGAGGAGCAACTGGTTT 57.947 45.000 12.64 12.64 42.19 3.27
6019 7048 2.052782 AACGAGGAGCAACTGGTTTT 57.947 45.000 0.00 0.00 36.21 2.43
6020 7049 2.052782 ACGAGGAGCAACTGGTTTTT 57.947 45.000 0.00 0.00 0.00 1.94
6021 7050 3.202829 ACGAGGAGCAACTGGTTTTTA 57.797 42.857 0.00 0.00 0.00 1.52
6022 7051 2.876550 ACGAGGAGCAACTGGTTTTTAC 59.123 45.455 0.00 0.00 0.00 2.01
6023 7052 2.225727 CGAGGAGCAACTGGTTTTTACC 59.774 50.000 0.00 0.00 0.00 2.85
6024 7053 2.225727 GAGGAGCAACTGGTTTTTACCG 59.774 50.000 0.00 0.00 0.00 4.02
6025 7054 1.268625 GGAGCAACTGGTTTTTACCGG 59.731 52.381 0.00 0.00 41.83 5.28
6026 7055 0.671796 AGCAACTGGTTTTTACCGGC 59.328 50.000 0.00 0.00 39.75 6.13
6027 7056 0.671796 GCAACTGGTTTTTACCGGCT 59.328 50.000 0.00 0.00 39.75 5.52
6028 7057 1.881324 GCAACTGGTTTTTACCGGCTA 59.119 47.619 0.00 0.00 39.75 3.93
6029 7058 2.351060 GCAACTGGTTTTTACCGGCTAC 60.351 50.000 0.00 0.00 39.75 3.58
6030 7059 2.189594 ACTGGTTTTTACCGGCTACC 57.810 50.000 0.00 2.44 39.75 3.18
6031 7060 1.271543 ACTGGTTTTTACCGGCTACCC 60.272 52.381 0.00 0.00 39.75 3.69
6032 7061 0.038021 TGGTTTTTACCGGCTACCCC 59.962 55.000 0.00 0.00 0.00 4.95
6033 7062 0.038021 GGTTTTTACCGGCTACCCCA 59.962 55.000 0.00 0.00 0.00 4.96
6034 7063 1.547449 GGTTTTTACCGGCTACCCCAA 60.547 52.381 0.00 0.00 0.00 4.12
6035 7064 1.541147 GTTTTTACCGGCTACCCCAAC 59.459 52.381 0.00 0.00 0.00 3.77
6036 7065 0.038021 TTTTACCGGCTACCCCAACC 59.962 55.000 0.00 0.00 0.00 3.77
6037 7066 1.851065 TTTACCGGCTACCCCAACCC 61.851 60.000 0.00 0.00 0.00 4.11
6038 7067 3.559355 TACCGGCTACCCCAACCCA 62.559 63.158 0.00 0.00 0.00 4.51
6039 7068 4.109675 CCGGCTACCCCAACCCAG 62.110 72.222 0.00 0.00 0.00 4.45
6040 7069 4.109675 CGGCTACCCCAACCCAGG 62.110 72.222 0.00 0.00 0.00 4.45
6041 7070 4.442454 GGCTACCCCAACCCAGGC 62.442 72.222 0.00 0.00 0.00 4.85
6042 7071 4.796495 GCTACCCCAACCCAGGCG 62.796 72.222 0.00 0.00 0.00 5.52
6043 7072 4.796495 CTACCCCAACCCAGGCGC 62.796 72.222 0.00 0.00 0.00 6.53
6047 7076 4.351054 CCCAACCCAGGCGCTCTT 62.351 66.667 7.64 0.00 0.00 2.85
6048 7077 3.058160 CCAACCCAGGCGCTCTTG 61.058 66.667 7.64 3.58 0.00 3.02
6049 7078 2.032528 CAACCCAGGCGCTCTTGA 59.967 61.111 7.64 0.00 0.00 3.02
6050 7079 1.377725 CAACCCAGGCGCTCTTGAT 60.378 57.895 7.64 0.00 0.00 2.57
6051 7080 1.377725 AACCCAGGCGCTCTTGATG 60.378 57.895 7.64 1.73 0.00 3.07
6052 7081 2.129555 AACCCAGGCGCTCTTGATGT 62.130 55.000 7.64 2.33 0.00 3.06
6053 7082 2.110967 CCCAGGCGCTCTTGATGTG 61.111 63.158 7.64 0.00 0.00 3.21
6054 7083 2.110967 CCAGGCGCTCTTGATGTGG 61.111 63.158 7.64 0.00 0.00 4.17
6055 7084 2.437359 AGGCGCTCTTGATGTGGC 60.437 61.111 7.64 0.00 40.17 5.01
6056 7085 2.437359 GGCGCTCTTGATGTGGCT 60.437 61.111 7.64 0.00 37.48 4.75
6057 7086 2.467826 GGCGCTCTTGATGTGGCTC 61.468 63.158 7.64 0.00 37.48 4.70
6058 7087 1.449246 GCGCTCTTGATGTGGCTCT 60.449 57.895 0.00 0.00 0.00 4.09
6059 7088 1.703438 GCGCTCTTGATGTGGCTCTG 61.703 60.000 0.00 0.00 0.00 3.35
6060 7089 1.703438 CGCTCTTGATGTGGCTCTGC 61.703 60.000 0.00 0.00 0.00 4.26
6061 7090 1.703438 GCTCTTGATGTGGCTCTGCG 61.703 60.000 0.00 0.00 0.00 5.18
6062 7091 0.108472 CTCTTGATGTGGCTCTGCGA 60.108 55.000 0.00 0.00 0.00 5.10
6063 7092 0.390340 TCTTGATGTGGCTCTGCGAC 60.390 55.000 0.00 0.00 37.76 5.19
