Multiple sequence alignment - TraesCS3B01G299100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G299100 chr3B 100.000 6505 0 0 1334 7838 479905690 479899186 0.000000e+00 12013.0
1 TraesCS3B01G299100 chr3B 100.000 1119 0 0 1 1119 479907023 479905905 0.000000e+00 2067.0
2 TraesCS3B01G299100 chr3B 98.404 188 3 0 3230 3417 729209739 729209926 1.630000e-86 331.0
3 TraesCS3B01G299100 chr3B 98.901 91 1 0 102 192 101920432 101920522 6.290000e-36 163.0
4 TraesCS3B01G299100 chr3B 84.615 117 14 1 2 114 125776590 125776474 6.430000e-21 113.0
5 TraesCS3B01G299100 chr3B 97.826 46 1 0 7438 7483 502937717 502937672 6.520000e-11 80.5
6 TraesCS3B01G299100 chr3D 95.085 3764 143 27 3417 7160 368885182 368881441 0.000000e+00 5888.0
7 TraesCS3B01G299100 chr3D 99.160 714 4 2 2506 3218 368885916 368885204 0.000000e+00 1284.0
8 TraesCS3B01G299100 chr3D 98.373 553 8 1 1334 1886 368886457 368885906 0.000000e+00 970.0
9 TraesCS3B01G299100 chr3D 96.253 427 13 3 694 1119 368887359 368886935 0.000000e+00 697.0
10 TraesCS3B01G299100 chr3D 90.171 234 17 2 7535 7768 368880965 368880738 4.600000e-77 300.0
11 TraesCS3B01G299100 chr3D 78.981 314 58 7 361 671 481569758 481570066 2.870000e-49 207.0
12 TraesCS3B01G299100 chr3D 80.934 257 44 5 5660 5914 335673095 335673348 1.730000e-46 198.0
13 TraesCS3B01G299100 chr3D 79.389 262 37 13 5655 5913 127253706 127253953 1.350000e-37 169.0
14 TraesCS3B01G299100 chr3D 98.901 91 1 0 102 192 598872490 598872580 6.290000e-36 163.0
15 TraesCS3B01G299100 chr3D 78.599 257 42 12 5658 5913 563448939 563449183 2.930000e-34 158.0
16 TraesCS3B01G299100 chr3D 77.823 248 46 7 5666 5913 64765324 64765562 2.280000e-30 145.0
17 TraesCS3B01G299100 chr3D 82.424 165 27 2 199 362 35042660 35042823 8.200000e-30 143.0
18 TraesCS3B01G299100 chr3D 86.957 115 10 5 1 114 547994035 547993925 2.970000e-24 124.0
19 TraesCS3B01G299100 chr3D 74.224 322 54 22 359 666 580129361 580129667 2.990000e-19 108.0
20 TraesCS3B01G299100 chr3A 94.775 3694 153 18 3644 7312 490167951 490164273 0.000000e+00 5716.0
21 TraesCS3B01G299100 chr3A 97.743 709 15 1 2509 3216 490168858 490168150 0.000000e+00 1219.0
22 TraesCS3B01G299100 chr3A 99.037 623 6 0 1887 2509 697650953 697650331 0.000000e+00 1118.0
23 TraesCS3B01G299100 chr3A 95.338 429 16 3 694 1119 490169909 490169482 0.000000e+00 678.0
24 TraesCS3B01G299100 chr3A 88.050 477 39 6 1334 1792 490169446 490168970 4.130000e-152 549.0
25 TraesCS3B01G299100 chr3A 90.220 409 27 5 7438 7838 490163931 490163528 9.010000e-144 521.0
26 TraesCS3B01G299100 chr3A 96.447 197 6 1 3230 3425 259336872 259337068 2.730000e-84 324.0
27 TraesCS3B01G299100 chr3A 97.253 182 5 0 3417 3598 490168126 490167945 7.640000e-80 309.0
28 TraesCS3B01G299100 chr3A 82.792 308 50 3 361 666 692964586 692964892 1.000000e-68 272.0
29 TraesCS3B01G299100 chr3A 78.596 285 49 11 5638 5916 723470719 723470441 2.250000e-40 178.0
30 TraesCS3B01G299100 chr3A 85.600 125 15 1 5470 5591 490166082 490165958 2.300000e-25 128.0
31 TraesCS3B01G299100 chr3A 80.240 167 30 2 192 357 654195879 654195715 1.070000e-23 122.0
32 TraesCS3B01G299100 chr3A 85.088 114 11 1 1 114 83401111 83401004 2.310000e-20 111.0
33 TraesCS3B01G299100 chr3A 95.745 47 1 1 7438 7483 508202849 508202803 3.030000e-09 75.0
34 TraesCS3B01G299100 chr3A 97.143 35 1 0 7365 7399 490164167 490164133 8.490000e-05 60.2
35 TraesCS3B01G299100 chr5B 99.200 625 4 1 1887 2510 628723309 628722685 0.000000e+00 1125.0
36 TraesCS3B01G299100 chr5B 97.802 91 2 0 102 192 419105370 419105460 2.930000e-34 158.0
37 TraesCS3B01G299100 chr5B 85.841 113 14 2 1 113 702255331 702255221 1.380000e-22 119.0
38 TraesCS3B01G299100 chr5B 84.211 114 15 3 1 113 387160130 387160241 2.990000e-19 108.0
39 TraesCS3B01G299100 chr2B 98.716 623 8 0 1887 2509 186290604 186289982 0.000000e+00 1107.0
40 TraesCS3B01G299100 chr7B 98.246 627 10 1 1887 2513 616865902 616865277 0.000000e+00 1096.0
41 TraesCS3B01G299100 chr7B 97.409 193 5 0 3229 3421 51618836 51618644 5.860000e-86 329.0
42 TraesCS3B01G299100 chr7B 97.423 194 2 1 3227 3420 83032713 83032903 2.110000e-85 327.0
43 TraesCS3B01G299100 chr7B 81.848 303 54 1 361 662 726159787 726159485 3.630000e-63 254.0
44 TraesCS3B01G299100 chrUn 97.440 625 15 1 1886 2509 7451733 7451109 0.000000e+00 1064.0
45 TraesCS3B01G299100 chrUn 96.800 625 18 1 1887 2509 50779417 50778793 0.000000e+00 1042.0
46 TraesCS3B01G299100 chrUn 78.039 255 41 13 5661 5913 373039037 373038796 6.340000e-31 147.0
47 TraesCS3B01G299100 chrUn 77.165 254 47 11 5660 5911 30689665 30689421 3.810000e-28 137.0
48 TraesCS3B01G299100 chrUn 76.493 268 41 16 5661 5923 112564287 112564537 8.260000e-25 126.0
49 TraesCS3B01G299100 chrUn 98.413 63 1 0 130 192 455046225 455046287 2.310000e-20 111.0
50 TraesCS3B01G299100 chrUn 91.304 69 5 1 5659 5727 32189691 32189758 8.370000e-15 93.5
51 TraesCS3B01G299100 chrUn 100.000 40 0 0 7438 7477 1071648 1071687 3.030000e-09 75.0
52 TraesCS3B01G299100 chrUn 100.000 40 0 0 7438 7477 300084925 300084886 3.030000e-09 75.0
53 TraesCS3B01G299100 chrUn 100.000 40 0 0 7438 7477 304178665 304178704 3.030000e-09 75.0
54 TraesCS3B01G299100 chrUn 100.000 35 0 0 7438 7472 368328731 368328765 1.830000e-06 65.8
55 TraesCS3B01G299100 chrUn 97.143 35 1 0 7438 7472 50337280 50337314 8.490000e-05 60.2
56 TraesCS3B01G299100 chrUn 100.000 31 0 0 7444 7474 50415342 50415312 3.050000e-04 58.4
57 TraesCS3B01G299100 chr1B 96.805 626 18 1 1886 2509 271741464 271742089 0.000000e+00 1044.0
58 TraesCS3B01G299100 chr1B 96.392 194 4 1 3230 3423 110622999 110622809 4.560000e-82 316.0
59 TraesCS3B01G299100 chr1B 84.295 312 46 3 357 666 470431037 470431347 1.280000e-77 302.0
60 TraesCS3B01G299100 chr1B 79.401 267 45 10 5651 5913 624979821 624980081 6.250000e-41 180.0
61 TraesCS3B01G299100 chr1B 94.000 50 3 0 7428 7477 634309244 634309195 8.430000e-10 76.8
62 TraesCS3B01G299100 chr6A 96.640 625 18 2 1887 2509 307365335 307365958 0.000000e+00 1035.0
63 TraesCS3B01G299100 chr6A 82.407 108 15 4 6 113 224607992 224607889 3.010000e-14 91.6
64 TraesCS3B01G299100 chr6A 92.683 41 2 1 3 42 49735207 49735247 3.050000e-04 58.4
65 TraesCS3B01G299100 chr6B 96.320 625 23 0 1886 2510 237723275 237722651 0.000000e+00 1027.0
66 TraesCS3B01G299100 chr6B 97.409 193 2 1 3229 3421 49701616 49701427 7.580000e-85 326.0
67 TraesCS3B01G299100 chr6B 98.901 91 1 0 102 192 450079208 450079118 6.290000e-36 163.0
68 TraesCS3B01G299100 chr6B 85.321 109 13 3 5 113 698016442 698016337 8.320000e-20 110.0
69 TraesCS3B01G299100 chr5D 86.731 309 39 2 359 666 315823673 315823980 7.530000e-90 342.0
70 TraesCS3B01G299100 chr5D 80.315 254 41 8 5661 5913 350229155 350228910 4.830000e-42 183.0
71 TraesCS3B01G299100 chr5D 100.000 91 0 0 102 192 120798485 120798395 1.350000e-37 169.0
72 TraesCS3B01G299100 chr5D 79.231 260 39 9 5661 5914 57435864 57435614 4.860000e-37 167.0
73 TraesCS3B01G299100 chr5D 97.826 92 1 1 102 192 6182329 6182420 2.930000e-34 158.0
74 TraesCS3B01G299100 chr5D 97.802 91 2 0 102 192 503285915 503285825 2.930000e-34 158.0
75 TraesCS3B01G299100 chr5D 97.753 89 2 0 104 192 167070554 167070466 3.790000e-33 154.0
76 TraesCS3B01G299100 chr5D 77.947 263 43 12 5658 5913 135656959 135656705 4.900000e-32 150.0
77 TraesCS3B01G299100 chr5D 82.840 169 20 7 438 598 348346398 348346231 8.200000e-30 143.0
78 TraesCS3B01G299100 chr5D 93.478 92 4 2 102 192 409434179 409434089 1.370000e-27 135.0
79 TraesCS3B01G299100 chr5D 87.879 99 9 3 3 100 282376375 282376279 6.430000e-21 113.0
80 TraesCS3B01G299100 chr5D 86.420 81 10 1 34 114 398359186 398359107 3.900000e-13 87.9
81 TraesCS3B01G299100 chr5D 92.308 39 3 0 75 113 404765099 404765061 1.000000e-03 56.5
82 TraesCS3B01G299100 chr2A 97.927 193 4 0 3227 3419 28827576 28827384 1.260000e-87 335.0
83 TraesCS3B01G299100 chr2A 97.436 195 4 1 3229 3423 649490205 649490012 1.630000e-86 331.0
84 TraesCS3B01G299100 chr2A 84.839 310 46 1 361 669 678005441 678005132 2.120000e-80 311.0
85 TraesCS3B01G299100 chr2A 96.774 93 1 2 102 192 335832013 335832105 3.790000e-33 154.0
86 TraesCS3B01G299100 chr5A 96.907 194 6 0 3230 3423 596662162 596662355 7.580000e-85 326.0
87 TraesCS3B01G299100 chr5A 81.373 306 53 4 367 669 708685479 708685175 6.070000e-61 246.0
88 TraesCS3B01G299100 chr5A 80.063 316 58 5 361 673 588356962 588356649 6.120000e-56 230.0
89 TraesCS3B01G299100 chr5A 81.538 260 43 5 5658 5915 397510393 397510137 7.970000e-50 209.0
90 TraesCS3B01G299100 chr5A 80.843 261 41 8 5658 5912 426551435 426551178 6.200000e-46 196.0
91 TraesCS3B01G299100 chr5A 79.921 254 46 5 5662 5913 211625396 211625146 1.740000e-41 182.0
92 TraesCS3B01G299100 chr5A 81.481 189 33 2 479 665 77336111 77335923 3.790000e-33 154.0
93 TraesCS3B01G299100 chr5A 86.842 114 14 1 1 114 457002318 457002430 8.260000e-25 126.0
94 TraesCS3B01G299100 chr5A 84.722 72 11 0 361 432 32672531 32672460 1.090000e-08 73.1
95 TraesCS3B01G299100 chr5A 93.617 47 3 0 7438 7484 387225261 387225215 3.920000e-08 71.3
96 TraesCS3B01G299100 chr1A 83.226 310 48 4 361 669 554103437 554103743 1.670000e-71 281.0
97 TraesCS3B01G299100 chr1A 80.386 311 56 3 361 668 5464220 5463912 1.700000e-56 231.0
98 TraesCS3B01G299100 chr1A 79.767 257 42 10 5659 5913 555486183 555486431 2.250000e-40 178.0
99 TraesCS3B01G299100 chr1A 88.811 143 15 1 5658 5800 53033336 53033477 2.910000e-39 174.0
100 TraesCS3B01G299100 chr1A 79.352 247 50 1 370 615 65626002 65626248 1.050000e-38 172.0
101 TraesCS3B01G299100 chr7A 81.433 307 51 6 362 667 50632610 50632309 6.070000e-61 246.0
102 TraesCS3B01G299100 chr6D 80.892 314 54 5 358 666 456111354 456111042 7.860000e-60 243.0
103 TraesCS3B01G299100 chr6D 77.519 258 44 13 5658 5913 22077675 22077920 8.200000e-30 143.0
104 TraesCS3B01G299100 chr6D 77.606 259 43 11 5657 5913 232771189 232771434 8.200000e-30 143.0
105 TraesCS3B01G299100 chr6D 77.255 255 45 11 5660 5913 438515422 438515180 3.810000e-28 137.0
106 TraesCS3B01G299100 chr6D 85.271 129 18 1 5658 5786 57787207 57787334 1.770000e-26 132.0
107 TraesCS3B01G299100 chr6D 76.744 258 45 11 5660 5916 456019518 456019275 6.380000e-26 130.0
108 TraesCS3B01G299100 chr6D 88.073 109 11 2 5 113 311897199 311897305 2.300000e-25 128.0
109 TraesCS3B01G299100 chr6D 100.000 34 0 0 7438 7471 114190369 114190402 6.570000e-06 63.9
110 TraesCS3B01G299100 chr7D 81.496 254 44 3 5661 5913 1972306 1972055 1.030000e-48 206.0
111 TraesCS3B01G299100 chr7D 79.921 254 42 8 5661 5912 25494744 25494990 2.250000e-40 178.0
112 TraesCS3B01G299100 chr7D 85.321 109 12 4 5 113 161189629 161189525 8.320000e-20 110.0
113 TraesCS3B01G299100 chr7D 74.359 273 53 15 400 668 488126210 488126469 5.000000e-17 100.0
114 TraesCS3B01G299100 chr7D 91.111 45 4 0 63 107 46727328 46727372 2.360000e-05 62.1
115 TraesCS3B01G299100 chr2D 81.102 254 45 3 5661 5913 43503545 43503796 4.800000e-47 200.0
116 TraesCS3B01G299100 chr2D 79.231 260 45 8 5658 5913 491802615 491802869 1.050000e-38 172.0
117 TraesCS3B01G299100 chr2D 76.981 265 42 14 358 616 11167219 11166968 4.930000e-27 134.0
118 TraesCS3B01G299100 chr2D 88.235 51 6 0 63 113 410413797 410413847 2.360000e-05 62.1
119 TraesCS3B01G299100 chr4D 80.156 257 34 13 5660 5913 24775609 24775851 8.080000e-40 176.0
120 TraesCS3B01G299100 chr4D 79.457 258 38 13 5658 5913 489185600 489185844 1.350000e-37 169.0
121 TraesCS3B01G299100 chr4D 79.070 258 45 7 5657 5913 503566768 503567017 1.350000e-37 169.0
122 TraesCS3B01G299100 chr4D 78.626 262 46 9 5656 5913 252186811 252187066 1.750000e-36 165.0
123 TraesCS3B01G299100 chr4D 98.901 91 1 0 102 192 417108147 417108057 6.290000e-36 163.0
124 TraesCS3B01G299100 chr4D 84.286 140 21 1 5661 5800 503566570 503566708 1.370000e-27 135.0
