Multiple sequence alignment - TraesCS3B01G300000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G300000 chr3B 100.000 5749 0 0 1 5749 481623546 481617798 0.000000e+00 10617.0
1 TraesCS3B01G300000 chr3B 96.250 80 3 0 2537 2616 481620932 481620853 1.300000e-26 132.0
2 TraesCS3B01G300000 chr3B 96.250 80 3 0 2615 2694 481621010 481620931 1.300000e-26 132.0
3 TraesCS3B01G300000 chr3A 92.219 3997 171 38 1 3925 491187264 491183336 0.000000e+00 5529.0
4 TraesCS3B01G300000 chr3A 88.919 740 49 7 4459 5195 491182865 491182156 0.000000e+00 881.0
5 TraesCS3B01G300000 chr3A 88.930 542 42 10 4034 4564 491183343 491182809 0.000000e+00 652.0
6 TraesCS3B01G300000 chr3A 88.222 433 29 12 5328 5748 491180790 491180368 1.110000e-136 497.0
7 TraesCS3B01G300000 chr3A 97.500 80 2 0 2615 2694 491184696 491184617 2.790000e-28 137.0
8 TraesCS3B01G300000 chr3A 89.474 95 7 3 5192 5284 638069854 638069947 3.640000e-22 117.0
9 TraesCS3B01G300000 chr3D 92.635 2987 136 35 1 2932 370113578 370110621 0.000000e+00 4220.0
10 TraesCS3B01G300000 chr3D 92.222 900 43 15 3047 3922 370110582 370109686 0.000000e+00 1249.0
11 TraesCS3B01G300000 chr3D 93.033 732 45 6 4467 5195 370109151 370108423 0.000000e+00 1064.0
12 TraesCS3B01G300000 chr3D 89.385 537 38 11 4038 4564 370109679 370109152 0.000000e+00 658.0
13 TraesCS3B01G300000 chr3D 88.462 442 21 15 5328 5749 370108350 370107919 1.850000e-139 507.0
14 TraesCS3B01G300000 chr3D 95.763 118 5 0 3920 4037 5478176 5478059 2.110000e-44 191.0
15 TraesCS3B01G300000 chr3D 95.726 117 5 0 3921 4037 16531949 16532065 7.600000e-44 189.0
16 TraesCS3B01G300000 chr3D 96.154 104 4 0 4459 4562 370109208 370109105 2.750000e-38 171.0
17 TraesCS3B01G300000 chr3D 97.500 80 2 0 2537 2616 370110938 370110859 2.790000e-28 137.0
18 TraesCS3B01G300000 chr6D 95.935 123 5 0 3916 4038 17166759 17166637 3.510000e-47 200.0
19 TraesCS3B01G300000 chr4B 95.238 126 5 1 3920 4045 22258904 22258780 1.260000e-46 198.0
20 TraesCS3B01G300000 chr4B 89.286 56 4 2 3542 3596 23667363 23667309 1.030000e-07 69.4
21 TraesCS3B01G300000 chr6B 95.200 125 5 1 3913 4037 522062526 522062403 4.540000e-46 196.0
22 TraesCS3B01G300000 chr5B 95.833 120 5 0 3918 4037 539282153 539282034 1.630000e-45 195.0
23 TraesCS3B01G300000 chr5B 81.224 245 34 9 4201 4444 328373984 328373751 2.740000e-43 187.0
24 TraesCS3B01G300000 chr2B 95.833 120 5 0 3918 4037 2233729 2233848 1.630000e-45 195.0
25 TraesCS3B01G300000 chr2B 95.726 117 5 0 3921 4037 624544489 624544373 7.600000e-44 189.0
26 TraesCS3B01G300000 chr2B 90.323 93 6 2 5191 5281 387076185 387076276 1.010000e-22 119.0
27 TraesCS3B01G300000 chr2B 77.021 235 33 12 4211 4444 442520368 442520154 1.310000e-21 115.0
28 TraesCS3B01G300000 chr2B 90.909 88 4 3 5192 5277 559179596 559179511 1.310000e-21 115.0
29 TraesCS3B01G300000 chr2B 93.220 59 2 2 3538 3596 178709002 178709058 1.030000e-12 86.1
30 TraesCS3B01G300000 chr1B 94.958 119 6 0 3920 4038 406345064 406344946 2.740000e-43 187.0
31 TraesCS3B01G300000 chr1B 87.500 88 8 1 3501 3585 618697664 618697577 1.320000e-16 99.0
32 TraesCS3B01G300000 chr1B 84.848 99 10 3 3490 3583 606319328 606319230 1.710000e-15 95.3
33 TraesCS3B01G300000 chr2A 79.654 231 36 8 4211 4440 504339077 504339297 7.710000e-34 156.0
34 TraesCS3B01G300000 chr2A 86.408 103 11 2 5181 5281 642202943 642203044 6.090000e-20 110.0
35 TraesCS3B01G300000 chr2A 88.889 63 3 4 3535 3596 131706183 131706242 2.220000e-09 75.0
36 TraesCS3B01G300000 chr2D 79.310 232 37 7 4211 4441 372929901 372929680 9.980000e-33 152.0
37 TraesCS3B01G300000 chr2D 88.889 99 6 5 5200 5296 383294602 383294697 3.640000e-22 117.0
38 TraesCS3B01G300000 chr2D 89.362 94 7 2 5184 5275 648278483 648278391 1.310000e-21 115.0
39 TraesCS3B01G300000 chr2D 92.593 54 3 1 3535 3587 169042500 169042553 6.180000e-10 76.8
40 TraesCS3B01G300000 chr5D 78.947 247 28 12 4199 4444 289080774 289080551 4.640000e-31 147.0
41 TraesCS3B01G300000 chr7A 78.509 228 33 10 4214 4433 177333450 177333669 1.000000e-27 135.0
42 TraesCS3B01G300000 chr7A 91.860 86 4 2 5194 5277 664477208 664477292 3.640000e-22 117.0
43 TraesCS3B01G300000 chr7A 89.888 89 6 2 3500 3585 190473066 190472978 1.690000e-20 111.0
44 TraesCS3B01G300000 chr7D 77.974 227 35 8 4214 4433 175652399 175652617 1.680000e-25 128.0
45 TraesCS3B01G300000 chr7D 87.234 94 8 2 3500 3589 121937433 121937340 2.830000e-18 104.0
46 TraesCS3B01G300000 chr7D 82.759 116 15 3 3496 3607 151326534 151326420 1.320000e-16 99.0
47 TraesCS3B01G300000 chr4D 88.298 94 9 2 5193 5286 134142423 134142514 1.690000e-20 111.0
48 TraesCS3B01G300000 chr4A 91.463 82 6 1 5200 5281 14353353 14353273 1.690000e-20 111.0
49 TraesCS3B01G300000 chr6A 88.889 90 6 3 3501 3586 479543543 479543454 2.190000e-19 108.0
50 TraesCS3B01G300000 chr7B 88.372 86 7 2 3501 3583 482484951 482485036 3.670000e-17 100.0
51 TraesCS3B01G300000 chr7B 91.071 56 3 2 3538 3593 245993880 245993827 2.220000e-09 75.0
52 TraesCS3B01G300000 chr1A 84.375 96 9 4 3496 3590 515590702 515590792 7.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G300000 chr3B 481617798 481623546 5748 True 3627.000000 10617 97.500000 1 5749 3 chr3B.!!$R1 5748
1 TraesCS3B01G300000 chr3A 491180368 491187264 6896 True 1539.200000 5529 91.158000 1 5748 5 chr3A.!!$R1 5747
2 TraesCS3B01G300000 chr3D 370107919 370113578 5659 True 1143.714286 4220 92.770143 1 5749 7 chr3D.!!$R2 5748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 893 0.030369 ATCCGACGGCGTGAGTATTC 59.970 55.000 21.19 0.0 35.23 1.75 F
885 921 0.035881 ATCCGGCGCTTCATCATCAT 59.964 50.000 7.64 0.0 0.00 2.45 F
886 922 0.678950 TCCGGCGCTTCATCATCATA 59.321 50.000 7.64 0.0 0.00 2.15 F
887 923 1.073964 CCGGCGCTTCATCATCATAG 58.926 55.000 7.64 0.0 0.00 2.23 F
2429 2499 1.134461 CCCAGAGCAGTGATTCAGAGG 60.134 57.143 0.00 0.0 0.00 3.69 F
3939 4093 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2348 1.202452 GCTATGGGTTTTGCATCTGCC 60.202 52.381 0.0 0.0 41.18 4.85 R
2496 2566 2.372172 CCCTCACACTCCAAACTACCTT 59.628 50.000 0.0 0.0 0.00 3.50 R
2697 2767 2.936498 CCGGTGTTATCCACATCTGTTC 59.064 50.000 0.0 0.0 46.44 3.18 R
2871 2941 6.183361 TGTGGTGATAAATATGTACCCAGAGG 60.183 42.308 0.0 0.0 40.04 3.69 R
4023 4177 0.179023 ACGAGATACTCCCTCCGTCC 60.179 60.000 0.0 0.0 0.00 4.79 R
4937 5204 0.109913 TTATCGCTAGAGGCCGAGGA 59.890 55.000 0.0 0.0 37.74 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 145 0.108186 CGTGAGCAGGCAACCTATCA 60.108 55.000 0.00 0.00 29.64 2.15
150 154 3.059097 AGGCAACCTATCAGGGAATGAT 58.941 45.455 0.00 0.00 45.28 2.45