6064 7093 1.364626 CTTGATGTGGCTCTGCGACC 61.365 60.000 2.55 0.00 36.46 4.79
6065 7094 2.887568 GATGTGGCTCTGCGACCG 60.888 66.667 2.55 0.00 36.46 4.79
6066 7095 3.649277 GATGTGGCTCTGCGACCGT 62.649 63.158 2.55 0.00 36.46 4.83
6067 7096 3.939837 ATGTGGCTCTGCGACCGTG 62.940 63.158 2.55 0.00 36.46 4.94
6071 7100 2.202743 GCTCTGCGACCGTGCATA 60.203 61.111 0.00 0.00 45.26 3.14
6072 7101 2.233654 GCTCTGCGACCGTGCATAG 61.234 63.158 0.00 3.55 45.26 2.23
6073 7102 1.139734 CTCTGCGACCGTGCATAGT 59.860 57.895 0.00 0.00 45.26 2.12
6074 7103 0.867753 CTCTGCGACCGTGCATAGTC 60.868 60.000 8.60 8.60 45.26 2.59
6075 7104 1.139734 CTGCGACCGTGCATAGTCT 59.860 57.895 14.79 0.00 45.26 3.24
6076 7105 0.867753 CTGCGACCGTGCATAGTCTC 60.868 60.000 14.79 9.10 45.26 3.36
6077 7106 1.313091 TGCGACCGTGCATAGTCTCT 61.313 55.000 14.79 0.00 40.62 3.10
6078 7107 0.592754 GCGACCGTGCATAGTCTCTC 60.593 60.000 14.79 3.49 34.15 3.20
6079 7108 0.029567 CGACCGTGCATAGTCTCTCC 59.970 60.000 14.79 0.00 0.00 3.71
6080 7109 0.029567 GACCGTGCATAGTCTCTCCG 59.970 60.000 10.84 0.00 0.00 4.63
6081 7110 1.299468 CCGTGCATAGTCTCTCCGC 60.299 63.158 0.00 0.00 0.00 5.54
6082 7111 1.299468 CGTGCATAGTCTCTCCGCC 60.299 63.158 0.00 0.00 0.00 6.13
6083 7112 1.729470 CGTGCATAGTCTCTCCGCCT 61.729 60.000 0.00 0.00 0.00 5.52
6087 7116 1.537135 GCATAGTCTCTCCGCCTTCAC 60.537 57.143 0.00 0.00 0.00 3.18
6152 7194 5.037385 CACAGAGATTACACGTATGGTCAG 58.963 45.833 0.00 0.00 0.00 3.51
6153 7195 4.098044 ACAGAGATTACACGTATGGTCAGG 59.902 45.833 0.00 0.00 0.00 3.86
6154 7196 4.098044 CAGAGATTACACGTATGGTCAGGT 59.902 45.833 0.00 0.00 0.00 4.00
6155 7197 4.338682 AGAGATTACACGTATGGTCAGGTC 59.661 45.833 0.00 0.00 0.00 3.85
6156 7198 4.021229 AGATTACACGTATGGTCAGGTCA 58.979 43.478 0.00 0.00 0.00 4.02
6157 7199 3.581024 TTACACGTATGGTCAGGTCAC 57.419 47.619 0.00 0.00 0.00 3.67
6158 7200 0.606604 ACACGTATGGTCAGGTCACC 59.393 55.000 0.00 0.00 36.90 4.02
6235 7277 7.237055 ACAAGAGGTAAAACTACTATTCCACCT 59.763 37.037 0.00 0.00 37.85 4.00
6281 7323 6.068010 TGAAACATAGTCCACAAATGTCCTT 58.932 36.000 0.00 0.00 32.80 3.36
6326 7368 1.021390 AAAGATGAGAACAGCCGCCG 61.021 55.000 0.00 0.00 32.31 6.46
6366 7408 2.819019 CACCACCACATACAAAGATGCA 59.181 45.455 0.00 0.00 0.00 3.96
6477 7519 1.673033 CGACGCCTTCAACTTCATCCT 60.673 52.381 0.00 0.00 0.00 3.24
6555 7598 5.293569 GCAAGACAGTAAACACAACTACAGT 59.706 40.000 0.00 0.00 0.00 3.55
6631 7674 2.267961 GCCGGGTCCAAAGATCGT 59.732 61.111 2.18 0.00 0.00 3.73
6632 7675 1.814169 GCCGGGTCCAAAGATCGTC 60.814 63.158 2.18 0.00 0.00 4.20
6633 7676 1.898154 CCGGGTCCAAAGATCGTCT 59.102 57.895 0.00 0.00 0.00 4.18
6634 7677 0.179108 CCGGGTCCAAAGATCGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
6635 7678 0.818296 CGGGTCCAAAGATCGTCTCT 59.182 55.000 0.00 0.00 34.96 3.10
6636 7679 1.202313 CGGGTCCAAAGATCGTCTCTC 60.202 57.143 0.00 0.00 31.03 3.20
6637 7680 1.137282 GGGTCCAAAGATCGTCTCTCC 59.863 57.143 0.00 0.00 31.03 3.71
6638 7681 1.202313 GGTCCAAAGATCGTCTCTCCG 60.202 57.143 0.00 0.00 31.03 4.63
6639 7682 0.456221 TCCAAAGATCGTCTCTCCGC 59.544 55.000 0.00 0.00 31.03 5.54
6640 7683 0.528684 CCAAAGATCGTCTCTCCGCC 60.529 60.000 0.00 0.00 31.03 6.13
