Multiple sequence alignment - TraesCS3B01G299200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G299200 chr3B 100.000 2635 0 0 1 2635 479987031 479984397 0.000000e+00 4867.0
1 TraesCS3B01G299200 chr3B 90.833 240 16 5 209 443 69363141 69363379 1.520000e-82 316.0
2 TraesCS3B01G299200 chr3B 82.178 303 29 10 2358 2635 338896202 338895900 1.220000e-58 237.0
3 TraesCS3B01G299200 chr3D 87.529 1700 99 48 702 2358 368951809 368950180 0.000000e+00 1860.0
4 TraesCS3B01G299200 chr3A 88.160 1571 91 32 721 2249 490338218 490336701 0.000000e+00 1783.0
5 TraesCS3B01G299200 chr3A 95.000 40 2 0 25 64 490338717 490338678 2.190000e-06 63.9
6 TraesCS3B01G299200 chr3A 75.000 148 20 9 2213 2358 105557894 105557762 5.000000e-03 52.8
7 TraesCS3B01G299200 chr6D 96.394 416 15 0 1064 1479 116345403 116344988 0.000000e+00 686.0
8 TraesCS3B01G299200 chr6A 95.519 424 18 1 1064 1486 144528859 144528436 0.000000e+00 676.0
9 TraesCS3B01G299200 chr1A 95.204 417 19 1 1064 1479 468599195 468598779 0.000000e+00 658.0
10 TraesCS3B01G299200 chr1A 100.000 28 0 0 2213 2240 554481324 554481351 5.000000e-03 52.8
11 TraesCS3B01G299200 chr4A 95.377 411 19 0 1064 1474 48275453 48275863 0.000000e+00 654.0
12 TraesCS3B01G299200 chr4A 95.377 411 19 0 1064 1474 675854943 675855353 0.000000e+00 654.0
13 TraesCS3B01G299200 chr4A 91.241 137 12 0 565 701 604666901 604667037 1.250000e-43 187.0
14 TraesCS3B01G299200 chrUn 95.146 412 20 0 1063 1474 84317793 84317382 0.000000e+00 651.0
15 TraesCS3B01G299200 chr4D 93.488 430 26 2 1064 1492 415583723 415583295 2.860000e-179 638.0
16 TraesCS3B01G299200 chr4D 92.105 38 1 2 2213 2250 206915510 206915475 5.000000e-03 52.8
17 TraesCS3B01G299200 chr4D 92.105 38 1 2 2213 2250 338510207 338510172 5.000000e-03 52.8
18 TraesCS3B01G299200 chr5B 90.083 242 18 2 208 443 544182186 544182427 2.550000e-80 309.0
19 TraesCS3B01G299200 chr5B 90.868 219 14 2 225 443 139409589 139409801 3.320000e-74 289.0
20 TraesCS3B01G299200 chr5B 96.947 131 4 0 208 338 656801620 656801750 1.230000e-53 220.0
21 TraesCS3B01G299200 chr5B 96.212 132 5 0 209 340 149313660 149313529 1.590000e-52 217.0
22 TraesCS3B01G299200 chr5B 96.183 131 5 0 208 338 592854285 592854155 5.710000e-52 215.0
23 TraesCS3B01G299200 chr5B 87.791 172 12 5 318 484 513616313 513616480 2.680000e-45 193.0
24 TraesCS3B01G299200 chr5B 85.714 91 11 2 525 613 659604235 659604145 7.760000e-16 95.3
25 TraesCS3B01G299200 chr1B 89.024 246 22 1 209 449 321874090 321873845 1.530000e-77 300.0
26 TraesCS3B01G299200 chr1B 100.000 28 0 0 2213 2240 633716039 633716066 5.000000e-03 52.8
27 TraesCS3B01G299200 chr7D 84.665 313 22 12 2348 2635 201158483 201158794 3.320000e-74 289.0
28 TraesCS3B01G299200 chr7B 92.935 184 12 1 521 703 640524783 640524600 1.550000e-67 267.0
29 TraesCS3B01G299200 chr7B 92.265 181 13 1 524 703 640583261 640583081 3.370000e-64 255.0
30 TraesCS3B01G299200 chr7B 95.513 156 6 1 520 674 648112766 648112611 5.630000e-62 248.0
31 TraesCS3B01G299200 chr7B 90.909 154 9 2 332 480 678570403 678570250 4.450000e-48 202.0
32 TraesCS3B01G299200 chr7B 100.000 31 0 0 2213 2243 592608884 592608914 1.020000e-04 58.4
33 TraesCS3B01G299200 chr2B 88.360 189 19 1 2447 2635 163712097 163711912 9.490000e-55 224.0
34 TraesCS3B01G299200 chr2B 89.286 168 9 6 318 480 512346184 512346021 4.450000e-48 202.0
35 TraesCS3B01G299200 chr2B 91.935 62 4 1 2377 2437 163712193 163712132 4.670000e-13 86.1
36 TraesCS3B01G299200 chr4B 86.792 212 11 7 243 449 14386707 14386906 1.230000e-53 220.0
37 TraesCS3B01G299200 chr4B 90.683 161 7 6 318 473 358485395 358485552 9.560000e-50 207.0
38 TraesCS3B01G299200 chr4B 94.595 37 1 1 2213 2249 570151255 570151290 3.660000e-04 56.5
39 TraesCS3B01G299200 chr1D 88.710 186 13 4 524 701 390537643 390537828 1.230000e-53 220.0
40 TraesCS3B01G299200 chr2A 94.891 137 4 3 207 341 453796654 453796789 7.390000e-51 211.0
41 TraesCS3B01G299200 chr7A 75.000 148 20 9 2213 2358 706286112 706285980 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G299200 chr3B 479984397 479987031 2634 True 4867.00 4867 100.000 1 2635 1 chr3B.!!$R2 2634
1 TraesCS3B01G299200 chr3D 368950180 368951809 1629 True 1860.00 1860 87.529 702 2358 1 chr3D.!!$R1 1656
2 TraesCS3B01G299200 chr3A 490336701 490338717 2016 True 923.45 1783 91.580 25 2249 2 chr3A.!!$R2 2224

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 566 0.032515 TCTCTGCCGGGGAGATGTTA 60.033 55.0 19.14 2.58 35.25 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 2595 0.040603 ACTCACGACCGAAGAACGAC 60.041 55.0 0.0 0.0 45.77 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 6.610425 AGTCGTATGGAAAATACTACTCCCTT 59.390 38.462 0.00 0.00 28.33 3.95
65 66 6.700520 GTCGTATGGAAAATACTACTCCCTTG 59.299 42.308 0.00 0.00 0.00 3.61
66 67 5.989777 CGTATGGAAAATACTACTCCCTTGG 59.010 44.000 0.00 0.00 0.00 3.61
67 68 6.183360 CGTATGGAAAATACTACTCCCTTGGA 60.183 42.308 0.00 0.00 0.00 3.53
68 69 6.848562 ATGGAAAATACTACTCCCTTGGAT 57.151 37.500 0.00 0.00 0.00 3.41
71 72 4.957684 AAATACTACTCCCTTGGATCGG 57.042 45.455 0.00 0.00 0.00 4.18
75 76 3.385115 ACTACTCCCTTGGATCGGAAAT 58.615 45.455 0.00 0.00 0.00 2.17
76 77 3.780850 ACTACTCCCTTGGATCGGAAATT 59.219 43.478 0.00 0.00 0.00 1.82
77 78 4.966805 ACTACTCCCTTGGATCGGAAATTA 59.033 41.667 0.00 0.00 0.00 1.40
78 79 5.607171 ACTACTCCCTTGGATCGGAAATTAT 59.393 40.000 0.00 0.00 0.00 1.28
79 80 6.785963 ACTACTCCCTTGGATCGGAAATTATA 59.214 38.462 0.00 0.00 0.00 0.98
80 81 6.704056 ACTCCCTTGGATCGGAAATTATAT 57.296 37.500 0.00 0.00 0.00 0.86
81 82 6.712276 ACTCCCTTGGATCGGAAATTATATC 58.288 40.000 0.00 0.00 0.00 1.63
82 83 6.502158 ACTCCCTTGGATCGGAAATTATATCT 59.498 38.462 0.00 0.00 0.00 1.98
83 84 6.947464 TCCCTTGGATCGGAAATTATATCTC 58.053 40.000 0.00 0.00 0.00 2.75
84 85 6.070194 TCCCTTGGATCGGAAATTATATCTCC 60.070 42.308 0.00 0.00 0.00 3.71
85 86 6.296432 CCCTTGGATCGGAAATTATATCTCCA 60.296 42.308 0.00 0.00 0.00 3.86
86 87 7.168219 CCTTGGATCGGAAATTATATCTCCAA 58.832 38.462 9.86 9.86 38.76 3.53
87 88 7.665559 CCTTGGATCGGAAATTATATCTCCAAA 59.334 37.037 10.90 0.00 40.08 3.28
88 89 8.988546 TTGGATCGGAAATTATATCTCCAAAA 57.011 30.769 8.47 0.00 38.29 2.44
89 90 8.988546 TGGATCGGAAATTATATCTCCAAAAA 57.011 30.769 0.00 0.00 0.00 1.94
115 116 9.908152 AAAGAAATGTTTTCCTTACCTTTATCG 57.092 29.630 0.00 0.00 0.00 2.92
116 117 8.857694 AGAAATGTTTTCCTTACCTTTATCGA 57.142 30.769 0.00 0.00 0.00 3.59
117 118 9.292195 AGAAATGTTTTCCTTACCTTTATCGAA 57.708 29.630 0.00 0.00 0.00 3.71
118 119 9.902196 GAAATGTTTTCCTTACCTTTATCGAAA 57.098 29.630 0.00 0.00 0.00 3.46
164 165 9.274206 GTATGAAAAATACTACTCCCTTGGATC 57.726 37.037 0.00 0.00 0.00 3.36
173 174 4.855298 ACTCCCTTGGATCGGAAATAAA 57.145 40.909 0.00 0.00 0.00 1.40
178 179 4.022849 CCCTTGGATCGGAAATAAATGCTC 60.023 45.833 0.00 0.00 0.00 4.26
179 180 4.022849 CCTTGGATCGGAAATAAATGCTCC 60.023 45.833 0.00 0.00 0.00 4.70
213 215 8.974060 TGTTTTCCTTAATCATGACCTATACC 57.026 34.615 0.00 0.00 0.00 2.73
214 216 8.778059 TGTTTTCCTTAATCATGACCTATACCT 58.222 33.333 0.00 0.00 0.00 3.08
215 217 9.057089 GTTTTCCTTAATCATGACCTATACCTG 57.943 37.037 0.00 0.00 0.00 4.00
216 218 6.935240 TCCTTAATCATGACCTATACCTGG 57.065 41.667 0.00 0.00 0.00 4.45
217 219 5.248477 TCCTTAATCATGACCTATACCTGGC 59.752 44.000 0.00 0.00 0.00 4.85
218 220 5.491982 CTTAATCATGACCTATACCTGGCC 58.508 45.833 0.00 0.00 0.00 5.36
219 221 2.487746 TCATGACCTATACCTGGCCA 57.512 50.000 4.71 4.71 0.00 5.36
220 222 2.770447 TCATGACCTATACCTGGCCAA 58.230 47.619 7.01 0.00 0.00 4.52
221 223 3.119319 TCATGACCTATACCTGGCCAAA 58.881 45.455 7.01 0.00 0.00 3.28
222 224 3.118038 TCATGACCTATACCTGGCCAAAC 60.118 47.826 7.01 0.00 0.00 2.93
223 225 1.562475 TGACCTATACCTGGCCAAACC 59.438 52.381 7.01 0.00 39.84 3.27
224 226 1.844497 GACCTATACCTGGCCAAACCT 59.156 52.381 7.01 0.00 40.22 3.50
225 227 1.844497 ACCTATACCTGGCCAAACCTC 59.156 52.381 7.01 0.00 40.22 3.85
226 228 1.202651 CCTATACCTGGCCAAACCTCG 60.203 57.143 7.01 0.00 40.22 4.63
227 229 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
228 230 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
268 270 2.813908 CGTAGCCAAGCCCGACAC 60.814 66.667 0.00 0.00 0.00 3.67
269 271 2.345991 GTAGCCAAGCCCGACACA 59.654 61.111 0.00 0.00 0.00 3.72
270 272 1.302192 GTAGCCAAGCCCGACACAA 60.302 57.895 0.00 0.00 0.00 3.33
271 273 0.887387 GTAGCCAAGCCCGACACAAA 60.887 55.000 0.00 0.00 0.00 2.83
272 274 0.179015 TAGCCAAGCCCGACACAAAA 60.179 50.000 0.00 0.00 0.00 2.44
273 275 1.040339 AGCCAAGCCCGACACAAAAA 61.040 50.000 0.00 0.00 0.00 1.94
316 318 4.082523 CGACCATCGGGCCTGTGT 62.083 66.667 12.43 7.67 36.00 3.72
317 319 2.351276 GACCATCGGGCCTGTGTT 59.649 61.111 12.43 0.00 37.90 3.32
318 320 1.303317 GACCATCGGGCCTGTGTTT 60.303 57.895 12.43 0.00 37.90 2.83