167 171 3.678717 ATTCCACGCCGACGACGAG 62.679 63.158 11.37 1.57 43.93 4.18
341 357 0.861837 GTATGCAGAATTCCTCCGCG 59.138 55.000 0.00 0.00 0.00 6.46
496 512 0.037697 ACCGCACGCAGAAATGAGTA 60.038 50.000 0.00 0.00 0.00 2.59
566 593 1.153939 CAGCGGTGTCTTCTCTCGG 60.154 63.158 6.41 0.00 0.00 4.63
567 594 1.604023 AGCGGTGTCTTCTCTCGGT 60.604 57.895 0.00 0.00 0.00 4.69
569 596 1.213013 CGGTGTCTTCTCTCGGTGG 59.787 63.158 0.00 0.00 0.00 4.61
570 597 1.592223 GGTGTCTTCTCTCGGTGGG 59.408 63.158 0.00 0.00 0.00 4.61
571 598 0.898789 GGTGTCTTCTCTCGGTGGGA 60.899 60.000 0.00 0.00 0.00 4.37
603 631 1.681327 GCTGGTGTACGGGGAGAGA 60.681 63.158 0.00 0.00 0.00 3.10
841 877 2.026301 CTCCCGAACGCGAGATCC 59.974 66.667 15.93 0.00 40.82 3.36
854 890 1.434622 GAGATCCGACGGCGTGAGTA 61.435 60.000 21.19 0.00 35.23 2.59
855 891 0.818445 AGATCCGACGGCGTGAGTAT 60.818 55.000 21.19 3.14 35.23 2.12
857 893 0.030369 ATCCGACGGCGTGAGTATTC 59.970 55.000 21.19 0.00 35.23 1.75
858 894 1.028330 TCCGACGGCGTGAGTATTCT 61.028 55.000 21.19 0.00 35.23 2.40
859 895 0.866061 CCGACGGCGTGAGTATTCTG 60.866 60.000 21.19 0.00 35.23 3.02
860 896 0.866061 CGACGGCGTGAGTATTCTGG 60.866 60.000 21.19 0.00 0.00 3.86
861 897 0.527817 GACGGCGTGAGTATTCTGGG 60.528 60.000 21.19 0.00 0.00 4.45
862 898 1.227263 CGGCGTGAGTATTCTGGGG 60.227 63.158 0.00 0.00 0.00 4.96
865 901 1.227263 CGTGAGTATTCTGGGGCCG 60.227 63.158 0.00 0.00 0.00 6.13
867 903 0.759346 GTGAGTATTCTGGGGCCGAT 59.241 55.000 0.00 0.00 0.00 4.18
868 904 1.048601 TGAGTATTCTGGGGCCGATC 58.951 55.000 0.00 0.00 0.00 3.69
869 905 0.321996 GAGTATTCTGGGGCCGATCC 59.678 60.000 0.00 0.00 0.00 3.36
880 916 3.038417 CCGATCCGGCGCTTCATC 61.038 66.667 7.64 5.15 41.17 2.92
881 917 2.279451 CGATCCGGCGCTTCATCA 60.279 61.111 7.64 0.00 0.00 3.07
884 920 0.601046 GATCCGGCGCTTCATCATCA 60.601 55.000 7.64 0.00 0.00 3.07
885 921 0.035881 ATCCGGCGCTTCATCATCAT 59.964 50.000 7.64 0.00 0.00 2.45
886 922 0.678950 TCCGGCGCTTCATCATCATA 59.321 50.000 7.64 0.00 0.00 2.15
887 923 1.073964 CCGGCGCTTCATCATCATAG 58.926 55.000 7.64 0.00 0.00 2.23
888 924 1.606480 CCGGCGCTTCATCATCATAGT 60.606 52.381 7.64 0.00 0.00 2.12
889 925 1.723542 CGGCGCTTCATCATCATAGTC 59.276 52.381 7.64 0.00 0.00 2.59
890 926 2.759191 GGCGCTTCATCATCATAGTCA 58.241 47.619 7.64 0.00 0.00 3.41
891 927 3.133691 GGCGCTTCATCATCATAGTCAA 58.866 45.455 7.64 0.00 0.00 3.18
892 928 3.059325 GGCGCTTCATCATCATAGTCAAC 60.059 47.826 7.64 0.00 0.00 3.18
904 940 6.531594 TCATCATAGTCAACAAAAGTCTAGCG 59.468 38.462 0.00 0.00 0.00 4.26
981 1032 1.294138 CTAGGGTTTCGCCGACCAA 59.706 57.895 0.00 0.00 38.98 3.67
1323 1374 1.664965 GACCAGCAACTTCGACGCT 60.665 57.895 0.00 0.00 36.10 5.07
1419 1470 1.468224 GCAGATCGTCAGCTCGAGAAA 60.468 52.381 18.75 0.00 43.00 2.52
1497 1548 1.676014 GCTGCCGAGGTTGACAAGTAT 60.676 52.381 0.00 0.00 0.00 2.12
1512 1563 5.708697 TGACAAGTATCTTGAGAAGTACCGA 59.291 40.000 15.04 0.00 0.00 4.69
1646 1697 7.328493 GTGAGTGCTAAAACAACAACTTTTCTT 59.672 33.333 0.00 0.00 0.00 2.52
1662 1713 5.537295 ACTTTTCTTTTGTGGTGTATACCCC 59.463 40.000 6.15 0.00 46.96 4.95
1713 1783 9.369904 GCATATTGTTTCAACCATAGTTCATTT 57.630 29.630 0.00 0.00 32.45 2.32
1798 1868 6.463995 TTTGTTGAGATGTTAGCCAAGTTT 57.536 33.333 0.00 0.00 0.00 2.66
1890 1960 5.426689 ACATGCTTGAGATCCTGTCTAAA 57.573 39.130 6.60 0.00 37.29 1.85
1947 2017 4.201822 GGTGGTGCTCTATGTTCGATTTTC 60.202 45.833 0.00 0.00 0.00 2.29
2038 2108 2.164624 AGTTGCTCTCGTAAGTGGCTAG 59.835 50.000 0.00 0.00 39.48 3.42
2080 2150 7.233757 GGATGAGAGGCTATAAAGGTTTCTCTA 59.766 40.741 0.00 0.00 32.79 2.43
2107 2177 5.782047 CAAATGTGCACCTTTATTTCAGGA 58.218 37.500 18.04 0.00 35.14 3.86
2140 2210 6.882610 AATCAAGCATGTTACACTGAAGAA 57.117 33.333 0.00 0.00 0.00 2.52
2142 2212 8.565896 AATCAAGCATGTTACACTGAAGAATA 57.434 30.769 0.00 0.00 0.00 1.75
2167 2237 7.224297 ACTGGACTGTGTGTGTTATTCTATTT 58.776 34.615 0.00 0.00 0.00 1.40
2168 2238 7.719633 ACTGGACTGTGTGTGTTATTCTATTTT 59.280 33.333 0.00 0.00 0.00 1.82
2193 2263 3.065925 GGTGCTAACTGCCTGATTGAATC 59.934 47.826 0.00 0.00 42.00 2.52
2203 2273 5.531634 TGCCTGATTGAATCAACTTGTTTC 58.468 37.500 9.39 5.85 39.11 2.78
2215 2285 2.676748 ACTTGTTTCAGGATGGGCAAA 58.323 42.857 0.00 0.00 36.16 3.68
2266 2336 2.224042 TGACAGTGACAGTGATGTGGAC 60.224 50.000 17.24 0.90 0.00 4.02
2278 2348 2.368548 TGATGTGGACGATAATGAGGGG 59.631 50.000 0.00 0.00 0.00 4.79
2330 2400 7.124721 TCATGGGAATTACTCAAATGAATCCA 58.875 34.615 0.00 0.00 30.42 3.41
2347 2417 3.943671 TCCAACAAAAGTGAGGAGGAA 57.056 42.857 0.00 0.00 31.74 3.36
2429 2499 1.134461 CCCAGAGCAGTGATTCAGAGG 60.134 57.143 0.00 0.00 0.00 3.69
2494 2564 6.058553 AGATCAGGATGTGATTTTGAGTCA 57.941 37.500 0.00 0.00 46.64 3.41
2495 2565 5.879223 AGATCAGGATGTGATTTTGAGTCAC 59.121 40.000 0.00 0.00 46.64 3.67
2560 2630 4.024472 GCTCCTGAGAACACTTCTGAAAAC 60.024 45.833 0.00 0.00 40.87 2.43
2574 2644 5.215252 TCTGAAAACGGAACTTCTGAGAT 57.785 39.130 4.52 0.00 0.00 2.75
2597 2667 4.887748 TGGTAAGAGTGCTCTTTCAGAAG 58.112 43.478 18.12 0.00 46.95 2.85
2661 2731 6.433847 TGGAACTTCTGAGAATGGTAAGAA 57.566 37.500 0.00 0.00 0.00 2.52
2862 2932 3.758554 GCAGAATTGGAGGTATGTTGTGT 59.241 43.478 0.00 0.00 0.00 3.72
2863 2933 4.218417 GCAGAATTGGAGGTATGTTGTGTT 59.782 41.667 0.00 0.00 0.00 3.32
2864 2934 5.278957 GCAGAATTGGAGGTATGTTGTGTTT 60.279 40.000 0.00 0.00 0.00 2.83
2865 2935 6.381801 CAGAATTGGAGGTATGTTGTGTTTC 58.618 40.000 0.00 0.00 0.00 2.78
2866 2936 6.207417 CAGAATTGGAGGTATGTTGTGTTTCT 59.793 38.462 0.00 0.00 0.00 2.52
2867 2937 7.390440 CAGAATTGGAGGTATGTTGTGTTTCTA 59.610 37.037 0.00 0.00 0.00 2.10
2868 2938 7.942341 AGAATTGGAGGTATGTTGTGTTTCTAA 59.058 33.333 0.00 0.00 0.00 2.10
2869 2939 6.870971 TTGGAGGTATGTTGTGTTTCTAAC 57.129 37.500 0.00 0.00 0.00 2.34
2870 2940 5.310451 TGGAGGTATGTTGTGTTTCTAACC 58.690 41.667 0.00 0.00 0.00 2.85
2871 2941 4.698780 GGAGGTATGTTGTGTTTCTAACCC 59.301 45.833 0.00 0.00 0.00 4.11
2872 2942 4.659115 AGGTATGTTGTGTTTCTAACCCC 58.341 43.478 0.00 0.00 0.00 4.95
2873 2943 4.352893 AGGTATGTTGTGTTTCTAACCCCT 59.647 41.667 0.00 0.00 0.00 4.79
2874 2944 4.698780 GGTATGTTGTGTTTCTAACCCCTC 59.301 45.833 0.00 0.00 0.00 4.30
2875 2945 4.724279 ATGTTGTGTTTCTAACCCCTCT 57.276 40.909 0.00 0.00 0.00 3.69
2876 2946 3.815809 TGTTGTGTTTCTAACCCCTCTG 58.184 45.455 0.00 0.00 0.00 3.35
2877 2947 3.146847 GTTGTGTTTCTAACCCCTCTGG 58.853 50.000 0.00 0.00 41.37 3.86
2990 3096 1.410517 TCTAGGCAGCTGAATTCTCGG 59.589 52.381 20.43 5.81 0.00 4.63
2993 3099 1.221840 GCAGCTGAATTCTCGGGGA 59.778 57.895 20.43 0.00 0.00 4.81
3000 3106 3.633986 GCTGAATTCTCGGGGAAATTCAT 59.366 43.478 11.37 0.00 37.49 2.57