125 TraesCS3B01G299100 chr4D 84.348 115 14 4 1 114 497886510 497886621 8.320000e-20 110.0
126 TraesCS3B01G299100 chr1D 79.693 261 34 15 5658 5914 213329566 213329321 3.760000e-38 171.0
127 TraesCS3B01G299100 chr1D 79.377 257 36 13 5660 5913 448103379 448103137 1.750000e-36 165.0
128 TraesCS3B01G299100 chr1D 98.901 91 1 0 102 192 51879458 51879548 6.290000e-36 163.0
129 TraesCS3B01G299100 chr1D 86.713 143 18 1 5658 5800 48731949 48732090 2.930000e-34 158.0
130 TraesCS3B01G299100 chr1D 97.802 91 1 1 102 192 254415679 254415590 1.050000e-33 156.0
131 TraesCS3B01G299100 chr1D 78.125 256 46 10 5658 5911 40915079 40914832 3.790000e-33 154.0
132 TraesCS3B01G299100 chr1D 78.210 257 36 14 5661 5914 217641474 217641713 6.340000e-31 147.0
133 TraesCS3B01G299100 chr1D 95.604 91 4 0 102 192 260890723 260890633 6.340000e-31 147.0
134 TraesCS3B01G299100 chr1D 78.475 223 43 4 361 579 59964539 59964318 2.950000e-29 141.0
135 TraesCS3B01G299100 chr1D 81.034 116 16 6 1 114 458359266 458359155 3.900000e-13 87.9
136 TraesCS3B01G299100 chr1D 100.000 42 0 0 7438 7479 415286909 415286868 2.340000e-10 78.7
137 TraesCS3B01G299100 chr1D 100.000 42 0 0 7438 7479 415287556 415287515 2.340000e-10 78.7
138 TraesCS3B01G299100 chr1D 100.000 40 0 0 7438 7477 461420015 461419976 3.030000e-09 75.0
139 TraesCS3B01G299100 chr1D 100.000 40 0 0 7438 7477 461493582 461493543 3.030000e-09 75.0
140 TraesCS3B01G299100 chr1D 100.000 40 0 0 7438 7477 461899730 461899769 3.030000e-09 75.0
141 TraesCS3B01G299100 chr1D 95.556 45 2 0 7438 7482 416592420 416592464 1.090000e-08 73.1
142 TraesCS3B01G299100 chr4B 97.802 91 2 0 102 192 464339868 464339778 2.930000e-34 158.0
143 TraesCS3B01G299100 chr4A 97.802 91 1 1 102 192 310731979 310732068 1.050000e-33 156.0
144 TraesCS3B01G299100 chr4A 96.703 91 2 1 103 192 309508513 309508603 4.900000e-32 150.0
145 TraesCS3B01G299100 chr4A 80.220 182 30 4 473 649 596167719 596167539 1.770000e-26 132.0
146 TraesCS3B01G299100 chr4A 95.000 40 2 0 75 114 673409229 673409190 6.570000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G299100 chr3B 479899186 479907023 7837 True 7040.000 12013 100.00000 1 7838 2 chr3B.!!$R3 7837
1 TraesCS3B01G299100 chr3D 368880738 368887359 6621 True 1827.800 5888 95.80840 694 7768 5 chr3D.!!$R2 7074
2 TraesCS3B01G299100 chr3A 490163528 490169909 6381 True 1147.525 5716 93.26525 694 7838 8 chr3A.!!$R6 7144
3 TraesCS3B01G299100 chr3A 697650331 697650953 622 True 1118.000 1118 99.03700 1887 2509 1 chr3A.!!$R4 622
4 TraesCS3B01G299100 chr5B 628722685 628723309 624 True 1125.000 1125 99.20000 1887 2510 1 chr5B.!!$R1 623
5 TraesCS3B01G299100 chr2B 186289982 186290604 622 True 1107.000 1107 98.71600 1887 2509 1 chr2B.!!$R1 622
6 TraesCS3B01G299100 chr7B 616865277 616865902 625 True 1096.000 1096 98.24600 1887 2513 1 chr7B.!!$R2 626
7 TraesCS3B01G299100 chrUn 7451109 7451733 624 True 1064.000 1064 97.44000 1886 2509 1 chrUn.!!$R1 623
8 TraesCS3B01G299100 chrUn 50778793 50779417 624 True 1042.000 1042 96.80000 1887 2509 1 chrUn.!!$R4 622
9 TraesCS3B01G299100 chr1B 271741464 271742089 625 False 1044.000 1044 96.80500 1886 2509 1 chr1B.!!$F1 623
10 TraesCS3B01G299100 chr6A 307365335 307365958 623 False 1035.000 1035 96.64000 1887 2509 1 chr6A.!!$F2 622
11 TraesCS3B01G299100 chr6B 237722651 237723275 624 True 1027.000 1027 96.32000 1886 2510 1 chr6B.!!$R2 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.040514 CAAGGATTTCACGCACGCAA 60.041 50.000 0.00 0.00 0.00 4.85 F
341 342 0.093535 CGTGATGCTAATATGGCGCG 59.906 55.000 0.00 0.00 0.00 6.86 F
359 360 0.179137 CGCGTGTTGGAGATGCTCTA 60.179 55.000 0.00 0.00 0.00 2.43 F
686 687 0.396811 AGGAGTGTTTTGGGACGGAG 59.603 55.000 0.00 0.00 0.00 4.63 F
687 688 0.605589 GGAGTGTTTTGGGACGGAGG 60.606 60.000 0.00 0.00 0.00 4.30 F
690 691 0.605589 GTGTTTTGGGACGGAGGGAG 60.606 60.000 0.00 0.00 0.00 4.30 F
692 693 0.605589 GTTTTGGGACGGAGGGAGTG 60.606 60.000 0.00 0.00 0.00 3.51 F
818 819 1.652012 CGAGCGAGTCTCCATCCTC 59.348 63.158 0.00 0.00 38.62 3.71 F
3254 3570 0.108329 GAGCCTTAGCGCAGTGGTAA 60.108 55.000 11.47 5.53 46.67 2.85 F
3290 3606 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 F
3299 3615 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53 F
5377 5700 0.111061 ATGAAGCACTCAGGTTGGCA 59.889 50.000 0.00 0.00 38.24 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 1622 2.337170 CACACGGGCACTACGTCA 59.663 61.111 0.00 0.0 43.58 4.35 R
1412 1679 2.464865 GAACAATCAGACGGATCCTCG 58.535 52.381 10.75 0.0 34.28 4.63 R
1884 2196 4.681483 GGTTTTAAAATGCACAGAGTGAGC 59.319 41.667 3.52 0.0 35.23 4.26 R
2610 2925 5.662208 AGCTAGATGCCTGCATAGATATTCT 59.338 40.000 4.30 0.0 44.23 2.40 R
2940 3255 0.610232 GTGCCCAAGCTCCATCTTGT 60.610 55.000 0.00 0.0 41.29 3.16 R
3218 3534 3.117738 AGGCTCCCCTTCTCAAACATATG 60.118 47.826 0.00 0.0 38.74 1.78 R
3221 3537 1.376649 AGGCTCCCCTTCTCAAACAT 58.623 50.000 0.00 0.0 38.74 2.71 R
3260 3576 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 R
4937 5256 0.380378 GAACTTGAACTTGCACGGCA 59.620 50.000 0.00 0.0 36.47 5.69 R
5215 5538 3.070590 TCGATGATTCATGCTCACCAGAT 59.929 43.478 3.32 0.0 0.00 2.90 R
5796 6129 3.185188 GTCGATAGTGTAGCCGTCGATAA 59.815 47.826 0.00 0.0 42.37 1.75 R
7817 8448 0.031616 AGGGAGCAGAGAGGGGTAAG 60.032 60.000 0.00 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.486796 GGAGCAAATGAGGAGGTGC 58.513 57.895 0.00 0.00 37.26 5.01
19 20 1.372087 GGAGCAAATGAGGAGGTGCG 61.372 60.000 0.00 0.00 41.90 5.34
20 21 1.372087 GAGCAAATGAGGAGGTGCGG 61.372 60.000 0.00 0.00 41.90 5.69
21 22 2.409870 GCAAATGAGGAGGTGCGGG 61.410 63.158 0.00 0.00 0.00 6.13
22 23 2.044946 AAATGAGGAGGTGCGGGC 60.045 61.111 0.00 0.00 0.00 6.13
23 24 3.976701 AAATGAGGAGGTGCGGGCG 62.977 63.158 0.00 0.00 0.00 6.13
53 54 1.296715 GCCTGGATATGGCGGTAGG 59.703 63.158 0.00 0.00 41.03 3.18
54 55 1.481056 GCCTGGATATGGCGGTAGGT 61.481 60.000 0.00 0.00 41.03 3.08
55 56 0.321671 CCTGGATATGGCGGTAGGTG 59.678 60.000 0.00 0.00 0.00 4.00
56 57 0.321671 CTGGATATGGCGGTAGGTGG 59.678 60.000 0.00 0.00 0.00 4.61
57 58 0.105401 TGGATATGGCGGTAGGTGGA 60.105 55.000 0.00 0.00 0.00 4.02
58 59 1.053424 GGATATGGCGGTAGGTGGAA 58.947 55.000 0.00 0.00 0.00 3.53
59 60 1.418637 GGATATGGCGGTAGGTGGAAA 59.581 52.381 0.00 0.00 0.00 3.13
60 61 2.039879 GGATATGGCGGTAGGTGGAAAT 59.960 50.000 0.00 0.00 0.00 2.17
61 62 2.922740 TATGGCGGTAGGTGGAAATC 57.077 50.000 0.00 0.00 0.00 2.17
62 63 0.179056 ATGGCGGTAGGTGGAAATCG 60.179 55.000 0.00 0.00 0.00 3.34
63 64 2.178235 GGCGGTAGGTGGAAATCGC 61.178 63.158 0.00 0.00 42.02 4.58
64 65 2.522638 GCGGTAGGTGGAAATCGCG 61.523 63.158 0.00 0.00 34.08 5.87
65 66 1.881252 CGGTAGGTGGAAATCGCGG 60.881 63.158 6.13 0.00 0.00 6.46
66 67 1.518774 GGTAGGTGGAAATCGCGGA 59.481 57.895 6.13 0.00 0.00 5.54
67 68 0.529992 GGTAGGTGGAAATCGCGGAG 60.530 60.000 6.13 0.00 0.00 4.63
68 69 0.175073 GTAGGTGGAAATCGCGGAGT 59.825 55.000 6.13 0.00 0.00 3.85
69 70 0.174845 TAGGTGGAAATCGCGGAGTG 59.825 55.000 6.13 0.00 40.84 3.51
70 71 1.375523 GGTGGAAATCGCGGAGTGT 60.376 57.895 6.13 0.00 40.08 3.55
71 72 1.635663 GGTGGAAATCGCGGAGTGTG 61.636 60.000 6.13 0.00 40.08 3.82
72 73 2.032634 TGGAAATCGCGGAGTGTGC 61.033 57.895 6.13 0.00 40.08 4.57
73 74 2.032634 GGAAATCGCGGAGTGTGCA 61.033 57.895 6.13 0.00 40.08 4.57
74 75 1.132640 GAAATCGCGGAGTGTGCAC 59.867 57.895 10.75 10.75 40.08 4.57
75 76 1.291877 GAAATCGCGGAGTGTGCACT 61.292 55.000 19.41 4.31 45.84 4.40
83 84 2.510948 GAGTGTGCACTCGAGTGTG 58.489 57.895 38.11 21.52 46.93 3.82
89 90 3.771491 CACTCGAGTGTGCAGCGC 61.771 66.667 32.77 0.00 40.96 5.92
109 110 4.404098 GGGAGCGGGCGAAGGAAA 62.404 66.667 0.00 0.00 0.00 3.13
110 111 2.124695 GGAGCGGGCGAAGGAAAT 60.125 61.111 0.00 0.00 0.00 2.17
111 112 1.145377 GGAGCGGGCGAAGGAAATA 59.855 57.895 0.00 0.00 0.00 1.40
112 113 0.463116 GGAGCGGGCGAAGGAAATAA 60.463 55.000 0.00 0.00 0.00 1.40
113 114 0.938008 GAGCGGGCGAAGGAAATAAG 59.062 55.000 0.00 0.00 0.00 1.73
114 115 0.539986 AGCGGGCGAAGGAAATAAGA 59.460 50.000 0.00 0.00 0.00 2.10
115 116 1.065709 AGCGGGCGAAGGAAATAAGAA 60.066 47.619 0.00 0.00 0.00 2.52
116 117 1.741145 GCGGGCGAAGGAAATAAGAAA 59.259 47.619 0.00 0.00 0.00 2.52
117 118 2.162809 GCGGGCGAAGGAAATAAGAAAA 59.837 45.455 0.00 0.00 0.00 2.29
118 119 3.366577 GCGGGCGAAGGAAATAAGAAAAA 60.367 43.478 0.00 0.00 0.00 1.94
140 141 6.575162 AAAGGGTATGTTGCTACTCTTTTG 57.425 37.500 3.50 0.00 45.72 2.44
141 142 5.499004 AGGGTATGTTGCTACTCTTTTGA 57.501 39.130 0.00 0.00 27.51 2.69
142 143 5.876357 AGGGTATGTTGCTACTCTTTTGAA 58.124 37.500 0.00 0.00 27.51 2.69
143 144 6.303839 AGGGTATGTTGCTACTCTTTTGAAA 58.696 36.000 0.00 0.00 27.51 2.69
144 145 6.431234 AGGGTATGTTGCTACTCTTTTGAAAG 59.569 38.462 0.00 0.00 37.36 2.62
145 146 6.430000 GGGTATGTTGCTACTCTTTTGAAAGA 59.570 38.462 6.07 6.07 42.41 2.52
146 147 7.040686 GGGTATGTTGCTACTCTTTTGAAAGAA 60.041 37.037 7.51 0.00 43.84 2.52
147 148 8.349983 GGTATGTTGCTACTCTTTTGAAAGAAA 58.650 33.333 7.51 0.00 43.84 2.52
148 149 9.730420 GTATGTTGCTACTCTTTTGAAAGAAAA 57.270 29.630 7.51 0.00 43.84 2.29
174 175 9.892130 AAAATAGGAATTCTCGAAGTAATGTCT 57.108 29.630 5.23 0.00 0.00 3.41
178 179 8.705048 AGGAATTCTCGAAGTAATGTCTAAAC 57.295 34.615 5.23 0.00 0.00 2.01
179 180 7.764901 AGGAATTCTCGAAGTAATGTCTAAACC 59.235 37.037 5.23 0.00 0.00 3.27
180 181 7.011202 GGAATTCTCGAAGTAATGTCTAAACCC 59.989 40.741 5.23 0.00 0.00 4.11
181 182 5.988310 TCTCGAAGTAATGTCTAAACCCA 57.012 39.130 0.00 0.00 0.00 4.51
182 183 6.349243 TCTCGAAGTAATGTCTAAACCCAA 57.651 37.500 0.00 0.00 0.00 4.12
183 184 6.395629 TCTCGAAGTAATGTCTAAACCCAAG 58.604 40.000 0.00 0.00 0.00 3.61
184 185 5.484715 TCGAAGTAATGTCTAAACCCAAGG 58.515 41.667 0.00 0.00 0.00 3.61
185 186 5.246656 TCGAAGTAATGTCTAAACCCAAGGA 59.753 40.000 0.00 0.00 0.00 3.36
186 187 6.070424 TCGAAGTAATGTCTAAACCCAAGGAT 60.070 38.462 0.00 0.00 0.00 3.24
187 188 6.598064 CGAAGTAATGTCTAAACCCAAGGATT 59.402 38.462 0.00 0.00 0.00 3.01
188 189 7.120726 CGAAGTAATGTCTAAACCCAAGGATTT 59.879 37.037 0.00 0.00 0.00 2.17
189 190 7.939784 AGTAATGTCTAAACCCAAGGATTTC 57.060 36.000 0.00 0.00 0.00 2.17
190 191 7.466804 AGTAATGTCTAAACCCAAGGATTTCA 58.533 34.615 0.00 0.00 0.00 2.69
191 192 6.590234 AATGTCTAAACCCAAGGATTTCAC 57.410 37.500 0.00 0.00 0.00 3.18
192 193 4.069304 TGTCTAAACCCAAGGATTTCACG 58.931 43.478 0.00 0.00 0.00 4.35
193 194 3.078837 TCTAAACCCAAGGATTTCACGC 58.921 45.455 0.00 0.00 0.00 5.34
194 195 1.698506 AAACCCAAGGATTTCACGCA 58.301 45.000 0.00 0.00 0.00 5.24
195 196 0.958822 AACCCAAGGATTTCACGCAC 59.041 50.000 0.00 0.00 0.00 5.34
196 197 1.234615 ACCCAAGGATTTCACGCACG 61.235 55.000 0.00 0.00 0.00 5.34
197 198 1.154225 CCAAGGATTTCACGCACGC 60.154 57.895 0.00 0.00 0.00 5.34
198 199 1.573932 CAAGGATTTCACGCACGCA 59.426 52.632 0.00 0.00 0.00 5.24
199 200 0.040514 CAAGGATTTCACGCACGCAA 60.041 50.000 0.00 0.00 0.00 4.85
200 201 0.881118 AAGGATTTCACGCACGCAAT 59.119 45.000 0.00 0.00 0.00 3.56
201 202 1.732941 AGGATTTCACGCACGCAATA 58.267 45.000 0.00 0.00 0.00 1.90
202 203 2.080693 AGGATTTCACGCACGCAATAA 58.919 42.857 0.00 0.00 0.00 1.40
203 204 2.095853 AGGATTTCACGCACGCAATAAG 59.904 45.455 0.00 0.00 0.00 1.73
204 205 1.840141 GATTTCACGCACGCAATAAGC 59.160 47.619 0.00 0.00 40.87 3.09
228 229 3.913573 CGATGCCGTTTCGCTCCG 61.914 66.667 0.00 0.00 0.00 4.63
229 230 4.223964 GATGCCGTTTCGCTCCGC 62.224 66.667 0.00 0.00 0.00 5.54
244 245 2.735478 CGCGCGTGGAACCACTTA 60.735 61.111 24.19 0.00 44.16 2.24
245 246 2.726691 CGCGCGTGGAACCACTTAG 61.727 63.158 24.19 12.25 44.16 2.18
246 247 2.388232 GCGCGTGGAACCACTTAGG 61.388 63.158 19.61 7.20 44.16 2.69
247 248 2.388232 CGCGTGGAACCACTTAGGC 61.388 63.158 19.61 14.55 44.16 3.93
248 249 2.038837 GCGTGGAACCACTTAGGCC 61.039 63.158 19.61 0.00 44.16 5.19