319 321 1.303317 ACCATCGGGCCTGTGTTTC 60.303 57.895 12.43 0.00 37.90 2.78
320 322 1.002134 CCATCGGGCCTGTGTTTCT 60.002 57.895 12.43 0.00 0.00 2.52
321 323 1.308069 CCATCGGGCCTGTGTTTCTG 61.308 60.000 12.43 1.22 0.00 3.02
322 324 1.002134 ATCGGGCCTGTGTTTCTGG 60.002 57.895 12.43 0.00 38.06 3.86
323 325 2.484287 ATCGGGCCTGTGTTTCTGGG 62.484 60.000 12.43 0.00 35.96 4.45
326 328 2.991540 GCCTGTGTTTCTGGGCCC 60.992 66.667 17.59 17.59 38.77 5.80
327 329 2.672996 CCTGTGTTTCTGGGCCCG 60.673 66.667 19.37 12.57 0.00 6.13
328 330 2.429930 CTGTGTTTCTGGGCCCGA 59.570 61.111 19.37 14.97 0.00 5.14
329 331 1.672356 CTGTGTTTCTGGGCCCGAG 60.672 63.158 19.37 15.85 0.00 4.63
330 332 3.056328 GTGTTTCTGGGCCCGAGC 61.056 66.667 19.37 13.75 38.76 5.03
347 349 3.646715 CCCGGCCCAACCTTCAGA 61.647 66.667 0.00 0.00 35.61 3.27
348 350 2.434331 CCGGCCCAACCTTCAGAA 59.566 61.111 0.00 0.00 35.61 3.02
349 351 1.228429 CCGGCCCAACCTTCAGAAA 60.228 57.895 0.00 0.00 35.61 2.52
350 352 0.825840 CCGGCCCAACCTTCAGAAAA 60.826 55.000 0.00 0.00 35.61 2.29
351 353 1.256812 CGGCCCAACCTTCAGAAAAT 58.743 50.000 0.00 0.00 35.61 1.82
352 354 1.067635 CGGCCCAACCTTCAGAAAATG 60.068 52.381 0.00 0.00 35.61 2.32
353 355 1.276138 GGCCCAACCTTCAGAAAATGG 59.724 52.381 0.00 2.74 34.51 3.16
354 356 1.338105 GCCCAACCTTCAGAAAATGGC 60.338 52.381 3.85 0.00 0.00 4.40
355 357 1.969923 CCCAACCTTCAGAAAATGGCA 59.030 47.619 0.00 0.00 0.00 4.92
356 358 2.368221 CCCAACCTTCAGAAAATGGCAA 59.632 45.455 0.00 0.00 0.00 4.52
357 359 3.181456 CCCAACCTTCAGAAAATGGCAAA 60.181 43.478 0.00 0.00 0.00 3.68
358 360 4.450053 CCAACCTTCAGAAAATGGCAAAA 58.550 39.130 0.00 0.00 0.00 2.44
359 361 4.880696 CCAACCTTCAGAAAATGGCAAAAA 59.119 37.500 0.00 0.00 0.00 1.94
360 362 5.220835 CCAACCTTCAGAAAATGGCAAAAAC 60.221 40.000 0.00 0.00 0.00 2.43
361 363 4.119136 ACCTTCAGAAAATGGCAAAAACG 58.881 39.130 0.00 0.00 0.00 3.60
362 364 4.142049 ACCTTCAGAAAATGGCAAAAACGA 60.142 37.500 0.00 0.00 0.00 3.85
363 365 4.209080 CCTTCAGAAAATGGCAAAAACGAC 59.791 41.667 0.00 0.00 0.00 4.34
364 366 3.367607 TCAGAAAATGGCAAAAACGACG 58.632 40.909 0.00 0.00 0.00 5.12
365 367 2.470999 CAGAAAATGGCAAAAACGACGG 59.529 45.455 0.00 0.00 0.00 4.79
366 368 1.790043 GAAAATGGCAAAAACGACGGG 59.210 47.619 0.00 0.00 0.00 5.28
367 369 0.598942 AAATGGCAAAAACGACGGGC 60.599 50.000 0.00 0.00 0.00 6.13
368 370 2.428960 AATGGCAAAAACGACGGGCC 62.429 55.000 0.00 0.00 44.82 5.80
369 371 4.351938 GGCAAAAACGACGGGCCC 62.352 66.667 13.57 13.57 38.70 5.80
370 372 4.693525 GCAAAAACGACGGGCCCG 62.694 66.667 42.17 42.17 46.03 6.13
371 373 4.032987 CAAAAACGACGGGCCCGG 62.033 66.667 44.99 31.45 44.69 5.73
397 399 4.371975 CGACCTTCGGGCTCAAAA 57.628 55.556 0.00 0.00 39.10 2.44
398 400 2.624169 CGACCTTCGGGCTCAAAAA 58.376 52.632 0.00 0.00 39.10 1.94
399 401 0.237498 CGACCTTCGGGCTCAAAAAC 59.763 55.000 0.00 0.00 39.10 2.43
400 402 1.605753 GACCTTCGGGCTCAAAAACT 58.394 50.000 0.00 0.00 39.10 2.66
401 403 2.774687 GACCTTCGGGCTCAAAAACTA 58.225 47.619 0.00 0.00 39.10 2.24
402 404 2.742589 GACCTTCGGGCTCAAAAACTAG 59.257 50.000 0.00 0.00 39.10 2.57
403 405 2.084546 CCTTCGGGCTCAAAAACTAGG 58.915 52.381 0.00 0.00 0.00 3.02
404 406 1.468914 CTTCGGGCTCAAAAACTAGGC 59.531 52.381 0.00 0.00 37.55 3.93
407 409 2.180674 GGCTCAAAAACTAGGCCCG 58.819 57.895 0.00 0.00 37.12 6.13
408 410 0.322187 GGCTCAAAAACTAGGCCCGA 60.322 55.000 0.00 0.00 37.12 5.14
409 411 1.087501 GCTCAAAAACTAGGCCCGAG 58.912 55.000 0.00 0.00 0.00 4.63
410 412 1.087501 CTCAAAAACTAGGCCCGAGC 58.912 55.000 0.00 0.00 38.76 5.03
455 457 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
456 458 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
457 459 2.281970 GGGTCGGGCTTTTTCGGT 60.282 61.111 0.00 0.00 0.00 4.69
458 460 2.330372 GGGTCGGGCTTTTTCGGTC 61.330 63.158 0.00 0.00 0.00 4.79
459 461 2.330372 GGTCGGGCTTTTTCGGTCC 61.330 63.158 0.00 0.00 0.00 4.46
461 463 3.428282 CGGGCTTTTTCGGTCCGG 61.428 66.667 12.29 0.00 46.64 5.14
462 464 3.060000 GGGCTTTTTCGGTCCGGG 61.060 66.667 12.29 0.00 0.00 5.73
463 465 3.744719 GGCTTTTTCGGTCCGGGC 61.745 66.667 12.29 0.00 0.00 6.13
464 466 3.744719 GCTTTTTCGGTCCGGGCC 61.745 66.667 17.58 17.58 0.00 5.80
508 510 2.133553 CATAGTGAGCTCTCGCATTGG 58.866 52.381 16.19 0.00 42.23 3.16
520 522 1.490693 CGCATTGGTAGTGCTAGCCG 61.491 60.000 13.29 0.00 40.37 5.52
533 535 3.967886 TAGCCGAGCAATGCTAGAC 57.032 52.632 16.81 5.15 39.88 2.59
534 536 1.403814 TAGCCGAGCAATGCTAGACT 58.596 50.000 16.81 12.87 39.88 3.24
535 537 0.539051 AGCCGAGCAATGCTAGACTT 59.461 50.000 16.81 0.00 39.88 3.01
536 538 1.757118 AGCCGAGCAATGCTAGACTTA 59.243 47.619 16.81 0.00 39.88 2.24
537 539 1.861575 GCCGAGCAATGCTAGACTTAC 59.138 52.381 16.81 0.00 39.88 2.34
538 540 2.738643 GCCGAGCAATGCTAGACTTACA 60.739 50.000 16.81 0.00 39.88 2.41
539 541 3.119291 CCGAGCAATGCTAGACTTACAG 58.881 50.000 16.81 0.00 39.88 2.74
540 542 3.181486 CCGAGCAATGCTAGACTTACAGA 60.181 47.826 16.81 0.00 39.88 3.41
542 544 4.675408 CGAGCAATGCTAGACTTACAGACA 60.675 45.833 8.12 0.00 39.88 3.41
543 545 5.350504 AGCAATGCTAGACTTACAGACAT 57.649 39.130 5.69 0.00 36.99 3.06
544 546 6.471233 AGCAATGCTAGACTTACAGACATA 57.529 37.500 5.69 0.00 36.99 2.29
545 547 7.060383 AGCAATGCTAGACTTACAGACATAT 57.940 36.000 5.69 0.00 36.99 1.78
547 549 7.015098 AGCAATGCTAGACTTACAGACATATCT 59.985 37.037 5.69 0.00 36.99 1.98
548 550 7.328249 GCAATGCTAGACTTACAGACATATCTC 59.672 40.741 0.00 0.00 30.42 2.75
549 551 8.575589 CAATGCTAGACTTACAGACATATCTCT 58.424 37.037 0.00 0.00 30.42 3.10
550 552 7.503521 TGCTAGACTTACAGACATATCTCTG 57.496 40.000 6.46 6.46 43.06 3.35
552 554 5.782893 AGACTTACAGACATATCTCTGCC 57.217 43.478 7.81 0.00 41.38 4.85
555 557 1.043816 ACAGACATATCTCTGCCGGG 58.956 55.000 2.18 0.00 41.38 5.73
556 558 0.319728 CAGACATATCTCTGCCGGGG 59.680 60.000 2.18 0.00 31.57 5.73
557 559 0.188587 AGACATATCTCTGCCGGGGA 59.811 55.000 2.18 0.00 0.00 4.81
559 561 0.188587 ACATATCTCTGCCGGGGAGA 59.811 55.000 17.83 17.83 42.89 3.71
561 563 1.206610 CATATCTCTGCCGGGGAGATG 59.793 57.143 19.14 10.39 46.23 2.90
562 564 0.188587 TATCTCTGCCGGGGAGATGT 59.811 55.000 19.14 12.54 46.23 3.06
564 566 0.032515 TCTCTGCCGGGGAGATGTTA 60.033 55.000 19.14 2.58 35.25 2.41
565 567 0.105039 CTCTGCCGGGGAGATGTTAC 59.895 60.000 19.14 0.00 33.03 2.50
566 568 1.227263 CTGCCGGGGAGATGTTACG 60.227 63.158 10.44 0.00 0.00 3.18
570 572 2.501492 CGGGGAGATGTTACGGACT 58.499 57.895 0.00 0.00 0.00 3.85
573 575 2.040178 GGGGAGATGTTACGGACTCAT 58.960 52.381 0.00 0.00 0.00 2.90
574 576 2.224066 GGGGAGATGTTACGGACTCATG 60.224 54.545 0.00 0.00 0.00 3.07
575 577 2.431057 GGGAGATGTTACGGACTCATGT 59.569 50.000 0.00 0.00 0.00 3.21
576 578 3.448686 GGAGATGTTACGGACTCATGTG 58.551 50.000 0.00 0.00 0.00 3.21
577 579 3.119101 GGAGATGTTACGGACTCATGTGT 60.119 47.826 0.00 0.00 0.00 3.72
578 580 4.106197 GAGATGTTACGGACTCATGTGTC 58.894 47.826 17.64 17.64 36.31 3.67
579 581 3.509967 AGATGTTACGGACTCATGTGTCA 59.490 43.478 24.84 8.35 38.61 3.58
580 582 3.737032 TGTTACGGACTCATGTGTCAA 57.263 42.857 24.84 11.39 38.61 3.18
581 583 4.061357 TGTTACGGACTCATGTGTCAAA 57.939 40.909 24.84 14.79 38.61 2.69
582 584 4.443621 TGTTACGGACTCATGTGTCAAAA 58.556 39.130 24.84 14.51 38.61 2.44
583 585 5.060506 TGTTACGGACTCATGTGTCAAAAT 58.939 37.500 24.84 12.00 38.61 1.82
584 586 6.224584 TGTTACGGACTCATGTGTCAAAATA 58.775 36.000 24.84 13.11 38.61 1.40
585 587 6.876789 TGTTACGGACTCATGTGTCAAAATAT 59.123 34.615 24.84 9.17 38.61 1.28
586 588 5.801350 ACGGACTCATGTGTCAAAATATG 57.199 39.130 24.84 10.53 38.61 1.78
587 589 4.635765 ACGGACTCATGTGTCAAAATATGG 59.364 41.667 24.84 9.03 38.61 2.74
588 590 4.635765 CGGACTCATGTGTCAAAATATGGT 59.364 41.667 24.84 0.00 38.61 3.55
589 591 5.123820 CGGACTCATGTGTCAAAATATGGTT 59.876 40.000 24.84 0.00 38.61 3.67
590 592 6.324819 GGACTCATGTGTCAAAATATGGTTG 58.675 40.000 24.84 0.00 38.61 3.77
591 593 6.271488 ACTCATGTGTCAAAATATGGTTGG 57.729 37.500 0.00 0.00 0.00 3.77
592 594 6.009589 ACTCATGTGTCAAAATATGGTTGGA 58.990 36.000 0.00 0.00 0.00 3.53
593 595 6.151648 ACTCATGTGTCAAAATATGGTTGGAG 59.848 38.462 0.00 0.00 0.00 3.86
594 596 6.244654 TCATGTGTCAAAATATGGTTGGAGA 58.755 36.000 0.00 0.00 0.00 3.71
597 599 6.303054 TGTGTCAAAATATGGTTGGAGAAGA 58.697 36.000 0.81 0.00 0.00 2.87
598 600 6.947733 TGTGTCAAAATATGGTTGGAGAAGAT 59.052 34.615 0.81 0.00 0.00 2.40
599 601 7.451255 TGTGTCAAAATATGGTTGGAGAAGATT 59.549 33.333 0.81 0.00 0.00 2.40
600 602 8.956426 GTGTCAAAATATGGTTGGAGAAGATTA 58.044 33.333 0.81 0.00 0.00 1.75
601 603 9.177608 TGTCAAAATATGGTTGGAGAAGATTAG 57.822 33.333 0.81 0.00 0.00 1.73
602 604 8.624776 GTCAAAATATGGTTGGAGAAGATTAGG 58.375 37.037 0.81 0.00 0.00 2.69
605 607 2.205342 TGGTTGGAGAAGATTAGGGGG 58.795 52.381 0.00 0.00 0.00 5.40
606 608 2.226039 TGGTTGGAGAAGATTAGGGGGA 60.226 50.000 0.00 0.00 0.00 4.81