6641 7684 0.457851 CAAAGATCGTCTCTCCGCCT 59.542 55.000 0.00 0.00 31.03 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 4.171234 TCCATTCTCTCTCAAAACCCTCT 58.829 43.478 0.00 0.00 0.00 3.69
80 82 4.338710 GCCCCCGCCACACAGTAA 62.339 66.667 0.00 0.00 0.00 2.24
101 103 1.488705 ATGTTCGCCCTTGTCCTCCA 61.489 55.000 0.00 0.00 0.00 3.86
222 224 1.933853 GAATCAGACATAAAGCGCGGT 59.066 47.619 4.23 4.23 0.00 5.68
228 230 7.751732 TGTTTTGGATCGAATCAGACATAAAG 58.248 34.615 0.00 0.00 0.00 1.85
239 241 2.422597 TGCGTCTGTTTTGGATCGAAT 58.577 42.857 0.00 0.00 0.00 3.34
251 253 2.736579 TTCTGCCAGCATGCGTCTGT 62.737 55.000 13.01 0.00 31.97 3.41
252 254 1.374343 ATTCTGCCAGCATGCGTCTG 61.374 55.000 13.01 5.14 31.97 3.51
254 256 1.063649 CATTCTGCCAGCATGCGTC 59.936 57.895 13.01 5.99 31.97 5.19
259 314 1.452651 CGACCCATTCTGCCAGCAT 60.453 57.895 0.00 0.00 0.00 3.79
260 315 2.046023 CGACCCATTCTGCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
262 317 3.197790 CGCGACCCATTCTGCCAG 61.198 66.667 0.00 0.00 0.00 4.85
278 333 1.153449 TAGGGCAACTCCAATCGCG 60.153 57.895 0.00 0.00 36.21 5.87
552 1065 4.152759 TGGTTTTGAACGAACGGATGATAC 59.847 41.667 0.00 0.00 0.00 2.24
576 1089 4.299978 GAATTAACTAGAGAGCGCCGATT 58.700 43.478 2.29 0.00 0.00 3.34
590 1103 3.935203 CCAGATGAGTGTGCGAATTAACT 59.065 43.478 0.00 0.00 0.00 2.24
634 1147 2.855209 GAGTGCATCTCCTGGCATAT 57.145 50.000 0.00 0.00 42.75 1.78
660 1173 1.866237 CGTTATGCTGTGCCACGTT 59.134 52.632 0.00 0.00 0.00 3.99
724 1237 9.373750 GCAAACTAAATTGAGAAAGAAATTTGC 57.626 29.630 8.31 8.31 39.90 3.68
725 1238 9.571804 CGCAAACTAAATTGAGAAAGAAATTTG 57.428 29.630 0.00 0.00 36.80 2.32
1117 1648 1.449246 GCCGCTGAGCAATCACTCT 60.449 57.895 4.88 0.00 37.58 3.24
1295 1826 1.569072 AGAGGGAGAGGAGAGAGAACC 59.431 57.143 0.00 0.00 0.00 3.62
1304 1835 1.840737 CACGAAGAAGAGGGAGAGGA 58.159 55.000 0.00 0.00 0.00 3.71
1310 1843 1.548269 AGAAGAGCACGAAGAAGAGGG 59.452 52.381 0.00 0.00 0.00 4.30
1340 1873 2.169832 ACAGAAACAGACACGGATGG 57.830 50.000 0.00 0.00 0.00 3.51
1417 1950 1.953686 CCAAAGGAAAACAGAAGCCGA 59.046 47.619 0.00 0.00 0.00 5.54
1548 2084 7.065204 CCGAAGAAGAAGGGAAAATCTAGAAAG 59.935 40.741 0.00 0.00 0.00 2.62
1554 2090 4.642466 ACCGAAGAAGAAGGGAAAATCT 57.358 40.909 0.00 0.00 0.00 2.40
1593 2133 1.990799 TAGTCAGAATCGCAACACCG 58.009 50.000 0.00 0.00 0.00 4.94
1600 2140 4.558538 AAATTGGCATAGTCAGAATCGC 57.441 40.909 0.00 0.00 0.00 4.58
1610 2150 3.434637 GCAACCGTGTAAATTGGCATAG 58.565 45.455 0.00 0.00 0.00 2.23
1790 2334 0.388659 AGAGAGCCTTAGATGCAGCG 59.611 55.000 0.00 0.00 0.00 5.18
1830 2374 0.790207 CACTTCGGACGTGAACCATG 59.210 55.000 8.81 0.00 34.35 3.66
1839 2383 0.925466 ACACGAAAACACTTCGGACG 59.075 50.000 11.18 0.00 45.34 4.79
1841 2385 2.896168 AGAACACGAAAACACTTCGGA 58.104 42.857 11.18 0.00 45.34 4.55
1937 2481 3.251479 TGGAGTGGTCGATGAAATGAG 57.749 47.619 0.00 0.00 0.00 2.90
1972 2516 5.220931 GGGATCTGCTACAAAATGCAAGTAG 60.221 44.000 12.09 12.09 38.81 2.57
1978 2522 4.082026 ACAAAGGGATCTGCTACAAAATGC 60.082 41.667 0.00 0.00 0.00 3.56
1986 2530 0.830648 CCGGACAAAGGGATCTGCTA 59.169 55.000 0.00 0.00 0.00 3.49
1999 2543 2.167693 AGATTAGCGATTTGACCGGACA 59.832 45.455 9.46 5.04 0.00 4.02
2018 2563 1.289066 GTACCTGCAGCGACACAGA 59.711 57.895 8.66 0.00 35.90 3.41