249 250 1.740296 CGTGGAACCACTTAGGCCG 60.740 63.158 19.61 3.37 44.16 6.13
250 251 1.373812 GTGGAACCACTTAGGCCGT 59.626 57.895 15.69 0.00 43.12 5.68
251 252 0.953960 GTGGAACCACTTAGGCCGTG 60.954 60.000 15.69 0.00 43.12 4.94
252 253 2.038837 GGAACCACTTAGGCCGTGC 61.039 63.158 0.00 0.00 43.14 5.34
253 254 2.358247 AACCACTTAGGCCGTGCG 60.358 61.111 0.00 0.00 43.14 5.34
275 276 3.442441 TTTTTGTGCCTCCGCTGG 58.558 55.556 0.00 0.00 35.36 4.85
276 277 1.152860 TTTTTGTGCCTCCGCTGGA 60.153 52.632 0.00 0.00 35.36 3.86
304 305 2.866750 CGGCTACGTGCATGCAAA 59.133 55.556 24.58 10.23 45.15 3.68
305 306 1.208870 CGGCTACGTGCATGCAAAA 59.791 52.632 24.58 9.84 45.15 2.44
306 307 0.386605 CGGCTACGTGCATGCAAAAA 60.387 50.000 24.58 9.45 45.15 1.94
325 326 4.361451 AAAATGCTATTCTTCCAGCGTG 57.639 40.909 0.00 0.00 40.79 5.34
326 327 2.988010 ATGCTATTCTTCCAGCGTGA 57.012 45.000 0.00 0.00 40.79 4.35
327 328 2.988010 TGCTATTCTTCCAGCGTGAT 57.012 45.000 0.00 0.00 40.79 3.06
328 329 2.554142 TGCTATTCTTCCAGCGTGATG 58.446 47.619 0.00 0.00 40.79 3.07
329 330 1.262683 GCTATTCTTCCAGCGTGATGC 59.737 52.381 0.00 0.00 46.98 3.91
339 340 3.955429 GCGTGATGCTAATATGGCG 57.045 52.632 0.00 0.00 41.73 5.69
340 341 0.179215 GCGTGATGCTAATATGGCGC 60.179 55.000 0.00 0.00 41.73 6.53
341 342 0.093535 CGTGATGCTAATATGGCGCG 59.906 55.000 0.00 0.00 0.00 6.86
342 343 0.179215 GTGATGCTAATATGGCGCGC 60.179 55.000 25.94 25.94 0.00 6.86
343 344 1.059369 GATGCTAATATGGCGCGCG 59.941 57.895 28.44 28.44 0.00 6.86
344 345 1.626654 GATGCTAATATGGCGCGCGT 61.627 55.000 32.35 18.83 0.00 6.01
345 346 1.900585 ATGCTAATATGGCGCGCGTG 61.901 55.000 32.35 16.86 0.00 5.34
346 347 2.594962 GCTAATATGGCGCGCGTGT 61.595 57.895 32.35 19.25 0.00 4.49
347 348 1.931551 CTAATATGGCGCGCGTGTT 59.068 52.632 32.35 21.44 0.00 3.32
348 349 0.383002 CTAATATGGCGCGCGTGTTG 60.383 55.000 32.35 11.19 0.00 3.33
349 350 1.767127 TAATATGGCGCGCGTGTTGG 61.767 55.000 32.35 1.79 0.00 3.77
350 351 4.743975 TATGGCGCGCGTGTTGGA 62.744 61.111 32.35 9.43 0.00 3.53
354 355 4.505217 GCGCGCGTGTTGGAGATG 62.505 66.667 32.35 0.00 0.00 2.90
355 356 4.505217 CGCGCGTGTTGGAGATGC 62.505 66.667 24.19 0.00 0.00 3.91
356 357 3.121030 GCGCGTGTTGGAGATGCT 61.121 61.111 8.43 0.00 0.00 3.79
357 358 3.084579 CGCGTGTTGGAGATGCTC 58.915 61.111 0.00 0.00 0.00 4.26
358 359 1.446792 CGCGTGTTGGAGATGCTCT 60.447 57.895 0.00 0.00 0.00 4.09
359 360 0.179137 CGCGTGTTGGAGATGCTCTA 60.179 55.000 0.00 0.00 0.00 2.43
360 361 1.735700 CGCGTGTTGGAGATGCTCTAA 60.736 52.381 0.00 0.00 0.00 2.10
361 362 1.929836 GCGTGTTGGAGATGCTCTAAG 59.070 52.381 0.00 0.00 31.92 2.18
362 363 2.544685 CGTGTTGGAGATGCTCTAAGG 58.455 52.381 0.00 0.00 31.92 2.69
363 364 2.284190 GTGTTGGAGATGCTCTAAGGC 58.716 52.381 0.00 0.00 31.92 4.35
364 365 1.210478 TGTTGGAGATGCTCTAAGGCC 59.790 52.381 0.00 0.00 31.92 5.19
365 366 1.488393 GTTGGAGATGCTCTAAGGCCT 59.512 52.381 0.00 0.00 31.92 5.19
366 367 1.885049 TGGAGATGCTCTAAGGCCTT 58.115 50.000 24.18 24.18 0.00 4.35
367 368 1.765314 TGGAGATGCTCTAAGGCCTTC 59.235 52.381 24.49 8.28 0.00 3.46
368 369 2.046292 GGAGATGCTCTAAGGCCTTCT 58.954 52.381 24.49 11.45 0.00 2.85
369 370 2.437651 GGAGATGCTCTAAGGCCTTCTT 59.562 50.000 24.49 5.58 39.40 2.52
370 371 3.118075 GGAGATGCTCTAAGGCCTTCTTT 60.118 47.826 24.49 0.00 36.93 2.52
371 372 3.876320 GAGATGCTCTAAGGCCTTCTTTG 59.124 47.826 24.49 12.01 36.93 2.77
372 373 2.496899 TGCTCTAAGGCCTTCTTTGG 57.503 50.000 24.49 10.14 36.93 3.28
373 374 1.705186 TGCTCTAAGGCCTTCTTTGGT 59.295 47.619 24.49 0.00 36.93 3.67
374 375 2.108250 TGCTCTAAGGCCTTCTTTGGTT 59.892 45.455 24.49 0.00 36.93 3.67
375 376 2.489722 GCTCTAAGGCCTTCTTTGGTTG 59.510 50.000 24.49 6.07 36.93 3.77
376 377 3.810743 GCTCTAAGGCCTTCTTTGGTTGA 60.811 47.826 24.49 1.40 36.93 3.18
377 378 4.593956 CTCTAAGGCCTTCTTTGGTTGAT 58.406 43.478 24.49 0.00 36.93 2.57
378 379 5.745227 CTCTAAGGCCTTCTTTGGTTGATA 58.255 41.667 24.49 0.00 36.93 2.15
379 380 5.745227 TCTAAGGCCTTCTTTGGTTGATAG 58.255 41.667 24.49 9.29 36.93 2.08
380 381 3.372440 AGGCCTTCTTTGGTTGATAGG 57.628 47.619 0.00 0.00 0.00 2.57
381 382 2.024941 AGGCCTTCTTTGGTTGATAGGG 60.025 50.000 0.00 0.00 0.00 3.53
382 383 2.291605 GGCCTTCTTTGGTTGATAGGGT 60.292 50.000 0.00 0.00 0.00 4.34
383 384 3.053917 GGCCTTCTTTGGTTGATAGGGTA 60.054 47.826 0.00 0.00 0.00 3.69
384 385 4.569015 GGCCTTCTTTGGTTGATAGGGTAA 60.569 45.833 0.00 0.00 0.00 2.85
385 386 4.640647 GCCTTCTTTGGTTGATAGGGTAAG 59.359 45.833 0.00 0.00 0.00 2.34
386 387 5.572885 GCCTTCTTTGGTTGATAGGGTAAGA 60.573 44.000 0.00 0.00 0.00 2.10
387 388 6.481643 CCTTCTTTGGTTGATAGGGTAAGAA 58.518 40.000 0.00 0.00 0.00 2.52
388 389 6.946009 CCTTCTTTGGTTGATAGGGTAAGAAA 59.054 38.462 0.00 0.00 31.92 2.52
389 390 7.450323 CCTTCTTTGGTTGATAGGGTAAGAAAA 59.550 37.037 0.00 0.00 31.92 2.29
390 391 8.950007 TTCTTTGGTTGATAGGGTAAGAAAAT 57.050 30.769 0.00 0.00 29.96 1.82
391 392 8.575649 TCTTTGGTTGATAGGGTAAGAAAATC 57.424 34.615 0.00 0.00 0.00 2.17
392 393 8.167392 TCTTTGGTTGATAGGGTAAGAAAATCA 58.833 33.333 0.00 0.00 0.00 2.57
393 394 8.893563 TTTGGTTGATAGGGTAAGAAAATCAT 57.106 30.769 0.00 0.00 0.00 2.45
394 395 9.983024 TTTGGTTGATAGGGTAAGAAAATCATA 57.017 29.630 0.00 0.00 0.00 2.15
395 396 9.983024 TTGGTTGATAGGGTAAGAAAATCATAA 57.017 29.630 0.00 0.00 0.00 1.90
396 397 9.627123 TGGTTGATAGGGTAAGAAAATCATAAG 57.373 33.333 0.00 0.00 0.00 1.73
397 398 9.847224 GGTTGATAGGGTAAGAAAATCATAAGA 57.153 33.333 0.00 0.00 0.00 2.10
403 404 8.855804 AGGGTAAGAAAATCATAAGAGTAGGA 57.144 34.615 0.00 0.00 0.00 2.94
404 405 9.280456 AGGGTAAGAAAATCATAAGAGTAGGAA 57.720 33.333 0.00 0.00 0.00 3.36
405 406 9.901172 GGGTAAGAAAATCATAAGAGTAGGAAA 57.099 33.333 0.00 0.00 0.00 3.13
426 427 9.690913 AGGAAAATCATAGAAAATGAGATGACA 57.309 29.630 0.00 0.00 31.41 3.58
429 430 9.745880 AAAATCATAGAAAATGAGATGACATGC 57.254 29.630 0.00 0.00 31.41 4.06
430 431 8.459911 AATCATAGAAAATGAGATGACATGCA 57.540 30.769 0.00 0.00 31.41 3.96
431 432 8.637196 ATCATAGAAAATGAGATGACATGCAT 57.363 30.769 0.00 0.00 40.77 3.96
432 433 8.459911 TCATAGAAAATGAGATGACATGCATT 57.540 30.769 0.00 0.00 37.34 3.56
433 434 8.909923 TCATAGAAAATGAGATGACATGCATTT 58.090 29.630 15.20 15.20 41.27 2.32
437 438 9.932207 AGAAAATGAGATGACATGCATTTTAAA 57.068 25.926 24.40 0.00 45.57 1.52
440 441 9.878667 AAATGAGATGACATGCATTTTAAATCA 57.121 25.926 15.20 0.00 37.60 2.57
464 465 9.883293 TCATATGAGTAGGAATAGGAAAAGAGA 57.117 33.333 0.00 0.00 0.00 3.10
465 466 9.921637 CATATGAGTAGGAATAGGAAAAGAGAC 57.078 37.037 0.00 0.00 0.00 3.36
466 467 6.452494 TGAGTAGGAATAGGAAAAGAGACG 57.548 41.667 0.00 0.00 0.00 4.18
467 468 5.950549 TGAGTAGGAATAGGAAAAGAGACGT 59.049 40.000 0.00 0.00 0.00 4.34
468 469 6.436532 TGAGTAGGAATAGGAAAAGAGACGTT 59.563 38.462 0.00 0.00 0.00 3.99
469 470 6.865411 AGTAGGAATAGGAAAAGAGACGTTC 58.135 40.000 0.00 0.00 0.00 3.95
470 471 6.664384 AGTAGGAATAGGAAAAGAGACGTTCT 59.336 38.462 0.00 0.00 37.93 3.01
472 473 7.477945 AGGAATAGGAAAAGAGACGTTCTTA 57.522 36.000 11.62 0.00 45.41 2.10
473 474 7.904205 AGGAATAGGAAAAGAGACGTTCTTAA 58.096 34.615 11.62 0.62 45.41 1.85
474 475 8.541234 AGGAATAGGAAAAGAGACGTTCTTAAT 58.459 33.333 11.62 6.13 45.41 1.40
475 476 9.163899 GGAATAGGAAAAGAGACGTTCTTAATT 57.836 33.333 11.62 5.67 45.41 1.40
477 478 6.707599 AGGAAAAGAGACGTTCTTAATTCG 57.292 37.500 11.62 0.00 45.41 3.34
478 479 5.120363 AGGAAAAGAGACGTTCTTAATTCGC 59.880 40.000 11.62 8.20 45.41 4.70
479 480 5.107220 GGAAAAGAGACGTTCTTAATTCGCA 60.107 40.000 11.62 0.00 45.41 5.10
480 481 6.402226 GGAAAAGAGACGTTCTTAATTCGCAT 60.402 38.462 11.62 0.00 45.41 4.73
481 482 5.704217 AAGAGACGTTCTTAATTCGCATC 57.296 39.130 10.11 0.00 44.32 3.91
482 483 4.744570 AGAGACGTTCTTAATTCGCATCA 58.255 39.130 0.00 0.00 29.61 3.07
483 484 5.352284 AGAGACGTTCTTAATTCGCATCAT 58.648 37.500 0.00 0.00 29.61 2.45
484 485 6.504398 AGAGACGTTCTTAATTCGCATCATA 58.496 36.000 0.00 0.00 29.61 2.15
485 486 6.638873 AGAGACGTTCTTAATTCGCATCATAG 59.361 38.462 0.00 0.00 29.61 2.23
486 487 5.692204 AGACGTTCTTAATTCGCATCATAGG 59.308 40.000 0.00 0.00 0.00 2.57
487 488 5.597806 ACGTTCTTAATTCGCATCATAGGA 58.402 37.500 0.00 0.00 0.00 2.94
488 489 6.223852 ACGTTCTTAATTCGCATCATAGGAT 58.776 36.000 0.00 0.00 0.00 3.24
489 490 6.706270 ACGTTCTTAATTCGCATCATAGGATT 59.294 34.615 0.00 0.00 0.00 3.01
490 491 7.226720 ACGTTCTTAATTCGCATCATAGGATTT 59.773 33.333 0.00 0.00 0.00 2.17
491 492 8.070171 CGTTCTTAATTCGCATCATAGGATTTT 58.930 33.333 0.00 0.00 0.00 1.82
492 493 9.736023 GTTCTTAATTCGCATCATAGGATTTTT 57.264 29.630 0.00 0.00 0.00 1.94
539 540 9.713684 ATTTATTTTCCTATGAAACATGGAGGA 57.286 29.630 0.00 0.00 40.12 3.71
540 541 9.713684 TTTATTTTCCTATGAAACATGGAGGAT 57.286 29.630 0.00 0.00 40.12 3.24
542 543 8.930846 ATTTTCCTATGAAACATGGAGGATAG 57.069 34.615 0.00 0.00 40.12 2.08
543 544 6.439636 TTCCTATGAAACATGGAGGATAGG 57.560 41.667 13.23 13.23 36.22 2.57
544 545 5.726560 TCCTATGAAACATGGAGGATAGGA 58.273 41.667 16.18 16.18 39.29 2.94
545 546 6.150332 TCCTATGAAACATGGAGGATAGGAA 58.850 40.000 17.15 7.00 38.86 3.36
546 547 6.270927 TCCTATGAAACATGGAGGATAGGAAG 59.729 42.308 17.15 0.89 38.86 3.46
547 548 6.270927 CCTATGAAACATGGAGGATAGGAAGA 59.729 42.308 13.83 0.00 36.16 2.87
548 549 6.581388 ATGAAACATGGAGGATAGGAAGAA 57.419 37.500 0.00 0.00 0.00 2.52
549 550 6.581388 TGAAACATGGAGGATAGGAAGAAT 57.419 37.500 0.00 0.00 0.00 2.40
550 551 6.973642 TGAAACATGGAGGATAGGAAGAATT 58.026 36.000 0.00 0.00 0.00 2.17
551 552 7.413446 TGAAACATGGAGGATAGGAAGAATTT 58.587 34.615 0.00 0.00 0.00 1.82
552 553 7.557719 TGAAACATGGAGGATAGGAAGAATTTC 59.442 37.037 0.00 0.00 0.00 2.17
553 554 6.838401 ACATGGAGGATAGGAAGAATTTCT 57.162 37.500 0.00 0.00 33.68 2.52
554 555 7.218314 ACATGGAGGATAGGAAGAATTTCTT 57.782 36.000 11.40 11.40 39.87 2.52
555 556 7.059156 ACATGGAGGATAGGAAGAATTTCTTG 58.941 38.462 16.17 0.98 36.73 3.02
556 557 6.891306 TGGAGGATAGGAAGAATTTCTTGA 57.109 37.500 16.17 2.44 36.73 3.02
557 558 7.457380 TGGAGGATAGGAAGAATTTCTTGAT 57.543 36.000 16.17 6.89 36.73 2.57
558 559 8.567198 TGGAGGATAGGAAGAATTTCTTGATA 57.433 34.615 16.17 8.89 36.73 2.15
559 560 8.654997 TGGAGGATAGGAAGAATTTCTTGATAG 58.345 37.037 16.17 0.00 36.73 2.08
560 561 8.100164 GGAGGATAGGAAGAATTTCTTGATAGG 58.900 40.741 16.17 0.00 36.73 2.57
561 562 8.805145 AGGATAGGAAGAATTTCTTGATAGGA 57.195 34.615 16.17 0.00 36.73 2.94
562 563 9.230477 AGGATAGGAAGAATTTCTTGATAGGAA 57.770 33.333 16.17 0.00 36.73 3.36
592 593 9.890915 AATTATATTCCTATAAACCAAAGGGCA 57.109 29.630 0.00 0.00 34.35 5.36
593 594 8.700439 TTATATTCCTATAAACCAAAGGGCAC 57.300 34.615 0.00 0.00 37.90 5.01
594 595 4.668138 TTCCTATAAACCAAAGGGCACT 57.332 40.909 0.00 0.00 37.90 4.40
595 596 5.782677 TTCCTATAAACCAAAGGGCACTA 57.217 39.130 0.00 0.00 37.90 2.74
596 597 5.782677 TCCTATAAACCAAAGGGCACTAA 57.217 39.130 0.00 0.00 37.90 2.24
597 598 6.142259 TCCTATAAACCAAAGGGCACTAAA 57.858 37.500 0.00 0.00 37.90 1.85
598 599 6.184789 TCCTATAAACCAAAGGGCACTAAAG 58.815 40.000 0.00 0.00 37.90 1.85
599 600 5.359860 CCTATAAACCAAAGGGCACTAAAGG 59.640 44.000 0.00 0.00 37.90 3.11
600 601 3.322191 AAACCAAAGGGCACTAAAGGA 57.678 42.857 8.14 0.00 37.90 3.36
601 602 3.322191 AACCAAAGGGCACTAAAGGAA 57.678 42.857 8.14 0.00 37.90 3.36
602 603 2.594131 ACCAAAGGGCACTAAAGGAAC 58.406 47.619 8.14 0.00 37.90 3.62
603 604 2.177016 ACCAAAGGGCACTAAAGGAACT 59.823 45.455 8.14 0.00 38.09 3.01
604 605 3.373767 ACCAAAGGGCACTAAAGGAACTT 60.374 43.478 8.14 0.00 46.32 2.66
652 653 8.243961 TGAAATTTCTACAAAATTCCTCCACA 57.756 30.769 18.64 0.00 32.41 4.17
653 654 8.141268 TGAAATTTCTACAAAATTCCTCCACAC 58.859 33.333 18.64 0.00 32.41 3.82
654 655 6.590234 ATTTCTACAAAATTCCTCCACACC 57.410 37.500 0.00 0.00 0.00 4.16
655 656 4.715534 TCTACAAAATTCCTCCACACCA 57.284 40.909 0.00 0.00 0.00 4.17