3011 3117 5.770663 TCGGGGAAATTCATTAACTTGACAA 59.229 36.000 0.00 0.00 0.00 3.18
3087 3193 6.153510 ACATGTCATACTATCACAGTGACAGT 59.846 38.462 18.45 18.45 41.13 3.55
3159 3265 7.779326 TCATCCAAATAGCATTCATGGTTCTAA 59.221 33.333 0.00 0.00 39.52 2.10
3219 3325 1.188863 TACCCTCCGAAACACTAGCC 58.811 55.000 0.00 0.00 0.00 3.93
3234 3340 4.780021 ACACTAGCCCATCCTATTCTATGG 59.220 45.833 0.00 0.00 42.02 2.74
3273 3379 0.819582 GGTGCTGATGGGAATTGTGG 59.180 55.000 0.00 0.00 0.00 4.17
3310 3433 9.948964 TGCAAAGCTCATATATATTGTACTCAT 57.051 29.630 0.00 0.00 0.00 2.90
3455 3607 2.930562 AGTTGCCGCCTCCCTCTT 60.931 61.111 0.00 0.00 0.00 2.85
3456 3608 2.747855 GTTGCCGCCTCCCTCTTG 60.748 66.667 0.00 0.00 0.00 3.02
3457 3609 3.249189 TTGCCGCCTCCCTCTTGT 61.249 61.111 0.00 0.00 0.00 3.16
3458 3610 3.254024 TTGCCGCCTCCCTCTTGTC 62.254 63.158 0.00 0.00 0.00 3.18
3459 3611 3.394836 GCCGCCTCCCTCTTGTCT 61.395 66.667 0.00 0.00 0.00 3.41
3460 3612 2.058595 GCCGCCTCCCTCTTGTCTA 61.059 63.158 0.00 0.00 0.00 2.59
3461 3613 1.817209 CCGCCTCCCTCTTGTCTAC 59.183 63.158 0.00 0.00 0.00 2.59
3462 3614 1.433879 CGCCTCCCTCTTGTCTACG 59.566 63.158 0.00 0.00 0.00 3.51
3463 3615 1.313812 CGCCTCCCTCTTGTCTACGT 61.314 60.000 0.00 0.00 0.00 3.57
3464 3616 0.456628 GCCTCCCTCTTGTCTACGTC 59.543 60.000 0.00 0.00 0.00 4.34
3465 3617 1.835494 CCTCCCTCTTGTCTACGTCA 58.165 55.000 0.00 0.00 0.00 4.35
3466 3618 1.746220 CCTCCCTCTTGTCTACGTCAG 59.254 57.143 0.00 0.00 0.00 3.51
3467 3619 2.438411 CTCCCTCTTGTCTACGTCAGT 58.562 52.381 0.00 0.00 0.00 3.41
3468 3620 3.607741 CTCCCTCTTGTCTACGTCAGTA 58.392 50.000 0.00 0.00 0.00 2.74
3469 3621 4.200874 CTCCCTCTTGTCTACGTCAGTAT 58.799 47.826 0.00 0.00 31.58 2.12
3470 3622 4.597004 TCCCTCTTGTCTACGTCAGTATT 58.403 43.478 0.00 0.00 31.58 1.89
3471 3623 4.398358 TCCCTCTTGTCTACGTCAGTATTG 59.602 45.833 0.00 0.00 31.58 1.90
3472 3624 4.440250 CCCTCTTGTCTACGTCAGTATTGG 60.440 50.000 0.00 0.00 31.58 3.16
3473 3625 4.158025 CCTCTTGTCTACGTCAGTATTGGT 59.842 45.833 0.00 0.00 31.58 3.67
3474 3626 5.055642 TCTTGTCTACGTCAGTATTGGTG 57.944 43.478 0.00 0.00 31.58 4.17
3475 3627 4.521639 TCTTGTCTACGTCAGTATTGGTGT 59.478 41.667 0.00 0.00 31.58 4.16
3476 3628 5.706833 TCTTGTCTACGTCAGTATTGGTGTA 59.293 40.000 0.00 0.00 31.58 2.90
3477 3629 6.376299 TCTTGTCTACGTCAGTATTGGTGTAT 59.624 38.462 0.00 0.00 31.58 2.29
3478 3630 6.519679 TGTCTACGTCAGTATTGGTGTATT 57.480 37.500 0.00 0.00 31.58 1.89
3514 3666 8.610369 AGAAAATTTTCTTACTCCCTCTGATCT 58.390 33.333 24.62 0.00 44.70 2.75
3531 3683 7.009999 CCTCTGATCTATATTAATTGTCGCTGC 59.990 40.741 0.00 0.00 0.00 5.25
3553 3705 7.468220 GCTGCTTTACAAAGTTGTACTAAACCT 60.468 37.037 3.38 0.00 42.84 3.50
3693 3845 5.128827 GGTGACAAGTTGGGTCATCTCTATA 59.871 44.000 7.96 0.00 46.01 1.31
3694 3846 6.351881 GGTGACAAGTTGGGTCATCTCTATAA 60.352 42.308 7.96 0.00 46.01 0.98
3695 3847 7.275920 GTGACAAGTTGGGTCATCTCTATAAT 58.724 38.462 7.96 0.00 46.01 1.28
3696 3848 8.421784 GTGACAAGTTGGGTCATCTCTATAATA 58.578 37.037 7.96 0.00 46.01 0.98
3786 3938 8.484641 TCTCTTATCTATGTTTGCAAGTCTTG 57.515 34.615 8.31 8.31 0.00 3.02
3806 3958 4.097551 TGGGTGACAAGTTGAATCATCA 57.902 40.909 10.54 0.00 0.00 3.07
3818 3972 9.469807 CAAGTTGAATCATCACTATAGTAGTCC 57.530 37.037 4.74 0.00 36.76 3.85
3925 4079 9.984590 ATCTATTTCTCCCTATTCTAGTACTCC 57.015 37.037 0.00 0.00 0.00 3.85
3926 4080 8.392479 TCTATTTCTCCCTATTCTAGTACTCCC 58.608 40.741 0.00 0.00 0.00 4.30
3927 4081 6.609379 TTTCTCCCTATTCTAGTACTCCCT 57.391 41.667 0.00 0.00 0.00 4.20
3928 4082 5.846528 TCTCCCTATTCTAGTACTCCCTC 57.153 47.826 0.00 0.00 0.00 4.30
3929 4083 4.602732 TCTCCCTATTCTAGTACTCCCTCC 59.397 50.000 0.00 0.00 0.00 4.30
3930 4084 3.330110 TCCCTATTCTAGTACTCCCTCCG 59.670 52.174 0.00 0.00 0.00 4.63
3931 4085 3.074242 CCCTATTCTAGTACTCCCTCCGT 59.926 52.174 0.00 0.00 0.00 4.69
3932 4086 4.325972 CCTATTCTAGTACTCCCTCCGTC 58.674 52.174 0.00 0.00 0.00 4.79
3933 4087 2.725221 TTCTAGTACTCCCTCCGTCC 57.275 55.000 0.00 0.00 0.00 4.79
3934 4088 0.842635 TCTAGTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
3935 4089 0.534652 CTAGTACTCCCTCCGTCCCG 60.535 65.000 0.00 0.00 0.00 5.14
3936 4090 0.982852 TAGTACTCCCTCCGTCCCGA 60.983 60.000 0.00 0.00 0.00 5.14
3937 4091 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
3938 4092 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
3939 4093 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
3940 4094 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
3941 4095 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
3942 4096 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
3943 4097 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
3944 4098 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
3945 4099 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
3946 4100 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
3947 4101 1.135315 TCCGTCCCGAAATACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
3948 4102 1.135315 CCGTCCCGAAATACTTGTCGA 60.135 52.381 0.00 0.00 39.64 4.20
3949 4103 2.598589 CGTCCCGAAATACTTGTCGAA 58.401 47.619 0.00 0.00 39.64 3.71
3950 4104 2.597305 CGTCCCGAAATACTTGTCGAAG 59.403 50.000 0.00 0.00 39.64 3.79
3951 4105 3.671433 CGTCCCGAAATACTTGTCGAAGA 60.671 47.826 0.00 0.00 39.64 2.87
3952 4106 3.858238 GTCCCGAAATACTTGTCGAAGAG 59.142 47.826 0.00 0.00 39.64 2.85
3953 4107 3.760151 TCCCGAAATACTTGTCGAAGAGA 59.240 43.478 3.53 0.00 39.64 3.10
3954 4108 4.401519 TCCCGAAATACTTGTCGAAGAGAT 59.598 41.667 3.53 0.00 39.64 2.75
3955 4109 4.504461 CCCGAAATACTTGTCGAAGAGATG 59.496 45.833 3.53 0.00 39.64 2.90
3956 4110 4.504461 CCGAAATACTTGTCGAAGAGATGG 59.496 45.833 3.53 0.00 39.64 3.51
3957 4111 5.340803 CGAAATACTTGTCGAAGAGATGGA 58.659 41.667 3.53 0.00 39.64 3.41
3958 4112 5.980116 CGAAATACTTGTCGAAGAGATGGAT 59.020 40.000 3.53 0.00 39.64 3.41
3959 4113 7.139392 CGAAATACTTGTCGAAGAGATGGATA 58.861 38.462 3.53 0.00 39.64 2.59
3960 4114 7.648112 CGAAATACTTGTCGAAGAGATGGATAA 59.352 37.037 3.53 0.00 39.64 1.75
3961 4115 9.314321 GAAATACTTGTCGAAGAGATGGATAAA 57.686 33.333 3.53 0.00 36.95 1.40
3962 4116 9.667107 AAATACTTGTCGAAGAGATGGATAAAA 57.333 29.630 3.53 0.00 36.95 1.52
3963 4117 9.838339 AATACTTGTCGAAGAGATGGATAAAAT 57.162 29.630 3.53 0.00 36.95 1.82
3964 4118 9.838339 ATACTTGTCGAAGAGATGGATAAAATT 57.162 29.630 3.53 0.00 36.95 1.82
3965 4119 7.978982 ACTTGTCGAAGAGATGGATAAAATTG 58.021 34.615 3.53 0.00 36.95 2.32
3966 4120 6.925610 TGTCGAAGAGATGGATAAAATTGG 57.074 37.500 0.00 0.00 36.95 3.16
3967 4121 6.649155 TGTCGAAGAGATGGATAAAATTGGA 58.351 36.000 0.00 0.00 36.95 3.53