607 609 2.850568 GGTTGGAGAAGATTAGGGGGAA 59.149 50.000 0.00 0.00 0.00 3.97
609 611 2.776665 TGGAGAAGATTAGGGGGAAGG 58.223 52.381 0.00 0.00 0.00 3.46
610 612 2.058705 GGAGAAGATTAGGGGGAAGGG 58.941 57.143 0.00 0.00 0.00 3.95
612 614 1.149986 GAAGATTAGGGGGAAGGGGG 58.850 60.000 0.00 0.00 0.00 5.40
613 615 0.999493 AAGATTAGGGGGAAGGGGGC 60.999 60.000 0.00 0.00 0.00 5.80
614 616 2.371104 ATTAGGGGGAAGGGGGCC 60.371 66.667 0.00 0.00 0.00 5.80
615 617 4.791184 TTAGGGGGAAGGGGGCCC 62.791 72.222 15.76 15.76 45.25 5.80
626 628 4.986708 GGGGCCCAGCGGTGAAAA 62.987 66.667 26.86 0.00 0.00 2.29
627 629 2.679996 GGGCCCAGCGGTGAAAAT 60.680 61.111 19.95 0.00 0.00 1.82
628 630 2.710902 GGGCCCAGCGGTGAAAATC 61.711 63.158 19.95 0.70 0.00 2.17
629 631 1.976474 GGCCCAGCGGTGAAAATCA 60.976 57.895 17.83 0.00 0.00 2.57
631 633 1.937546 GCCCAGCGGTGAAAATCAGG 61.938 60.000 17.83 7.83 0.00 3.86
632 634 0.322456 CCCAGCGGTGAAAATCAGGA 60.322 55.000 17.83 0.00 0.00 3.86
633 635 1.089920 CCAGCGGTGAAAATCAGGAG 58.910 55.000 17.83 0.00 0.00 3.69
637 639 0.394352 CGGTGAAAATCAGGAGGGGG 60.394 60.000 0.00 0.00 0.00 5.40
656 658 4.344865 TTGGCGAGCAAGGGGTCC 62.345 66.667 0.00 0.00 38.30 4.46
660 662 2.975536 CGAGCAAGGGGTCCGTAA 59.024 61.111 0.00 0.00 38.30 3.18
662 664 1.601419 CGAGCAAGGGGTCCGTAAGA 61.601 60.000 0.00 0.00 38.30 2.10
671 673 2.283388 TCCGTAAGACCAGCCCGT 60.283 61.111 0.00 0.00 43.02 5.28
672 674 1.001020 TCCGTAAGACCAGCCCGTA 60.001 57.895 0.00 0.00 43.02 4.02
673 675 0.611618 TCCGTAAGACCAGCCCGTAA 60.612 55.000 0.00 0.00 43.02 3.18
674 676 0.459063 CCGTAAGACCAGCCCGTAAC 60.459 60.000 0.00 0.00 43.02 2.50
675 677 0.244450 CGTAAGACCAGCCCGTAACA 59.756 55.000 0.00 0.00 43.02 2.41
677 679 0.248289 TAAGACCAGCCCGTAACAGC 59.752 55.000 0.00 0.00 0.00 4.40
678 680 1.481056 AAGACCAGCCCGTAACAGCT 61.481 55.000 0.00 0.00 40.89 4.24
679 681 1.003718 GACCAGCCCGTAACAGCTT 60.004 57.895 0.00 0.00 37.18 3.74
681 683 0.605589 ACCAGCCCGTAACAGCTTTC 60.606 55.000 0.00 0.00 37.18 2.62
682 684 1.305930 CCAGCCCGTAACAGCTTTCC 61.306 60.000 0.00 0.00 37.18 3.13
683 685 1.375523 AGCCCGTAACAGCTTTCCG 60.376 57.895 0.00 0.00 35.22 4.30
684 686 1.670083 GCCCGTAACAGCTTTCCGT 60.670 57.895 0.00 0.00 0.00 4.69
685 687 1.232621 GCCCGTAACAGCTTTCCGTT 61.233 55.000 0.00 0.00 0.00 4.44
686 688 1.940752 GCCCGTAACAGCTTTCCGTTA 60.941 52.381 0.00 0.00 0.00 3.18
687 689 1.997606 CCCGTAACAGCTTTCCGTTAG 59.002 52.381 0.00 0.00 0.00 2.34
689 691 2.410730 CCGTAACAGCTTTCCGTTAGTG 59.589 50.000 0.00 0.00 0.00 2.74
690 692 3.054878 CGTAACAGCTTTCCGTTAGTGT 58.945 45.455 0.00 0.00 0.00 3.55
691 693 4.229096 CGTAACAGCTTTCCGTTAGTGTA 58.771 43.478 0.00 0.00 0.00 2.90
692 694 4.322804 CGTAACAGCTTTCCGTTAGTGTAG 59.677 45.833 0.00 0.00 0.00 2.74
693 695 2.685100 ACAGCTTTCCGTTAGTGTAGC 58.315 47.619 0.00 0.00 0.00 3.58
694 696 2.036733 ACAGCTTTCCGTTAGTGTAGCA 59.963 45.455 0.00 0.00 0.00 3.49
698 700 4.760204 AGCTTTCCGTTAGTGTAGCATTTT 59.240 37.500 0.00 0.00 0.00 1.82
699 701 5.240844 AGCTTTCCGTTAGTGTAGCATTTTT 59.759 36.000 0.00 0.00 0.00 1.94
736 892 1.221566 CACACGGGCTCATGGATGA 59.778 57.895 0.00 0.00 35.16 2.92
800 956 2.024163 TCACACGGATCGCGATCG 59.976 61.111 35.36 30.96 38.69 3.69
812 969 1.819632 GCGATCGATGGCCAACCTT 60.820 57.895 21.57 0.00 36.63 3.50
814 971 1.160329 CGATCGATGGCCAACCTTCC 61.160 60.000 10.96 0.00 36.90 3.46
826 983 2.434884 CCTTCCAGCGCACATCGT 60.435 61.111 11.47 0.00 41.07 3.73
839 996 1.292223 CATCGTCACCGTCCAACCT 59.708 57.895 0.00 0.00 35.01 3.50
915 1072 0.977627 GGCTTCCCCAAATCCCCAAG 60.978 60.000 0.00 0.00 0.00 3.61
993 1162 0.121197 ACCCCTCCCAAGATCCTCAA 59.879 55.000 0.00 0.00 0.00 3.02
1019 1191 2.507324 GCCGAACTCTCTCGCCAC 60.507 66.667 0.00 0.00 37.51 5.01
1021 1193 2.202492 CGAACTCTCTCGCCACCG 60.202 66.667 0.00 0.00 31.04 4.94
1260 1433 2.821688 GCTGCTCATCCGCAAGCTC 61.822 63.158 0.00 0.00 39.80 4.09
1503 1689 1.508545 CTCCTGCGTCTCATCGTGT 59.491 57.895 0.00 0.00 0.00 4.49
1615 1807 8.608317 GTTTACCTTTCTCTCTGCTTAATCATC 58.392 37.037 0.00 0.00 0.00 2.92
1645 1837 3.834489 TTGTTGATGTTGTTTGGGCAT 57.166 38.095 0.00 0.00 0.00 4.40
1666 1858 3.159213 TGGGAACTGAACAATCTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
1727 1920 4.140536 GGAATCTTCCAATCTCCATCCAC 58.859 47.826 4.05 0.00 46.76 4.02
1745 1938 2.107552 CCACCTAGACCTGGGAAACAAA 59.892 50.000 6.42 0.00 34.98 2.83
1750 1943 1.802337 GACCTGGGAAACAAACCGGC 61.802 60.000 0.00 0.00 0.00 6.13
1785 1978 2.693762 CCGACGGTAGAAGACGCCA 61.694 63.158 5.48 0.00 0.00 5.69
1912 2105 1.742880 GCGACTGCTCCAAGATGCA 60.743 57.895 0.00 0.00 38.39 3.96
2037 2244 6.505048 TCATGATGGATGAATGGTAGAACT 57.495 37.500 0.00 0.00 38.19 3.01
2038 2245 6.528321 TCATGATGGATGAATGGTAGAACTC 58.472 40.000 0.00 0.00 38.19 3.01
2039 2246 4.948847 TGATGGATGAATGGTAGAACTCG 58.051 43.478 0.00 0.00 0.00 4.18
2040 2247 4.649218 TGATGGATGAATGGTAGAACTCGA 59.351 41.667 0.00 0.00 0.00 4.04
2041 2248 4.655762 TGGATGAATGGTAGAACTCGAG 57.344 45.455 11.84 11.84 0.00 4.04
2042 2249 3.181475 TGGATGAATGGTAGAACTCGAGC 60.181 47.826 13.61 0.00 0.00 5.03
2043 2250 2.561733 TGAATGGTAGAACTCGAGCG 57.438 50.000 13.61 0.00 0.00 5.03
2044 2251 2.089201 TGAATGGTAGAACTCGAGCGA 58.911 47.619 13.61 0.00 0.00 4.93
2045 2252 2.688446 TGAATGGTAGAACTCGAGCGAT 59.312 45.455 13.61 0.00 0.00 4.58
2046 2253 3.881089 TGAATGGTAGAACTCGAGCGATA 59.119 43.478 13.61 0.00 0.00 2.92
2047 2254 4.337274 TGAATGGTAGAACTCGAGCGATAA 59.663 41.667 13.61 0.00 0.00 1.75
2048 2255 3.965292 TGGTAGAACTCGAGCGATAAG 57.035 47.619 13.61 0.00 0.00 1.73
2049 2256 3.276857 TGGTAGAACTCGAGCGATAAGT 58.723 45.455 13.61 0.00 0.00 2.24
2050 2257 3.064958 TGGTAGAACTCGAGCGATAAGTG 59.935 47.826 13.61 0.00 0.00 3.16
2051 2258 2.853731 AGAACTCGAGCGATAAGTGG 57.146 50.000 13.61 0.00 0.00 4.00
2052 2259 1.201343 GAACTCGAGCGATAAGTGGC 58.799 55.000 13.61 0.00 0.00 5.01
2053 2260 0.179108 AACTCGAGCGATAAGTGGCC 60.179 55.000 13.61 0.00 0.00 5.36
2054 2261 1.038130 ACTCGAGCGATAAGTGGCCT 61.038 55.000 13.61 0.00 0.00 5.19
2055 2262 0.103208 CTCGAGCGATAAGTGGCCTT 59.897 55.000 3.32 0.00 34.56 4.35
2069 2276 3.566742 AGTGGCCTTTACCAGTTTAAACG 59.433 43.478 12.54 7.76 40.64 3.60
2106 2313 6.786122 TCTAGTTAAGTGTTAAATTGGCCCT 58.214 36.000 0.00 0.00 0.00 5.19
2110 2317 6.605995 AGTTAAGTGTTAAATTGGCCCTATCC 59.394 38.462 0.00 0.00 0.00 2.59
2120 2327 0.750546 GGCCCTATCCGGTTTGGTTC 60.751 60.000 11.38 3.83 39.52 3.62
2158 2365 1.535028 CGTCAGCTTATTTGTGGTGCA 59.465 47.619 0.00 0.00 0.00 4.57
2159 2366 2.413239 CGTCAGCTTATTTGTGGTGCAG 60.413 50.000 0.00 0.00 0.00 4.41
2181 2388 1.817447 GAGCATTTTCAGCAGCTTCCT 59.183 47.619 0.00 0.00 37.48 3.36
2185 2392 1.609208 TTTTCAGCAGCTTCCTCACC 58.391 50.000 0.00 0.00 0.00 4.02
2240 2450 4.529897 TGGAGGGTCATCATTGAATTGAG 58.470 43.478 0.00 0.00 32.48 3.02
2245 2455 7.419057 GGAGGGTCATCATTGAATTGAGTAGTA 60.419 40.741 0.00 0.00 32.48 1.82
2248 2458 9.125026 GGGTCATCATTGAATTGAGTAGTATTT 57.875 33.333 0.00 0.00 32.48 1.40
2307 2517 6.422776 TTTAGCTAAGCTTAACTCATGCAC 57.577 37.500 12.58 0.00 40.44 4.57
2313 2523 4.013267 AGCTTAACTCATGCACAGTTCT 57.987 40.909 14.67 5.50 35.63 3.01
2333 2543 8.200792 CAGTTCTAGATAACCTGATTAGTTGCT 58.799 37.037 0.00 0.00 0.00 3.91
2353 2564 7.546667 AGTTGCTAAAATGGTTAGAAATGCATG 59.453 33.333 0.00 0.00 0.00 4.06
2358 2569 7.656707 AAAATGGTTAGAAATGCATGTGAAC 57.343 32.000 0.00 1.11 0.00 3.18
2359 2570 6.594788 AATGGTTAGAAATGCATGTGAACT 57.405 33.333 0.00 0.00 0.00 3.01
2360 2571 7.701539 AATGGTTAGAAATGCATGTGAACTA 57.298 32.000 0.00 0.00 0.00 2.24
2361 2572 6.741992 TGGTTAGAAATGCATGTGAACTAG 57.258 37.500 0.00 0.00 0.00 2.57
2362 2573 6.472016 TGGTTAGAAATGCATGTGAACTAGA 58.528 36.000 0.00 0.00 0.00 2.43
2363 2574 6.595326 TGGTTAGAAATGCATGTGAACTAGAG 59.405 38.462 0.00 0.00 0.00 2.43
2364 2575 6.595716 GGTTAGAAATGCATGTGAACTAGAGT 59.404 38.462 0.00 0.00 0.00 3.24
2365 2576 7.413438 GGTTAGAAATGCATGTGAACTAGAGTG 60.413 40.741 0.00 0.00 0.00 3.51
2366 2577 5.555017 AGAAATGCATGTGAACTAGAGTGT 58.445 37.500 0.00 0.00 0.00 3.55
2367 2578 6.701340 AGAAATGCATGTGAACTAGAGTGTA 58.299 36.000 0.00 0.00 0.00 2.90
2368 2579 7.161404 AGAAATGCATGTGAACTAGAGTGTAA 58.839 34.615 0.00 0.00 0.00 2.41
2369 2580 6.727824 AATGCATGTGAACTAGAGTGTAAC 57.272 37.500 0.00 0.00 0.00 2.50
2370 2581 5.208463 TGCATGTGAACTAGAGTGTAACA 57.792 39.130 0.00 0.00 41.43 2.41
2371 2582 4.988540 TGCATGTGAACTAGAGTGTAACAC 59.011 41.667 0.00 0.00 41.43 3.32
2372 2583 4.090066 GCATGTGAACTAGAGTGTAACACG 59.910 45.833 0.00 0.00 41.43 4.49
2373 2584 3.635331 TGTGAACTAGAGTGTAACACGC 58.365 45.455 0.00 0.00 41.43 5.34
2374 2585 2.655474 GTGAACTAGAGTGTAACACGCG 59.345 50.000 3.53 3.53 41.43 6.01
2375 2586 1.647702 GAACTAGAGTGTAACACGCGC 59.352 52.381 5.73 0.00 41.43 6.86
2376 2587 0.879765 ACTAGAGTGTAACACGCGCT 59.120 50.000 5.73 5.71 41.46 5.92