656 657 5.055265 TCTACAAAATTCCTCCACACCAA 57.945 39.130 0.00 0.00 0.00 3.67
657 658 5.450453 TCTACAAAATTCCTCCACACCAAA 58.550 37.500 0.00 0.00 0.00 3.28
658 659 4.670896 ACAAAATTCCTCCACACCAAAG 57.329 40.909 0.00 0.00 0.00 2.77
659 660 3.387699 ACAAAATTCCTCCACACCAAAGG 59.612 43.478 0.00 0.00 0.00 3.11
660 661 3.611025 AAATTCCTCCACACCAAAGGA 57.389 42.857 0.00 0.00 37.42 3.36
663 664 4.404691 CTCCACACCAAAGGAGGC 57.595 61.111 0.00 0.00 46.11 4.70
664 665 1.303643 CTCCACACCAAAGGAGGCC 60.304 63.158 0.00 0.00 46.11 5.19
665 666 1.774217 TCCACACCAAAGGAGGCCT 60.774 57.895 3.86 3.86 33.87 5.19
667 668 0.404040 CCACACCAAAGGAGGCCTTA 59.596 55.000 6.77 0.00 43.92 2.69
668 669 1.614317 CCACACCAAAGGAGGCCTTAG 60.614 57.143 6.77 0.00 43.92 2.18
669 670 0.698818 ACACCAAAGGAGGCCTTAGG 59.301 55.000 6.77 7.55 43.92 2.69
670 671 0.991920 CACCAAAGGAGGCCTTAGGA 59.008 55.000 6.77 0.00 43.92 2.94
671 672 1.065126 CACCAAAGGAGGCCTTAGGAG 60.065 57.143 6.77 0.00 43.92 3.69
672 673 1.290134 CCAAAGGAGGCCTTAGGAGT 58.710 55.000 6.77 0.00 43.92 3.85
673 674 1.065126 CCAAAGGAGGCCTTAGGAGTG 60.065 57.143 6.77 0.58 43.92 3.51
674 675 1.630878 CAAAGGAGGCCTTAGGAGTGT 59.369 52.381 6.77 0.00 43.92 3.55
675 676 2.040412 CAAAGGAGGCCTTAGGAGTGTT 59.960 50.000 6.77 0.00 43.92 3.32
676 677 2.046280 AGGAGGCCTTAGGAGTGTTT 57.954 50.000 6.77 0.00 0.00 2.83
677 678 2.349445 AGGAGGCCTTAGGAGTGTTTT 58.651 47.619 6.77 0.00 0.00 2.43
678 679 2.040412 AGGAGGCCTTAGGAGTGTTTTG 59.960 50.000 6.77 0.00 0.00 2.44
679 680 2.437413 GAGGCCTTAGGAGTGTTTTGG 58.563 52.381 6.77 0.00 0.00 3.28
680 681 1.075536 AGGCCTTAGGAGTGTTTTGGG 59.924 52.381 0.00 0.00 0.00 4.12
681 682 1.074889 GGCCTTAGGAGTGTTTTGGGA 59.925 52.381 0.69 0.00 0.00 4.37
682 683 2.160205 GCCTTAGGAGTGTTTTGGGAC 58.840 52.381 0.69 0.00 0.00 4.46
683 684 2.423577 CCTTAGGAGTGTTTTGGGACG 58.576 52.381 0.00 0.00 0.00 4.79
684 685 2.423577 CTTAGGAGTGTTTTGGGACGG 58.576 52.381 0.00 0.00 0.00 4.79
685 686 1.719529 TAGGAGTGTTTTGGGACGGA 58.280 50.000 0.00 0.00 0.00 4.69
686 687 0.396811 AGGAGTGTTTTGGGACGGAG 59.603 55.000 0.00 0.00 0.00 4.63
687 688 0.605589 GGAGTGTTTTGGGACGGAGG 60.606 60.000 0.00 0.00 0.00 4.30
688 689 0.605589 GAGTGTTTTGGGACGGAGGG 60.606 60.000 0.00 0.00 0.00 4.30
689 690 1.057851 AGTGTTTTGGGACGGAGGGA 61.058 55.000 0.00 0.00 0.00 4.20
690 691 0.605589 GTGTTTTGGGACGGAGGGAG 60.606 60.000 0.00 0.00 0.00 4.30
691 692 1.057851 TGTTTTGGGACGGAGGGAGT 61.058 55.000 0.00 0.00 0.00 3.85
692 693 0.605589 GTTTTGGGACGGAGGGAGTG 60.606 60.000 0.00 0.00 0.00 3.51
706 707 1.954382 GGGAGTGGTGTTTTGAGAACC 59.046 52.381 0.00 0.00 34.38 3.62
736 737 5.049680 CGATTCCCGTCAAAAGAGAAAGAAA 60.050 40.000 0.00 0.00 0.00 2.52
737 738 6.512741 CGATTCCCGTCAAAAGAGAAAGAAAA 60.513 38.462 0.00 0.00 0.00 2.29
745 746 8.883168 CGTCAAAAGAGAAAGAAAAATAGAACG 58.117 33.333 0.00 0.00 0.00 3.95
818 819 1.652012 CGAGCGAGTCTCCATCCTC 59.348 63.158 0.00 0.00 38.62 3.71
855 856 3.357079 CCAACAGACAGCCACCGC 61.357 66.667 0.00 0.00 0.00 5.68
985 987 3.079578 CGAATCTGTAGCCCCGTATCTA 58.920 50.000 0.00 0.00 0.00 1.98
1355 1622 3.332034 GGTTAGGTGCTGTGTAATTCGT 58.668 45.455 0.00 0.00 0.00 3.85
1483 1750 2.017783 GCGAGACGTGTTGCGGTTA 61.018 57.895 9.43 0.00 46.52 2.85
2046 2358 4.823790 ATATACCGAAAAACCGAATGGC 57.176 40.909 0.00 0.00 39.70 4.40
2610 2925 6.040842 TCCTTCATGATGTGATAGTTGATCGA 59.959 38.462 0.00 0.00 37.38 3.59
2940 3255 5.649395 CCAATCTAGTGCAAGAAAATCCTCA 59.351 40.000 0.00 0.00 0.00 3.86
3235 3551 5.476599 TGTTTGACATATGTTTGAGAAGGGG 59.523 40.000 10.30 0.00 0.00 4.79
3236 3552 5.512942 TTGACATATGTTTGAGAAGGGGA 57.487 39.130 10.30 0.00 0.00 4.81
3237 3553 5.102953 TGACATATGTTTGAGAAGGGGAG 57.897 43.478 10.30 0.00 0.00 4.30
3239 3555 3.217626 CATATGTTTGAGAAGGGGAGCC 58.782 50.000 0.00 0.00 0.00 4.70
3240 3556 1.376649 ATGTTTGAGAAGGGGAGCCT 58.623 50.000 0.00 0.00 0.00 4.58
3241 3557 1.149101 TGTTTGAGAAGGGGAGCCTT 58.851 50.000 0.00 0.00 0.00 4.35
3242 3558 2.344592 TGTTTGAGAAGGGGAGCCTTA 58.655 47.619 0.00 0.00 0.00 2.69
3243 3559 2.305927 TGTTTGAGAAGGGGAGCCTTAG 59.694 50.000 0.00 0.00 0.00 2.18
3244 3560 0.912486 TTGAGAAGGGGAGCCTTAGC 59.088 55.000 0.00 0.00 40.32 3.09
3245 3561 1.330655 TGAGAAGGGGAGCCTTAGCG 61.331 60.000 0.00 0.00 46.67 4.26
3246 3562 2.203084 GAAGGGGAGCCTTAGCGC 60.203 66.667 0.00 0.00 46.67 5.92
3247 3563 3.009115 AAGGGGAGCCTTAGCGCA 61.009 61.111 11.47 0.00 46.67 6.09
3248 3564 2.932130 GAAGGGGAGCCTTAGCGCAG 62.932 65.000 11.47 0.00 46.67 5.18
3249 3565 3.787001 GGGGAGCCTTAGCGCAGT 61.787 66.667 11.47 0.00 46.67 4.40
3250 3566 2.512515 GGGAGCCTTAGCGCAGTG 60.513 66.667 11.47 0.00 46.67 3.66
3251 3567 2.512515 GGAGCCTTAGCGCAGTGG 60.513 66.667 11.47 9.34 46.67 4.00
3252 3568 2.266055 GAGCCTTAGCGCAGTGGT 59.734 61.111 11.47 0.00 46.67 4.16
3253 3569 1.515954 GAGCCTTAGCGCAGTGGTA 59.484 57.895 11.47 0.00 46.67 3.25
3254 3570 0.108329 GAGCCTTAGCGCAGTGGTAA 60.108 55.000 11.47 5.53 46.67 2.85
3255 3571 0.323629 AGCCTTAGCGCAGTGGTAAA 59.676 50.000 11.47 0.00 46.67 2.01
3256 3572 0.727398 GCCTTAGCGCAGTGGTAAAG 59.273 55.000 11.47 2.53 39.86 1.85
3257 3573 0.727398 CCTTAGCGCAGTGGTAAAGC 59.273 55.000 11.47 0.00 39.86 3.51
3258 3574 1.676014 CCTTAGCGCAGTGGTAAAGCT 60.676 52.381 11.47 0.00 39.86 3.74
3259 3575 1.394917 CTTAGCGCAGTGGTAAAGCTG 59.605 52.381 11.47 0.00 39.86 4.24
3264 3580 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3265 3581 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3266 3582 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3267 3583 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3268 3584 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3269 3585 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3270 3586 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3271 3587 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3272 3588 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3273 3589 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3274 3590 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3275 3591 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3276 3592 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3277 3593 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3278 3594 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3288 3604 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3289 3605 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3290 3606 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3291 3607 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3292 3608 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3293 3609 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3294 3610 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3295 3611 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3296 3612 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3297 3613 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3298 3614 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3299 3615 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3300 3616 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3301 3617 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3302 3618 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3316 3632 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3317 3633 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3318 3634 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3319 3635 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3320 3636 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3321 3637 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3322 3638 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3323 3639 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3324 3640 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3325 3641 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3326 3642 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3327 3643 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3328 3644 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3329 3645 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3330 3646 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3331 3647 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3332 3648 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3333 3649 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3334 3650 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3335 3651 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3336 3652 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3337 3653 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3338 3654 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3339 3655 0.605589 AGGGAAAGGCTGCGTACAAC 60.606 55.000 0.00 0.00 0.00 3.32
3340 3656 0.887387 GGGAAAGGCTGCGTACAACA 60.887 55.000 0.00 0.00 0.00 3.33
3341 3657 0.517316 GGAAAGGCTGCGTACAACAG 59.483 55.000 8.24 8.24 38.22 3.16
3342 3658 1.508632 GAAAGGCTGCGTACAACAGA 58.491 50.000 15.26 0.00 37.32 3.41
3343 3659 1.194772 GAAAGGCTGCGTACAACAGAC 59.805 52.381 15.26 12.80 43.98 3.51
3344 3660 0.602905 AAGGCTGCGTACAACAGACC 60.603 55.000 13.74 13.72 44.80 3.85
3345 3661 2.033194 GGCTGCGTACAACAGACCC 61.033 63.158 15.26 5.68 37.18 4.46
3346 3662 1.301401 GCTGCGTACAACAGACCCA 60.301 57.895 15.26 0.00 37.32 4.51
3347 3663 0.882927 GCTGCGTACAACAGACCCAA 60.883 55.000 15.26 0.00 37.32 4.12
3348 3664 1.588674 CTGCGTACAACAGACCCAAA 58.411 50.000 7.01 0.00 37.32 3.28
3349 3665 1.531149 CTGCGTACAACAGACCCAAAG 59.469 52.381 7.01 0.00 37.32 2.77
3350 3666 1.134340 TGCGTACAACAGACCCAAAGT 60.134 47.619 0.00 0.00 0.00 2.66
3351 3667 1.263217 GCGTACAACAGACCCAAAGTG 59.737 52.381 0.00 0.00 0.00 3.16
3352 3668 1.871039 CGTACAACAGACCCAAAGTGG 59.129 52.381 0.00 0.00 37.25 4.00
3353 3669 2.743838 CGTACAACAGACCCAAAGTGGT 60.744 50.000 0.00 0.00 42.79 4.16
3358 3674 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3359 3675 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3360 3676 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3361 3677 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3362 3678 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3363 3679 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3364 3680 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3365 3681 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3366 3682 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3367 3683 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3368 3684 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3369 3685 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3370 3686 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3371 3687 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3372 3688 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3373 3689 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3374 3690 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3375 3691 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3376 3692 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3377 3693 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3398 3714 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3399 3715 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3400 3716 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3401 3717 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
3402 3718 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
3403 3719 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
3404 3720 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
3405 3721 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