3968 4122 7.282585 TGTCGAAGAGATGGATAAAATTGGAT 58.717 34.615 0.00 0.00 36.95 3.41
3969 4123 7.227314 TGTCGAAGAGATGGATAAAATTGGATG 59.773 37.037 0.00 0.00 36.95 3.51
3970 4124 6.205464 TCGAAGAGATGGATAAAATTGGATGC 59.795 38.462 0.00 0.00 0.00 3.91
3971 4125 6.016860 CGAAGAGATGGATAAAATTGGATGCA 60.017 38.462 0.00 0.00 0.00 3.96
3972 4126 7.309012 CGAAGAGATGGATAAAATTGGATGCAT 60.309 37.037 0.00 0.00 36.89 3.96
3973 4127 7.463961 AGAGATGGATAAAATTGGATGCATC 57.536 36.000 18.81 18.81 45.93 3.91
3980 4134 9.812347 TGGATAAAATTGGATGCATCTATAACT 57.188 29.630 25.28 9.77 0.00 2.24
3989 4143 9.772973 TTGGATGCATCTATAACTAAAATACGT 57.227 29.630 25.28 0.00 0.00 3.57
3990 4144 9.419297 TGGATGCATCTATAACTAAAATACGTC 57.581 33.333 25.28 3.59 0.00 4.34
3991 4145 9.640963 GGATGCATCTATAACTAAAATACGTCT 57.359 33.333 25.28 0.00 0.00 4.18
4007 4161 9.838339 AAAATACGTCTAGATTCATCCATTTCT 57.162 29.630 0.00 0.00 0.00 2.52
4008 4162 9.838339 AAATACGTCTAGATTCATCCATTTCTT 57.162 29.630 0.00 0.00 0.00 2.52
4009 4163 9.482627 AATACGTCTAGATTCATCCATTTCTTC 57.517 33.333 0.00 0.00 0.00 2.87
4010 4164 5.980116 ACGTCTAGATTCATCCATTTCTTCG 59.020 40.000 0.00 0.00 0.00 3.79
4011 4165 6.183360 ACGTCTAGATTCATCCATTTCTTCGA 60.183 38.462 0.00 0.00 0.00 3.71
4012 4166 6.143118 CGTCTAGATTCATCCATTTCTTCGAC 59.857 42.308 0.00 0.00 0.00 4.20
4013 4167 6.980978 GTCTAGATTCATCCATTTCTTCGACA 59.019 38.462 0.00 0.00 0.00 4.35
4014 4168 7.492669 GTCTAGATTCATCCATTTCTTCGACAA 59.507 37.037 0.00 0.00 0.00 3.18
4015 4169 6.674694 AGATTCATCCATTTCTTCGACAAG 57.325 37.500 0.00 0.00 0.00 3.16
4016 4170 6.176183 AGATTCATCCATTTCTTCGACAAGT 58.824 36.000 0.00 0.00 0.00 3.16
4017 4171 7.331026 AGATTCATCCATTTCTTCGACAAGTA 58.669 34.615 0.00 0.00 0.00 2.24
4018 4172 7.989741 AGATTCATCCATTTCTTCGACAAGTAT 59.010 33.333 0.00 0.00 0.00 2.12
4019 4173 7.921786 TTCATCCATTTCTTCGACAAGTATT 57.078 32.000 0.00 0.00 0.00 1.89
4020 4174 7.921786 TCATCCATTTCTTCGACAAGTATTT 57.078 32.000 0.00 0.00 0.00 1.40
4021 4175 7.974675 TCATCCATTTCTTCGACAAGTATTTC 58.025 34.615 0.00 0.00 0.00 2.17
4022 4176 7.824289 TCATCCATTTCTTCGACAAGTATTTCT 59.176 33.333 0.00 0.00 0.00 2.52
4023 4177 7.364522 TCCATTTCTTCGACAAGTATTTCTG 57.635 36.000 0.00 0.00 0.00 3.02
4024 4178 6.371548 TCCATTTCTTCGACAAGTATTTCTGG 59.628 38.462 0.00 0.00 0.00 3.86
4025 4179 6.371548 CCATTTCTTCGACAAGTATTTCTGGA 59.628 38.462 0.00 0.00 0.00 3.86
4026 4180 6.780706 TTTCTTCGACAAGTATTTCTGGAC 57.219 37.500 0.00 0.00 0.00 4.02
4027 4181 4.482386 TCTTCGACAAGTATTTCTGGACG 58.518 43.478 0.00 0.00 36.80 4.79
4028 4182 3.226346 TCGACAAGTATTTCTGGACGG 57.774 47.619 0.00 0.00 36.30 4.79
4029 4183 2.821378 TCGACAAGTATTTCTGGACGGA 59.179 45.455 0.00 0.00 36.30 4.69
4030 4184 3.119602 TCGACAAGTATTTCTGGACGGAG 60.120 47.826 0.00 0.00 36.30 4.63
4031 4185 3.522553 GACAAGTATTTCTGGACGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
4032 4186 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
4033 4187 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
4034 4188 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
4035 4189 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
4036 4190 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
4058 4218 1.863454 CTCGTATCCTTCATGCTGTGC 59.137 52.381 0.00 0.00 0.00 4.57
4065 4225 3.848301 TTCATGCTGTGCGCCACCT 62.848 57.895 4.18 0.00 38.05 4.00
4144 4304 3.572642 TCCACACTACTTTGGTCTGAGA 58.427 45.455 0.00 0.00 34.19 3.27
4147 4307 4.021104 CCACACTACTTTGGTCTGAGATCA 60.021 45.833 0.00 0.00 0.00 2.92
4150 4310 7.323420 CACACTACTTTGGTCTGAGATCATTA 58.677 38.462 0.00 0.00 0.00 1.90
4185 4345 6.326583 CCTCCTTATGTTTGGTACATCCTCTA 59.673 42.308 0.00 0.00 44.15 2.43
4460 4621 8.718656 AGAGGGAGTATGTAAAATCTATTTGCT 58.281 33.333 0.00 0.00 0.00 3.91
4461 4622 8.682936 AGGGAGTATGTAAAATCTATTTGCTG 57.317 34.615 0.00 0.00 0.00 4.41
4462 4623 8.494433 AGGGAGTATGTAAAATCTATTTGCTGA 58.506 33.333 0.00 0.00 0.00 4.26
4501 4719 7.930217 TGTTTTGAAGTTTGAAGTATCTCTGG 58.070 34.615 0.00 0.00 0.00 3.86
4505 4723 6.240894 TGAAGTTTGAAGTATCTCTGGCATT 58.759 36.000 0.00 0.00 0.00 3.56
4534 4752 9.926158 ATGTTGCACTCATTATATGTTTTGAAA 57.074 25.926 0.00 0.00 0.00 2.69
4695 4961 2.944129 TCCTTCTGAAAACAACCCCAG 58.056 47.619 0.00 0.00 0.00 4.45
4843 5109 8.773645 TGTACTTGTTGTAATGTGATCAGAAAG 58.226 33.333 0.00 0.00 32.25 2.62
4848 5114 7.715657 TGTTGTAATGTGATCAGAAAGCTTTT 58.284 30.769 14.05 0.00 0.00 2.27
4865 5131 3.306973 GCTTTTGCCTTGACACTGAAAAC 59.693 43.478 0.00 0.00 40.15 2.43
4872 5138 4.034742 GCCTTGACACTGAAAACTAACGAA 59.965 41.667 0.00 0.00 0.00 3.85
4916 5182 2.029649 TCCTTGCTGCTGCTTGATTTTC 60.030 45.455 17.00 0.00 40.48 2.29
4937 5204 7.696992 TTTCTTTTTATTATCGCTGGAGGTT 57.303 32.000 0.00 0.00 0.00 3.50
4953 5220 2.119655 GTTCCTCGGCCTCTAGCGA 61.120 63.158 0.00 0.00 45.17 4.93
4962 5230 1.867865 GGCCTCTAGCGATAAGTTTGC 59.132 52.381 0.00 0.00 45.17 3.68
4963 5231 1.523095 GCCTCTAGCGATAAGTTTGCG 59.477 52.381 0.00 0.00 39.97 4.85
4997 5265 5.819991 TCCTGAGGCTGAATTTTCTTGTAT 58.180 37.500 0.00 0.00 0.00 2.29
5011 5279 5.592104 TTCTTGTATTCTCTGACGCCATA 57.408 39.130 0.00 0.00 0.00 2.74
5060 5328 6.479990 CCGCAAAGACATAATACAAGATGAGA 59.520 38.462 0.00 0.00 0.00 3.27
5062 5330 9.196552 CGCAAAGACATAATACAAGATGAGATA 57.803 33.333 0.00 0.00 0.00 1.98
5078 5346 2.891580 GAGATACCGCTTCCATGGAGTA 59.108 50.000 15.53 13.77 0.00 2.59
5130 5399 5.475564 TGTTCTAATGTTGGCTCCTTTAACC 59.524 40.000 0.00 0.00 0.00 2.85
5133 5402 2.286365 TGTTGGCTCCTTTAACCCAG 57.714 50.000 0.00 0.00 0.00 4.45
5145 5414 5.050490 CCTTTAACCCAGTGAGATGATACG 58.950 45.833 0.00 0.00 0.00 3.06
5156 5425 3.069289 GAGATGATACGCCATGCATTGA 58.931 45.455 1.13 0.00 0.00 2.57
5172 5441 4.989797 TGCATTGATGTGTGATTTTGGTTC 59.010 37.500 0.00 0.00 0.00 3.62
5203 5472 7.986085 ATTTCATTGATTTATACCCTCTCCG 57.014 36.000 0.00 0.00 0.00 4.63
5204 5473 5.483685 TCATTGATTTATACCCTCTCCGG 57.516 43.478 0.00 0.00 0.00 5.14
5205 5474 3.764237 TTGATTTATACCCTCTCCGGC 57.236 47.619 0.00 0.00 0.00 6.13
5206 5475 1.975680 TGATTTATACCCTCTCCGGCC 59.024 52.381 0.00 0.00 0.00 6.13
5207 5476 1.278413 GATTTATACCCTCTCCGGCCC 59.722 57.143 0.00 0.00 0.00 5.80
5208 5477 0.030909 TTTATACCCTCTCCGGCCCA 60.031 55.000 0.00 0.00 0.00 5.36
5209 5478 0.192566 TTATACCCTCTCCGGCCCAT 59.807 55.000 0.00 0.00 0.00 4.00
5210 5479 1.086565 TATACCCTCTCCGGCCCATA 58.913 55.000 0.00 0.00 0.00 2.74
5211 5480 0.192566 ATACCCTCTCCGGCCCATAA 59.807 55.000 0.00 0.00 0.00 1.90
5212 5481 0.192566 TACCCTCTCCGGCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