2377 2588 1.268899 ACTAGAGTGTAACACGCGCTT 59.731 47.619 5.73 0.00 39.40 4.68
2378 2589 2.288030 ACTAGAGTGTAACACGCGCTTT 60.288 45.455 5.73 1.11 39.40 3.51
2379 2590 0.859232 AGAGTGTAACACGCGCTTTG 59.141 50.000 5.73 4.91 35.22 2.77
2380 2591 0.721483 GAGTGTAACACGCGCTTTGC 60.721 55.000 5.73 3.40 41.43 3.68
2381 2592 1.724581 GTGTAACACGCGCTTTGCC 60.725 57.895 5.73 0.00 37.18 4.52
2382 2593 2.127003 GTAACACGCGCTTTGCCC 60.127 61.111 5.73 0.00 42.08 5.36
2383 2594 3.358707 TAACACGCGCTTTGCCCC 61.359 61.111 5.73 0.00 42.08 5.80
2390 2601 4.084888 CGCTTTGCCCCGTCGTTC 62.085 66.667 0.00 0.00 0.00 3.95
2391 2602 2.668550 GCTTTGCCCCGTCGTTCT 60.669 61.111 0.00 0.00 0.00 3.01
2392 2603 2.258726 GCTTTGCCCCGTCGTTCTT 61.259 57.895 0.00 0.00 0.00 2.52
2393 2604 1.866925 CTTTGCCCCGTCGTTCTTC 59.133 57.895 0.00 0.00 0.00 2.87
2394 2605 1.897398 CTTTGCCCCGTCGTTCTTCG 61.897 60.000 0.00 0.00 41.41 3.79
2395 2606 3.869473 TTGCCCCGTCGTTCTTCGG 62.869 63.158 0.00 0.00 45.42 4.30
2396 2607 4.368543 GCCCCGTCGTTCTTCGGT 62.369 66.667 0.00 0.00 44.51 4.69
2397 2608 2.126189 CCCCGTCGTTCTTCGGTC 60.126 66.667 0.00 0.00 44.51 4.79
2398 2609 2.503375 CCCGTCGTTCTTCGGTCG 60.503 66.667 0.00 0.00 44.51 4.79
2399 2610 2.253452 CCGTCGTTCTTCGGTCGT 59.747 61.111 0.00 0.00 41.58 4.34
2400 2611 2.078914 CCGTCGTTCTTCGGTCGTG 61.079 63.158 0.00 0.00 41.58 4.35
2401 2612 1.082561 CGTCGTTCTTCGGTCGTGA 60.083 57.895 0.00 0.00 40.32 4.35
2402 2613 1.058590 CGTCGTTCTTCGGTCGTGAG 61.059 60.000 0.00 0.00 40.32 3.51
2403 2614 0.040603 GTCGTTCTTCGGTCGTGAGT 60.041 55.000 0.00 0.00 40.32 3.41
2404 2615 0.664761 TCGTTCTTCGGTCGTGAGTT 59.335 50.000 0.00 0.00 40.32 3.01
2405 2616 1.872952 TCGTTCTTCGGTCGTGAGTTA 59.127 47.619 0.00 0.00 40.32 2.24
2406 2617 2.290367 TCGTTCTTCGGTCGTGAGTTAA 59.710 45.455 0.00 0.00 40.32 2.01
2407 2618 2.655474 CGTTCTTCGGTCGTGAGTTAAG 59.345 50.000 0.00 0.00 35.71 1.85
2408 2619 3.636381 GTTCTTCGGTCGTGAGTTAAGT 58.364 45.455 0.00 0.00 0.00 2.24
2409 2620 3.996150 TCTTCGGTCGTGAGTTAAGTT 57.004 42.857 0.00 0.00 0.00 2.66
2410 2621 4.311816 TCTTCGGTCGTGAGTTAAGTTT 57.688 40.909 0.00 0.00 0.00 2.66
2411 2622 4.046462 TCTTCGGTCGTGAGTTAAGTTTG 58.954 43.478 0.00 0.00 0.00 2.93
2412 2623 3.713858 TCGGTCGTGAGTTAAGTTTGA 57.286 42.857 0.00 0.00 0.00 2.69
2413 2624 4.247267 TCGGTCGTGAGTTAAGTTTGAT 57.753 40.909 0.00 0.00 0.00 2.57
2414 2625 5.375417 TCGGTCGTGAGTTAAGTTTGATA 57.625 39.130 0.00 0.00 0.00 2.15
2415 2626 5.957798 TCGGTCGTGAGTTAAGTTTGATAT 58.042 37.500 0.00 0.00 0.00 1.63
2416 2627 5.803461 TCGGTCGTGAGTTAAGTTTGATATG 59.197 40.000 0.00 0.00 0.00 1.78
2417 2628 5.575606 CGGTCGTGAGTTAAGTTTGATATGT 59.424 40.000 0.00 0.00 0.00 2.29
2418 2629 6.090358 CGGTCGTGAGTTAAGTTTGATATGTT 59.910 38.462 0.00 0.00 0.00 2.71
2419 2630 7.359765 CGGTCGTGAGTTAAGTTTGATATGTTT 60.360 37.037 0.00 0.00 0.00 2.83
2420 2631 8.928733 GGTCGTGAGTTAAGTTTGATATGTTTA 58.071 33.333 0.00 0.00 0.00 2.01
2443 2654 9.562583 TTTATTTTGTACTTGATTTATGACGGC 57.437 29.630 0.00 0.00 0.00 5.68
2444 2655 5.554822 TTTGTACTTGATTTATGACGGCC 57.445 39.130 0.00 0.00 0.00 6.13
2445 2656 3.537580 TGTACTTGATTTATGACGGCCC 58.462 45.455 0.00 0.00 0.00 5.80
2446 2657 1.663695 ACTTGATTTATGACGGCCCG 58.336 50.000 0.00 0.00 0.00 6.13
2447 2658 1.065709 ACTTGATTTATGACGGCCCGT 60.066 47.619 9.43 9.43 45.10 5.28
2448 2659 2.014128 CTTGATTTATGACGGCCCGTT 58.986 47.619 11.54 0.00 41.37 4.44
2449 2660 1.374560 TGATTTATGACGGCCCGTTG 58.625 50.000 11.54 0.00 41.37 4.10
2450 2661 1.066071 TGATTTATGACGGCCCGTTGA 60.066 47.619 11.54 0.00 41.37 3.18
2451 2662 2.218603 GATTTATGACGGCCCGTTGAT 58.781 47.619 11.54 8.66 41.37 2.57
2452 2663 2.116827 TTTATGACGGCCCGTTGATT 57.883 45.000 11.54 0.00 41.37 2.57
2453 2664 2.983907 TTATGACGGCCCGTTGATTA 57.016 45.000 11.54 0.00 41.37 1.75
2454 2665 3.478857 TTATGACGGCCCGTTGATTAT 57.521 42.857 11.54 3.30 41.37 1.28
2455 2666 1.878953 ATGACGGCCCGTTGATTATC 58.121 50.000 11.54 0.00 41.37 1.75
2456 2667 0.828022 TGACGGCCCGTTGATTATCT 59.172 50.000 11.54 0.00 41.37 1.98
2457 2668 1.208535 TGACGGCCCGTTGATTATCTT 59.791 47.619 11.54 0.00 41.37 2.40
2458 2669 2.431419 TGACGGCCCGTTGATTATCTTA 59.569 45.455 11.54 0.00 41.37 2.10
2459 2670 2.798847 GACGGCCCGTTGATTATCTTAC 59.201 50.000 11.54 0.00 41.37 2.34
2460 2671 2.168936 ACGGCCCGTTGATTATCTTACA 59.831 45.455 1.02 0.00 36.35 2.41
2461 2672 3.181458 ACGGCCCGTTGATTATCTTACAT 60.181 43.478 1.02 0.00 36.35 2.29
2462 2673 4.039488 ACGGCCCGTTGATTATCTTACATA 59.961 41.667 1.02 0.00 36.35 2.29
2463 2674 5.175859 CGGCCCGTTGATTATCTTACATAT 58.824 41.667 0.00 0.00 0.00 1.78
2464 2675 5.291128 CGGCCCGTTGATTATCTTACATATC 59.709 44.000 0.00 0.00 0.00 1.63
2465 2676 6.170506 GGCCCGTTGATTATCTTACATATCA 58.829 40.000 0.00 0.00 0.00 2.15
2466 2677 6.823689 GGCCCGTTGATTATCTTACATATCAT 59.176 38.462 0.00 0.00 0.00 2.45
2467 2678 7.336931 GGCCCGTTGATTATCTTACATATCATT 59.663 37.037 0.00 0.00 0.00 2.57
2468 2679 8.177663 GCCCGTTGATTATCTTACATATCATTG 58.822 37.037 0.00 0.00 0.00 2.82
2469 2680 9.219603 CCCGTTGATTATCTTACATATCATTGT 57.780 33.333 0.00 0.00 0.00 2.71
2503 2714 9.536510 AGGTTAAATTGTTAGCCTAATGGTTAA 57.463 29.630 0.53 0.00 46.05 2.01
2508 2719 8.716646 AATTGTTAGCCTAATGGTTAATTTGC 57.283 30.769 0.00 0.00 40.32 3.68
2509 2720 6.842437 TGTTAGCCTAATGGTTAATTTGCA 57.158 33.333 0.00 0.00 40.32 4.08
2510 2721 6.626302 TGTTAGCCTAATGGTTAATTTGCAC 58.374 36.000 0.00 0.00 40.32 4.57
2511 2722 6.209589 TGTTAGCCTAATGGTTAATTTGCACA 59.790 34.615 0.00 0.00 40.32 4.57
2512 2723 5.937975 AGCCTAATGGTTAATTTGCACAT 57.062 34.783 0.00 0.00 35.27 3.21
2513 2724 5.663456 AGCCTAATGGTTAATTTGCACATG 58.337 37.500 0.00 0.00 35.27 3.21
2514 2725 5.187576 AGCCTAATGGTTAATTTGCACATGT 59.812 36.000 0.00 0.00 35.27 3.21
2515 2726 5.874261 GCCTAATGGTTAATTTGCACATGTT 59.126 36.000 0.00 0.00 35.27 2.71
2516 2727 7.038659 GCCTAATGGTTAATTTGCACATGTTA 58.961 34.615 0.00 0.00 35.27 2.41
2517 2728 7.010091 GCCTAATGGTTAATTTGCACATGTTAC 59.990 37.037 0.00 0.00 35.27 2.50
2518 2729 8.031864 CCTAATGGTTAATTTGCACATGTTACA 58.968 33.333 0.00 0.00 0.00 2.41
2519 2730 9.416794 CTAATGGTTAATTTGCACATGTTACAA 57.583 29.630 0.00 0.62 0.00 2.41
2520 2731 7.650834 ATGGTTAATTTGCACATGTTACAAC 57.349 32.000 9.96 1.03 0.00 3.32
2521 2732 5.687730 TGGTTAATTTGCACATGTTACAACG 59.312 36.000 9.96 0.00 0.00 4.10
2522 2733 5.117897 GGTTAATTTGCACATGTTACAACGG 59.882 40.000 9.96 0.00 0.00 4.44
2523 2734 4.576216 AATTTGCACATGTTACAACGGA 57.424 36.364 9.96 0.00 0.00 4.69
2524 2735 4.782019 ATTTGCACATGTTACAACGGAT 57.218 36.364 9.96 0.82 0.00 4.18
2525 2736 4.576216 TTTGCACATGTTACAACGGATT 57.424 36.364 9.96 0.00 0.00 3.01
2526 2737 3.550950 TGCACATGTTACAACGGATTG 57.449 42.857 0.00 0.00 41.98 2.67
2527 2738 3.142174 TGCACATGTTACAACGGATTGA 58.858 40.909 0.00 0.00 39.30 2.57
2528 2739 3.565902 TGCACATGTTACAACGGATTGAA 59.434 39.130 0.00 0.00 39.30 2.69
2529 2740 4.036852 TGCACATGTTACAACGGATTGAAA 59.963 37.500 0.00 0.00 39.30 2.69
2530 2741 5.160641 GCACATGTTACAACGGATTGAAAT 58.839 37.500 0.00 0.00 39.30 2.17
2531 2742 5.060816 GCACATGTTACAACGGATTGAAATG 59.939 40.000 0.00 0.00 39.30 2.32
2532 2743 5.060816 CACATGTTACAACGGATTGAAATGC 59.939 40.000 0.00 0.00 39.30 3.56
2533 2744 4.837896 TGTTACAACGGATTGAAATGCA 57.162 36.364 0.00 0.00 39.30 3.96
2534 2745 5.384063 TGTTACAACGGATTGAAATGCAT 57.616 34.783 0.00 0.00 39.30 3.96
2535 2746 5.777802 TGTTACAACGGATTGAAATGCATT 58.222 33.333 5.99 5.99 39.30 3.56
2536 2747 5.632764 TGTTACAACGGATTGAAATGCATTG 59.367 36.000 13.82 0.59 39.30 2.82
2537 2748 4.517952 ACAACGGATTGAAATGCATTGA 57.482 36.364 13.82 2.70 39.30 2.57
2538 2749 4.236935 ACAACGGATTGAAATGCATTGAC 58.763 39.130 13.82 10.98 39.30 3.18
2539 2750 3.135414 ACGGATTGAAATGCATTGACG 57.865 42.857 13.82 13.13 0.00 4.35
2540 2751 2.746904 ACGGATTGAAATGCATTGACGA 59.253 40.909 13.82 10.60 0.00 4.20
2541 2752 3.190327 ACGGATTGAAATGCATTGACGAA 59.810 39.130 13.82 4.06 0.00 3.85
2542 2753 4.142403 ACGGATTGAAATGCATTGACGAAT 60.142 37.500 13.82 8.69 0.00 3.34
2543 2754 4.438797 CGGATTGAAATGCATTGACGAATC 59.561 41.667 13.82 15.91 0.00 2.52
2544 2755 5.342433 GGATTGAAATGCATTGACGAATCA 58.658 37.500 13.82 8.90 0.00 2.57
2556 2767 4.535526 TGACGAATCAAGTTGGATGAGA 57.464 40.909 2.34 0.00 0.00 3.27
2557 2768 5.089970 TGACGAATCAAGTTGGATGAGAT 57.910 39.130 2.34 0.00 0.00 2.75
2558 2769 6.220726 TGACGAATCAAGTTGGATGAGATA 57.779 37.500 2.34 0.00 0.00 1.98
2559 2770 6.820335 TGACGAATCAAGTTGGATGAGATAT 58.180 36.000 2.34 0.00 0.00 1.63
2560 2771 6.925718 TGACGAATCAAGTTGGATGAGATATC 59.074 38.462 2.34 0.00 0.00 1.63
2561 2772 7.060383 ACGAATCAAGTTGGATGAGATATCT 57.940 36.000 4.47 4.47 0.00 1.98
2562 2773 6.927936 ACGAATCAAGTTGGATGAGATATCTG 59.072 38.462 10.74 0.00 0.00 2.90