3406 3722 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
3500 3816 7.833183 GGAGCTTTTGAATATCATCCAGGATAT 59.167 37.037 0.00 0.00 41.15 1.63
3550 3866 5.543507 TGTATGGTTTCAAAATGTGGCTT 57.456 34.783 0.00 0.00 0.00 4.35
3599 3915 5.334879 GGTGTATGCAAAGTGGAGTTAACAG 60.335 44.000 8.61 0.00 0.00 3.16
3688 4005 9.909644 TTAGAAGATAGCCTTAAATATGTCGAC 57.090 33.333 9.11 9.11 34.68 4.20
3693 4010 4.451900 AGCCTTAAATATGTCGACTTGGG 58.548 43.478 17.92 10.09 0.00 4.12
3699 4016 5.422214 AAATATGTCGACTTGGGTTCTCT 57.578 39.130 17.92 0.00 0.00 3.10
3736 4053 6.604735 ATCATTTAGTTTGTCATACCGAGC 57.395 37.500 0.00 0.00 0.00 5.03
3854 4171 7.501559 GCATATTCCATAGGCATGAAGTATGAT 59.498 37.037 0.00 0.00 41.78 2.45
3857 4174 4.598807 TCCATAGGCATGAAGTATGATGGT 59.401 41.667 0.00 0.00 38.70 3.55
3906 4223 4.039488 TCACCAAGCATCTCAAAAGCAATT 59.961 37.500 0.00 0.00 0.00 2.32
3907 4224 4.151689 CACCAAGCATCTCAAAAGCAATTG 59.848 41.667 0.00 0.00 0.00 2.32
3908 4225 4.202284 ACCAAGCATCTCAAAAGCAATTGT 60.202 37.500 7.40 0.00 0.00 2.71
4046 4364 8.539544 TCAACTTGATGATATGGAACTACAGAA 58.460 33.333 0.00 0.00 0.00 3.02
4073 4391 3.902465 GCTATATGCAAATCGCGTTTCTG 59.098 43.478 5.77 6.84 46.97 3.02
4089 4407 8.687301 TCGCGTTTCTGAATTTTTCTATTTTTC 58.313 29.630 5.77 0.00 0.00 2.29
4325 4643 6.885952 TTCAGGTAACGATTTGGAATTTCA 57.114 33.333 0.00 0.00 46.39 2.69
4352 4670 7.559486 ACTATGCTATTCAATGAAGTGTCTGA 58.441 34.615 1.10 0.00 0.00 3.27
4390 4708 7.909267 TCATTCATTCTTGTTGCTATCTAACG 58.091 34.615 0.00 0.00 0.00 3.18
4464 4782 4.471904 GTCATCTGGACATCCACACTTA 57.528 45.455 0.00 0.00 46.19 2.24
4468 4786 7.220030 GTCATCTGGACATCCACACTTATTAT 58.780 38.462 0.00 0.00 46.19 1.28
4629 4947 7.936847 TGTTCCATTCAGTCTAAAGTTACATGT 59.063 33.333 2.69 2.69 0.00 3.21
4937 5256 5.528043 TGTGACCATACATTTTGCTGTTT 57.472 34.783 0.00 0.00 0.00 2.83
4941 5260 2.667481 CCATACATTTTGCTGTTTGCCG 59.333 45.455 0.00 0.00 42.00 5.69
5074 5393 3.995199 TGTCGCAGAAGAGAACATTCTT 58.005 40.909 0.00 0.00 39.69 2.52
5338 5661 1.933853 GTTATGGTTCTGGCAGCTACG 59.066 52.381 10.34 0.00 0.00 3.51
5376 5699 0.807496 GATGAAGCACTCAGGTTGGC 59.193 55.000 0.00 0.00 38.24 4.52
5377 5700 0.111061 ATGAAGCACTCAGGTTGGCA 59.889 50.000 0.00 0.00 38.24 4.92
5454 5777 7.572523 TCAAAACTCTTGGCATAATATCTGG 57.427 36.000 0.00 0.00 0.00 3.86
5463 5786 8.217111 TCTTGGCATAATATCTGGATTTGTACA 58.783 33.333 0.00 0.00 0.00 2.90
5510 5833 5.359009 TGTTACTATTGGAGTTAGAGACCGG 59.641 44.000 0.00 0.00 39.81 5.28
5528 5851 2.678336 CCGGATTGGTTTCTAGAGTTGC 59.322 50.000 0.00 0.00 0.00 4.17
5552 5875 2.100916 TGCTATTGGAGTTAGAGACCGC 59.899 50.000 0.00 0.00 0.00 5.68
5557 5880 2.176045 TGGAGTTAGAGACCGCATTGA 58.824 47.619 0.00 0.00 0.00 2.57
5565 5888 4.744795 AGAGACCGCATTGATTTCTAGT 57.255 40.909 0.00 0.00 0.00 2.57
5585 5911 5.018539 AGTGTTGTGTTGCTGTTAGAGTA 57.981 39.130 0.00 0.00 0.00 2.59
5597 5923 4.261280 GCTGTTAGAGTAAGAGACCGGATC 60.261 50.000 9.46 5.78 31.22 3.36
5602 5928 3.816523 AGAGTAAGAGACCGGATCGATTC 59.183 47.826 9.46 0.00 0.00 2.52
5606 5932 1.957877 AGAGACCGGATCGATTCCTTC 59.042 52.381 9.46 0.00 42.99 3.46
5607 5933 1.681793 GAGACCGGATCGATTCCTTCA 59.318 52.381 9.46 0.00 42.99 3.02
5608 5934 1.409427 AGACCGGATCGATTCCTTCAC 59.591 52.381 9.46 0.00 42.99 3.18
5611 5937 2.236395 ACCGGATCGATTCCTTCACTTT 59.764 45.455 9.46 0.00 42.99 2.66
5668 5994 9.846738 GTGAAGCGTAGTACATATATCTATACG 57.153 37.037 0.38 10.01 37.99 3.06
5710 6042 2.098117 GGCAGATCCAAACAAATCTCGG 59.902 50.000 0.00 0.00 29.77 4.63
5816 6149 3.800929 TTATCGACGGCTACACTATCG 57.199 47.619 0.00 0.00 0.00 2.92
5818 6151 0.933097 TCGACGGCTACACTATCGAC 59.067 55.000 0.00 0.00 36.92 4.20
5905 6238 2.834267 TGCATCGCACGTACACATT 58.166 47.368 0.00 0.00 31.71 2.71
5937 6270 8.659491 GTTTCCTTCAAATAAGGCAAATGATTC 58.341 33.333 0.00 0.00 37.34 2.52
5951 6284 8.203485 AGGCAAATGATTCTTTTGTTTAGTTCA 58.797 29.630 20.02 0.00 36.63 3.18
5955 6288 9.768662 AAATGATTCTTTTGTTTAGTTCATGCT 57.231 25.926 0.00 0.00 0.00 3.79
5986 6319 1.292992 GTCGCCGTTTTATGGGGTAG 58.707 55.000 0.00 0.00 38.28 3.18
6019 6352 5.121454 CCTTGAGCATCTGTAACTTGAGTTC 59.879 44.000 0.00 0.00 36.25 3.01
6027 6360 7.571026 CATCTGTAACTTGAGTTCTGTTTCTG 58.429 38.462 0.00 0.00 39.31 3.02
6122 6456 6.829298 TGATTAATGTGCCGTTTCCCTATTTA 59.171 34.615 0.00 0.00 0.00 1.40
6147 6481 8.951787 ATATTGTCTACCGCAATAAACAGTTA 57.048 30.769 0.00 0.00 40.70 2.24
6204 6545 3.446873 TGCCAATTTGTTTGTCAGTCAGT 59.553 39.130 0.00 0.00 33.15 3.41
6307 6648 3.011517 ATTGGCTCAGGCGGAGGT 61.012 61.111 16.37 0.00 44.22 3.85
6336 6677 6.919775 AAGCGTATCTATATTCCACTTCCT 57.080 37.500 0.00 0.00 0.00 3.36
6481 6822 7.785028 AGGGATACTGTTCACTAATCATACTGA 59.215 37.037 0.00 0.00 0.00 3.41
6489 6830 9.755804 TGTTCACTAATCATACTGAATCATCTC 57.244 33.333 0.00 0.00 0.00 2.75
6539 6880 1.804601 GTGTTGCTTACTAACGCCCT 58.195 50.000 0.00 0.00 33.60 5.19
6573 6914 5.184479 TCAACAGGTAGCTACTGACGTTAAT 59.816 40.000 22.74 0.42 39.24 1.40
6795 7136 2.101582 GAGTGTGTCGCCCTCTGATATT 59.898 50.000 0.00 0.00 0.00 1.28
6801 7142 1.754803 TCGCCCTCTGATATTGAACGT 59.245 47.619 0.00 0.00 0.00 3.99
6857 7198 3.611025 AACCTTGGTTCCCATTGAAGA 57.389 42.857 0.00 0.00 32.37 2.87
6915 7256 9.566432 TTATTTGTGTTTTATTCCTGGCATTTT 57.434 25.926 0.00 0.00 0.00 1.82
7022 7363 2.104281 ACAAGAGGCAGACCGTAAACTT 59.896 45.455 0.00 0.00 42.76 2.66
7080 7422 3.964688 TGAGTTTCAGTGGTACTGGAAGA 59.035 43.478 8.91 0.00 43.89 2.87
7146 7488 3.928992 GCTATGTATGGACATGACCATCG 59.071 47.826 29.11 15.88 46.24 3.84
7166 7508 2.810274 CGCTGTATTTCCATCTCCCATG 59.190 50.000 0.00 0.00 0.00 3.66
7176 7518 4.722220 TCCATCTCCCATGCATTTTCTAG 58.278 43.478 0.00 0.00 0.00 2.43
7183 7525 6.156949 TCTCCCATGCATTTTCTAGTTACTCT 59.843 38.462 0.00 0.00 0.00 3.24
7201 7543 9.939802 AGTTACTCTACGGAATAATTTTGAAGT 57.060 29.630 0.00 0.00 0.00 3.01
7232 7575 3.234386 GCCTTTTACAGCGTCAATGTTC 58.766 45.455 0.00 0.00 32.02 3.18
7238 7581 1.536766 ACAGCGTCAATGTTCCATGTG 59.463 47.619 0.00 0.00 0.00 3.21
7246 7589 3.737172 GTTCCATGTGCGGCGCTT 61.737 61.111 33.26 14.96 0.00 4.68
7270 7613 1.858458 TGTTGAAGAAGTTGCGTCTCG 59.142 47.619 0.00 0.00 0.00 4.04
7280 7623 0.038892 TTGCGTCTCGAGTGGTTACC 60.039 55.000 13.13 0.00 0.00 2.85
7286 7629 0.974383 CTCGAGTGGTTACCCCTGTT 59.026 55.000 3.62 0.00 0.00 3.16
7358 7781 7.943447 TCTGGTATCATAACCTACTTCTCCTAC 59.057 40.741 0.00 0.00 40.44 3.18
7359 7782 7.008941 TGGTATCATAACCTACTTCTCCTACC 58.991 42.308 0.00 0.00 40.44 3.18
7360 7783 6.436847 GGTATCATAACCTACTTCTCCTACCC 59.563 46.154 0.00 0.00 36.53 3.69
7361 7784 5.745988 TCATAACCTACTTCTCCTACCCT 57.254 43.478 0.00 0.00 0.00 4.34
7362 7785 5.455872 TCATAACCTACTTCTCCTACCCTG 58.544 45.833 0.00 0.00 0.00 4.45
7363 7786 2.850695 ACCTACTTCTCCTACCCTGG 57.149 55.000 0.00 0.00 0.00 4.45
7364 7787 2.009165 ACCTACTTCTCCTACCCTGGT 58.991 52.381 0.00 0.00 0.00 4.00
7365 7788 3.204760 ACCTACTTCTCCTACCCTGGTA 58.795 50.000 0.00 0.00 0.00 3.25
7366 7789 3.798422 ACCTACTTCTCCTACCCTGGTAT 59.202 47.826 0.00 0.00 0.00 2.73
7367 7790 4.140971 ACCTACTTCTCCTACCCTGGTATC 60.141 50.000 0.00 0.00 0.00 2.24
7368 7791 4.140994 CCTACTTCTCCTACCCTGGTATCA 60.141 50.000 0.00 0.00 0.00 2.15
7369 7792 4.561254 ACTTCTCCTACCCTGGTATCAT 57.439 45.455 0.00 0.00 0.00 2.45
7370 7793 5.681494 ACTTCTCCTACCCTGGTATCATA 57.319 43.478 0.00 0.00 0.00 2.15
7371 7794 6.039415 ACTTCTCCTACCCTGGTATCATAA 57.961 41.667 0.00 0.00 0.00 1.90
7372 7795 5.839606 ACTTCTCCTACCCTGGTATCATAAC 59.160 44.000 0.00 0.00 0.00 1.89
7373 7796 4.748701 TCTCCTACCCTGGTATCATAACC 58.251 47.826 0.00 0.00 40.19 2.85
7374 7797 4.422592 TCTCCTACCCTGGTATCATAACCT 59.577 45.833 0.00 0.00 40.44 3.50
7375 7798 5.618284 TCTCCTACCCTGGTATCATAACCTA 59.382 44.000 0.00 0.00 40.44 3.08
7376 7799 5.648247 TCCTACCCTGGTATCATAACCTAC 58.352 45.833 0.00 0.00 40.44 3.18
7377 7800 5.377769 TCCTACCCTGGTATCATAACCTACT 59.622 44.000 0.00 0.00 40.44 2.57
7378 7801 6.082707 CCTACCCTGGTATCATAACCTACTT 58.917 44.000 0.00 0.00 40.44 2.24
7379 7802 6.210984 CCTACCCTGGTATCATAACCTACTTC 59.789 46.154 0.00 0.00 40.44 3.01
7380 7803 5.789535 ACCCTGGTATCATAACCTACTTCT 58.210 41.667 0.00 0.00 40.44 2.85
7381 7804 5.839606 ACCCTGGTATCATAACCTACTTCTC 59.160 44.000 0.00 0.00 40.44 2.87
7382 7805 5.246429 CCCTGGTATCATAACCTACTTCTCC 59.754 48.000 0.00 0.00 40.44 3.71
7383 7806 6.078664 CCTGGTATCATAACCTACTTCTCCT 58.921 44.000 0.00 0.00 40.44 3.69
7384 7807 7.239438 CCTGGTATCATAACCTACTTCTCCTA 58.761 42.308 0.00 0.00 40.44 2.94
7406 7829 8.491958 TCCTATCCTCAGAAAAATAAACCTACC 58.508 37.037 0.00 0.00 0.00 3.18
7414 7837 9.933723 TCAGAAAAATAAACCTACCTGTACTAC 57.066 33.333 0.00 0.00 0.00 2.73
7416 7839 7.547019 AGAAAAATAAACCTACCTGTACTACGC 59.453 37.037 0.00 0.00 0.00 4.42
7426 7849 4.387598 ACCTGTACTACGCGATCTAGATT 58.612 43.478 15.93 0.00 0.00 2.40
7474 8097 6.579666 ACCACTATACTACAACGACTTTGA 57.420 37.500 0.00 0.00 38.73 2.69
7490 8113 5.368256 ACTTTGATGTTGATTGTCAGAGC 57.632 39.130 0.00 0.00 29.84 4.09
7497 8120 4.973168 TGTTGATTGTCAGAGCCTTAGTT 58.027 39.130 0.00 0.00 0.00 2.24
7499 8122 5.239306 TGTTGATTGTCAGAGCCTTAGTTTG 59.761 40.000 0.00 0.00 0.00 2.93
7500 8123 5.227569 TGATTGTCAGAGCCTTAGTTTGA 57.772 39.130 0.00 0.00 0.00 2.69
7506 8129 7.187824 TGTCAGAGCCTTAGTTTGATAATCT 57.812 36.000 0.00 0.00 0.00 2.40
7551 8176 1.394917 CATGTTGAACTCGCCAGCTAC 59.605 52.381 0.00 0.00 0.00 3.58
7564 8189 1.967066 CCAGCTACAGGACCATAGGAG 59.033 57.143 0.00 0.00 0.00 3.69
7632 8263 1.507141 GGCTTTGTACTGCACACGCT 61.507 55.000 0.00 0.00 36.69 5.07
7654 8285 6.032775 CGCTCAAGTGTATAAATTTGTTGCAG 59.967 38.462 0.00 2.12 0.00 4.41
7658 8289 4.772100 AGTGTATAAATTTGTTGCAGCCCT 59.228 37.500 0.00 0.00 0.00 5.19
7665 8296 0.665835 TTGTTGCAGCCCTTTGTACG 59.334 50.000 0.00 0.00 0.00 3.67
7718 8349 1.589803 ACAGTTACCGAGCCAAACAC 58.410 50.000 0.00 0.00 0.00 3.32
7733 8364 0.752054 AACACCACCACCATGCTTTG 59.248 50.000 0.00 0.00 0.00 2.77
7734 8365 0.396974 ACACCACCACCATGCTTTGT 60.397 50.000 0.00 0.00 0.00 2.83
7735 8366 1.133637 ACACCACCACCATGCTTTGTA 60.134 47.619 0.00 0.00 0.00 2.41
7736 8367 1.541147 CACCACCACCATGCTTTGTAG 59.459 52.381 0.00 0.00 0.00 2.74
7737 8368 1.423541 ACCACCACCATGCTTTGTAGA 59.576 47.619 0.00 0.00 0.00 2.59
7797 8428 1.969923 CCCCAGGAAACAATGCTTCAA 59.030 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.372087 CGCACCTCCTCATTTGCTCC 61.372 60.000 0.00 0.00 32.56 4.70
1 2 1.372087 CCGCACCTCCTCATTTGCTC 61.372 60.000 0.00 0.00 32.56 4.26
2 3 1.377725 CCGCACCTCCTCATTTGCT 60.378 57.895 0.00 0.00 32.56 3.91
3 4 2.409870 CCCGCACCTCCTCATTTGC 61.410 63.158 0.00 0.00 0.00 3.68
4 5 2.409870 GCCCGCACCTCCTCATTTG 61.410 63.158 0.00 0.00 0.00 2.32
5 6 2.044946 GCCCGCACCTCCTCATTT 60.045 61.111 0.00 0.00 0.00 2.32
6 7 4.473520 CGCCCGCACCTCCTCATT 62.474 66.667 0.00 0.00 0.00 2.57
36 37 0.321671 CACCTACCGCCATATCCAGG 59.678 60.000 0.00 0.00 0.00 4.45
37 38 0.321671 CCACCTACCGCCATATCCAG 59.678 60.000 0.00 0.00 0.00 3.86
38 39 0.105401 TCCACCTACCGCCATATCCA 60.105 55.000 0.00 0.00 0.00 3.41
39 40 1.053424 TTCCACCTACCGCCATATCC 58.947 55.000 0.00 0.00 0.00 2.59
40 41 2.922740 TTTCCACCTACCGCCATATC 57.077 50.000 0.00 0.00 0.00 1.63
41 42 2.289444 CGATTTCCACCTACCGCCATAT 60.289 50.000 0.00 0.00 0.00 1.78
42 43 1.069513 CGATTTCCACCTACCGCCATA 59.930 52.381 0.00 0.00 0.00 2.74
43 44 0.179056 CGATTTCCACCTACCGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
44 45 1.219664 CGATTTCCACCTACCGCCA 59.780 57.895 0.00 0.00 0.00 5.69
45 46 2.178235 GCGATTTCCACCTACCGCC 61.178 63.158 0.00 0.00 37.09 6.13
46 47 2.522638 CGCGATTTCCACCTACCGC 61.523 63.158 0.00 0.00 39.33 5.68
47 48 1.881252 CCGCGATTTCCACCTACCG 60.881 63.158 8.23 0.00 0.00 4.02
48 49 0.529992 CTCCGCGATTTCCACCTACC 60.530 60.000 8.23 0.00 0.00 3.18