2020 2565 2.034048 TTGGTACCTGCAGCGACACA 62.034 55.000 14.36 5.86 0.00 3.72
2022 2567 0.602638 CTTTGGTACCTGCAGCGACA 60.603 55.000 14.36 1.09 0.00 4.35
2120 2665 0.742281 CCGGTCCTTCGTCGTCTCTA 60.742 60.000 0.00 0.00 0.00 2.43
2276 2830 2.113433 CGTGTCGGAGGAGTCGGAT 61.113 63.158 0.00 0.00 34.78 4.18
2297 2851 3.646715 CCGGTGGAGCTTGGGGAA 61.647 66.667 0.00 0.00 0.00 3.97
2351 2905 0.751643 GCTTGTTGTGTCCCCACTGT 60.752 55.000 0.00 0.00 42.34 3.55
2360 2914 2.590575 CGGGACCGCTTGTTGTGT 60.591 61.111 0.00 0.00 0.00 3.72
2444 2998 2.745884 TGGATCTTGCCGTTGCCG 60.746 61.111 0.00 0.00 36.33 5.69
2496 3056 3.089874 CGGAGGAGGGGGCATCAA 61.090 66.667 0.00 0.00 0.00 2.57
2633 3194 1.134877 AGGATACACGAGACGAGACGA 60.135 52.381 0.00 0.00 41.41 4.20
2767 3340 1.873591 CGACTCCAACAAGAACAAGGG 59.126 52.381 0.00 0.00 0.00 3.95
2768 3341 2.287915 CACGACTCCAACAAGAACAAGG 59.712 50.000 0.00 0.00 0.00 3.61
2769 3342 2.287915 CCACGACTCCAACAAGAACAAG 59.712 50.000 0.00 0.00 0.00 3.16
2770 3343 2.285083 CCACGACTCCAACAAGAACAA 58.715 47.619 0.00 0.00 0.00 2.83
2772 3345 1.202604 TCCCACGACTCCAACAAGAAC 60.203 52.381 0.00 0.00 0.00 3.01
2773 3346 1.124780 TCCCACGACTCCAACAAGAA 58.875 50.000 0.00 0.00 0.00 2.52
2774 3347 1.275291 GATCCCACGACTCCAACAAGA 59.725 52.381 0.00 0.00 0.00 3.02
2775 3348 1.726853 GATCCCACGACTCCAACAAG 58.273 55.000 0.00 0.00 0.00 3.16
2814 3387 1.352404 CGAACGCCGAAAACACCAA 59.648 52.632 0.00 0.00 41.76 3.67
2876 3451 1.670083 GCGGTGCTAAAAGACGGGT 60.670 57.895 0.00 0.00 0.00 5.28
2877 3452 1.231958 TTGCGGTGCTAAAAGACGGG 61.232 55.000 0.00 0.00 0.00 5.28
2878 3453 0.110373 GTTGCGGTGCTAAAAGACGG 60.110 55.000 0.00 0.00 0.00 4.79
2879 3454 0.584396 TGTTGCGGTGCTAAAAGACG 59.416 50.000 0.00 0.00 0.00 4.18
2899 3474 1.815003 CTTTCATCCAACTCCAGCACC 59.185 52.381 0.00 0.00 0.00 5.01
2921 3496 7.616528 TTCAAATTGGAGGAAAAGAAAGGAT 57.383 32.000 0.00 0.00 0.00 3.24
2967 3545 9.833894 GTACGTACGTATGTAAAATATTTGTGG 57.166 33.333 29.05 0.00 32.82 4.17
2968 3546 9.833894 GGTACGTACGTATGTAAAATATTTGTG 57.166 33.333 29.05 0.00 32.82 3.33
3256 3858 1.340991 GCTGAAATTGGCCCTGGAGTA 60.341 52.381 0.00 0.00 0.00 2.59
3307 3912 5.651139 ACACGGAAGCTGAAATCTACTACTA 59.349 40.000 0.00 0.00 0.00 1.82
3332 3937 1.869774 TTCATAGCATCATCGCGCTT 58.130 45.000 5.56 0.00 39.70 4.68
3336 3941 2.029003 GCGAGATTCATAGCATCATCGC 59.971 50.000 0.24 0.24 38.68 4.58
3340 3945 2.034558 TGTCGCGAGATTCATAGCATCA 59.965 45.455 10.24 0.00 45.19 3.07
3341 3946 2.666026 TGTCGCGAGATTCATAGCATC 58.334 47.619 10.24 0.00 45.19 3.91
3345 3950 3.672397 CCTTGATGTCGCGAGATTCATAG 59.328 47.826 20.59 13.72 45.19 2.23
3352 3957 0.606096 TTTCCCTTGATGTCGCGAGA 59.394 50.000 10.24 9.54 38.16 4.04
3353 3958 1.002366 CTTTCCCTTGATGTCGCGAG 58.998 55.000 10.24 0.00 0.00 5.03
3358 3963 3.682999 GCTACTCCCTTTCCCTTGATGTC 60.683 52.174 0.00 0.00 0.00 3.06
3359 3964 2.239907 GCTACTCCCTTTCCCTTGATGT 59.760 50.000 0.00 0.00 0.00 3.06
3374 3979 2.017559 CTGCCCTACCGGTGCTACTC 62.018 65.000 19.93 1.78 0.00 2.59
3434 4042 2.839486 AAAGCAGATCGTGGAGTTGA 57.161 45.000 0.00 0.00 0.00 3.18
3442 4050 6.128172 CCATACAGAAAAGAAAAGCAGATCGT 60.128 38.462 0.00 0.00 0.00 3.73
3467 4075 2.062971 ACTGTTGATGCCCATCCATC 57.937 50.000 5.86 0.00 41.51 3.51