5213 5482 0.192566 ACCCTCTCCGGCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
5214 5483 1.203440 ACCCTCTCCGGCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
5215 5484 2.045326 ACCCTCTCCGGCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
5216 5485 3.112263 CCCTCTCCGGCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
5217 5486 3.134804 CCCTCTCCGGCCCATAATATAAG 59.865 52.174 0.00 0.00 0.00 1.73
5218 5487 4.030913 CCTCTCCGGCCCATAATATAAGA 58.969 47.826 0.00 0.00 0.00 2.10
5219 5488 4.100189 CCTCTCCGGCCCATAATATAAGAG 59.900 50.000 0.00 0.00 0.00 2.85
5220 5489 4.684724 TCTCCGGCCCATAATATAAGAGT 58.315 43.478 0.00 0.00 0.00 3.24
5221 5490 4.466370 TCTCCGGCCCATAATATAAGAGTG 59.534 45.833 0.00 0.00 0.00 3.51
5222 5491 4.164981 TCCGGCCCATAATATAAGAGTGT 58.835 43.478 0.00 0.00 0.00 3.55
5223 5492 4.595781 TCCGGCCCATAATATAAGAGTGTT 59.404 41.667 0.00 0.00 0.00 3.32
5224 5493 5.072600 TCCGGCCCATAATATAAGAGTGTTT 59.927 40.000 0.00 0.00 0.00 2.83
5225 5494 5.768164 CCGGCCCATAATATAAGAGTGTTTT 59.232 40.000 0.00 0.00 0.00 2.43
5226 5495 6.264518 CCGGCCCATAATATAAGAGTGTTTTT 59.735 38.462 0.00 0.00 0.00 1.94
5253 5522 5.881447 CACTAGTAGTGTCAATAACGCTCT 58.119 41.667 20.29 0.00 45.69 4.09
5254 5523 6.323266 CACTAGTAGTGTCAATAACGCTCTT 58.677 40.000 20.29 0.00 45.69 2.85
5255 5524 7.470079 CACTAGTAGTGTCAATAACGCTCTTA 58.530 38.462 20.29 0.00 45.69 2.10
5256 5525 8.129840 CACTAGTAGTGTCAATAACGCTCTTAT 58.870 37.037 20.29 0.00 45.69 1.73
5257 5526 9.334947 ACTAGTAGTGTCAATAACGCTCTTATA 57.665 33.333 0.85 0.00 45.69 0.98
5263 5532 9.424319 AGTGTCAATAACGCTCTTATATTATGG 57.576 33.333 0.00 0.00 45.69 2.74
5264 5533 8.656849 GTGTCAATAACGCTCTTATATTATGGG 58.343 37.037 0.00 0.00 35.42 4.00
5265 5534 8.590204 TGTCAATAACGCTCTTATATTATGGGA 58.410 33.333 0.00 0.00 0.00 4.37
5266 5535 9.601217 GTCAATAACGCTCTTATATTATGGGAT 57.399 33.333 0.00 0.00 0.00 3.85
5267 5536 9.599866 TCAATAACGCTCTTATATTATGGGATG 57.400 33.333 0.00 0.00 0.00 3.51
5268 5537 8.830580 CAATAACGCTCTTATATTATGGGATGG 58.169 37.037 0.00 0.00 0.00 3.51
5269 5538 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
5270 5539 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
5271 5540 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
5272 5541 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
5273 5542 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
5274 5543 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
5275 5544 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
5276 5545 7.961940 TCTTATATTATGGGATGGAGGGAGTA 58.038 38.462 0.00 0.00 0.00 2.59
5365 6949 8.317891 TGCATAGTTGTAACATATTTATCGGG 57.682 34.615 0.00 0.00 0.00 5.14
5366 6950 7.934665 TGCATAGTTGTAACATATTTATCGGGT 59.065 33.333 0.00 0.00 0.00 5.28
5367 6951 9.426837 GCATAGTTGTAACATATTTATCGGGTA 57.573 33.333 0.00 0.00 0.00 3.69
5371 6955 9.321562 AGTTGTAACATATTTATCGGGTACAAG 57.678 33.333 0.00 0.00 0.00 3.16
5372 6956 9.101655 GTTGTAACATATTTATCGGGTACAAGT 57.898 33.333 0.00 0.00 0.00 3.16
5374 6958 9.970395 TGTAACATATTTATCGGGTACAAGTAG 57.030 33.333 0.00 0.00 0.00 2.57
5375 6959 7.958053 AACATATTTATCGGGTACAAGTAGC 57.042 36.000 0.00 0.96 0.00 3.58
5376 6960 7.058023 ACATATTTATCGGGTACAAGTAGCA 57.942 36.000 11.07 0.00 35.41 3.49
5393 6977 7.654520 ACAAGTAGCACATAGTAGAACGAAAAA 59.345 33.333 0.00 0.00 0.00 1.94
5414 7002 1.988293 TGGCCGAACTTTTTCCATGA 58.012 45.000 0.00 0.00 0.00 3.07
5423 7011 7.757624 GCCGAACTTTTTCCATGAATGTTAATA 59.242 33.333 0.00 0.00 0.00 0.98
5450 7038 7.334171 GGCATTGCAACAACCTCTATTTATTTT 59.666 33.333 11.39 0.00 0.00 1.82
5451 7039 9.364989 GCATTGCAACAACCTCTATTTATTTTA 57.635 29.630 0.00 0.00 0.00 1.52
5549 7144 3.791320 TCAAGTGAACTCCTCCTATGGT 58.209 45.455 0.00 0.00 0.00 3.55
5553 7148 4.684724 AGTGAACTCCTCCTATGGTTACA 58.315 43.478 0.00 0.00 0.00 2.41
5566 7161 0.108992 GGTTACACATCGAGGCGTGA 60.109 55.000 16.61 0.00 36.91 4.35
5616 7219 4.479158 TGCTTTCTCCCTTTACCATGTTT 58.521 39.130 0.00 0.00 0.00 2.83
5617 7220 4.280677 TGCTTTCTCCCTTTACCATGTTTG 59.719 41.667 0.00 0.00 0.00 2.93
5618 7221 4.522789 GCTTTCTCCCTTTACCATGTTTGA 59.477 41.667 0.00 0.00 0.00 2.69
5619 7222 5.185828 GCTTTCTCCCTTTACCATGTTTGAT 59.814 40.000 0.00 0.00 0.00 2.57
5620 7223 6.295292 GCTTTCTCCCTTTACCATGTTTGATT 60.295 38.462 0.00 0.00 0.00 2.57
5740 7343 2.092538 AGGTCATGGAGGCAAGAATCTG 60.093 50.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.683933 AATCGAGGGAGTGCCGGT 60.684 61.111 1.90 0.00 33.83 5.28
108 112 1.874345 CTCACGCCAACTCCGGTACT 61.874 60.000 0.00 0.00 0.00 2.73
150 154 4.394078 CTCGTCGTCGGCGTGGAA 62.394 66.667 19.81 0.00 39.49 3.53
311 327 5.528690 GGAATTCTGCATACACATAGCTTCA 59.471 40.000 5.23 0.00 0.00 3.02
341 357 2.948315 CAGGAATCCTAAGCTTGGAAGC 59.052 50.000 11.99 3.00 41.72 3.86
383 399 3.060866 CCTCCGATTCGATCCCCC 58.939 66.667 7.83 0.00 0.00 5.40
384 400 2.344129 GCCTCCGATTCGATCCCC 59.656 66.667 7.83 0.00 0.00 4.81
385 401 2.049063 CGCCTCCGATTCGATCCC 60.049 66.667 7.83 0.00 36.29 3.85
459 475 1.076332 GTTGAAGTCACCCCGATTCG 58.924 55.000 0.00 0.00 0.00 3.34
465 481 2.112297 TGCGGTTGAAGTCACCCC 59.888 61.111 0.00 0.00 0.00 4.95
496 512 1.831286 ACGTCAGGGTGACTTCCGT 60.831 57.895 5.57 0.00 44.85 4.69
581 609 2.047274 CCCCGTACACCAGCACAG 60.047 66.667 0.00 0.00 0.00 3.66
591 619 2.832201 CCCGGTCTCTCCCCGTAC 60.832 72.222 0.00 0.00 43.98 3.67
603 631 4.387343 TCGGCCTACTTCCCCGGT 62.387 66.667 0.00 0.00 42.18 5.28
784 820 1.865865 CGTCCCCGATTATTCCACAG 58.134 55.000 0.00 0.00 35.63 3.66
841 877 0.866061 CCAGAATACTCACGCCGTCG 60.866 60.000 0.00 0.00 42.43 5.12
854 890 3.560251 CCGGATCGGCCCCAGAAT 61.560 66.667 0.00 0.00 41.17 2.40
865 901 0.601046 TGATGATGAAGCGCCGGATC 60.601 55.000 5.05 3.23 0.00 3.36
867 903 0.678950 TATGATGATGAAGCGCCGGA 59.321 50.000 5.05 0.00 0.00 5.14
868 904 1.073964 CTATGATGATGAAGCGCCGG 58.926 55.000 2.29 0.00 0.00 6.13
869 905 1.723542 GACTATGATGATGAAGCGCCG 59.276 52.381 2.29 0.00 0.00 6.46
880 916 6.700020 CGCTAGACTTTTGTTGACTATGATG 58.300 40.000 0.00 0.00 0.00 3.07
881 917 5.292101 GCGCTAGACTTTTGTTGACTATGAT 59.708 40.000 0.00 0.00 0.00 2.45
884 920 3.933332 GGCGCTAGACTTTTGTTGACTAT 59.067 43.478 7.64 0.00 0.00 2.12
885 921 3.323243 GGCGCTAGACTTTTGTTGACTA 58.677 45.455 7.64 0.00 0.00 2.59
886 922 2.143925 GGCGCTAGACTTTTGTTGACT 58.856 47.619 7.64 0.00 0.00 3.41
887 923 1.197036 GGGCGCTAGACTTTTGTTGAC 59.803 52.381 7.64 0.00 0.00 3.18
888 924 1.071699 AGGGCGCTAGACTTTTGTTGA 59.928 47.619 7.64 0.00 0.00 3.18
889 925 1.464997 GAGGGCGCTAGACTTTTGTTG 59.535 52.381 7.64 0.00 0.00 3.33
890 926 1.348036 AGAGGGCGCTAGACTTTTGTT 59.652 47.619 7.64 0.00 0.00 2.83