49 50 0.175073 ACTCCGCGATTTCCACCTAC 59.825 55.000 8.23 0.00 0.00 3.18
50 51 0.174845 CACTCCGCGATTTCCACCTA 59.825 55.000 8.23 0.00 0.00 3.08
51 52 1.079127 CACTCCGCGATTTCCACCT 60.079 57.895 8.23 0.00 0.00 4.00
52 53 1.375523 ACACTCCGCGATTTCCACC 60.376 57.895 8.23 0.00 0.00 4.61
53 54 1.787847 CACACTCCGCGATTTCCAC 59.212 57.895 8.23 0.00 0.00 4.02
54 55 2.032634 GCACACTCCGCGATTTCCA 61.033 57.895 8.23 0.00 0.00 3.53
55 56 2.032634 TGCACACTCCGCGATTTCC 61.033 57.895 8.23 0.00 0.00 3.13
56 57 1.132640 GTGCACACTCCGCGATTTC 59.867 57.895 13.17 0.00 0.00 2.17
57 58 1.301716 AGTGCACACTCCGCGATTT 60.302 52.632 21.04 0.00 36.92 2.17
58 59 2.343758 AGTGCACACTCCGCGATT 59.656 55.556 21.04 0.00 36.92 3.34
92 93 2.319890 TATTTCCTTCGCCCGCTCCC 62.320 60.000 0.00 0.00 0.00 4.30
93 94 0.463116 TTATTTCCTTCGCCCGCTCC 60.463 55.000 0.00 0.00 0.00 4.70
94 95 0.938008 CTTATTTCCTTCGCCCGCTC 59.062 55.000 0.00 0.00 0.00 5.03
95 96 0.539986 TCTTATTTCCTTCGCCCGCT 59.460 50.000 0.00 0.00 0.00 5.52
96 97 1.375551 TTCTTATTTCCTTCGCCCGC 58.624 50.000 0.00 0.00 0.00 6.13
97 98 4.428615 TTTTTCTTATTTCCTTCGCCCG 57.571 40.909 0.00 0.00 0.00 6.13
115 116 7.286775 TCAAAAGAGTAGCAACATACCCTTTTT 59.713 33.333 4.11 0.00 39.33 1.94
116 117 6.775629 TCAAAAGAGTAGCAACATACCCTTTT 59.224 34.615 0.00 0.00 41.55 2.27
117 118 6.303839 TCAAAAGAGTAGCAACATACCCTTT 58.696 36.000 0.00 0.00 35.84 3.11
118 119 5.876357 TCAAAAGAGTAGCAACATACCCTT 58.124 37.500 0.00 0.00 0.00 3.95
119 120 5.499004 TCAAAAGAGTAGCAACATACCCT 57.501 39.130 0.00 0.00 0.00 4.34
120 121 6.430000 TCTTTCAAAAGAGTAGCAACATACCC 59.570 38.462 1.06 0.00 39.95 3.69
121 122 7.435068 TCTTTCAAAAGAGTAGCAACATACC 57.565 36.000 1.06 0.00 39.95 2.73
122 123 9.730420 TTTTCTTTCAAAAGAGTAGCAACATAC 57.270 29.630 5.42 0.00 45.01 2.39
148 149 9.892130 AGACATTACTTCGAGAATTCCTATTTT 57.108 29.630 0.65 0.00 0.00 1.82
152 153 9.798994 GTTTAGACATTACTTCGAGAATTCCTA 57.201 33.333 0.65 0.00 0.00 2.94
153 154 7.764901 GGTTTAGACATTACTTCGAGAATTCCT 59.235 37.037 0.65 0.00 0.00 3.36
154 155 7.011202 GGGTTTAGACATTACTTCGAGAATTCC 59.989 40.741 0.65 0.00 0.00 3.01
155 156 7.548075 TGGGTTTAGACATTACTTCGAGAATTC 59.452 37.037 0.00 0.00 0.00 2.17
156 157 7.391620 TGGGTTTAGACATTACTTCGAGAATT 58.608 34.615 0.00 0.00 0.00 2.17
157 158 6.942976 TGGGTTTAGACATTACTTCGAGAAT 58.057 36.000 0.00 0.00 0.00 2.40
158 159 6.349243 TGGGTTTAGACATTACTTCGAGAA 57.651 37.500 0.00 0.00 0.00 2.87
159 160 5.988310 TGGGTTTAGACATTACTTCGAGA 57.012 39.130 0.00 0.00 0.00 4.04
160 161 5.581085 CCTTGGGTTTAGACATTACTTCGAG 59.419 44.000 0.00 0.00 0.00 4.04
161 162 5.246656 TCCTTGGGTTTAGACATTACTTCGA 59.753 40.000 0.00 0.00 0.00 3.71
162 163 5.484715 TCCTTGGGTTTAGACATTACTTCG 58.515 41.667 0.00 0.00 0.00 3.79
163 164 7.939784 AATCCTTGGGTTTAGACATTACTTC 57.060 36.000 0.00 0.00 0.00 3.01
164 165 7.947890 TGAAATCCTTGGGTTTAGACATTACTT 59.052 33.333 0.00 0.00 0.00 2.24
165 166 7.393515 GTGAAATCCTTGGGTTTAGACATTACT 59.606 37.037 0.00 0.00 0.00 2.24
166 167 7.535997 GTGAAATCCTTGGGTTTAGACATTAC 58.464 38.462 0.00 0.00 0.00 1.89
167 168 6.373216 CGTGAAATCCTTGGGTTTAGACATTA 59.627 38.462 0.00 0.00 0.00 1.90
168 169 5.183140 CGTGAAATCCTTGGGTTTAGACATT 59.817 40.000 0.00 0.00 0.00 2.71
169 170 4.700213 CGTGAAATCCTTGGGTTTAGACAT 59.300 41.667 0.00 0.00 0.00 3.06
170 171 4.069304 CGTGAAATCCTTGGGTTTAGACA 58.931 43.478 0.00 0.00 0.00 3.41
171 172 3.119955 GCGTGAAATCCTTGGGTTTAGAC 60.120 47.826 0.00 0.00 0.00 2.59
172 173 3.078837 GCGTGAAATCCTTGGGTTTAGA 58.921 45.455 0.00 0.00 0.00 2.10
173 174 2.817258 TGCGTGAAATCCTTGGGTTTAG 59.183 45.455 0.00 0.00 0.00 1.85
174 175 2.554893 GTGCGTGAAATCCTTGGGTTTA 59.445 45.455 0.00 0.00 0.00 2.01
175 176 1.339929 GTGCGTGAAATCCTTGGGTTT 59.660 47.619 0.00 0.00 0.00 3.27
176 177 0.958822 GTGCGTGAAATCCTTGGGTT 59.041 50.000 0.00 0.00 0.00 4.11
177 178 1.234615 CGTGCGTGAAATCCTTGGGT 61.235 55.000 0.00 0.00 0.00 4.51
178 179 1.501741 CGTGCGTGAAATCCTTGGG 59.498 57.895 0.00 0.00 0.00 4.12
179 180 1.154225 GCGTGCGTGAAATCCTTGG 60.154 57.895 0.00 0.00 0.00 3.61
180 181 0.040514 TTGCGTGCGTGAAATCCTTG 60.041 50.000 0.00 0.00 0.00 3.61
181 182 0.881118 ATTGCGTGCGTGAAATCCTT 59.119 45.000 0.00 0.00 0.00 3.36
182 183 1.732941 TATTGCGTGCGTGAAATCCT 58.267 45.000 0.00 0.00 0.00 3.24
183 184 2.440501 CTTATTGCGTGCGTGAAATCC 58.559 47.619 0.00 0.00 0.00 3.01
184 185 1.840141 GCTTATTGCGTGCGTGAAATC 59.160 47.619 0.00 0.00 0.00 2.17
185 186 1.895051 GCTTATTGCGTGCGTGAAAT 58.105 45.000 0.00 0.00 0.00 2.17
186 187 3.376347 GCTTATTGCGTGCGTGAAA 57.624 47.368 0.00 0.00 0.00 2.69
196 197 3.168237 ATCGTGCGCCGCTTATTGC 62.168 57.895 11.67 0.00 36.19 3.56
197 198 1.368019 CATCGTGCGCCGCTTATTG 60.368 57.895 11.67 0.00 36.19 1.90
198 199 3.014036 CATCGTGCGCCGCTTATT 58.986 55.556 11.67 0.00 36.19 1.40
199 200 3.640000 GCATCGTGCGCCGCTTAT 61.640 61.111 11.67 0.00 36.19 1.73
211 212 3.913573 CGGAGCGAAACGGCATCG 61.914 66.667 2.88 2.88 42.99 3.84
227 228 2.726691 CTAAGTGGTTCCACGCGCG 61.727 63.158 30.96 30.96 41.41 6.86
228 229 2.388232 CCTAAGTGGTTCCACGCGC 61.388 63.158 5.73 0.00 41.41 6.86
229 230 2.388232 GCCTAAGTGGTTCCACGCG 61.388 63.158 15.07 3.53 41.41 6.01
230 231 2.038837 GGCCTAAGTGGTTCCACGC 61.039 63.158 15.07 12.22 41.41 5.34
231 232 1.740296 CGGCCTAAGTGGTTCCACG 60.740 63.158 15.07 3.76 41.41 4.94
232 233 0.953960 CACGGCCTAAGTGGTTCCAC 60.954 60.000 13.45 13.45 38.35 4.02
233 234 1.373435 CACGGCCTAAGTGGTTCCA 59.627 57.895 0.00 0.00 38.35 3.53
234 235 2.038837 GCACGGCCTAAGTGGTTCC 61.039 63.158 10.75 0.00 39.80 3.62
235 236 2.388232 CGCACGGCCTAAGTGGTTC 61.388 63.158 10.75 0.00 39.80 3.62
236 237 2.358247 CGCACGGCCTAAGTGGTT 60.358 61.111 10.75 0.00 39.80 3.67
258 259 1.152860 TCCAGCGGAGGCACAAAAA 60.153 52.632 0.00 0.00 43.41 1.94
259 260 1.600636 CTCCAGCGGAGGCACAAAA 60.601 57.895 14.53 0.00 45.43 2.44
260 261 2.032528 CTCCAGCGGAGGCACAAA 59.967 61.111 14.53 0.00 45.43 2.83
272 273 4.760047 CCGTTCCGGGTGCTCCAG 62.760 72.222 0.00 2.14 44.15 3.86
287 288 0.386605 TTTTTGCATGCACGTAGCCG 60.387 50.000 22.58 1.27 44.83 5.52
288 289 3.488048 TTTTTGCATGCACGTAGCC 57.512 47.368 22.58 0.00 44.83 3.93
303 304 4.458989 TCACGCTGGAAGAATAGCATTTTT 59.541 37.500 0.00 0.00 39.87 1.94
304 305 4.009675 TCACGCTGGAAGAATAGCATTTT 58.990 39.130 0.00 0.00 39.87 1.82
305 306 3.609853 TCACGCTGGAAGAATAGCATTT 58.390 40.909 0.00 0.00 39.87 2.32
306 307 3.266510 TCACGCTGGAAGAATAGCATT 57.733 42.857 0.00 0.00 39.87 3.56
307 308 2.988010 TCACGCTGGAAGAATAGCAT 57.012 45.000 0.00 0.00 39.87 3.79
308 309 2.554142 CATCACGCTGGAAGAATAGCA 58.446 47.619 0.00 0.00 39.87 3.49
309 310 1.262683 GCATCACGCTGGAAGAATAGC 59.737 52.381 0.00 0.00 37.77 2.97
321 322 0.179215 GCGCCATATTAGCATCACGC 60.179 55.000 0.00 0.00 42.91 5.34
322 323 0.093535 CGCGCCATATTAGCATCACG 59.906 55.000 0.00 0.00 0.00 4.35
323 324 0.179215 GCGCGCCATATTAGCATCAC 60.179 55.000 23.24 0.00 0.00 3.06
324 325 1.625759 CGCGCGCCATATTAGCATCA 61.626 55.000 27.72 0.00 0.00 3.07
325 326 1.059369 CGCGCGCCATATTAGCATC 59.941 57.895 27.72 0.00 0.00 3.91
326 327 1.667830 ACGCGCGCCATATTAGCAT 60.668 52.632 32.58 1.63 0.00 3.79
327 328 2.279851 ACGCGCGCCATATTAGCA 60.280 55.556 32.58 0.00 0.00 3.49
328 329 2.101209 AACACGCGCGCCATATTAGC 62.101 55.000 32.58 0.00 0.00 3.09
329 330 0.383002 CAACACGCGCGCCATATTAG 60.383 55.000 32.58 12.27 0.00 1.73
330 331 1.639000 CAACACGCGCGCCATATTA 59.361 52.632 32.58 0.00 0.00 0.98
331 332 2.403186 CAACACGCGCGCCATATT 59.597 55.556 32.58 14.18 0.00 1.28
332 333 3.572539 CCAACACGCGCGCCATAT 61.573 61.111 32.58 6.94 0.00 1.78
333 334 4.743975 TCCAACACGCGCGCCATA 62.744 61.111 32.58 8.00 0.00 2.74
337 338 4.505217 CATCTCCAACACGCGCGC 62.505 66.667 32.58 23.91 0.00 6.86
338 339 4.505217 GCATCTCCAACACGCGCG 62.505 66.667 30.96 30.96 0.00 6.86
339 340 3.088500 GAGCATCTCCAACACGCGC 62.089 63.158 5.73 0.00 0.00 6.86
340 341 3.084579 GAGCATCTCCAACACGCG 58.915 61.111 3.53 3.53 0.00 6.01
351 352 2.948315 CCAAAGAAGGCCTTAGAGCATC 59.052 50.000 20.54 3.72 34.00 3.91
352 353 2.310052 ACCAAAGAAGGCCTTAGAGCAT 59.690 45.455 20.54 0.00 34.00 3.79
353 354 1.705186 ACCAAAGAAGGCCTTAGAGCA 59.295 47.619 20.54 0.00 34.00 4.26
354 355 2.489722 CAACCAAAGAAGGCCTTAGAGC 59.510 50.000 20.54 5.80 34.00 4.09
355 356 4.021102 TCAACCAAAGAAGGCCTTAGAG 57.979 45.455 20.54 8.82 34.00 2.43
356 357 4.657814 ATCAACCAAAGAAGGCCTTAGA 57.342 40.909 20.54 6.88 34.00 2.10
357 358 4.884164 CCTATCAACCAAAGAAGGCCTTAG 59.116 45.833 20.54 7.26 34.00 2.18
358 359 4.325030 CCCTATCAACCAAAGAAGGCCTTA 60.325 45.833 20.54 0.00 34.00 2.69
359 360 3.564352 CCCTATCAACCAAAGAAGGCCTT 60.564 47.826 20.65 20.65 36.47 4.35
360 361 2.024941 CCCTATCAACCAAAGAAGGCCT 60.025 50.000 0.00 0.00 0.00 5.19
361 362 2.291605 ACCCTATCAACCAAAGAAGGCC 60.292 50.000 0.00 0.00 0.00 5.19
362 363 3.087370 ACCCTATCAACCAAAGAAGGC 57.913 47.619 0.00 0.00 0.00 4.35
363 364 6.062258 TCTTACCCTATCAACCAAAGAAGG 57.938 41.667 0.00 0.00 0.00 3.46
364 365 7.996098 TTTCTTACCCTATCAACCAAAGAAG 57.004 36.000 0.00 0.00 34.17 2.85
365 366 8.950007 ATTTTCTTACCCTATCAACCAAAGAA 57.050 30.769 0.00 0.00 31.58 2.52
366 367 8.167392 TGATTTTCTTACCCTATCAACCAAAGA 58.833 33.333 0.00 0.00 0.00 2.52
367 368 8.348285 TGATTTTCTTACCCTATCAACCAAAG 57.652 34.615 0.00 0.00 0.00 2.77
368 369 8.893563 ATGATTTTCTTACCCTATCAACCAAA 57.106 30.769 0.00 0.00 0.00 3.28
369 370 9.983024 TTATGATTTTCTTACCCTATCAACCAA 57.017 29.630 0.00 0.00 0.00 3.67
370 371 9.627123 CTTATGATTTTCTTACCCTATCAACCA 57.373 33.333 0.00 0.00 0.00 3.67
371 372 9.847224 TCTTATGATTTTCTTACCCTATCAACC 57.153 33.333 0.00 0.00 0.00 3.77
377 378 9.947189 TCCTACTCTTATGATTTTCTTACCCTA 57.053 33.333 0.00 0.00 0.00 3.53
378 379 8.855804 TCCTACTCTTATGATTTTCTTACCCT 57.144 34.615 0.00 0.00 0.00 4.34
379 380 9.901172 TTTCCTACTCTTATGATTTTCTTACCC 57.099 33.333 0.00 0.00 0.00 3.69
400 401 9.690913 TGTCATCTCATTTTCTATGATTTTCCT 57.309 29.630 0.00 0.00 31.49 3.36
403 404 9.745880 GCATGTCATCTCATTTTCTATGATTTT 57.254 29.630 0.00 0.00 31.49 1.82
404 405 8.909923 TGCATGTCATCTCATTTTCTATGATTT 58.090 29.630 0.00 0.00 31.49 2.17
405 406 8.459911 TGCATGTCATCTCATTTTCTATGATT 57.540 30.769 0.00 0.00 31.49 2.57
406 407 8.637196 ATGCATGTCATCTCATTTTCTATGAT 57.363 30.769 0.00 0.00 31.49 2.45
407 408 8.459911 AATGCATGTCATCTCATTTTCTATGA 57.540 30.769 0.00 0.00 33.40 2.15
408 409 9.529325 AAAATGCATGTCATCTCATTTTCTATG 57.471 29.630 19.65 0.00 42.18 2.23
411 412 9.932207 TTTAAAATGCATGTCATCTCATTTTCT 57.068 25.926 24.40 13.72 43.71 2.52
414 415 9.878667 TGATTTAAAATGCATGTCATCTCATTT 57.121 25.926 0.00 13.11 39.85 2.32
438 439 9.883293 TCTCTTTTCCTATTCCTACTCATATGA 57.117 33.333 5.07 5.07 0.00 2.15
439 440 9.921637 GTCTCTTTTCCTATTCCTACTCATATG 57.078 37.037 0.00 0.00 0.00 1.78
440 441 8.798402 CGTCTCTTTTCCTATTCCTACTCATAT 58.202 37.037 0.00 0.00 0.00 1.78
441 442 7.778853 ACGTCTCTTTTCCTATTCCTACTCATA 59.221 37.037 0.00 0.00 0.00 2.15
442 443 6.608002 ACGTCTCTTTTCCTATTCCTACTCAT 59.392 38.462 0.00 0.00 0.00 2.90
443 444 5.950549 ACGTCTCTTTTCCTATTCCTACTCA 59.049 40.000 0.00 0.00 0.00 3.41
444 445 6.453926 ACGTCTCTTTTCCTATTCCTACTC 57.546 41.667 0.00 0.00 0.00 2.59
445 446 6.664384 AGAACGTCTCTTTTCCTATTCCTACT 59.336 38.462 0.00 0.00 0.00 2.57
446 447 6.865411 AGAACGTCTCTTTTCCTATTCCTAC 58.135 40.000 0.00 0.00 0.00 3.18
447 448 7.477945 AAGAACGTCTCTTTTCCTATTCCTA 57.522 36.000 7.04 0.00 41.97 2.94
448 449 6.361768 AAGAACGTCTCTTTTCCTATTCCT 57.638 37.500 7.04 0.00 41.97 3.36
449 450 8.719560 ATTAAGAACGTCTCTTTTCCTATTCC 57.280 34.615 15.04 0.00 41.97 3.01
451 452 8.870879 CGAATTAAGAACGTCTCTTTTCCTATT 58.129 33.333 15.04 9.34 41.97 1.73
452 453 7.010275 GCGAATTAAGAACGTCTCTTTTCCTAT 59.990 37.037 15.04 3.78 41.97 2.57