2563 2774 6.128607 CGAATCAAGTTGGATGAGATATCTGC 60.129 42.308 10.74 2.71 0.00 4.26
2564 2775 4.965814 TCAAGTTGGATGAGATATCTGCC 58.034 43.478 10.74 9.23 0.00 4.85
2565 2776 4.409901 TCAAGTTGGATGAGATATCTGCCA 59.590 41.667 10.74 11.73 0.00 4.92
2566 2777 5.072736 TCAAGTTGGATGAGATATCTGCCAT 59.927 40.000 10.74 8.30 0.00 4.40
2567 2778 5.163281 AGTTGGATGAGATATCTGCCATC 57.837 43.478 19.32 19.32 35.81 3.51
2568 2779 3.881937 TGGATGAGATATCTGCCATCG 57.118 47.619 20.15 0.00 37.02 3.84
2569 2780 2.498885 TGGATGAGATATCTGCCATCGG 59.501 50.000 20.15 0.00 37.02 4.18
2570 2781 2.499289 GGATGAGATATCTGCCATCGGT 59.501 50.000 20.15 0.00 37.02 4.69
2571 2782 3.430098 GGATGAGATATCTGCCATCGGTC 60.430 52.174 20.15 9.34 37.02 4.79
2572 2783 2.881734 TGAGATATCTGCCATCGGTCT 58.118 47.619 10.74 0.00 0.00 3.85
2573 2784 2.822561 TGAGATATCTGCCATCGGTCTC 59.177 50.000 10.74 0.00 33.15 3.36
2574 2785 3.088532 GAGATATCTGCCATCGGTCTCT 58.911 50.000 10.74 0.00 0.00 3.10
2575 2786 3.505386 AGATATCTGCCATCGGTCTCTT 58.495 45.455 3.89 0.00 0.00 2.85
2576 2787 3.257873 AGATATCTGCCATCGGTCTCTTG 59.742 47.826 3.89 0.00 0.00 3.02
2577 2788 0.179062 ATCTGCCATCGGTCTCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
2578 2789 1.078918 CTGCCATCGGTCTCTTGCA 60.079 57.895 0.00 0.00 0.00 4.08
2579 2790 1.078918 TGCCATCGGTCTCTTGCAG 60.079 57.895 0.00 0.00 0.00 4.41
2580 2791 1.219124 GCCATCGGTCTCTTGCAGA 59.781 57.895 0.00 0.00 0.00 4.26
2593 2804 6.545504 TCTCTTGCAGACAATGTAAAAGTC 57.454 37.500 0.00 0.00 32.74 3.01
2594 2805 6.054941 TCTCTTGCAGACAATGTAAAAGTCA 58.945 36.000 0.00 0.00 32.74 3.41
2595 2806 6.712095 TCTCTTGCAGACAATGTAAAAGTCAT 59.288 34.615 0.00 0.00 32.74 3.06
2596 2807 7.877612 TCTCTTGCAGACAATGTAAAAGTCATA 59.122 33.333 0.00 0.00 32.74 2.15
2597 2808 8.032952 TCTTGCAGACAATGTAAAAGTCATAG 57.967 34.615 0.00 0.00 32.74 2.23
2598 2809 6.182039 TGCAGACAATGTAAAAGTCATAGC 57.818 37.500 0.00 0.00 34.80 2.97
2599 2810 5.123820 TGCAGACAATGTAAAAGTCATAGCC 59.876 40.000 0.00 0.00 34.80 3.93
2600 2811 5.355350 GCAGACAATGTAAAAGTCATAGCCT 59.645 40.000 0.00 0.00 34.80 4.58
2601 2812 6.127897 GCAGACAATGTAAAAGTCATAGCCTT 60.128 38.462 0.00 0.00 34.80 4.35
2602 2813 7.467623 CAGACAATGTAAAAGTCATAGCCTTC 58.532 38.462 0.00 0.00 34.80 3.46
2603 2814 7.119699 CAGACAATGTAAAAGTCATAGCCTTCA 59.880 37.037 0.00 0.00 34.80 3.02
2604 2815 7.665559 AGACAATGTAAAAGTCATAGCCTTCAA 59.334 33.333 0.00 0.00 34.80 2.69
2605 2816 7.593825 ACAATGTAAAAGTCATAGCCTTCAAC 58.406 34.615 0.00 0.00 0.00 3.18
2606 2817 7.448469 ACAATGTAAAAGTCATAGCCTTCAACT 59.552 33.333 0.00 0.00 0.00 3.16
2607 2818 8.299570 CAATGTAAAAGTCATAGCCTTCAACTT 58.700 33.333 0.00 0.00 0.00 2.66
2608 2819 7.817418 TGTAAAAGTCATAGCCTTCAACTTT 57.183 32.000 0.00 0.00 40.79 2.66
2609 2820 8.232913 TGTAAAAGTCATAGCCTTCAACTTTT 57.767 30.769 13.90 13.90 46.33 2.27
2610 2821 8.134895 TGTAAAAGTCATAGCCTTCAACTTTTG 58.865 33.333 17.27 0.00 45.06 2.44
2611 2822 5.712152 AAGTCATAGCCTTCAACTTTTGG 57.288 39.130 0.00 0.00 0.00 3.28
2612 2823 4.729868 AGTCATAGCCTTCAACTTTTGGT 58.270 39.130 0.00 0.00 0.00 3.67
2613 2824 5.876357 AGTCATAGCCTTCAACTTTTGGTA 58.124 37.500 0.00 0.00 0.00 3.25
2614 2825 6.485171 AGTCATAGCCTTCAACTTTTGGTAT 58.515 36.000 0.00 0.00 0.00 2.73
2615 2826 7.630082 AGTCATAGCCTTCAACTTTTGGTATA 58.370 34.615 0.00 0.00 0.00 1.47
2616 2827 8.275040 AGTCATAGCCTTCAACTTTTGGTATAT 58.725 33.333 0.00 0.00 0.00 0.86
2617 2828 9.555727 GTCATAGCCTTCAACTTTTGGTATATA 57.444 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.807907 CCATACGACTAATTTCAGCTTGTTTTT 59.192 33.333 0.00 0.00 0.00 1.94
23 24 7.174253 TCCATACGACTAATTTCAGCTTGTTTT 59.826 33.333 0.00 0.00 0.00 2.43
30 31 8.827677 AGTATTTTCCATACGACTAATTTCAGC 58.172 33.333 0.00 0.00 0.00 4.26
64 65 8.988546 TTTTTGGAGATATAATTTCCGATCCA 57.011 30.769 0.00 0.00 33.60 3.41
89 90 9.908152 CGATAAAGGTAAGGAAAACATTTCTTT 57.092 29.630 5.67 5.67 33.38 2.52
90 91 9.292195 TCGATAAAGGTAAGGAAAACATTTCTT 57.708 29.630 3.16 0.00 33.38 2.52
91 92 8.857694 TCGATAAAGGTAAGGAAAACATTTCT 57.142 30.769 3.16 0.00 33.38 2.52
92 93 9.902196 TTTCGATAAAGGTAAGGAAAACATTTC 57.098 29.630 0.00 0.00 33.38 2.17
131 132 9.978044 GGGAGTAGTATTTTTCATACGACTAAT 57.022 33.333 7.49 0.00 39.43 1.73
132 133 9.193806 AGGGAGTAGTATTTTTCATACGACTAA 57.806 33.333 7.49 0.00 39.43 2.24
133 134 8.757982 AGGGAGTAGTATTTTTCATACGACTA 57.242 34.615 7.49 0.00 39.43 2.59
134 135 7.657023 AGGGAGTAGTATTTTTCATACGACT 57.343 36.000 7.29 7.29 41.11 4.18
135 136 7.224167 CCAAGGGAGTAGTATTTTTCATACGAC 59.776 40.741 0.00 0.00 32.62 4.34
136 137 7.124599 TCCAAGGGAGTAGTATTTTTCATACGA 59.875 37.037 0.00 0.00 0.00 3.43
137 138 7.270047 TCCAAGGGAGTAGTATTTTTCATACG 58.730 38.462 0.00 0.00 0.00 3.06
138 139 9.274206 GATCCAAGGGAGTAGTATTTTTCATAC 57.726 37.037 0.00 0.00 34.05 2.39
139 140 8.148351 CGATCCAAGGGAGTAGTATTTTTCATA 58.852 37.037 0.00 0.00 34.05 2.15
140 141 6.992715 CGATCCAAGGGAGTAGTATTTTTCAT 59.007 38.462 0.00 0.00 34.05 2.57
141 142 6.346096 CGATCCAAGGGAGTAGTATTTTTCA 58.654 40.000 0.00 0.00 34.05 2.69
142 143 5.758784 CCGATCCAAGGGAGTAGTATTTTTC 59.241 44.000 0.00 0.00 34.05 2.29
188 190 8.778059 AGGTATAGGTCATGATTAAGGAAAACA 58.222 33.333 0.00 0.00 0.00 2.83
200 202 2.487746 TGGCCAGGTATAGGTCATGA 57.512 50.000 0.00 0.00 35.45 3.07
204 206 1.844497 AGGTTTGGCCAGGTATAGGTC 59.156 52.381 5.11 0.00 40.61 3.85
205 207 1.844497 GAGGTTTGGCCAGGTATAGGT 59.156 52.381 5.11 0.00 40.61 3.08
208 210 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
209 211 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
210 212 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
211 213 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
250 252 4.752879 TGTCGGGCTTGGCTACGC 62.753 66.667 0.00 0.00 0.00 4.42
251 253 2.813908 GTGTCGGGCTTGGCTACG 60.814 66.667 0.00 0.00 0.00 3.51
252 254 0.887387 TTTGTGTCGGGCTTGGCTAC 60.887 55.000 0.00 0.00 0.00 3.58
253 255 0.179015 TTTTGTGTCGGGCTTGGCTA 60.179 50.000 0.00 0.00 0.00 3.93
254 256 1.040339 TTTTTGTGTCGGGCTTGGCT 61.040 50.000 0.00 0.00 0.00 4.75
255 257 1.439644 TTTTTGTGTCGGGCTTGGC 59.560 52.632 0.00 0.00 0.00 4.52
270 272 2.600470 GGCCGGGCCTGAGTTTTT 60.600 61.111 30.86 0.00 46.69 1.94
299 301 3.605749 AACACAGGCCCGATGGTCG 62.606 63.158 0.00 0.00 42.85 4.79
300 302 1.303317 AAACACAGGCCCGATGGTC 60.303 57.895 0.00 0.00 36.05 4.02
301 303 1.303317 GAAACACAGGCCCGATGGT 60.303 57.895 0.00 0.00 0.00 3.55
302 304 1.002134 AGAAACACAGGCCCGATGG 60.002 57.895 0.00 0.00 0.00 3.51
303 305 1.308069 CCAGAAACACAGGCCCGATG 61.308 60.000 0.00 0.00 0.00 3.84
304 306 1.002134 CCAGAAACACAGGCCCGAT 60.002 57.895 0.00 0.00 0.00 4.18
305 307 2.429930 CCAGAAACACAGGCCCGA 59.570 61.111 0.00 0.00 0.00 5.14
306 308 2.672996 CCCAGAAACACAGGCCCG 60.673 66.667 0.00 0.00 0.00 6.13
307 309 2.991540 GCCCAGAAACACAGGCCC 60.992 66.667 0.00 0.00 39.60 5.80
309 311 2.991540 GGGCCCAGAAACACAGGC 60.992 66.667 19.95 0.00 44.99 4.85
310 312 2.672996 CGGGCCCAGAAACACAGG 60.673 66.667 24.92 0.00 0.00 4.00
311 313 1.672356 CTCGGGCCCAGAAACACAG 60.672 63.158 24.92 1.11 0.00 3.66
312 314 2.429930 CTCGGGCCCAGAAACACA 59.570 61.111 24.92 0.00 0.00 3.72
313 315 3.056328 GCTCGGGCCCAGAAACAC 61.056 66.667 24.92 6.27 0.00 3.32
330 332 2.706952 TTTCTGAAGGTTGGGCCGGG 62.707 60.000 2.18 0.00 43.70 5.73
331 333 0.825840 TTTTCTGAAGGTTGGGCCGG 60.826 55.000 0.00 0.00 43.70 6.13
332 334 1.067635 CATTTTCTGAAGGTTGGGCCG 60.068 52.381 0.00 0.00 43.70 6.13
333 335 1.276138 CCATTTTCTGAAGGTTGGGCC 59.724 52.381 0.00 0.00 37.58 5.80
334 336 1.338105 GCCATTTTCTGAAGGTTGGGC 60.338 52.381 13.67 9.72 0.00 5.36
335 337 1.969923 TGCCATTTTCTGAAGGTTGGG 59.030 47.619 13.67 5.04 0.00 4.12
336 338 3.749665 TTGCCATTTTCTGAAGGTTGG 57.250 42.857 9.63 9.63 0.00 3.77
337 339 5.502220 CGTTTTTGCCATTTTCTGAAGGTTG 60.502 40.000 0.00 0.00 0.00 3.77
338 340 4.570369 CGTTTTTGCCATTTTCTGAAGGTT 59.430 37.500 0.00 0.00 0.00 3.50
339 341 4.119136 CGTTTTTGCCATTTTCTGAAGGT 58.881 39.130 0.00 0.00 0.00 3.50
340 342 4.209080 GTCGTTTTTGCCATTTTCTGAAGG 59.791 41.667 0.00 0.00 0.00 3.46
341 343 4.085619 CGTCGTTTTTGCCATTTTCTGAAG 60.086 41.667 0.00 0.00 0.00 3.02
342 344 3.794028 CGTCGTTTTTGCCATTTTCTGAA 59.206 39.130 0.00 0.00 0.00 3.02
343 345 3.367607 CGTCGTTTTTGCCATTTTCTGA 58.632 40.909 0.00 0.00 0.00 3.27
344 346 2.470999 CCGTCGTTTTTGCCATTTTCTG 59.529 45.455 0.00 0.00 0.00 3.02
345 347 2.544903 CCCGTCGTTTTTGCCATTTTCT 60.545 45.455 0.00 0.00 0.00 2.52
346 348 1.790043 CCCGTCGTTTTTGCCATTTTC 59.210 47.619 0.00 0.00 0.00 2.29
347 349 1.859383 CCCGTCGTTTTTGCCATTTT 58.141 45.000 0.00 0.00 0.00 1.82
348 350 0.598942 GCCCGTCGTTTTTGCCATTT 60.599 50.000 0.00 0.00 0.00 2.32
349 351 1.006688 GCCCGTCGTTTTTGCCATT 60.007 52.632 0.00 0.00 0.00 3.16
350 352 2.648454 GCCCGTCGTTTTTGCCAT 59.352 55.556 0.00 0.00 0.00 4.40