891 927 0.977395 AGAGGGCGCTAGACTTTTGT 59.023 50.000 7.64 0.00 0.00 2.83
892 928 1.205893 AGAGAGGGCGCTAGACTTTTG 59.794 52.381 7.64 0.00 0.00 2.44
904 940 0.544223 GGGGAAAAGAGAGAGAGGGC 59.456 60.000 0.00 0.00 0.00 5.19
1323 1374 3.170127 CCGTTTATGTCGCGGCAA 58.830 55.556 21.03 4.17 38.99 4.52
1401 1452 2.088423 AGTTTCTCGAGCTGACGATCT 58.912 47.619 7.81 0.00 41.39 2.75
1407 1458 0.667487 CGGCAAGTTTCTCGAGCTGA 60.667 55.000 7.81 0.00 33.54 4.26
1419 1470 4.217112 AGGAAGTCCTCGGCAAGT 57.783 55.556 0.00 0.00 44.77 3.16
1488 1539 5.708697 TCGGTACTTCTCAAGATACTTGTCA 59.291 40.000 10.56 0.00 0.00 3.58
1497 1548 4.620803 GCATCCTTTCGGTACTTCTCAAGA 60.621 45.833 0.00 0.00 0.00 3.02
1512 1563 1.451028 GCAGCTCTCGGCATCCTTT 60.451 57.895 0.00 0.00 44.79 3.11
1947 2017 7.067372 ACCACCAATATATCATGTTTGTCACAG 59.933 37.037 0.00 0.00 39.40 3.66
2038 2108 3.999663 CTCATCCCTCAACTGACTGAAAC 59.000 47.826 0.00 0.00 0.00 2.78
2099 2169 9.578576 TGCTTGATTATATTAGCTTCCTGAAAT 57.421 29.630 0.00 0.00 34.77 2.17
2131 2201 4.687948 CACACAGTCCAGTATTCTTCAGTG 59.312 45.833 0.00 0.00 0.00 3.66
2140 2210 6.360370 AGAATAACACACACAGTCCAGTAT 57.640 37.500 0.00 0.00 0.00 2.12
2142 2212 4.689612 AGAATAACACACACAGTCCAGT 57.310 40.909 0.00 0.00 0.00 4.00
2193 2263 1.962807 TGCCCATCCTGAAACAAGTTG 59.037 47.619 0.00 0.00 0.00 3.16
2203 2273 4.619160 GCTACTTTCTTTTTGCCCATCCTG 60.619 45.833 0.00 0.00 0.00 3.86
2215 2285 6.817641 CACTCTCATCATCTGCTACTTTCTTT 59.182 38.462 0.00 0.00 0.00 2.52
2266 2336 1.947678 GCATCTGCCCCCTCATTATCG 60.948 57.143 0.00 0.00 34.31 2.92
2278 2348 1.202452 GCTATGGGTTTTGCATCTGCC 60.202 52.381 0.00 0.00 41.18 4.85
2330 2400 4.610333 ACCTTTTCCTCCTCACTTTTGTT 58.390 39.130 0.00 0.00 0.00 2.83
2347 2417 3.515602 ACTGAAGCCAGATCAACCTTT 57.484 42.857 0.00 0.00 43.02 3.11
2429 2499 5.649782 TCCTGAAGAGCATTTCCATTTTC 57.350 39.130 0.00 0.00 0.00 2.29
2494 2564 3.181454 CCTCACACTCCAAACTACCTTGT 60.181 47.826 0.00 0.00 0.00 3.16
2495 2565 3.403038 CCTCACACTCCAAACTACCTTG 58.597 50.000 0.00 0.00 0.00 3.61
2496 2566 2.372172 CCCTCACACTCCAAACTACCTT 59.628 50.000 0.00 0.00 0.00 3.50
2560 2630 5.073311 TCTTACCAATCTCAGAAGTTCCG 57.927 43.478 0.00 0.00 0.00 4.30
2697 2767 2.936498 CCGGTGTTATCCACATCTGTTC 59.064 50.000 0.00 0.00 46.44 3.18
2763 2833 7.283127 TGTTATTTACATCAGCAGATTCTTCCC 59.717 37.037 0.00 0.00 30.20 3.97
2764 2834 8.213518 TGTTATTTACATCAGCAGATTCTTCC 57.786 34.615 0.00 0.00 30.20 3.46
2871 2941 6.183361 TGTGGTGATAAATATGTACCCAGAGG 60.183 42.308 0.00 0.00 40.04 3.69
2872 2942 6.826668 TGTGGTGATAAATATGTACCCAGAG 58.173 40.000 0.00 0.00 0.00 3.35
2873 2943 6.385759 ACTGTGGTGATAAATATGTACCCAGA 59.614 38.462 17.32 0.00 35.32 3.86
2874 2944 6.591935 ACTGTGGTGATAAATATGTACCCAG 58.408 40.000 0.00 0.00 36.57 4.45
2875 2945 6.569127 ACTGTGGTGATAAATATGTACCCA 57.431 37.500 0.00 0.00 0.00 4.51
2876 2946 7.988599 TGTAACTGTGGTGATAAATATGTACCC 59.011 37.037 0.00 0.00 0.00 3.69
2877 2947 8.951787 TGTAACTGTGGTGATAAATATGTACC 57.048 34.615 0.00 0.00 0.00 3.34
2950 3056 7.276438 GCCTAGAGCAACATTTCCTTTTATTTG 59.724 37.037 0.00 0.00 42.97 2.32
3011 3117 5.878406 ATTGGTACTAGCAGCTGACTTAT 57.122 39.130 20.43 8.24 0.00 1.73
3056 3162 9.965824 CACTGTGATAGTATGACATGTGTATAA 57.034 33.333 1.15 0.00 37.60 0.98
3080 3186 7.707893 TCTGGTTTAAGTAACTTGTACTGTCAC 59.292 37.037 0.00 0.00 36.93 3.67
3125 3231 6.322969 TGAATGCTATTTGGATGAGCTGAAAT 59.677 34.615 0.00 0.00 37.12 2.17
3133 3239 6.131264 AGAACCATGAATGCTATTTGGATGA 58.869 36.000 0.00 0.00 0.00 2.92
3219 3325 8.057623 AGATAAATTGGCCATAGAATAGGATGG 58.942 37.037 6.09 0.00 44.73 3.51
3234 3340 5.979517 GCACCTCATGTAAAGATAAATTGGC 59.020 40.000 0.00 0.00 0.00 4.52
3283 3389 9.948964 TGAGTACAATATATATGAGCTTTGCAT 57.051 29.630 0.00 0.00 0.00 3.96
3284 3390 9.948964 ATGAGTACAATATATATGAGCTTTGCA 57.051 29.630 0.00 0.00 0.00 4.08
3303 3426 5.692204 ACGAGCTAATTATGCACATGAGTAC 59.308 40.000 0.00 0.00 0.00 2.73
3305 3428 4.509230 CACGAGCTAATTATGCACATGAGT 59.491 41.667 0.00 0.00 0.00 3.41
3306 3429 4.509230 ACACGAGCTAATTATGCACATGAG 59.491 41.667 0.00 0.00 0.00 2.90
3307 3430 4.441792 ACACGAGCTAATTATGCACATGA 58.558 39.130 0.00 0.00 0.00 3.07
3308 3431 4.801147 ACACGAGCTAATTATGCACATG 57.199 40.909 0.00 0.00 0.00 3.21
3310 3433 5.257082 TCTACACGAGCTAATTATGCACA 57.743 39.130 0.00 0.00 0.00 4.57
3311 3434 5.749109 AGTTCTACACGAGCTAATTATGCAC 59.251 40.000 0.00 3.24 30.74 4.57
3455 3607 6.519679 AATACACCAATACTGACGTAGACA 57.480 37.500 0.00 0.00 0.00 3.41
3456 3608 6.810182 ACAAATACACCAATACTGACGTAGAC 59.190 38.462 0.00 0.00 0.00 2.59
3457 3609 6.927416 ACAAATACACCAATACTGACGTAGA 58.073 36.000 0.00 0.00 0.00 2.59
3458 3610 7.591006 AACAAATACACCAATACTGACGTAG 57.409 36.000 0.00 0.00 0.00 3.51
3459 3611 7.656542 TCAAACAAATACACCAATACTGACGTA 59.343 33.333 0.00 0.00 0.00 3.57
3460 3612 6.483974 TCAAACAAATACACCAATACTGACGT 59.516 34.615 0.00 0.00 0.00 4.34
3461 3613 6.893759 TCAAACAAATACACCAATACTGACG 58.106 36.000 0.00 0.00 0.00 4.35
3509 3661 8.607441 AAAGCAGCGACAATTAATATAGATCA 57.393 30.769 0.00 0.00 0.00 2.92
3514 3666 9.929722 CTTTGTAAAGCAGCGACAATTAATATA 57.070 29.630 10.29 0.00 33.33 0.86
3531 3683 6.849305 CGCAGGTTTAGTACAACTTTGTAAAG 59.151 38.462 3.38 2.94 44.46 1.85
3553 3705 4.888917 TCCGATCCATATTAATTGTCGCA 58.111 39.130 0.00 0.00 0.00 5.10
3659 3811 3.278574 CAACTTGTCACCAAAGACTCCA 58.721 45.455 0.00 0.00 39.27 3.86
3745 3897 8.977267 AGATAAGAGAGAAGAATTTTGATGGG 57.023 34.615 0.00 0.00 0.00 4.00
3786 3938 4.074970 AGTGATGATTCAACTTGTCACCC 58.925 43.478 11.78 0.00 37.31 4.61
3806 3958 3.119388 TGCAAAACGCGGACTACTATAGT 60.119 43.478 12.47 10.87 46.97 2.12
3818 3972 1.663643 TCCTAAGCTATGCAAAACGCG 59.336 47.619 3.53 3.53 46.97 6.01
3899 4053 9.984590 GGAGTACTAGAATAGGGAGAAATAGAT 57.015 37.037 0.00 0.00 44.97 1.98
3930 4084 3.841643 TCTTCGACAAGTATTTCGGGAC 58.158 45.455 0.00 0.00 35.89 4.46
3931 4085 3.760151 TCTCTTCGACAAGTATTTCGGGA 59.240 43.478 0.00 0.00 35.89 5.14
3932 4086 4.106029 TCTCTTCGACAAGTATTTCGGG 57.894 45.455 0.00 0.00 35.89 5.14
3933 4087 4.504461 CCATCTCTTCGACAAGTATTTCGG 59.496 45.833 0.00 0.00 35.89 4.30
3934 4088 5.340803 TCCATCTCTTCGACAAGTATTTCG 58.659 41.667 0.00 0.00 36.55 3.46
3935 4089 8.873215 TTATCCATCTCTTCGACAAGTATTTC 57.127 34.615 0.00 0.00 0.00 2.17
3936 4090 9.667107 TTTTATCCATCTCTTCGACAAGTATTT 57.333 29.630 0.00 0.00 0.00 1.40
3937 4091 9.838339 ATTTTATCCATCTCTTCGACAAGTATT 57.162 29.630 0.00 0.00 0.00 1.89
3938 4092 9.838339 AATTTTATCCATCTCTTCGACAAGTAT 57.162 29.630 0.00 0.00 0.00 2.12
3939 4093 9.098355 CAATTTTATCCATCTCTTCGACAAGTA 57.902 33.333 0.00 0.00 0.00 2.24