3487 4095 1.896122 GCGGGGGTGCTACAACTACT 61.896 60.000 0.00 0.00 0.00 2.57
3519 4130 2.691011 GCTGCTACTACCAGAACTAGCT 59.309 50.000 0.00 0.00 34.00 3.32
3520 4131 2.691011 AGCTGCTACTACCAGAACTAGC 59.309 50.000 0.00 0.00 33.56 3.42
3521 4132 4.993029 AAGCTGCTACTACCAGAACTAG 57.007 45.455 0.90 0.00 32.03 2.57
3522 4133 4.620803 GCAAAGCTGCTACTACCAGAACTA 60.621 45.833 0.90 0.00 45.74 2.24
3574 4187 0.951040 GGGAGACTCTTGCCACAACG 60.951 60.000 1.74 0.00 0.00 4.10
3952 4596 0.031515 TAGATCCGGGGAAGCTCCAA 60.032 55.000 0.00 0.00 38.64 3.53
4096 4740 9.167311 AGTTTTTACAGGAGCACAATAAGATAG 57.833 33.333 0.00 0.00 0.00 2.08
4097 4741 8.946085 CAGTTTTTACAGGAGCACAATAAGATA 58.054 33.333 0.00 0.00 0.00 1.98
4098 4742 7.665559 TCAGTTTTTACAGGAGCACAATAAGAT 59.334 33.333 0.00 0.00 0.00 2.40
4099 4743 6.995686 TCAGTTTTTACAGGAGCACAATAAGA 59.004 34.615 0.00 0.00 0.00 2.10
4100 4744 7.202016 TCAGTTTTTACAGGAGCACAATAAG 57.798 36.000 0.00 0.00 0.00 1.73
4102 4746 7.094377 GGATTCAGTTTTTACAGGAGCACAATA 60.094 37.037 0.00 0.00 0.00 1.90
4104 4748 5.009610 GGATTCAGTTTTTACAGGAGCACAA 59.990 40.000 0.00 0.00 0.00 3.33
4105 4749 4.518970 GGATTCAGTTTTTACAGGAGCACA 59.481 41.667 0.00 0.00 0.00 4.57
4106 4750 4.378459 CGGATTCAGTTTTTACAGGAGCAC 60.378 45.833 0.00 0.00 0.00 4.40
4138 4782 3.506455 ACTCTTCAGAAACGCTACTGCTA 59.494 43.478 0.00 0.00 36.97 3.49
4140 4784 2.678324 ACTCTTCAGAAACGCTACTGC 58.322 47.619 0.00 0.00 34.57 4.40
4141 4785 5.038033 GGATACTCTTCAGAAACGCTACTG 58.962 45.833 0.00 0.00 35.72 2.74
4142 4786 4.705507 TGGATACTCTTCAGAAACGCTACT 59.294 41.667 0.00 0.00 37.61 2.57
4143 4787 4.995124 TGGATACTCTTCAGAAACGCTAC 58.005 43.478 0.00 0.00 37.61 3.58
4144 4788 5.359860 TCATGGATACTCTTCAGAAACGCTA 59.640 40.000 0.00 0.00 37.61 4.26
4145 4789 4.160439 TCATGGATACTCTTCAGAAACGCT 59.840 41.667 0.00 0.00 37.61 5.07
4146 4790 4.433615 TCATGGATACTCTTCAGAAACGC 58.566 43.478 0.00 0.00 37.61 4.84
4147 4791 7.923344 AGTTATCATGGATACTCTTCAGAAACG 59.077 37.037 0.00 0.00 37.61 3.60
4151 4795 8.861086 GGTTAGTTATCATGGATACTCTTCAGA 58.139 37.037 0.00 0.00 37.61 3.27
4152 4796 8.865090 AGGTTAGTTATCATGGATACTCTTCAG 58.135 37.037 0.00 0.00 37.61 3.02
4153 4797 8.642432 CAGGTTAGTTATCATGGATACTCTTCA 58.358 37.037 0.00 0.00 37.61 3.02
4154 4798 8.643324 ACAGGTTAGTTATCATGGATACTCTTC 58.357 37.037 0.00 0.00 37.61 2.87
4155 4799 8.424918 CACAGGTTAGTTATCATGGATACTCTT 58.575 37.037 0.00 0.00 37.61 2.85
4156 4800 7.565398 ACACAGGTTAGTTATCATGGATACTCT 59.435 37.037 0.00 0.00 37.61 3.24
4157 4801 7.727181 ACACAGGTTAGTTATCATGGATACTC 58.273 38.462 0.00 0.00 37.61 2.59
4158 4802 7.565398 AGACACAGGTTAGTTATCATGGATACT 59.435 37.037 0.00 0.00 37.61 2.12
4159 4803 7.727181 AGACACAGGTTAGTTATCATGGATAC 58.273 38.462 0.00 0.00 0.00 2.24
4160 4804 7.914427 AGACACAGGTTAGTTATCATGGATA 57.086 36.000 0.00 0.00 0.00 2.59
4161 4805 6.814954 AGACACAGGTTAGTTATCATGGAT 57.185 37.500 0.00 0.00 0.00 3.41
4162 4806 6.406370 CAAGACACAGGTTAGTTATCATGGA 58.594 40.000 0.00 0.00 0.00 3.41
4163 4807 5.065218 GCAAGACACAGGTTAGTTATCATGG 59.935 44.000 0.00 0.00 0.00 3.66
4164 4808 5.877012 AGCAAGACACAGGTTAGTTATCATG 59.123 40.000 0.00 0.00 0.00 3.07
4165 4809 5.877012 CAGCAAGACACAGGTTAGTTATCAT 59.123 40.000 0.00 0.00 0.00 2.45