351 353 3.597728 GGCCCGTCGTTTTTGCCA 61.598 61.111 0.00 0.00 41.76 4.92
352 354 4.351938 GGGCCCGTCGTTTTTGCC 62.352 66.667 5.69 0.00 41.42 4.52
353 355 4.693525 CGGGCCCGTCGTTTTTGC 62.694 66.667 36.64 0.00 34.35 3.68
354 356 4.032987 CCGGGCCCGTCGTTTTTG 62.033 66.667 40.52 20.46 37.81 2.44
384 386 1.468914 GCCTAGTTTTTGAGCCCGAAG 59.531 52.381 0.00 0.00 0.00 3.79
385 387 1.530323 GCCTAGTTTTTGAGCCCGAA 58.470 50.000 0.00 0.00 0.00 4.30
386 388 0.322187 GGCCTAGTTTTTGAGCCCGA 60.322 55.000 0.00 0.00 37.66 5.14
387 389 2.180674 GGCCTAGTTTTTGAGCCCG 58.819 57.895 0.00 0.00 37.66 6.13
389 391 0.322187 TCGGGCCTAGTTTTTGAGCC 60.322 55.000 0.84 0.00 43.09 4.70
390 392 1.087501 CTCGGGCCTAGTTTTTGAGC 58.912 55.000 0.84 0.00 0.00 4.26
391 393 1.087501 GCTCGGGCCTAGTTTTTGAG 58.912 55.000 0.84 1.81 0.00 3.02
392 394 3.243128 GCTCGGGCCTAGTTTTTGA 57.757 52.632 0.84 0.00 0.00 2.69
439 441 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
440 442 2.281970 ACCGAAAAAGCCCGACCC 60.282 61.111 0.00 0.00 0.00 4.46
441 443 2.330372 GGACCGAAAAAGCCCGACC 61.330 63.158 0.00 0.00 0.00 4.79
442 444 2.674084 CGGACCGAAAAAGCCCGAC 61.674 63.158 8.64 0.00 42.49 4.79
443 445 2.357760 CGGACCGAAAAAGCCCGA 60.358 61.111 8.64 0.00 42.49 5.14
444 446 3.428282 CCGGACCGAAAAAGCCCG 61.428 66.667 17.49 0.00 39.85 6.13
445 447 3.060000 CCCGGACCGAAAAAGCCC 61.060 66.667 17.49 0.00 0.00 5.19
446 448 3.744719 GCCCGGACCGAAAAAGCC 61.745 66.667 17.49 0.00 0.00 4.35
447 449 3.744719 GGCCCGGACCGAAAAAGC 61.745 66.667 17.49 9.68 0.00 3.51
476 478 3.480133 ACTATGTCCGGCCCAGCC 61.480 66.667 0.00 0.00 46.75 4.85
477 479 2.203070 CACTATGTCCGGCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
478 480 1.443407 CTCACTATGTCCGGCCCAG 59.557 63.158 0.00 0.00 0.00 4.45
479 481 2.731571 GCTCACTATGTCCGGCCCA 61.732 63.158 0.00 0.00 0.00 5.36
480 482 2.109181 GCTCACTATGTCCGGCCC 59.891 66.667 0.00 0.00 0.00 5.80
481 483 1.068250 GAGCTCACTATGTCCGGCC 59.932 63.158 9.40 0.00 0.00 6.13
482 484 0.031449 GAGAGCTCACTATGTCCGGC 59.969 60.000 17.77 0.00 0.00 6.13
483 485 0.309302 CGAGAGCTCACTATGTCCGG 59.691 60.000 17.77 0.00 0.00 5.14
484 486 3.835686 CGAGAGCTCACTATGTCCG 57.164 57.895 17.77 2.34 0.00 4.79
520 522 4.748892 TGTCTGTAAGTCTAGCATTGCTC 58.251 43.478 15.81 0.57 36.03 4.26
525 527 7.309133 GCAGAGATATGTCTGTAAGTCTAGCAT 60.309 40.741 25.80 0.00 45.07 3.79
530 532 4.277174 CGGCAGAGATATGTCTGTAAGTCT 59.723 45.833 25.80 0.00 45.07 3.24
531 533 4.541779 CGGCAGAGATATGTCTGTAAGTC 58.458 47.826 25.80 12.20 45.07 3.01
532 534 3.319405 CCGGCAGAGATATGTCTGTAAGT 59.681 47.826 25.80 0.00 45.07 2.24
533 535 3.305676 CCCGGCAGAGATATGTCTGTAAG 60.306 52.174 25.80 18.01 45.07 2.34
534 536 2.628178 CCCGGCAGAGATATGTCTGTAA 59.372 50.000 25.80 0.00 45.07 2.41
535 537 2.239400 CCCGGCAGAGATATGTCTGTA 58.761 52.381 25.80 0.00 45.07 2.74
536 538 1.043816 CCCGGCAGAGATATGTCTGT 58.956 55.000 25.80 0.00 45.07 3.41
537 539 0.319728 CCCCGGCAGAGATATGTCTG 59.680 60.000 22.38 22.38 45.91 3.51
538 540 0.188587 TCCCCGGCAGAGATATGTCT 59.811 55.000 0.00 0.00 37.42 3.41
539 541 0.605589 CTCCCCGGCAGAGATATGTC 59.394 60.000 13.10 0.00 32.86 3.06
540 542 0.188587 TCTCCCCGGCAGAGATATGT 59.811 55.000 16.18 0.00 35.46 2.29
542 544 1.203237 ACATCTCCCCGGCAGAGATAT 60.203 52.381 26.09 17.61 46.88 1.63
543 545 0.188587 ACATCTCCCCGGCAGAGATA 59.811 55.000 26.09 8.66 46.88 1.98
545 547 0.032515 TAACATCTCCCCGGCAGAGA 60.033 55.000 20.79 20.79 44.20 3.10
547 549 1.672854 CGTAACATCTCCCCGGCAGA 61.673 60.000 0.00 0.00 0.00 4.26
548 550 1.227263 CGTAACATCTCCCCGGCAG 60.227 63.158 0.00 0.00 0.00 4.85
549 551 2.727392 CCGTAACATCTCCCCGGCA 61.727 63.158 0.00 0.00 0.00 5.69
550 552 2.108362 CCGTAACATCTCCCCGGC 59.892 66.667 0.00 0.00 0.00 6.13
552 554 0.384669 GAGTCCGTAACATCTCCCCG 59.615 60.000 0.00 0.00 0.00 5.73
555 557 3.119101 ACACATGAGTCCGTAACATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
556 558 4.106197 GACACATGAGTCCGTAACATCTC 58.894 47.826 11.80 0.00 32.36 2.75
557 559 3.509967 TGACACATGAGTCCGTAACATCT 59.490 43.478 18.89 0.00 37.73 2.90
559 561 3.953712 TGACACATGAGTCCGTAACAT 57.046 42.857 18.89 0.00 37.73 2.71
560 562 3.737032 TTGACACATGAGTCCGTAACA 57.263 42.857 18.89 0.00 37.73 2.41
561 563 5.607119 ATTTTGACACATGAGTCCGTAAC 57.393 39.130 18.89 0.00 37.73 2.50
562 564 6.315144 CCATATTTTGACACATGAGTCCGTAA 59.685 38.462 18.89 11.18 37.73 3.18
564 566 4.635765 CCATATTTTGACACATGAGTCCGT 59.364 41.667 18.89 6.47 37.73 4.69
565 567 4.635765 ACCATATTTTGACACATGAGTCCG 59.364 41.667 18.89 1.40 37.73 4.79
566 568 6.324819 CAACCATATTTTGACACATGAGTCC 58.675 40.000 18.89 3.81 37.73 3.85
568 570 6.009589 TCCAACCATATTTTGACACATGAGT 58.990 36.000 0.00 0.00 0.00 3.41
570 572 6.244654 TCTCCAACCATATTTTGACACATGA 58.755 36.000 0.00 0.00 0.00 3.07
573 575 6.303054 TCTTCTCCAACCATATTTTGACACA 58.697 36.000 0.00 0.00 0.00 3.72
574 576 6.817765 TCTTCTCCAACCATATTTTGACAC 57.182 37.500 0.00 0.00 0.00 3.67
575 577 9.177608 CTAATCTTCTCCAACCATATTTTGACA 57.822 33.333 0.00 0.00 0.00 3.58
576 578 8.624776 CCTAATCTTCTCCAACCATATTTTGAC 58.375 37.037 0.00 0.00 0.00 3.18
577 579 7.779798 CCCTAATCTTCTCCAACCATATTTTGA 59.220 37.037 0.00 0.00 0.00 2.69
578 580 7.014615 CCCCTAATCTTCTCCAACCATATTTTG 59.985 40.741 0.00 0.00 0.00 2.44
579 581 7.069344 CCCCTAATCTTCTCCAACCATATTTT 58.931 38.462 0.00 0.00 0.00 1.82
580 582 6.412024 CCCCCTAATCTTCTCCAACCATATTT 60.412 42.308 0.00 0.00 0.00 1.40
581 583 5.075067 CCCCCTAATCTTCTCCAACCATATT 59.925 44.000 0.00 0.00 0.00 1.28
582 584 4.603610 CCCCCTAATCTTCTCCAACCATAT 59.396 45.833 0.00 0.00 0.00 1.78
583 585 3.980698 CCCCCTAATCTTCTCCAACCATA 59.019 47.826 0.00 0.00 0.00 2.74
584 586 2.785857 CCCCCTAATCTTCTCCAACCAT 59.214 50.000 0.00 0.00 0.00 3.55
585 587 2.205342 CCCCCTAATCTTCTCCAACCA 58.795 52.381 0.00 0.00 0.00 3.67
586 588 2.488836 TCCCCCTAATCTTCTCCAACC 58.511 52.381 0.00 0.00 0.00 3.77
587 589 3.117851 CCTTCCCCCTAATCTTCTCCAAC 60.118 52.174 0.00 0.00 0.00 3.77
588 590 3.123273 CCTTCCCCCTAATCTTCTCCAA 58.877 50.000 0.00 0.00 0.00 3.53
589 591 2.632360 CCCTTCCCCCTAATCTTCTCCA 60.632 54.545 0.00 0.00 0.00 3.86
590 592 2.058705 CCCTTCCCCCTAATCTTCTCC 58.941 57.143 0.00 0.00 0.00 3.71
591 593 2.058705 CCCCTTCCCCCTAATCTTCTC 58.941 57.143 0.00 0.00 0.00 2.87
592 594 1.346570 CCCCCTTCCCCCTAATCTTCT 60.347 57.143 0.00 0.00 0.00 2.85
593 595 1.149986 CCCCCTTCCCCCTAATCTTC 58.850 60.000 0.00 0.00 0.00 2.87
594 596 0.999493 GCCCCCTTCCCCCTAATCTT 60.999 60.000 0.00 0.00 0.00 2.40
597 599 2.371104 GGCCCCCTTCCCCCTAAT 60.371 66.667 0.00 0.00 0.00 1.73
598 600 4.791184 GGGCCCCCTTCCCCCTAA 62.791 72.222 12.23 0.00 37.81 2.69
609 611 4.986708 TTTTCACCGCTGGGCCCC 62.987 66.667 22.27 2.97 36.48 5.80
610 612 2.679996 ATTTTCACCGCTGGGCCC 60.680 61.111 17.59 17.59 36.48 5.80
612 614 1.508088 CTGATTTTCACCGCTGGGC 59.492 57.895 0.00 0.00 36.48 5.36
613 615 0.322456 TCCTGATTTTCACCGCTGGG 60.322 55.000 0.00 0.00 40.11 4.45
614 616 1.089920 CTCCTGATTTTCACCGCTGG 58.910 55.000 0.00 0.00 0.00 4.85
615 617 1.089920 CCTCCTGATTTTCACCGCTG 58.910 55.000 0.00 0.00 0.00 5.18
616 618 0.035056 CCCTCCTGATTTTCACCGCT 60.035 55.000 0.00 0.00 0.00 5.52
618 620 0.394352 CCCCCTCCTGATTTTCACCG 60.394 60.000 0.00 0.00 0.00 4.94
619 621 3.596362 CCCCCTCCTGATTTTCACC 57.404 57.895 0.00 0.00 0.00 4.02
637 639 4.660938 ACCCCTTGCTCGCCAACC 62.661 66.667 0.00 0.00 0.00 3.77
638 640 3.056328 GACCCCTTGCTCGCCAAC 61.056 66.667 0.00 0.00 0.00 3.77
643 645 1.153628 CTTACGGACCCCTTGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
644 646 0.108281 GTCTTACGGACCCCTTGCTC 60.108 60.000 0.00 0.00 38.93 4.26
645 647 1.980844 GTCTTACGGACCCCTTGCT 59.019 57.895 0.00 0.00 38.93 3.91
646 648 4.611961 GTCTTACGGACCCCTTGC 57.388 61.111 0.00 0.00 38.93 4.01
653 655 1.315257 TACGGGCTGGTCTTACGGAC 61.315 60.000 0.00 0.00 43.79 4.79
656 658 0.244450 TGTTACGGGCTGGTCTTACG 59.756 55.000 0.00 0.00 0.00 3.18
657 659 2.005560 GCTGTTACGGGCTGGTCTTAC 61.006 57.143 0.00 0.00 0.00 2.34
658 660 0.248289 GCTGTTACGGGCTGGTCTTA 59.752 55.000 0.00 0.00 0.00 2.10
660 662 1.481056 AAGCTGTTACGGGCTGGTCT 61.481 55.000 0.00 0.00 38.91 3.85
662 664 0.605589 GAAAGCTGTTACGGGCTGGT 60.606 55.000 0.00 0.00 38.91 4.00
665 667 1.375523 CGGAAAGCTGTTACGGGCT 60.376 57.895 5.63 0.00 40.85 5.19
667 669 1.997606 CTAACGGAAAGCTGTTACGGG 59.002 52.381 14.82 4.50 43.23 5.28
668 670 2.410730 CACTAACGGAAAGCTGTTACGG 59.589 50.000 14.82 0.00 43.23 4.02
671 673 4.240096 GCTACACTAACGGAAAGCTGTTA 58.760 43.478 0.00 0.00 43.23 2.41
672 674 3.064931 GCTACACTAACGGAAAGCTGTT 58.935 45.455 0.00 0.00 45.31 3.16
673 675 2.036733 TGCTACACTAACGGAAAGCTGT 59.963 45.455 0.00 0.00 34.29 4.40
674 676 2.683968 TGCTACACTAACGGAAAGCTG 58.316 47.619 0.00 0.00 0.00 4.24
675 677 3.611766 ATGCTACACTAACGGAAAGCT 57.388 42.857 0.00 0.00 0.00 3.74