453 454 6.309737 GCGAATTAAGAACGTCTCTTTTCCTA 59.690 38.462 15.04 0.00 41.97 2.94
454 455 5.120363 GCGAATTAAGAACGTCTCTTTTCCT 59.880 40.000 15.04 2.84 41.97 3.36
455 456 5.107220 TGCGAATTAAGAACGTCTCTTTTCC 60.107 40.000 15.04 9.90 41.97 3.13
456 457 5.912528 TGCGAATTAAGAACGTCTCTTTTC 58.087 37.500 15.04 12.82 41.97 2.29
457 458 5.917541 TGCGAATTAAGAACGTCTCTTTT 57.082 34.783 15.04 7.38 41.97 2.27
458 459 5.637810 TGATGCGAATTAAGAACGTCTCTTT 59.362 36.000 15.04 2.12 41.97 2.52
459 460 5.168569 TGATGCGAATTAAGAACGTCTCTT 58.831 37.500 14.48 14.48 46.52 2.85
460 461 4.744570 TGATGCGAATTAAGAACGTCTCT 58.255 39.130 0.00 0.00 35.13 3.10
461 462 5.643339 ATGATGCGAATTAAGAACGTCTC 57.357 39.130 0.00 0.00 0.00 3.36
462 463 5.692204 CCTATGATGCGAATTAAGAACGTCT 59.308 40.000 0.00 0.00 0.00 4.18
463 464 5.690409 TCCTATGATGCGAATTAAGAACGTC 59.310 40.000 0.00 0.00 0.00 4.34
464 465 5.597806 TCCTATGATGCGAATTAAGAACGT 58.402 37.500 0.00 0.00 0.00 3.99
465 466 6.712241 ATCCTATGATGCGAATTAAGAACG 57.288 37.500 0.00 0.00 0.00 3.95
466 467 9.736023 AAAAATCCTATGATGCGAATTAAGAAC 57.264 29.630 0.00 0.00 0.00 3.01
513 514 9.713684 TCCTCCATGTTTCATAGGAAAATAAAT 57.286 29.630 3.78 0.00 44.18 1.40
514 515 9.713684 ATCCTCCATGTTTCATAGGAAAATAAA 57.286 29.630 3.78 0.00 44.18 1.40
517 518 7.946776 CCTATCCTCCATGTTTCATAGGAAAAT 59.053 37.037 3.78 0.00 44.18 1.82
518 519 7.128728 TCCTATCCTCCATGTTTCATAGGAAAA 59.871 37.037 3.78 0.00 44.18 2.29
519 520 6.619437 TCCTATCCTCCATGTTTCATAGGAAA 59.381 38.462 14.14 0.00 39.17 3.13
520 521 6.150332 TCCTATCCTCCATGTTTCATAGGAA 58.850 40.000 14.14 0.00 39.17 3.36
521 522 5.726560 TCCTATCCTCCATGTTTCATAGGA 58.273 41.667 13.13 13.13 39.61 2.94
522 523 6.270927 TCTTCCTATCCTCCATGTTTCATAGG 59.729 42.308 10.01 10.01 35.93 2.57
523 524 7.308450 TCTTCCTATCCTCCATGTTTCATAG 57.692 40.000 0.00 0.00 0.00 2.23
524 525 7.690454 TTCTTCCTATCCTCCATGTTTCATA 57.310 36.000 0.00 0.00 0.00 2.15
525 526 6.581388 TTCTTCCTATCCTCCATGTTTCAT 57.419 37.500 0.00 0.00 0.00 2.57
526 527 6.581388 ATTCTTCCTATCCTCCATGTTTCA 57.419 37.500 0.00 0.00 0.00 2.69
527 528 7.777440 AGAAATTCTTCCTATCCTCCATGTTTC 59.223 37.037 0.00 0.00 31.28 2.78
528 529 7.646884 AGAAATTCTTCCTATCCTCCATGTTT 58.353 34.615 0.00 0.00 31.28 2.83
529 530 7.218314 AGAAATTCTTCCTATCCTCCATGTT 57.782 36.000 0.00 0.00 31.28 2.71
530 531 6.838401 AGAAATTCTTCCTATCCTCCATGT 57.162 37.500 0.00 0.00 31.28 3.21
531 532 7.285566 TCAAGAAATTCTTCCTATCCTCCATG 58.714 38.462 5.09 0.00 33.78 3.66
532 533 7.457380 TCAAGAAATTCTTCCTATCCTCCAT 57.543 36.000 5.09 0.00 33.78 3.41
533 534 6.891306 TCAAGAAATTCTTCCTATCCTCCA 57.109 37.500 5.09 0.00 33.78 3.86
534 535 8.100164 CCTATCAAGAAATTCTTCCTATCCTCC 58.900 40.741 5.09 0.00 33.78 4.30
535 536 8.875168 TCCTATCAAGAAATTCTTCCTATCCTC 58.125 37.037 5.09 0.00 33.78 3.71
536 537 8.805145 TCCTATCAAGAAATTCTTCCTATCCT 57.195 34.615 5.09 0.00 33.78 3.24
566 567 9.890915 TGCCCTTTGGTTTATAGGAATATAATT 57.109 29.630 0.00 0.00 0.00 1.40
567 568 9.309224 GTGCCCTTTGGTTTATAGGAATATAAT 57.691 33.333 0.00 0.00 0.00 1.28
568 569 8.507761 AGTGCCCTTTGGTTTATAGGAATATAA 58.492 33.333 0.00 0.00 0.00 0.98
569 570 8.052621 AGTGCCCTTTGGTTTATAGGAATATA 57.947 34.615 0.00 0.00 0.00 0.86
570 571 6.922540 AGTGCCCTTTGGTTTATAGGAATAT 58.077 36.000 0.00 0.00 0.00 1.28
571 572 6.335781 AGTGCCCTTTGGTTTATAGGAATA 57.664 37.500 0.00 0.00 0.00 1.75
572 573 5.206905 AGTGCCCTTTGGTTTATAGGAAT 57.793 39.130 0.00 0.00 0.00 3.01
573 574 4.668138 AGTGCCCTTTGGTTTATAGGAA 57.332 40.909 0.00 0.00 0.00 3.36
574 575 5.782677 TTAGTGCCCTTTGGTTTATAGGA 57.217 39.130 0.00 0.00 0.00 2.94
575 576 5.359860 CCTTTAGTGCCCTTTGGTTTATAGG 59.640 44.000 0.00 0.00 0.00 2.57
576 577 6.184789 TCCTTTAGTGCCCTTTGGTTTATAG 58.815 40.000 0.00 0.00 0.00 1.31
577 578 6.142259 TCCTTTAGTGCCCTTTGGTTTATA 57.858 37.500 0.00 0.00 0.00 0.98
578 579 5.005628 TCCTTTAGTGCCCTTTGGTTTAT 57.994 39.130 0.00 0.00 0.00 1.40
579 580 4.456662 TCCTTTAGTGCCCTTTGGTTTA 57.543 40.909 0.00 0.00 0.00 2.01
580 581 3.322191 TCCTTTAGTGCCCTTTGGTTT 57.678 42.857 0.00 0.00 0.00 3.27
581 582 2.963101 GTTCCTTTAGTGCCCTTTGGTT 59.037 45.455 0.00 0.00 0.00 3.67
582 583 2.177016 AGTTCCTTTAGTGCCCTTTGGT 59.823 45.455 0.00 0.00 0.00 3.67
583 584 2.876581 AGTTCCTTTAGTGCCCTTTGG 58.123 47.619 0.00 0.00 0.00 3.28
584 585 4.937201 AAAGTTCCTTTAGTGCCCTTTG 57.063 40.909 0.00 0.00 31.35 2.77
585 586 5.208890 AGAAAAGTTCCTTTAGTGCCCTTT 58.791 37.500 0.00 0.00 31.99 3.11
586 587 4.804597 AGAAAAGTTCCTTTAGTGCCCTT 58.195 39.130 0.00 0.00 31.99 3.95
587 588 4.455070 AGAAAAGTTCCTTTAGTGCCCT 57.545 40.909 0.00 0.00 31.99 5.19
588 589 4.341235 ACAAGAAAAGTTCCTTTAGTGCCC 59.659 41.667 0.00 0.00 31.99 5.36
589 590 5.515797 ACAAGAAAAGTTCCTTTAGTGCC 57.484 39.130 0.00 0.00 31.99 5.01
590 591 7.492352 TCTACAAGAAAAGTTCCTTTAGTGC 57.508 36.000 0.00 0.00 31.99 4.40
591 592 9.110502 ACTTCTACAAGAAAAGTTCCTTTAGTG 57.889 33.333 0.00 0.00 33.19 2.74
592 593 9.682465 AACTTCTACAAGAAAAGTTCCTTTAGT 57.318 29.630 0.00 0.00 38.51 2.24
626 627 8.869109 TGTGGAGGAATTTTGTAGAAATTTCAT 58.131 29.630 19.99 12.28 34.92 2.57
627 628 8.141268 GTGTGGAGGAATTTTGTAGAAATTTCA 58.859 33.333 19.99 3.83 34.92 2.69
628 629 7.598869 GGTGTGGAGGAATTTTGTAGAAATTTC 59.401 37.037 10.33 10.33 33.50 2.17
629 630 7.070571 TGGTGTGGAGGAATTTTGTAGAAATTT 59.929 33.333 0.00 0.00 30.68 1.82
630 631 6.553100 TGGTGTGGAGGAATTTTGTAGAAATT 59.447 34.615 0.00 0.00 32.98 1.82
631 632 6.074648 TGGTGTGGAGGAATTTTGTAGAAAT 58.925 36.000 0.00 0.00 0.00 2.17
632 633 5.450453 TGGTGTGGAGGAATTTTGTAGAAA 58.550 37.500 0.00 0.00 0.00 2.52
633 634 5.055265 TGGTGTGGAGGAATTTTGTAGAA 57.945 39.130 0.00 0.00 0.00 2.10
634 635 4.715534 TGGTGTGGAGGAATTTTGTAGA 57.284 40.909 0.00 0.00 0.00 2.59
635 636 5.278957 CCTTTGGTGTGGAGGAATTTTGTAG 60.279 44.000 0.00 0.00 32.11 2.74
636 637 4.586841 CCTTTGGTGTGGAGGAATTTTGTA 59.413 41.667 0.00 0.00 32.11 2.41
637 638 3.387699 CCTTTGGTGTGGAGGAATTTTGT 59.612 43.478 0.00 0.00 32.11 2.83
638 639 3.640967 TCCTTTGGTGTGGAGGAATTTTG 59.359 43.478 0.00 0.00 36.67 2.44
639 640 3.897505 CTCCTTTGGTGTGGAGGAATTTT 59.102 43.478 0.00 0.00 44.44 1.82
640 641 3.500343 CTCCTTTGGTGTGGAGGAATTT 58.500 45.455 0.00 0.00 44.44 1.82
641 642 3.160679 CTCCTTTGGTGTGGAGGAATT 57.839 47.619 0.00 0.00 44.44 2.17
642 643 2.887151 CTCCTTTGGTGTGGAGGAAT 57.113 50.000 0.00 0.00 44.44 3.01
646 647 1.303643 GGCCTCCTTTGGTGTGGAG 60.304 63.158 0.00 0.00 46.91 3.86
647 648 1.360393 AAGGCCTCCTTTGGTGTGGA 61.360 55.000 5.23 0.00 41.69 4.02
648 649 0.404040 TAAGGCCTCCTTTGGTGTGG 59.596 55.000 5.23 0.00 41.69 4.17
649 650 1.614317 CCTAAGGCCTCCTTTGGTGTG 60.614 57.143 5.23 0.00 46.36 3.82
650 651 0.698818 CCTAAGGCCTCCTTTGGTGT 59.301 55.000 5.23 0.00 46.36 4.16
651 652 3.577389 CCTAAGGCCTCCTTTGGTG 57.423 57.895 5.23 0.00 46.36 4.17
654 655 1.630878 ACACTCCTAAGGCCTCCTTTG 59.369 52.381 5.23 1.22 41.69 2.77
655 656 2.046280 ACACTCCTAAGGCCTCCTTT 57.954 50.000 5.23 0.00 41.69 3.11
656 657 2.046280 AACACTCCTAAGGCCTCCTT 57.954 50.000 5.23 3.40 46.63 3.36
657 658 2.040412 CAAAACACTCCTAAGGCCTCCT 59.960 50.000 5.23 0.00 33.87 3.69
658 659 2.437413 CAAAACACTCCTAAGGCCTCC 58.563 52.381 5.23 0.00 0.00 4.30
659 660 2.437413 CCAAAACACTCCTAAGGCCTC 58.563 52.381 5.23 0.00 0.00 4.70
660 661 1.075536 CCCAAAACACTCCTAAGGCCT 59.924 52.381 0.00 0.00 0.00 5.19
661 662 1.074889 TCCCAAAACACTCCTAAGGCC 59.925 52.381 0.00 0.00 0.00 5.19
662 663 2.160205 GTCCCAAAACACTCCTAAGGC 58.840 52.381 0.00 0.00 0.00 4.35
663 664 2.423577 CGTCCCAAAACACTCCTAAGG 58.576 52.381 0.00 0.00 0.00 2.69
664 665 2.038033 TCCGTCCCAAAACACTCCTAAG 59.962 50.000 0.00 0.00 0.00 2.18
665 666 2.038033 CTCCGTCCCAAAACACTCCTAA 59.962 50.000 0.00 0.00 0.00 2.69
666 667 1.621814 CTCCGTCCCAAAACACTCCTA 59.378 52.381 0.00 0.00 0.00 2.94
667 668 0.396811 CTCCGTCCCAAAACACTCCT 59.603 55.000 0.00 0.00 0.00 3.69
668 669 0.605589 CCTCCGTCCCAAAACACTCC 60.606 60.000 0.00 0.00 0.00 3.85
669 670 0.605589 CCCTCCGTCCCAAAACACTC 60.606 60.000 0.00 0.00 0.00 3.51
670 671 1.057851 TCCCTCCGTCCCAAAACACT 61.058 55.000 0.00 0.00 0.00 3.55
671 672 0.605589 CTCCCTCCGTCCCAAAACAC 60.606 60.000 0.00 0.00 0.00 3.32
672 673 1.057851 ACTCCCTCCGTCCCAAAACA 61.058 55.000 0.00 0.00 0.00 2.83
673 674 0.605589 CACTCCCTCCGTCCCAAAAC 60.606 60.000 0.00 0.00 0.00 2.43
674 675 1.758592 CACTCCCTCCGTCCCAAAA 59.241 57.895 0.00 0.00 0.00 2.44
675 676 2.221299 CCACTCCCTCCGTCCCAAA 61.221 63.158 0.00 0.00 0.00 3.28
676 677 2.606519 CCACTCCCTCCGTCCCAA 60.607 66.667 0.00 0.00 0.00 4.12
677 678 3.923645 ACCACTCCCTCCGTCCCA 61.924 66.667 0.00 0.00 0.00 4.37
678 679 3.391382 CACCACTCCCTCCGTCCC 61.391 72.222 0.00 0.00 0.00 4.46
679 680 1.765597 AAACACCACTCCCTCCGTCC 61.766 60.000 0.00 0.00 0.00 4.79
680 681 0.108019 AAAACACCACTCCCTCCGTC 59.892 55.000 0.00 0.00 0.00 4.79
681 682 0.179029 CAAAACACCACTCCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
682 683 0.107831 TCAAAACACCACTCCCTCCG 59.892 55.000 0.00 0.00 0.00 4.63
683 684 1.420138 TCTCAAAACACCACTCCCTCC 59.580 52.381 0.00 0.00 0.00 4.30
684 685 2.879026 GTTCTCAAAACACCACTCCCTC 59.121 50.000 0.00 0.00 0.00 4.30
685 686 2.422945 GGTTCTCAAAACACCACTCCCT 60.423 50.000 0.00 0.00 0.00 4.20
686 687 1.954382 GGTTCTCAAAACACCACTCCC 59.046 52.381 0.00 0.00 0.00 4.30
687 688 1.602377 CGGTTCTCAAAACACCACTCC 59.398 52.381 0.00 0.00 0.00 3.85
688 689 1.602377 CCGGTTCTCAAAACACCACTC 59.398 52.381 0.00 0.00 0.00 3.51
689 690 1.210967 TCCGGTTCTCAAAACACCACT 59.789 47.619 0.00 0.00 0.00 4.00
690 691 1.602377 CTCCGGTTCTCAAAACACCAC 59.398 52.381 0.00 0.00 0.00 4.16
691 692 1.961793 CTCCGGTTCTCAAAACACCA 58.038 50.000 0.00 0.00 0.00 4.17
692 693 0.591659 GCTCCGGTTCTCAAAACACC 59.408 55.000 0.00 0.00 0.00 4.16
745 746 1.983972 CGAGATACTAATCGGCTGCC 58.016 55.000 9.11 9.11 37.19 4.85
760 761 3.695606 GGCCCACTGTCAGCGAGA 61.696 66.667 0.00 0.00 0.00 4.04
818 819 4.715130 TCCGAGACCTGGGTGGGG 62.715 72.222 0.00 0.00 41.11 4.96
855 856 0.103937 GGATTCAGACGAGAGGGCTG 59.896 60.000 0.00 0.00 38.47 4.85
963 965 1.884579 GATACGGGGCTACAGATTCGA 59.115 52.381 0.00 0.00 0.00 3.71
1355 1622 2.337170 CACACGGGCACTACGTCA 59.663 61.111 0.00 0.00 43.58 4.35
1412 1679 2.464865 GAACAATCAGACGGATCCTCG 58.535 52.381 10.75 0.00 34.28 4.63
1483 1750 9.595823 AAATGATAAGCGTAACAACATAGTACT 57.404 29.630 0.00 0.00 0.00 2.73
1791 2076 4.927267 ACATATCAACAAGACCAGGGAA 57.073 40.909 0.00 0.00 0.00 3.97
1830 2142 7.931578 TCACCACATCGAATATTTTACCTTT 57.068 32.000 0.00 0.00 0.00 3.11
1884 2196 4.681483 GGTTTTAAAATGCACAGAGTGAGC 59.319 41.667 3.52 0.00 35.23 4.26
2610 2925 5.662208 AGCTAGATGCCTGCATAGATATTCT 59.338 40.000 4.30 0.00 44.23 2.40
2940 3255 0.610232 GTGCCCAAGCTCCATCTTGT 60.610 55.000 0.00 0.00 41.29 3.16
3218 3534 3.117738 AGGCTCCCCTTCTCAAACATATG 60.118 47.826 0.00 0.00 38.74 1.78
3220 3536 2.562296 AGGCTCCCCTTCTCAAACATA 58.438 47.619 0.00 0.00 38.74 2.29
3221 3537 1.376649 AGGCTCCCCTTCTCAAACAT 58.623 50.000 0.00 0.00 38.74 2.71
3233 3549 2.512515 CACTGCGCTAAGGCTCCC 60.513 66.667 9.73 0.00 36.09 4.30
3235 3551 0.108329 TTACCACTGCGCTAAGGCTC 60.108 55.000 9.73 0.00 36.09 4.70
3236 3552 0.323629 TTTACCACTGCGCTAAGGCT 59.676 50.000 9.73 1.47 36.09 4.58
3237 3553 0.727398 CTTTACCACTGCGCTAAGGC 59.273 55.000 9.73 0.00 0.00 4.35
3239 3555 1.394917 CAGCTTTACCACTGCGCTAAG 59.605 52.381 9.73 0.00 0.00 2.18
3240 3556 1.438651 CAGCTTTACCACTGCGCTAA 58.561 50.000 9.73 0.00 0.00 3.09
3241 3557 3.137484 CAGCTTTACCACTGCGCTA 57.863 52.632 9.73 0.00 0.00 4.26
3242 3558 3.972227 CAGCTTTACCACTGCGCT 58.028 55.556 9.73 0.00 0.00 5.92