4166 4810 5.237815 CAGCAAGACACAGGTTAGTTATCA 58.762 41.667 0.00 0.00 0.00 2.15
4167 4811 4.093556 GCAGCAAGACACAGGTTAGTTATC 59.906 45.833 0.00 0.00 0.00 1.75
4168 4812 4.003648 GCAGCAAGACACAGGTTAGTTAT 58.996 43.478 0.00 0.00 0.00 1.89
4169 4813 3.181459 TGCAGCAAGACACAGGTTAGTTA 60.181 43.478 0.00 0.00 0.00 2.24
4170 4814 2.222027 GCAGCAAGACACAGGTTAGTT 58.778 47.619 0.00 0.00 0.00 2.24
4171 4815 1.140852 TGCAGCAAGACACAGGTTAGT 59.859 47.619 0.00 0.00 0.00 2.24
4263 4907 6.757897 TGATTGTTTGCTATACCTTCTTGG 57.242 37.500 0.00 0.00 42.93 3.61
4276 4920 8.538409 AAACTAGGAATTGATTGATTGTTTGC 57.462 30.769 0.00 0.00 0.00 3.68
4442 5140 7.229907 CCCCGCTTTAAGGCTCTAATTAATTAA 59.770 37.037 8.05 0.00 0.00 1.40
4443 5141 6.713450 CCCCGCTTTAAGGCTCTAATTAATTA 59.287 38.462 8.05 7.66 0.00 1.40
4453 5151 2.118313 TTAACCCCGCTTTAAGGCTC 57.882 50.000 8.05 0.00 0.00 4.70
4538 5240 3.614616 GTCATGAATGAGGACACGAAGAC 59.385 47.826 0.00 0.00 37.51 3.01
4547 5249 0.107703 GGCACCGTCATGAATGAGGA 60.108 55.000 13.21 0.00 43.34 3.71
4761 5475 4.234530 AGTACGTACCAGTTGAGTTGTC 57.765 45.455 21.80 0.00 0.00 3.18
4807 5523 3.963476 TTCCCAAAGAGACCTTGGAAA 57.037 42.857 3.15 0.00 33.85 3.13
4809 5525 3.397618 TCATTTCCCAAAGAGACCTTGGA 59.602 43.478 3.15 0.00 31.91 3.53
4812 5528 3.399305 ACCTCATTTCCCAAAGAGACCTT 59.601 43.478 0.00 0.00 0.00 3.50
4828 5544 1.557269 GGCTGACAGGTGGACCTCAT 61.557 60.000 4.26 0.00 46.65 2.90
4910 5626 2.765108 AGCGACAGATACATGTCTCG 57.235 50.000 0.00 3.63 46.04 4.04
4950 5668 2.029666 CAAGCTCTATCCGGGCGG 59.970 66.667 0.00 0.00 0.00 6.13
5020 5739 9.231297 CTAATTCCAACAGATAGAAGGTGAAAA 57.769 33.333 0.00 0.00 0.00 2.29
5025 5744 6.313519 TGCTAATTCCAACAGATAGAAGGT 57.686 37.500 0.00 0.00 0.00 3.50
5069 5899 0.928229 CCTCGTGCTACCATTAACGC 59.072 55.000 0.00 0.00 36.04 4.84
5077 5907 2.033194 GTTGGTGCCTCGTGCTACC 61.033 63.158 11.30 11.30 42.00 3.18
5082 5912 0.817634 TTTGGAGTTGGTGCCTCGTG 60.818 55.000 0.00 0.00 0.00 4.35
5125 5958 8.146053 TGTTACAAGATTCCTTTCTCCAGATA 57.854 34.615 0.00 0.00 0.00 1.98
5173 6006 3.498397 CACGACTTAACCATGCAGTCTTT 59.502 43.478 0.00 0.00 35.70 2.52
5189 6022 1.411246 TCTAACACCACAAGCACGACT 59.589 47.619 0.00 0.00 0.00 4.18
5237 6070 4.399219 AGCACTACTACTGTCACTTCTGA 58.601 43.478 0.00 0.00 0.00 3.27
5238 6071 4.775058 AGCACTACTACTGTCACTTCTG 57.225 45.455 0.00 0.00 0.00 3.02
5241 6074 4.585162 AGACAAGCACTACTACTGTCACTT 59.415 41.667 3.61 0.00 0.00 3.16
5243 6076 4.506886 AGACAAGCACTACTACTGTCAC 57.493 45.455 3.61 0.00 0.00 3.67
5244 6077 5.163447 ACAAAGACAAGCACTACTACTGTCA 60.163 40.000 3.61 0.00 0.00 3.58
5246 6079 5.277857 ACAAAGACAAGCACTACTACTGT 57.722 39.130 0.00 0.00 0.00 3.55
5247 6080 6.480320 AGAAACAAAGACAAGCACTACTACTG 59.520 38.462 0.00 0.00 0.00 2.74
5255 6098 5.163754 ACACTGTAGAAACAAAGACAAGCAC 60.164 40.000 0.00 0.00 34.49 4.40
5300 6143 2.203800 TTATGTTAGTGCCGAGCTCG 57.796 50.000 29.06 29.06 39.44 5.03
5326 6169 2.159184 TCTGCATTCCAGATCACGAGAC 60.159 50.000 0.00 0.00 45.44 3.36
5420 6267 2.795329 TCCCCATCTTCTTTGCTTGTC 58.205 47.619 0.00 0.00 0.00 3.18
5421 6268 2.978156 TCCCCATCTTCTTTGCTTGT 57.022 45.000 0.00 0.00 0.00 3.16
5422 6269 3.094572 ACATCCCCATCTTCTTTGCTTG 58.905 45.455 0.00 0.00 0.00 4.01