677 679 5.856455 CCAAAAATGCTACACTAACGGAAAG 59.144 40.000 0.00 0.00 0.00 2.62
678 680 5.299782 ACCAAAAATGCTACACTAACGGAAA 59.700 36.000 0.00 0.00 0.00 3.13
679 681 4.822896 ACCAAAAATGCTACACTAACGGAA 59.177 37.500 0.00 0.00 0.00 4.30
681 683 4.472286 CACCAAAAATGCTACACTAACGG 58.528 43.478 0.00 0.00 0.00 4.44
682 684 3.911964 GCACCAAAAATGCTACACTAACG 59.088 43.478 0.00 0.00 40.08 3.18
692 694 2.453983 TTGGCTAGCACCAAAAATGC 57.546 45.000 18.24 0.00 46.65 3.56
719 721 1.221840 GTCATCCATGAGCCCGTGT 59.778 57.895 0.00 0.00 37.51 4.49
776 932 1.138047 GCGATCCGTGTGACTAACCG 61.138 60.000 0.00 0.00 0.00 4.44
800 956 2.409870 CGCTGGAAGGTTGGCCATC 61.410 63.158 6.09 5.53 37.19 3.51
801 957 2.361610 CGCTGGAAGGTTGGCCAT 60.362 61.111 6.09 0.00 37.19 4.40
812 969 2.432456 GTGACGATGTGCGCTGGA 60.432 61.111 9.73 0.00 46.04 3.86
826 983 0.178926 TAGGGAAGGTTGGACGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
839 996 0.980754 TCAGCCGCTGGATTAGGGAA 60.981 55.000 20.23 0.00 41.61 3.97
915 1072 1.367665 GCGCGCGTACCATGAAATC 60.368 57.895 32.35 5.70 0.00 2.17
952 1115 1.996748 CCGGGGTTAAGTAGGGGCA 60.997 63.158 0.00 0.00 0.00 5.36
1021 1193 3.741476 CTGGGGAGTTTGCTGCGC 61.741 66.667 0.00 0.00 44.23 6.09
1492 1665 4.225984 GCTAGATCATGACACGATGAGAC 58.774 47.826 0.00 0.00 35.81 3.36
1503 1689 1.114627 ACAGCACGGCTAGATCATGA 58.885 50.000 0.00 0.00 36.40 3.07
1575 1761 7.652727 AGAAAGGTAAACAGAGCTTTTTCATC 58.347 34.615 2.49 0.00 44.87 2.92
1615 1807 7.254185 CCAAACAACATCAACAATTCTGAACAG 60.254 37.037 0.00 0.00 0.00 3.16
1645 1837 2.942804 TGCAGATTGTTCAGTTCCCAA 58.057 42.857 0.00 0.00 0.00 4.12
1666 1858 1.671742 GGAGCAACTCCGGTTCAGA 59.328 57.895 0.00 0.00 41.08 3.27
1687 1880 8.538409 AAGATTCCTGTTGTTTATGCAAATTC 57.462 30.769 0.00 0.00 0.00 2.17
1721 1914 1.879575 TTCCCAGGTCTAGGTGGATG 58.120 55.000 7.95 0.00 35.67 3.51
1727 1920 2.791655 GGTTTGTTTCCCAGGTCTAGG 58.208 52.381 0.00 0.00 0.00 3.02
1758 1951 1.226491 CTACCGTCGGCTTACGTGG 60.226 63.158 12.28 0.00 44.69 4.94
1785 1978 1.322538 GCCTGCCGGATGGAATTTGT 61.323 55.000 5.05 0.00 37.49 2.83
1912 2105 2.746359 GCAGGCCGATATGCTCCT 59.254 61.111 7.42 0.00 39.38 3.69
1925 2132 4.101448 CTCCGGGGTTCCAGCAGG 62.101 72.222 0.00 0.00 0.00 4.85
1960 2167 2.252855 CGCCTATCTCGTCCGAGC 59.747 66.667 11.71 0.13 41.71 5.03
2034 2241 0.179108 GGCCACTTATCGCTCGAGTT 60.179 55.000 15.13 2.09 0.00 3.01
2035 2242 1.038130 AGGCCACTTATCGCTCGAGT 61.038 55.000 15.13 0.00 0.00 4.18
2036 2243 0.103208 AAGGCCACTTATCGCTCGAG 59.897 55.000 8.45 8.45 34.49 4.04
2037 2244 0.535335 AAAGGCCACTTATCGCTCGA 59.465 50.000 5.01 0.00 35.41 4.04
2038 2245 1.859080 GTAAAGGCCACTTATCGCTCG 59.141 52.381 5.01 0.00 35.41 5.03
2039 2246 2.210961 GGTAAAGGCCACTTATCGCTC 58.789 52.381 5.01 0.00 35.41 5.03
2040 2247 1.557832 TGGTAAAGGCCACTTATCGCT 59.442 47.619 5.01 0.00 35.41 4.93
2041 2248 1.940613 CTGGTAAAGGCCACTTATCGC 59.059 52.381 5.01 0.00 35.41 4.58
2042 2249 3.261981 ACTGGTAAAGGCCACTTATCG 57.738 47.619 5.01 2.33 35.41 2.92
2043 2250 7.310664 GTTTAAACTGGTAAAGGCCACTTATC 58.689 38.462 11.18 2.95 35.41 1.75
2044 2251 6.072342 CGTTTAAACTGGTAAAGGCCACTTAT 60.072 38.462 16.01 0.00 35.41 1.73
2045 2252 5.239087 CGTTTAAACTGGTAAAGGCCACTTA 59.761 40.000 16.01 0.00 35.41 2.24
2046 2253 4.037089 CGTTTAAACTGGTAAAGGCCACTT 59.963 41.667 16.01 0.00 38.99 3.16
2047 2254 3.566742 CGTTTAAACTGGTAAAGGCCACT 59.433 43.478 16.01 0.00 34.36 4.00
2048 2255 3.565063 TCGTTTAAACTGGTAAAGGCCAC 59.435 43.478 16.01 0.00 34.36 5.01
2049 2256 3.818180 TCGTTTAAACTGGTAAAGGCCA 58.182 40.909 16.01 0.00 36.97 5.36
2050 2257 5.381174 AATCGTTTAAACTGGTAAAGGCC 57.619 39.130 16.01 0.00 31.81 5.19
2051 2258 8.238631 TGATAAATCGTTTAAACTGGTAAAGGC 58.761 33.333 16.01 0.00 31.81 4.35
2082 2289 6.786122 AGGGCCAATTTAACACTTAACTAGA 58.214 36.000 6.18 0.00 0.00 2.43
2089 2296 3.951680 CGGATAGGGCCAATTTAACACTT 59.048 43.478 6.18 0.00 0.00 3.16
2094 2301 3.673543 AACCGGATAGGGCCAATTTAA 57.326 42.857 9.46 0.00 46.96 1.52
2106 2313 1.706305 ACCTTGGAACCAAACCGGATA 59.294 47.619 9.46 0.00 38.63 2.59
2110 2317 1.605232 GTGTACCTTGGAACCAAACCG 59.395 52.381 7.68 1.53 35.33 4.44
2120 2327 2.330231 CGCAACAATGTGTACCTTGG 57.670 50.000 5.30 0.00 32.29 3.61
2158 2365 2.493414 AGCTGCTGAAAATGCTCTCT 57.507 45.000 0.00 0.00 0.00 3.10
2159 2366 2.159407 GGAAGCTGCTGAAAATGCTCTC 60.159 50.000 1.35 0.00 34.38 3.20
2210 2420 3.301794 TGATGACCCTCCATGGATTTG 57.698 47.619 16.63 9.26 38.35 2.32
2211 2421 4.079038 TCAATGATGACCCTCCATGGATTT 60.079 41.667 16.63 1.78 38.35 2.17
2285 2495 5.487433 TGTGCATGAGTTAAGCTTAGCTAA 58.513 37.500 21.16 15.49 38.25 3.09
2307 2517 8.200792 AGCAACTAATCAGGTTATCTAGAACTG 58.799 37.037 0.00 3.77 0.00 3.16
2333 2543 8.584157 AGTTCACATGCATTTCTAACCATTTTA 58.416 29.630 0.00 0.00 0.00 1.52
2338 2549 6.472016 TCTAGTTCACATGCATTTCTAACCA 58.528 36.000 0.00 0.00 0.00 3.67
2353 2564 2.655474 CGCGTGTTACACTCTAGTTCAC 59.345 50.000 13.86 0.00 31.34 3.18
2358 2569 1.978542 AAGCGCGTGTTACACTCTAG 58.021 50.000 13.86 3.40 31.34 2.43
2359 2570 2.055838 CAAAGCGCGTGTTACACTCTA 58.944 47.619 13.86 0.00 31.34 2.43
2360 2571 0.859232 CAAAGCGCGTGTTACACTCT 59.141 50.000 13.86 5.12 31.34 3.24
2361 2572 0.721483 GCAAAGCGCGTGTTACACTC 60.721 55.000 13.86 4.57 31.34 3.51
2362 2573 1.278637 GCAAAGCGCGTGTTACACT 59.721 52.632 13.86 0.00 31.34 3.55
2363 2574 1.724581 GGCAAAGCGCGTGTTACAC 60.725 57.895 8.43 5.27 43.84 2.90
2364 2575 2.634777 GGCAAAGCGCGTGTTACA 59.365 55.556 8.43 0.00 43.84 2.41
2365 2576 2.127003 GGGCAAAGCGCGTGTTAC 60.127 61.111 8.43 0.00 43.84 2.50
2366 2577 3.358707 GGGGCAAAGCGCGTGTTA 61.359 61.111 8.43 0.00 42.53 2.41
2373 2584 4.084888 GAACGACGGGGCAAAGCG 62.085 66.667 0.00 0.00 0.00 4.68
2374 2585 2.183858 GAAGAACGACGGGGCAAAGC 62.184 60.000 0.00 0.00 0.00 3.51
2375 2586 1.866925 GAAGAACGACGGGGCAAAG 59.133 57.895 0.00 0.00 0.00 2.77
2376 2587 1.957186 CGAAGAACGACGGGGCAAA 60.957 57.895 0.00 0.00 45.77 3.68
2377 2588 2.356553 CGAAGAACGACGGGGCAA 60.357 61.111 0.00 0.00 45.77 4.52
2378 2589 4.367023 CCGAAGAACGACGGGGCA 62.367 66.667 0.00 0.00 45.77 5.36
2383 2594 1.058590 CTCACGACCGAAGAACGACG 61.059 60.000 0.00 0.00 45.77 5.12
2384 2595 0.040603 ACTCACGACCGAAGAACGAC 60.041 55.000 0.00 0.00 45.77 4.34
2385 2596 0.664761 AACTCACGACCGAAGAACGA 59.335 50.000 0.00 0.00 45.77 3.85
2386 2597 2.320805 TAACTCACGACCGAAGAACG 57.679 50.000 0.00 0.00 42.18 3.95
2387 2598 3.636381 ACTTAACTCACGACCGAAGAAC 58.364 45.455 0.00 0.00 0.00 3.01
2388 2599 3.996150 ACTTAACTCACGACCGAAGAA 57.004 42.857 0.00 0.00 0.00 2.52
2389 2600 3.996150 AACTTAACTCACGACCGAAGA 57.004 42.857 0.00 0.00 0.00 2.87
2390 2601 4.046462 TCAAACTTAACTCACGACCGAAG 58.954 43.478 0.00 0.00 0.00 3.79
2391 2602 4.044336 TCAAACTTAACTCACGACCGAA 57.956 40.909 0.00 0.00 0.00 4.30
2392 2603 3.713858 TCAAACTTAACTCACGACCGA 57.286 42.857 0.00 0.00 0.00 4.69
2393 2604 5.575606 ACATATCAAACTTAACTCACGACCG 59.424 40.000 0.00 0.00 0.00 4.79
2394 2605 6.963049 ACATATCAAACTTAACTCACGACC 57.037 37.500 0.00 0.00 0.00 4.79
2417 2628 9.562583 GCCGTCATAAATCAAGTACAAAATAAA 57.437 29.630 0.00 0.00 0.00 1.40
2418 2629 8.185505 GGCCGTCATAAATCAAGTACAAAATAA 58.814 33.333 0.00 0.00 0.00 1.40
2419 2630 7.201750 GGGCCGTCATAAATCAAGTACAAAATA 60.202 37.037 0.00 0.00 0.00 1.40
2420 2631 6.405397 GGGCCGTCATAAATCAAGTACAAAAT 60.405 38.462 0.00 0.00 0.00 1.82
2421 2632 5.106078 GGGCCGTCATAAATCAAGTACAAAA 60.106 40.000 0.00 0.00 0.00 2.44
2422 2633 4.396790 GGGCCGTCATAAATCAAGTACAAA 59.603 41.667 0.00 0.00 0.00 2.83
2423 2634 3.942748 GGGCCGTCATAAATCAAGTACAA 59.057 43.478 0.00 0.00 0.00 2.41
2424 2635 3.537580 GGGCCGTCATAAATCAAGTACA 58.462 45.455 0.00 0.00 0.00 2.90
2425 2636 2.542595 CGGGCCGTCATAAATCAAGTAC 59.457 50.000 19.97 0.00 0.00 2.73
2426 2637 2.168936 ACGGGCCGTCATAAATCAAGTA 59.831 45.455 28.83 0.00 33.69 2.24
2427 2638 1.065709 ACGGGCCGTCATAAATCAAGT 60.066 47.619 28.83 0.00 33.69 3.16
2428 2639 1.663695 ACGGGCCGTCATAAATCAAG 58.336 50.000 28.83 0.00 33.69 3.02
2429 2640 1.740585 CAACGGGCCGTCATAAATCAA 59.259 47.619 34.23 0.00 39.99 2.57
2430 2641 1.066071 TCAACGGGCCGTCATAAATCA 60.066 47.619 34.23 0.00 39.99 2.57
2431 2642 1.658994 TCAACGGGCCGTCATAAATC 58.341 50.000 34.23 0.00 39.99 2.17
2432 2643 2.341846 ATCAACGGGCCGTCATAAAT 57.658 45.000 34.23 17.62 39.99 1.40
2433 2644 2.116827 AATCAACGGGCCGTCATAAA 57.883 45.000 34.23 16.08 39.99 1.40
2434 2645 2.983907 TAATCAACGGGCCGTCATAA 57.016 45.000 34.23 17.96 39.99 1.90
2435 2646 2.631062 AGATAATCAACGGGCCGTCATA 59.369 45.455 34.23 21.54 39.99 2.15
2436 2647 1.416401 AGATAATCAACGGGCCGTCAT 59.584 47.619 34.23 23.71 39.99 3.06
2437 2648 0.828022 AGATAATCAACGGGCCGTCA 59.172 50.000 34.23 22.44 39.99 4.35
2438 2649 1.949465 AAGATAATCAACGGGCCGTC 58.051 50.000 34.23 17.95 39.99 4.79