3940 4094 7.066284 CCAATTTTATCCATCTCTTCGACAAGT 59.934 37.037 0.00 0.00 0.00 3.16
3941 4095 7.280876 TCCAATTTTATCCATCTCTTCGACAAG 59.719 37.037 0.00 0.00 0.00 3.16
3942 4096 7.109501 TCCAATTTTATCCATCTCTTCGACAA 58.890 34.615 0.00 0.00 0.00 3.18
3943 4097 6.649155 TCCAATTTTATCCATCTCTTCGACA 58.351 36.000 0.00 0.00 0.00 4.35
3944 4098 7.579726 CATCCAATTTTATCCATCTCTTCGAC 58.420 38.462 0.00 0.00 0.00 4.20
3945 4099 6.205464 GCATCCAATTTTATCCATCTCTTCGA 59.795 38.462 0.00 0.00 0.00 3.71
3946 4100 6.016860 TGCATCCAATTTTATCCATCTCTTCG 60.017 38.462 0.00 0.00 0.00 3.79
3947 4101 7.281040 TGCATCCAATTTTATCCATCTCTTC 57.719 36.000 0.00 0.00 0.00 2.87
3948 4102 7.728981 AGATGCATCCAATTTTATCCATCTCTT 59.271 33.333 23.06 0.00 34.70 2.85
3949 4103 7.239438 AGATGCATCCAATTTTATCCATCTCT 58.761 34.615 23.06 0.00 34.70 3.10
3950 4104 7.463961 AGATGCATCCAATTTTATCCATCTC 57.536 36.000 23.06 0.00 34.70 2.75
3954 4108 9.812347 AGTTATAGATGCATCCAATTTTATCCA 57.188 29.630 23.06 1.94 0.00 3.41
3963 4117 9.772973 ACGTATTTTAGTTATAGATGCATCCAA 57.227 29.630 23.06 12.25 0.00 3.53
3964 4118 9.419297 GACGTATTTTAGTTATAGATGCATCCA 57.581 33.333 23.06 10.57 0.00 3.41
3965 4119 9.640963 AGACGTATTTTAGTTATAGATGCATCC 57.359 33.333 23.06 7.42 0.00 3.51
3981 4135 9.838339 AGAAATGGATGAATCTAGACGTATTTT 57.162 29.630 0.00 0.00 0.00 1.82
3982 4136 9.838339 AAGAAATGGATGAATCTAGACGTATTT 57.162 29.630 0.00 0.00 0.00 1.40
3983 4137 9.482627 GAAGAAATGGATGAATCTAGACGTATT 57.517 33.333 0.00 0.00 0.00 1.89
3984 4138 7.810282 CGAAGAAATGGATGAATCTAGACGTAT 59.190 37.037 0.00 0.00 0.00 3.06
3985 4139 7.012989 TCGAAGAAATGGATGAATCTAGACGTA 59.987 37.037 0.00 0.00 0.00 3.57
3986 4140 5.980116 CGAAGAAATGGATGAATCTAGACGT 59.020 40.000 0.00 0.00 0.00 4.34
3987 4141 6.143118 GTCGAAGAAATGGATGAATCTAGACG 59.857 42.308 0.00 0.00 39.69 4.18
3988 4142 6.980978 TGTCGAAGAAATGGATGAATCTAGAC 59.019 38.462 0.00 0.00 39.69 2.59
3989 4143 7.112452 TGTCGAAGAAATGGATGAATCTAGA 57.888 36.000 0.00 0.00 39.69 2.43
3990 4144 7.493971 ACTTGTCGAAGAAATGGATGAATCTAG 59.506 37.037 0.00 0.00 39.69 2.43
3991 4145 7.331026 ACTTGTCGAAGAAATGGATGAATCTA 58.669 34.615 0.00 0.00 39.69 1.98
3992 4146 6.176183 ACTTGTCGAAGAAATGGATGAATCT 58.824 36.000 0.00 0.00 39.69 2.40
3993 4147 6.428385 ACTTGTCGAAGAAATGGATGAATC 57.572 37.500 0.00 0.00 39.69 2.52
3994 4148 8.511604 AATACTTGTCGAAGAAATGGATGAAT 57.488 30.769 0.00 0.00 39.69 2.57
3995 4149 7.921786 AATACTTGTCGAAGAAATGGATGAA 57.078 32.000 0.00 0.00 39.69 2.57
3996 4150 7.824289 AGAAATACTTGTCGAAGAAATGGATGA 59.176 33.333 0.00 0.00 39.69 2.92
3997 4151 7.907045 CAGAAATACTTGTCGAAGAAATGGATG 59.093 37.037 0.00 0.00 39.69 3.51
3998 4152 7.066284 CCAGAAATACTTGTCGAAGAAATGGAT 59.934 37.037 0.00 0.00 39.69 3.41
3999 4153 6.371548 CCAGAAATACTTGTCGAAGAAATGGA 59.628 38.462 0.00 0.00 39.69 3.41
4000 4154 6.371548 TCCAGAAATACTTGTCGAAGAAATGG 59.628 38.462 0.00 0.00 39.69 3.16
4001 4155 7.237173 GTCCAGAAATACTTGTCGAAGAAATG 58.763 38.462 0.00 0.00 39.69 2.32
4002 4156 6.090898 CGTCCAGAAATACTTGTCGAAGAAAT 59.909 38.462 0.00 0.00 39.69 2.17
4003 4157 5.404366 CGTCCAGAAATACTTGTCGAAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
4004 4158 4.921515 CGTCCAGAAATACTTGTCGAAGAA 59.078 41.667 0.00 0.00 39.69 2.52
4005 4159 4.482386 CGTCCAGAAATACTTGTCGAAGA 58.518 43.478 0.00 0.00 32.98 2.87
4006 4160 3.612860 CCGTCCAGAAATACTTGTCGAAG 59.387 47.826 0.00 0.00 35.07 3.79
4007 4161 3.256383 TCCGTCCAGAAATACTTGTCGAA 59.744 43.478 0.00 0.00 0.00 3.71
4008 4162 2.821378 TCCGTCCAGAAATACTTGTCGA 59.179 45.455 0.00 0.00 0.00 4.20
4009 4163 3.179830 CTCCGTCCAGAAATACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
4010 4164 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
4011 4165 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
4012 4166 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
4013 4167 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
4014 4168 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
4015 4169 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
4016 4170 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
4017 4171 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
4018 4172 2.024273 AGATACTCCCTCCGTCCAGAAA 60.024 50.000 0.00 0.00 0.00 2.52
4019 4173 1.569548 AGATACTCCCTCCGTCCAGAA 59.430 52.381 0.00 0.00 0.00 3.02
4020 4174 1.143277 GAGATACTCCCTCCGTCCAGA 59.857 57.143 0.00 0.00 0.00 3.86
4021 4175 1.611519 GAGATACTCCCTCCGTCCAG 58.388 60.000 0.00 0.00 0.00 3.86
4022 4176 0.179026 CGAGATACTCCCTCCGTCCA 60.179 60.000 0.00 0.00 0.00 4.02
4023 4177 0.179023 ACGAGATACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
4024 4178 2.540265 TACGAGATACTCCCTCCGTC 57.460 55.000 0.00 0.00 0.00 4.79
4025 4179 2.290197 GGATACGAGATACTCCCTCCGT 60.290 54.545 0.00 0.00 0.00 4.69
4026 4180 2.027007 AGGATACGAGATACTCCCTCCG 60.027 54.545 0.00 0.00 46.39 4.63
4027 4181 3.724732 AGGATACGAGATACTCCCTCC 57.275 52.381 0.00 0.00 46.39 4.30
4028 4182 4.653868 TGAAGGATACGAGATACTCCCTC 58.346 47.826 0.00 0.00 46.39 4.30
4029 4183 4.726035 TGAAGGATACGAGATACTCCCT 57.274 45.455 0.00 0.00 46.39 4.20
4030 4184 4.381079 GCATGAAGGATACGAGATACTCCC 60.381 50.000 0.00 0.00 46.39 4.30
4031 4185 4.461081 AGCATGAAGGATACGAGATACTCC 59.539 45.833 0.00 0.00 46.39 3.85
4032 4186 5.048364 ACAGCATGAAGGATACGAGATACTC 60.048 44.000 0.00 0.00 39.69 2.59
4033 4187 4.830046 ACAGCATGAAGGATACGAGATACT 59.170 41.667 0.00 0.00 39.69 2.12
4034 4188 4.920340 CACAGCATGAAGGATACGAGATAC 59.080 45.833 0.00 0.00 39.69 2.24
4035 4189 4.559502 GCACAGCATGAAGGATACGAGATA 60.560 45.833 0.00 0.00 39.69 1.98
4036 4190 3.801638 GCACAGCATGAAGGATACGAGAT 60.802 47.826 0.00 0.00 39.69 2.75
4065 4225 6.313519 ACTTGTTAAATGATAGAGGGCAGA 57.686 37.500 0.00 0.00 0.00 4.26
4108 4268 4.290093 AGTGTGGAGCTGGATATGTCTTA 58.710 43.478 0.00 0.00 0.00 2.10
4115 4275 3.197766 CCAAAGTAGTGTGGAGCTGGATA 59.802 47.826 0.00 0.00 37.03 2.59
4116 4276 2.026822 CCAAAGTAGTGTGGAGCTGGAT 60.027 50.000 0.00 0.00 37.03 3.41
4150 4310 7.643123 ACCAAACATAAGGAGGACATTAGAAT 58.357 34.615 0.00 0.00 0.00 2.40
4172 4332 7.060421 GGAAATTTGGAATAGAGGATGTACCA 58.940 38.462 0.00 0.00 42.04 3.25
4173 4333 7.229506 CAGGAAATTTGGAATAGAGGATGTACC 59.770 40.741 0.00 0.00 39.35 3.34
4179 4339 7.032598 ACTTCAGGAAATTTGGAATAGAGGA 57.967 36.000 0.00 0.00 0.00 3.71
4185 4345 6.950619 AGCTAGAACTTCAGGAAATTTGGAAT 59.049 34.615 0.00 0.00 0.00 3.01
4505 4723 9.356433 CAAAACATATAATGAGTGCAACATGAA 57.644 29.630 0.00 1.99 41.43 2.57
4695 4961 5.392057 GCAGCTTCTTTGGTAGTTTATCCAC 60.392 44.000 0.00 0.00 33.12 4.02