5424 6271 2.309755 TGACATCCCCATCTTCTTTGCT 59.690 45.455 0.00 0.00 0.00 3.91
5426 6273 4.097437 CACATGACATCCCCATCTTCTTTG 59.903 45.833 0.00 0.00 0.00 2.77
5427 6274 4.264083 ACACATGACATCCCCATCTTCTTT 60.264 41.667 0.00 0.00 0.00 2.52
5457 6309 2.432300 ATAACACCCCTCGCTCCCG 61.432 63.158 0.00 0.00 0.00 5.14
5458 6310 1.146263 CATAACACCCCTCGCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
5459 6311 0.252197 AACATAACACCCCTCGCTCC 59.748 55.000 0.00 0.00 0.00 4.70
5475 6327 4.577283 CCGGTTTTGTTTCTTCTCCTAACA 59.423 41.667 0.00 0.00 0.00 2.41
5601 6457 5.419155 GGAGGCATCATCATCATCATCATTT 59.581 40.000 0.00 0.00 0.00 2.32
5624 6480 0.471780 AAGGAAAAACAGCCTGGGGG 60.472 55.000 0.00 0.00 34.00 5.40
5628 6484 1.860326 CGCAAAAGGAAAAACAGCCTG 59.140 47.619 0.00 0.00 34.00 4.85
5629 6485 1.202521 CCGCAAAAGGAAAAACAGCCT 60.203 47.619 0.00 0.00 35.61 4.58
5631 6487 1.217001 CCCGCAAAAGGAAAAACAGC 58.783 50.000 0.00 0.00 0.00 4.40
5632 6488 1.540146 CCCCCGCAAAAGGAAAAACAG 60.540 52.381 0.00 0.00 0.00 3.16
5633 6489 0.466124 CCCCCGCAAAAGGAAAAACA 59.534 50.000 0.00 0.00 0.00 2.83
5634 6490 0.882927 GCCCCCGCAAAAGGAAAAAC 60.883 55.000 0.00 0.00 34.03 2.43
5717 6647 2.436646 AAAGCCCACTCCATCGCG 60.437 61.111 0.00 0.00 0.00 5.87
5732 6662 1.269517 GCCCATGTCGTTTGAAGCAAA 60.270 47.619 0.00 0.00 0.00 3.68
5915 6891 0.601558 CACCACTACGGCAGTACAGT 59.398 55.000 0.00 0.00 39.03 3.55
6015 7044 1.541147 GTTGGGGTAGCCGGTAAAAAC 59.459 52.381 1.90 0.00 0.00 2.43
6016 7045 1.547449 GGTTGGGGTAGCCGGTAAAAA 60.547 52.381 1.90 0.00 0.00 1.94
6017 7046 0.038021 GGTTGGGGTAGCCGGTAAAA 59.962 55.000 1.90 0.00 0.00 1.52
6018 7047 1.684629 GGTTGGGGTAGCCGGTAAA 59.315 57.895 1.90 0.00 0.00 2.01
6019 7048 2.300197 GGGTTGGGGTAGCCGGTAA 61.300 63.158 1.90 0.00 0.00 2.85
6020 7049 2.688299 GGGTTGGGGTAGCCGGTA 60.688 66.667 1.90 0.00 0.00 4.02
6021 7050 4.986774 TGGGTTGGGGTAGCCGGT 62.987 66.667 1.90 0.00 38.54 5.28
6022 7051 4.109675 CTGGGTTGGGGTAGCCGG 62.110 72.222 4.56 0.00 38.54 6.13
6023 7052 4.109675 CCTGGGTTGGGGTAGCCG 62.110 72.222 4.56 0.00 38.54 5.52
6024 7053 4.442454 GCCTGGGTTGGGGTAGCC 62.442 72.222 1.07 1.07 36.22 3.93
6025 7054 4.796495 CGCCTGGGTTGGGGTAGC 62.796 72.222 0.00 0.00 35.60 3.58
6026 7055 4.796495 GCGCCTGGGTTGGGGTAG 62.796 72.222 0.00 0.00 41.45 3.18
6030 7059 4.351054 AAGAGCGCCTGGGTTGGG 62.351 66.667 2.29 0.00 0.00 4.12
6031 7060 2.826777 ATCAAGAGCGCCTGGGTTGG 62.827 60.000 2.29 0.00 0.00 3.77
6032 7061 1.377725 ATCAAGAGCGCCTGGGTTG 60.378 57.895 2.29 0.74 0.00 3.77
6033 7062 1.377725 CATCAAGAGCGCCTGGGTT 60.378 57.895 2.29 0.00 0.00 4.11
6034 7063 2.270205 CATCAAGAGCGCCTGGGT 59.730 61.111 2.29 0.00 0.00 4.51
6035 7064 2.110967 CACATCAAGAGCGCCTGGG 61.111 63.158 2.29 0.00 0.00 4.45
6036 7065 2.110967 CCACATCAAGAGCGCCTGG 61.111 63.158 2.29 0.00 0.00 4.45
6037 7066 2.758089 GCCACATCAAGAGCGCCTG 61.758 63.158 2.29 0.00 0.00 4.85
6038 7067 2.437359 GCCACATCAAGAGCGCCT 60.437 61.111 2.29 0.00 0.00 5.52
6039 7068 2.437359 AGCCACATCAAGAGCGCC 60.437 61.111 2.29 0.00 0.00 6.53
6040 7069 1.449246 AGAGCCACATCAAGAGCGC 60.449 57.895 0.00 0.00 0.00 5.92
6041 7070 1.703438 GCAGAGCCACATCAAGAGCG 61.703 60.000 0.00 0.00 0.00 5.03