2439 2650 2.168936 TGTAAGATAATCAACGGGCCGT 59.831 45.455 28.83 28.83 43.97 5.68
2440 2651 2.828877 TGTAAGATAATCAACGGGCCG 58.171 47.619 27.06 27.06 0.00 6.13
2441 2652 6.170506 TGATATGTAAGATAATCAACGGGCC 58.829 40.000 0.00 0.00 0.00 5.80
2442 2653 7.849804 ATGATATGTAAGATAATCAACGGGC 57.150 36.000 0.00 0.00 0.00 6.13
2443 2654 9.219603 ACAATGATATGTAAGATAATCAACGGG 57.780 33.333 0.00 0.00 0.00 5.28
2475 2686 9.709387 AACCATTAGGCTAACAATTTAACCTAT 57.291 29.630 9.55 0.00 36.38 2.57
2477 2688 9.536510 TTAACCATTAGGCTAACAATTTAACCT 57.463 29.630 9.55 0.00 37.51 3.50
2482 2693 9.161629 GCAAATTAACCATTAGGCTAACAATTT 57.838 29.630 9.55 12.38 39.06 1.82
2483 2694 8.317679 TGCAAATTAACCATTAGGCTAACAATT 58.682 29.630 9.55 6.54 39.06 2.32
2484 2695 7.763985 GTGCAAATTAACCATTAGGCTAACAAT 59.236 33.333 9.55 2.21 39.06 2.71
2485 2696 7.093992 GTGCAAATTAACCATTAGGCTAACAA 58.906 34.615 9.55 0.00 39.06 2.83
2486 2697 6.209589 TGTGCAAATTAACCATTAGGCTAACA 59.790 34.615 9.55 0.00 39.06 2.41
2487 2698 6.626302 TGTGCAAATTAACCATTAGGCTAAC 58.374 36.000 9.55 0.00 39.06 2.34
2488 2699 6.842437 TGTGCAAATTAACCATTAGGCTAA 57.158 33.333 9.79 9.79 39.06 3.09
2489 2700 6.379703 ACATGTGCAAATTAACCATTAGGCTA 59.620 34.615 0.00 0.00 39.06 3.93
2490 2701 5.187576 ACATGTGCAAATTAACCATTAGGCT 59.812 36.000 0.00 0.00 39.06 4.58
2491 2702 5.418676 ACATGTGCAAATTAACCATTAGGC 58.581 37.500 0.00 0.00 39.06 3.93
2492 2703 8.031864 TGTAACATGTGCAAATTAACCATTAGG 58.968 33.333 0.00 0.00 42.21 2.69
2493 2704 8.978564 TGTAACATGTGCAAATTAACCATTAG 57.021 30.769 0.00 0.00 0.00 1.73
2494 2705 9.197694 GTTGTAACATGTGCAAATTAACCATTA 57.802 29.630 15.01 0.00 0.00 1.90
2495 2706 7.095857 CGTTGTAACATGTGCAAATTAACCATT 60.096 33.333 15.01 0.00 0.00 3.16
2496 2707 6.364706 CGTTGTAACATGTGCAAATTAACCAT 59.635 34.615 15.01 0.00 0.00 3.55
2497 2708 5.687730 CGTTGTAACATGTGCAAATTAACCA 59.312 36.000 15.01 0.00 0.00 3.67
2498 2709 5.117897 CCGTTGTAACATGTGCAAATTAACC 59.882 40.000 15.01 4.41 0.00 2.85
2499 2710 5.915758 TCCGTTGTAACATGTGCAAATTAAC 59.084 36.000 15.01 6.88 0.00 2.01
2500 2711 6.073327 TCCGTTGTAACATGTGCAAATTAA 57.927 33.333 15.01 2.87 0.00 1.40
2501 2712 5.690997 TCCGTTGTAACATGTGCAAATTA 57.309 34.783 15.01 4.19 0.00 1.40
2502 2713 4.576216 TCCGTTGTAACATGTGCAAATT 57.424 36.364 15.01 0.00 0.00 1.82
2503 2714 4.782019 ATCCGTTGTAACATGTGCAAAT 57.218 36.364 15.01 5.77 0.00 2.32
2504 2715 4.036852 TCAATCCGTTGTAACATGTGCAAA 59.963 37.500 15.01 1.35 36.69 3.68
2505 2716 3.565902 TCAATCCGTTGTAACATGTGCAA 59.434 39.130 0.00 5.52 36.69 4.08
2506 2717 3.142174 TCAATCCGTTGTAACATGTGCA 58.858 40.909 0.00 0.00 36.69 4.57
2507 2718 3.822594 TCAATCCGTTGTAACATGTGC 57.177 42.857 0.00 0.00 36.69 4.57
2508 2719 5.060816 GCATTTCAATCCGTTGTAACATGTG 59.939 40.000 0.00 0.00 36.69 3.21
2509 2720 5.160641 GCATTTCAATCCGTTGTAACATGT 58.839 37.500 0.00 0.00 36.69 3.21
2510 2721 5.159925 TGCATTTCAATCCGTTGTAACATG 58.840 37.500 0.00 0.00 36.69 3.21
2511 2722 5.384063 TGCATTTCAATCCGTTGTAACAT 57.616 34.783 0.00 0.00 36.69 2.71
2512 2723 4.837896 TGCATTTCAATCCGTTGTAACA 57.162 36.364 0.00 0.00 36.69 2.41
2513 2724 5.861251 TCAATGCATTTCAATCCGTTGTAAC 59.139 36.000 9.83 0.00 36.69 2.50
2514 2725 5.861251 GTCAATGCATTTCAATCCGTTGTAA 59.139 36.000 9.83 0.00 36.69 2.41
2515 2726 5.398169 GTCAATGCATTTCAATCCGTTGTA 58.602 37.500 9.83 0.00 36.69 2.41
2516 2727 4.236935 GTCAATGCATTTCAATCCGTTGT 58.763 39.130 9.83 0.00 36.69 3.32
2517 2728 3.301379 CGTCAATGCATTTCAATCCGTTG 59.699 43.478 9.83 0.00 36.65 4.10
2518 2729 3.190327 TCGTCAATGCATTTCAATCCGTT 59.810 39.130 9.83 0.00 0.00 4.44
2519 2730 2.746904 TCGTCAATGCATTTCAATCCGT 59.253 40.909 9.83 0.00 0.00 4.69
2520 2731 3.403613 TCGTCAATGCATTTCAATCCG 57.596 42.857 9.83 6.07 0.00 4.18
2521 2732 5.342433 TGATTCGTCAATGCATTTCAATCC 58.658 37.500 9.83 0.00 0.00 3.01
2522 2733 6.529125 ACTTGATTCGTCAATGCATTTCAATC 59.471 34.615 17.76 16.76 0.00 2.67
2523 2734 6.392354 ACTTGATTCGTCAATGCATTTCAAT 58.608 32.000 17.76 10.53 0.00 2.57
2524 2735 5.771469 ACTTGATTCGTCAATGCATTTCAA 58.229 33.333 9.83 14.41 0.00 2.69
2525 2736 5.375417 ACTTGATTCGTCAATGCATTTCA 57.625 34.783 9.83 7.18 0.00 2.69
2526 2737 5.061311 CCAACTTGATTCGTCAATGCATTTC 59.939 40.000 9.83 4.35 0.00 2.17
2527 2738 4.925054 CCAACTTGATTCGTCAATGCATTT 59.075 37.500 9.83 0.00 0.00 2.32
2528 2739 4.218200 TCCAACTTGATTCGTCAATGCATT 59.782 37.500 5.99 5.99 0.00 3.56
2529 2740 3.758023 TCCAACTTGATTCGTCAATGCAT 59.242 39.130 0.00 0.00 0.00 3.96
2530 2741 3.145286 TCCAACTTGATTCGTCAATGCA 58.855 40.909 0.00 0.00 0.00 3.96
2531 2742 3.829886 TCCAACTTGATTCGTCAATGC 57.170 42.857 0.00 0.00 0.00 3.56
2532 2743 5.352293 TCTCATCCAACTTGATTCGTCAATG 59.648 40.000 0.00 0.00 0.00 2.82
2533 2744 5.491070 TCTCATCCAACTTGATTCGTCAAT 58.509 37.500 0.00 0.00 0.00 2.57
2534 2745 4.893608 TCTCATCCAACTTGATTCGTCAA 58.106 39.130 0.00 0.00 0.00 3.18
2535 2746 4.535526 TCTCATCCAACTTGATTCGTCA 57.464 40.909 0.00 0.00 0.00 4.35
2536 2747 7.116090 CAGATATCTCATCCAACTTGATTCGTC 59.884 40.741 1.03 0.00 0.00 4.20
2537 2748 6.927936 CAGATATCTCATCCAACTTGATTCGT 59.072 38.462 1.03 0.00 0.00 3.85
2538 2749 6.128607 GCAGATATCTCATCCAACTTGATTCG 60.129 42.308 1.03 0.00 0.00 3.34
2539 2750 6.149142 GGCAGATATCTCATCCAACTTGATTC 59.851 42.308 1.03 0.00 0.00 2.52
2540 2751 6.002704 GGCAGATATCTCATCCAACTTGATT 58.997 40.000 1.03 0.00 0.00 2.57
2541 2752 5.072736 TGGCAGATATCTCATCCAACTTGAT 59.927 40.000 1.03 0.00 0.00 2.57
2542 2753 4.409901 TGGCAGATATCTCATCCAACTTGA 59.590 41.667 1.03 0.00 0.00 3.02
2543 2754 4.711399 TGGCAGATATCTCATCCAACTTG 58.289 43.478 1.03 0.00 0.00 3.16
2544 2755 5.558818 GATGGCAGATATCTCATCCAACTT 58.441 41.667 17.74 6.41 31.59 2.66
2545 2756 4.322574 CGATGGCAGATATCTCATCCAACT 60.323 45.833 20.62 8.85 34.24 3.16
2546 2757 3.931468 CGATGGCAGATATCTCATCCAAC 59.069 47.826 20.62 16.28 34.24 3.77
2547 2758 3.055602 CCGATGGCAGATATCTCATCCAA 60.056 47.826 20.62 8.33 34.24 3.53
2548 2759 2.498885 CCGATGGCAGATATCTCATCCA 59.501 50.000 20.62 18.45 34.24 3.41
2549 2760 2.499289 ACCGATGGCAGATATCTCATCC 59.501 50.000 20.62 14.70 34.24 3.51
2550 2761 3.446873 AGACCGATGGCAGATATCTCATC 59.553 47.826 18.25 18.25 34.37 2.92
2551 2762 3.439154 AGACCGATGGCAGATATCTCAT 58.561 45.455 1.03 4.40 0.00 2.90
2552 2763 2.822561 GAGACCGATGGCAGATATCTCA 59.177 50.000 1.03 0.00 33.00 3.27
2553 2764 3.088532 AGAGACCGATGGCAGATATCTC 58.911 50.000 1.03 11.58 32.94 2.75
2554 2765 3.168035 AGAGACCGATGGCAGATATCT 57.832 47.619 0.00 0.00 0.00 1.98
2555 2766 3.583806 CAAGAGACCGATGGCAGATATC 58.416 50.000 0.00 0.00 0.00 1.63
2556 2767 2.289320 GCAAGAGACCGATGGCAGATAT 60.289 50.000 0.00 0.00 0.00 1.63
2557 2768 1.069204 GCAAGAGACCGATGGCAGATA 59.931 52.381 0.00 0.00 0.00 1.98
2558 2769 0.179062 GCAAGAGACCGATGGCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
2559 2770 1.219124 GCAAGAGACCGATGGCAGA 59.781 57.895 0.00 0.00 0.00 4.26
2560 2771 1.078918 TGCAAGAGACCGATGGCAG 60.079 57.895 0.00 0.00 0.00 4.85
2561 2772 1.078918 CTGCAAGAGACCGATGGCA 60.079 57.895 0.00 0.00 34.07 4.92
2562 2773 1.219124 TCTGCAAGAGACCGATGGC 59.781 57.895 0.00 0.00 38.67 4.40
2572 2783 6.882610 ATGACTTTTACATTGTCTGCAAGA 57.117 33.333 0.00 0.00 43.69 3.02
2573 2784 6.744537 GCTATGACTTTTACATTGTCTGCAAG 59.255 38.462 0.00 0.00 38.10 4.01
2574 2785 6.349280 GGCTATGACTTTTACATTGTCTGCAA 60.349 38.462 0.00 0.00 39.16 4.08
2575 2786 5.123820 GGCTATGACTTTTACATTGTCTGCA 59.876 40.000 0.00 0.00 0.00 4.41
2576 2787 5.355350 AGGCTATGACTTTTACATTGTCTGC 59.645 40.000 0.00 0.00 35.14 4.26
2577 2788 6.992063 AGGCTATGACTTTTACATTGTCTG 57.008 37.500 0.00 0.00 35.14 3.51
2578 2789 7.168219 TGAAGGCTATGACTTTTACATTGTCT 58.832 34.615 0.00 0.00 37.13 3.41
2579 2790 7.377766 TGAAGGCTATGACTTTTACATTGTC 57.622 36.000 0.00 0.00 26.99 3.18
2580 2791 7.448469 AGTTGAAGGCTATGACTTTTACATTGT 59.552 33.333 0.00 0.00 26.99 2.71
2581 2792 7.820648 AGTTGAAGGCTATGACTTTTACATTG 58.179 34.615 0.00 0.00 26.99 2.82
2582 2793 8.409358 AAGTTGAAGGCTATGACTTTTACATT 57.591 30.769 0.00 0.00 26.99 2.71
2583 2794 8.409358 AAAGTTGAAGGCTATGACTTTTACAT 57.591 30.769 13.16 0.00 37.27 2.29
2584 2795 7.817418 AAAGTTGAAGGCTATGACTTTTACA 57.183 32.000 13.16 0.00 37.27 2.41
2585 2796 7.595130 CCAAAAGTTGAAGGCTATGACTTTTAC 59.405 37.037 22.88 1.66 44.28 2.01
2586 2797 7.286775 ACCAAAAGTTGAAGGCTATGACTTTTA 59.713 33.333 22.88 0.00 44.28 1.52
2587 2798 6.098266 ACCAAAAGTTGAAGGCTATGACTTTT 59.902 34.615 20.06 20.06 45.93 2.27
2588 2799 5.598417 ACCAAAAGTTGAAGGCTATGACTTT 59.402 36.000 13.16 13.16 40.99 2.66
2589 2800 5.140454 ACCAAAAGTTGAAGGCTATGACTT 58.860 37.500 0.00 0.00 31.13 3.01
2590 2801 4.729868 ACCAAAAGTTGAAGGCTATGACT 58.270 39.130 0.00 0.00 0.00 3.41
2591 2802 6.759497 ATACCAAAAGTTGAAGGCTATGAC 57.241 37.500 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.