4843 5109 2.869233 TTCAGTGTCAAGGCAAAAGC 57.131 45.000 0.00 0.00 0.00 3.51
4848 5114 3.311322 CGTTAGTTTTCAGTGTCAAGGCA 59.689 43.478 0.00 0.00 0.00 4.75
4855 5121 6.761714 ACAGAGATTTCGTTAGTTTTCAGTGT 59.238 34.615 0.00 0.00 0.00 3.55
4872 5138 6.874134 GGAACGGCATAATACATACAGAGATT 59.126 38.462 0.00 0.00 0.00 2.40
4891 5157 2.263741 AAGCAGCAGCAAGGAACGG 61.264 57.895 3.17 0.00 45.49 4.44
4916 5182 5.823045 AGGAACCTCCAGCGATAATAAAAAG 59.177 40.000 0.00 0.00 39.61 2.27
4937 5204 0.109913 TTATCGCTAGAGGCCGAGGA 59.890 55.000 0.00 0.00 37.74 3.71
4953 5220 5.532406 AGGATATGTGAATGCGCAAACTTAT 59.468 36.000 17.11 19.19 38.16 1.73
4962 5230 1.802960 GCCTCAGGATATGTGAATGCG 59.197 52.381 0.00 0.00 0.00 4.73
4963 5231 2.812591 CAGCCTCAGGATATGTGAATGC 59.187 50.000 0.00 0.00 0.00 3.56
5011 5279 9.703892 CGGAGATTAAGTTCTGATAATCTGATT 57.296 33.333 13.84 8.14 44.70 2.57
5060 5328 2.958818 TCTACTCCATGGAAGCGGTAT 58.041 47.619 17.00 0.00 0.00 2.73
5062 5330 1.207329 GTTCTACTCCATGGAAGCGGT 59.793 52.381 17.00 12.55 0.00 5.68
5078 5346 9.739276 TGAAAATCACAACAATAGATAGGTTCT 57.261 29.630 0.00 0.00 38.57 3.01
5130 5399 2.410939 CATGGCGTATCATCTCACTGG 58.589 52.381 0.00 0.00 0.00 4.00
5133 5402 1.869774 TGCATGGCGTATCATCTCAC 58.130 50.000 0.00 0.00 0.00 3.51
5145 5414 2.882927 ATCACACATCAATGCATGGC 57.117 45.000 0.00 0.00 0.00 4.40
5195 5464 1.584724 ATATTATGGGCCGGAGAGGG 58.415 55.000 5.05 0.00 41.48 4.30
5196 5465 4.030913 TCTTATATTATGGGCCGGAGAGG 58.969 47.826 5.05 0.00 44.97 3.69
5197 5466 4.712337 ACTCTTATATTATGGGCCGGAGAG 59.288 45.833 5.05 6.22 35.45 3.20
5198 5467 4.466370 CACTCTTATATTATGGGCCGGAGA 59.534 45.833 5.05 0.00 0.00 3.71
5199 5468 4.223032 ACACTCTTATATTATGGGCCGGAG 59.777 45.833 5.05 0.00 0.00 4.63
5200 5469 4.164981 ACACTCTTATATTATGGGCCGGA 58.835 43.478 5.05 0.00 0.00 5.14
5201 5470 4.553330 ACACTCTTATATTATGGGCCGG 57.447 45.455 0.00 0.00 0.00 6.13
5202 5471 6.877611 AAAACACTCTTATATTATGGGCCG 57.122 37.500 0.00 0.00 0.00 6.13
5231 5500 6.512342 AAGAGCGTTATTGACACTACTAGT 57.488 37.500 0.00 0.00 0.00 2.57
5237 5506 9.424319 CCATAATATAAGAGCGTTATTGACACT 57.576 33.333 0.40 0.00 0.00 3.55
5238 5507 8.656849 CCCATAATATAAGAGCGTTATTGACAC 58.343 37.037 0.40 0.00 0.00 3.67
5239 5508 8.590204 TCCCATAATATAAGAGCGTTATTGACA 58.410 33.333 0.40 0.00 0.00 3.58
5240 5509 8.997621 TCCCATAATATAAGAGCGTTATTGAC 57.002 34.615 0.40 0.00 0.00 3.18
5241 5510 9.599866 CATCCCATAATATAAGAGCGTTATTGA 57.400 33.333 0.40 0.00 0.00 2.57
5242 5511 8.830580 CCATCCCATAATATAAGAGCGTTATTG 58.169 37.037 0.40 0.00 0.00 1.90
5243 5512 8.768397 TCCATCCCATAATATAAGAGCGTTATT 58.232 33.333 0.40 0.00 0.00 1.40
5244 5513 8.319057 TCCATCCCATAATATAAGAGCGTTAT 57.681 34.615 0.79 0.79 0.00 1.89
5245 5514 7.147724 CCTCCATCCCATAATATAAGAGCGTTA 60.148 40.741 0.00 0.00 0.00 3.18
5246 5515 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
5247 5516 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
5248 5517 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
5249 5518 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
5250 5519 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
5251 5520 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
5252 5521 8.805145 ATACTCCCTCCATCCCATAATATAAG 57.195 38.462 0.00 0.00 0.00 1.73
5257 5526 9.764776 AATATAATACTCCCTCCATCCCATAAT 57.235 33.333 0.00 0.00 0.00 1.28
5258 5527 9.588432 AAATATAATACTCCCTCCATCCCATAA 57.412 33.333 0.00 0.00 0.00 1.90
5259 5528 9.003145 CAAATATAATACTCCCTCCATCCCATA 57.997 37.037 0.00 0.00 0.00 2.74
5260 5529 7.465563 ACAAATATAATACTCCCTCCATCCCAT 59.534 37.037 0.00 0.00 0.00 4.00
5261 5530 6.797540 ACAAATATAATACTCCCTCCATCCCA 59.202 38.462 0.00 0.00 0.00 4.37
5262 5531 7.272144 ACAAATATAATACTCCCTCCATCCC 57.728 40.000 0.00 0.00 0.00 3.85
5263 5532 9.838339 CATACAAATATAATACTCCCTCCATCC 57.162 37.037 0.00 0.00 0.00 3.51
5353 6937 6.926826 TGTGCTACTTGTACCCGATAAATATG 59.073 38.462 0.00 0.00 0.00 1.78
5365 6949 6.779117 TCGTTCTACTATGTGCTACTTGTAC 58.221 40.000 0.00 0.00 0.00 2.90
5366 6950 6.990341 TCGTTCTACTATGTGCTACTTGTA 57.010 37.500 0.00 0.00 0.00 2.41
5367 6951 5.892160 TCGTTCTACTATGTGCTACTTGT 57.108 39.130 0.00 0.00 0.00 3.16
5368 6952 7.576750 TTTTCGTTCTACTATGTGCTACTTG 57.423 36.000 0.00 0.00 0.00 3.16
5393 6977 2.896685 TCATGGAAAAAGTTCGGCCATT 59.103 40.909 2.24 0.00 37.24 3.16
5394 6978 2.524306 TCATGGAAAAAGTTCGGCCAT 58.476 42.857 2.24 0.00 39.81 4.40
5395 6979 1.988293 TCATGGAAAAAGTTCGGCCA 58.012 45.000 2.24 0.00 34.28 5.36
5396 6980 3.253230 CATTCATGGAAAAAGTTCGGCC 58.747 45.455 0.00 0.00 34.28 6.13
5397 6981 3.913089 ACATTCATGGAAAAAGTTCGGC 58.087 40.909 0.00 0.00 34.28 5.54
5398 6982 9.289303 CTATTAACATTCATGGAAAAAGTTCGG 57.711 33.333 0.00 0.00 34.28 4.30
5399 6983 9.289303 CCTATTAACATTCATGGAAAAAGTTCG 57.711 33.333 0.00 0.00 34.28 3.95
5401 6985 8.592809 TGCCTATTAACATTCATGGAAAAAGTT 58.407 29.630 0.00 0.00 0.00 2.66
5402 6986 8.133024 TGCCTATTAACATTCATGGAAAAAGT 57.867 30.769 0.00 0.00 0.00 2.66
5414 7002 5.874261 GGTTGTTGCAATGCCTATTAACATT 59.126 36.000 0.59 0.00 36.96 2.71
5423 7011 2.584835 TAGAGGTTGTTGCAATGCCT 57.415 45.000 16.03 16.03 0.00 4.75
5450 7038 6.441093 ACGACGTATTCACCAAAGTCTATA 57.559 37.500 0.00 0.00 0.00 1.31
5451 7039 5.320549 ACGACGTATTCACCAAAGTCTAT 57.679 39.130 0.00 0.00 0.00 1.98
5452 7040 4.771590 ACGACGTATTCACCAAAGTCTA 57.228 40.909 0.00 0.00 0.00 2.59
5453 7041 3.655276 ACGACGTATTCACCAAAGTCT 57.345 42.857 0.00 0.00 0.00 3.24
5454 7042 4.556523 GTCTACGACGTATTCACCAAAGTC 59.443 45.833 8.39 0.00 0.00 3.01
5455 7043 4.217118 AGTCTACGACGTATTCACCAAAGT 59.783 41.667 8.39 0.00 37.67 2.66
5456 7044 4.730657 AGTCTACGACGTATTCACCAAAG 58.269 43.478 8.39 0.00 37.67 2.77
5501 7095 3.753272 GTCTGGAGAAATTTAGCACAGCA 59.247 43.478 0.00 0.00 0.00 4.41
5549 7144 0.457853 GCTCACGCCTCGATGTGTAA 60.458 55.000 6.58 0.00 37.38 2.41
5553 7148 2.125912 GTGCTCACGCCTCGATGT 60.126 61.111 0.00 0.00 34.43 3.06
5570 7165 1.361668 CGCAACCGAGACCTGAATGG 61.362 60.000 0.00 0.00 38.16 3.16
5573 7168 2.357034 GCGCAACCGAGACCTGAA 60.357 61.111 0.30 0.00 36.29 3.02
5577 7172 1.082104 CAAAAGCGCAACCGAGACC 60.082 57.895 11.47 0.00 36.29 3.85
5616 7219 3.435327 CCAAGACCGTTTCGAATCAATCA 59.565 43.478 0.00 0.00 0.00 2.57
5617 7220 3.682858 TCCAAGACCGTTTCGAATCAATC 59.317 43.478 0.00 0.00 0.00 2.67
5618 7221 3.670625 TCCAAGACCGTTTCGAATCAAT 58.329 40.909 0.00 0.00 0.00 2.57
5619 7222 3.114668 TCCAAGACCGTTTCGAATCAA 57.885 42.857 0.00 0.00 0.00 2.57
5620 7223 2.823924 TCCAAGACCGTTTCGAATCA 57.176 45.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.