6042 7071 1.703438 CGCAGAGCCACATCAAGAGC 61.703 60.000 0.00 0.00 0.00 4.09
6043 7072 0.108472 TCGCAGAGCCACATCAAGAG 60.108 55.000 0.00 0.00 0.00 2.85
6044 7073 0.390340 GTCGCAGAGCCACATCAAGA 60.390 55.000 0.00 0.00 36.95 3.02
6045 7074 2.084844 GTCGCAGAGCCACATCAAG 58.915 57.895 0.00 0.00 36.95 3.02
6046 7075 4.284123 GTCGCAGAGCCACATCAA 57.716 55.556 0.00 0.00 36.95 2.57
6055 7084 4.003534 CTATGCACGGTCGCAGAG 57.996 61.111 10.95 10.95 46.99 3.35
6056 7085 1.138883 GACTATGCACGGTCGCAGA 59.861 57.895 10.19 5.81 46.99 4.26
6057 7086 0.867753 GAGACTATGCACGGTCGCAG 60.868 60.000 15.79 2.38 46.99 5.18
6059 7088 0.592754 GAGAGACTATGCACGGTCGC 60.593 60.000 13.81 13.81 37.52 5.19
6060 7089 0.029567 GGAGAGACTATGCACGGTCG 59.970 60.000 13.06 0.00 37.52 4.79
6061 7090 0.029567 CGGAGAGACTATGCACGGTC 59.970 60.000 11.54 11.54 0.00 4.79
6062 7091 2.005960 GCGGAGAGACTATGCACGGT 62.006 60.000 0.00 0.00 0.00 4.83
6063 7092 1.299468 GCGGAGAGACTATGCACGG 60.299 63.158 0.00 0.00 0.00 4.94
6064 7093 1.299468 GGCGGAGAGACTATGCACG 60.299 63.158 0.00 0.00 0.00 5.34
6065 7094 0.461961 AAGGCGGAGAGACTATGCAC 59.538 55.000 0.00 0.00 37.06 4.57
6066 7095 0.747255 GAAGGCGGAGAGACTATGCA 59.253 55.000 0.00 0.00 37.06 3.96
6067 7096 0.747255 TGAAGGCGGAGAGACTATGC 59.253 55.000 0.00 0.00 37.06 3.14
6068 7097 2.028130 AGTGAAGGCGGAGAGACTATG 58.972 52.381 0.00 0.00 37.06 2.23
6069 7098 2.445682 AGTGAAGGCGGAGAGACTAT 57.554 50.000 0.00 0.00 37.06 2.12
6070 7099 2.217510 AAGTGAAGGCGGAGAGACTA 57.782 50.000 0.00 0.00 37.06 2.59
6071 7100 1.343069 AAAGTGAAGGCGGAGAGACT 58.657 50.000 0.00 0.00 42.73 3.24
6072 7101 2.171341 AAAAGTGAAGGCGGAGAGAC 57.829 50.000 0.00 0.00 0.00 3.36
6073 7102 2.930826 AAAAAGTGAAGGCGGAGAGA 57.069 45.000 0.00 0.00 0.00 3.10
6152 7194 3.129813 TGTGTCTCGTATGTATGGTGACC 59.870 47.826 0.00 0.00 0.00 4.02
6153 7195 4.365899 TGTGTCTCGTATGTATGGTGAC 57.634 45.455 0.00 0.00 0.00 3.67
6154 7196 5.394224 TTTGTGTCTCGTATGTATGGTGA 57.606 39.130 0.00 0.00 0.00 4.02
6155 7197 5.502382 GCATTTGTGTCTCGTATGTATGGTG 60.502 44.000 0.00 0.00 0.00 4.17
6156 7198 4.570772 GCATTTGTGTCTCGTATGTATGGT 59.429 41.667 0.00 0.00 0.00 3.55
6157 7199 4.811024 AGCATTTGTGTCTCGTATGTATGG 59.189 41.667 0.00 0.00 0.00 2.74
6158 7200 5.973651 AGCATTTGTGTCTCGTATGTATG 57.026 39.130 0.00 0.00 0.00 2.39
6159 7201 5.874810 ACAAGCATTTGTGTCTCGTATGTAT 59.125 36.000 0.00 0.00 45.54 2.29
6160 7202 5.234752 ACAAGCATTTGTGTCTCGTATGTA 58.765 37.500 0.00 0.00 45.54 2.29
6161 7203 4.065088 ACAAGCATTTGTGTCTCGTATGT 58.935 39.130 0.00 0.00 45.54 2.29
6205 7247 9.583765 GGAATAGTAGTTTTACCTCTTGTGTAG 57.416 37.037 0.00 0.00 0.00 2.74
6207 7249 7.876582 GTGGAATAGTAGTTTTACCTCTTGTGT 59.123 37.037 0.00 0.00 0.00 3.72
6235 7277 0.944386 GAGGCACGAGTTTCTGCAAA 59.056 50.000 0.00 0.00 34.90 3.68
6306 7348 1.739035 CGGCGGCTGTTCTCATCTTTA 60.739 52.381 7.61 0.00 0.00 1.85
6326 7368 6.159988 GTGGTGCTCTCATATATCTTGGTAC 58.840 44.000 0.00 0.00 0.00 3.34
6366 7408 0.734889 CCGCTTCATCGGCTCAAAAT 59.265 50.000 0.00 0.00 43.18 1.82
6405 7447 0.669619 TACGTGCCACAAAGACTCGA 59.330 50.000 0.00 0.00 0.00 4.04
6477 7519 4.940046 ACGTTCCTCTTCTTCGACTACATA 59.060 41.667 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.