3246 3562 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3247 3563 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3248 3564 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3249 3565 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3250 3566 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3251 3567 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3252 3568 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3253 3569 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3254 3570 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3255 3571 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3256 3572 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3257 3573 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3258 3574 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3259 3575 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3260 3576 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3261 3577 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3272 3588 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3273 3589 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3274 3590 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3275 3591 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3276 3592 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3277 3593 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3278 3594 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3279 3595 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3280 3596 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3281 3597 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3282 3598 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3283 3599 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3284 3600 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3285 3601 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3286 3602 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3287 3603 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3288 3604 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3289 3605 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3290 3606 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3291 3607 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3292 3608 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3293 3609 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3294 3610 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3306 3622 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3307 3623 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3308 3624 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3309 3625 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3310 3626 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3311 3627 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3312 3628 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3313 3629 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3314 3630 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3315 3631 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3316 3632 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3317 3633 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3318 3634 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3319 3635 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3320 3636 0.605589 GTTGTACGCAGCCTTTCCCT 60.606 55.000 0.00 0.00 0.00 4.20
3321 3637 0.887387 TGTTGTACGCAGCCTTTCCC 60.887 55.000 0.00 0.00 0.00 3.97
3322 3638 0.517316 CTGTTGTACGCAGCCTTTCC 59.483 55.000 4.64 0.00 0.00 3.13
3323 3639 1.194772 GTCTGTTGTACGCAGCCTTTC 59.805 52.381 11.13 0.00 34.21 2.62
3324 3640 1.226746 GTCTGTTGTACGCAGCCTTT 58.773 50.000 11.13 0.00 34.21 3.11
3325 3641 0.602905 GGTCTGTTGTACGCAGCCTT 60.603 55.000 11.13 0.00 34.21 4.35
3326 3642 1.004918 GGTCTGTTGTACGCAGCCT 60.005 57.895 11.13 0.00 34.21 4.58
3327 3643 2.033194 GGGTCTGTTGTACGCAGCC 61.033 63.158 11.13 13.66 34.21 4.85
3328 3644 0.882927 TTGGGTCTGTTGTACGCAGC 60.883 55.000 11.13 7.42 40.36 5.25
3329 3645 1.531149 CTTTGGGTCTGTTGTACGCAG 59.469 52.381 10.05 10.05 40.36 5.18
3330 3646 1.134340 ACTTTGGGTCTGTTGTACGCA 60.134 47.619 0.00 0.00 37.94 5.24
3331 3647 1.263217 CACTTTGGGTCTGTTGTACGC 59.737 52.381 0.00 0.00 0.00 4.42
3332 3648 1.871039 CCACTTTGGGTCTGTTGTACG 59.129 52.381 0.00 0.00 32.67 3.67
3333 3649 2.927028 ACCACTTTGGGTCTGTTGTAC 58.073 47.619 0.00 0.00 43.37 2.90
3342 3658 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3343 3659 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3344 3660 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3345 3661 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3346 3662 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3347 3663 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3348 3664 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3349 3665 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3350 3666 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3351 3667 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3352 3668 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3353 3669 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3354 3670 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3355 3671 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3356 3672 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3357 3673 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3358 3674 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3359 3675 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
3360 3676 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
3372 3688 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3375 3691 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3376 3692 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3377 3693 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3378 3694 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3380 3696 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3381 3697 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3382 3698 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3383 3699 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
3384 3700 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
3385 3701 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
3386 3702 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
3387 3703 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
3388 3704 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
3599 3915 7.385205 TGACTTCAGTAGTATCTTGCAGAAAAC 59.615 37.037 0.00 0.00 37.17 2.43
3688 4005 7.996098 TTTAGGAACAAATAGAGAACCCAAG 57.004 36.000 0.00 0.00 0.00 3.61
3843 4160 3.954200 TGTGTGCACCATCATACTTCAT 58.046 40.909 15.69 0.00 0.00 2.57
3844 4161 3.415457 TGTGTGCACCATCATACTTCA 57.585 42.857 15.69 0.00 0.00 3.02
3854 4171 4.340666 ACATTATTCTTGTTGTGTGCACCA 59.659 37.500 15.69 9.21 0.00 4.17
3873 4190 5.244402 TGAGATGCTTGGTGATTTCAACATT 59.756 36.000 0.00 0.00 43.96 2.71
3906 4223 9.760926 ATAGATGCTCTCCTATTTCAGTATACA 57.239 33.333 5.50 0.00 0.00 2.29
3986 4303 1.108727 CCAACAGAGGCAGGCACAAA 61.109 55.000 0.00 0.00 0.00 2.83
3987 4304 1.529010 CCAACAGAGGCAGGCACAA 60.529 57.895 0.00 0.00 0.00 3.33
3988 4305 2.113774 CCAACAGAGGCAGGCACA 59.886 61.111 0.00 0.00 0.00 4.57
4064 4382 8.690840 AGAAAAATAGAAAAATTCAGAAACGCG 58.309 29.630 3.53 3.53 0.00 6.01
4089 4407 5.738909 TGCTCTGAAAGGAAAGGATAAGAG 58.261 41.667 0.00 0.00 34.40 2.85
4311 4629 9.520204 AATAGCATAGTTTGAAATTCCAAATCG 57.480 29.630 0.00 0.00 38.18 3.34
4325 4643 8.671921 CAGACACTTCATTGAATAGCATAGTTT 58.328 33.333 0.00 0.00 0.00 2.66
4390 4708 3.612479 GCAACTTTGTCCATGGTCATGAC 60.612 47.826 17.91 17.91 41.20 3.06
4508 4826 7.389607 GGTTAGCGTGATTGGGTATACATAATT 59.610 37.037 5.01 0.00 0.00 1.40
4577 4895 7.669722 AGGGCACAGAAAAAGAGAAAATATACA 59.330 33.333 0.00 0.00 0.00 2.29
4582 4900 4.651045 ACAGGGCACAGAAAAAGAGAAAAT 59.349 37.500 0.00 0.00 0.00 1.82
4937 5256 0.380378 GAACTTGAACTTGCACGGCA 59.620 50.000 0.00 0.00 36.47 5.69
4941 5260 6.528072 GGCATTAATAGAACTTGAACTTGCAC 59.472 38.462 0.00 0.00 0.00 4.57
5088 5407 8.246871 GCCTGTCAAGCTTAATTAAAAAGAGAT 58.753 33.333 0.00 0.00 0.00 2.75
5089 5408 7.230510 TGCCTGTCAAGCTTAATTAAAAAGAGA 59.769 33.333 0.00 0.00 0.00 3.10
5215 5538 3.070590 TCGATGATTCATGCTCACCAGAT 59.929 43.478 3.32 0.00 0.00 2.90
5338 5661 7.587037 TTCATCAATATCCCATGGAAAGTTC 57.413 36.000 15.22 0.00 34.34 3.01
5376 5699 8.752766 AATGCAAATATGAGTGAAAGAGTTTG 57.247 30.769 0.00 0.00 0.00 2.93
5510 5833 4.712763 CAACGCAACTCTAGAAACCAATC 58.287 43.478 0.00 0.00 0.00 2.67
5528 5851 4.113354 GGTCTCTAACTCCAATAGCAACG 58.887 47.826 0.00 0.00 0.00 4.10
5552 5875 6.361481 CAGCAACACAACACTAGAAATCAATG 59.639 38.462 0.00 0.00 0.00 2.82
5557 5880 5.835113 AACAGCAACACAACACTAGAAAT 57.165 34.783 0.00 0.00 0.00 2.17
5565 5888 5.666462 TCTTACTCTAACAGCAACACAACA 58.334 37.500 0.00 0.00 0.00 3.33
5597 5923 8.504005 ACAATAGTAACAAAAGTGAAGGAATCG 58.496 33.333 0.00 0.00 0.00 3.34
5710 6042 5.459762 CGTTGGATTAACATGATTTGATGGC 59.540 40.000 0.00 0.00 39.30 4.40
5788 6121 4.805192 GTGTAGCCGTCGATAATTGGTAAA 59.195 41.667 0.00 0.00 0.00 2.01
5789 6122 4.098349 AGTGTAGCCGTCGATAATTGGTAA 59.902 41.667 0.00 0.00 0.00 2.85
5796 6129 3.185188 GTCGATAGTGTAGCCGTCGATAA 59.815 47.826 0.00 0.00 42.37 1.75
5889 6222 4.796830 ACTAGTAAATGTGTACGTGCGATG 59.203 41.667 0.00 0.00 0.00 3.84
5902 6235 9.788960 GCCTTATTTGAAGGAAACTAGTAAATG 57.211 33.333 7.54 0.00 42.68 2.32
5905 6238 8.927675 TTGCCTTATTTGAAGGAAACTAGTAA 57.072 30.769 7.54 0.00 42.68 2.24
5937 6270 9.248291 ACAAATGTAGCATGAACTAAACAAAAG 57.752 29.630 0.00 0.00 0.00 2.27
5951 6284 3.680642 GCGACATGACAAATGTAGCAT 57.319 42.857 15.68 0.00 45.63 3.79
5955 6288 2.087501 ACGGCGACATGACAAATGTA 57.912 45.000 16.62 0.00 31.52 2.29
5986 6319 1.417145 AGATGCTCAAGGCTCTGATCC 59.583 52.381 0.00 0.00 42.39 3.36
6019 6352 4.552767 CGCAAAGGTAGTGAACAGAAACAG 60.553 45.833 0.00 0.00 0.00 3.16
6027 6360 0.605589 AGCCCGCAAAGGTAGTGAAC 60.606 55.000 0.00 0.00 38.74 3.18
6122 6456 7.859325 AACTGTTTATTGCGGTAGACAATAT 57.141 32.000 0.00 0.00 39.17 1.28
6169 6503 9.018716 CAAACAAATTGGCAGGAAAAATAAAAC 57.981 29.630 0.00 0.00 35.27 2.43
6307 6648 7.506114 AGTGGAATATAGATACGCTTTTCCAA 58.494 34.615 3.26 0.00 41.84 3.53
6336 6677 6.597672 TGAGTGACTTTCTGCTTTCAAAACTA 59.402 34.615 0.00 0.00 0.00 2.24
6489 6830 5.862924 AAACAGTGACTTATCATCAACGG 57.137 39.130 0.00 0.00 37.14 4.44
6539 6880 4.651778 AGCTACCTGTTGATACAAAAGCA 58.348 39.130 0.00 0.00 36.53 3.91
6795 7136 1.026584 TCCACTTCTCGTGACGTTCA 58.973 50.000 4.40 0.00 46.81 3.18
6801 7142 1.596934 GGCCATCCACTTCTCGTGA 59.403 57.895 0.00 0.00 46.81 4.35
6891 7232 7.174772 GGAAAATGCCAGGAATAAAACACAAAT 59.825 33.333 0.00 0.00 0.00 2.32
6915 7256 2.271777 ACGGGAAGGTGGAAATAAGGA 58.728 47.619 0.00 0.00 0.00 3.36
7043 7384 5.568482 TGAAACTCAATCAACAAACACTCG 58.432 37.500 0.00 0.00 0.00 4.18
7080 7422 3.644966 TTTCACTTCCACAGTTCCAGT 57.355 42.857 0.00 0.00 30.92 4.00
7146 7488 2.555757 GCATGGGAGATGGAAATACAGC 59.444 50.000 0.00 0.00 0.00 4.40
7166 7508 9.525409 TTATTCCGTAGAGTAACTAGAAAATGC 57.475 33.333 0.00 0.00 0.00 3.56
7201 7543 3.374678 CGCTGTAAAAGGCGGGTATAAAA 59.625 43.478 0.00 0.00 46.42 1.52
7205 7547 3.074594 CGCTGTAAAAGGCGGGTAT 57.925 52.632 0.00 0.00 46.42 2.73
7206 7548 4.602159 CGCTGTAAAAGGCGGGTA 57.398 55.556 0.00 0.00 46.42 3.69
7232 7575 2.806198 CAAAAGCGCCGCACATGG 60.806 61.111 13.36 0.00 0.00 3.66
7238 7581 1.539776 CTTCAACACAAAAGCGCCGC 61.540 55.000 2.29 0.00 0.00 6.53
7246 7589 3.438781 AGACGCAACTTCTTCAACACAAA 59.561 39.130 0.00 0.00 0.00 2.83
7280 7623 0.394899 GCCTTCAGGGATGAACAGGG 60.395 60.000 0.00 0.00 37.23 4.45
7286 7629 2.688666 AGGCGCCTTCAGGGATGA 60.689 61.111 27.08 0.00 37.23 2.92
7358 7781 5.246429 GGAGAAGTAGGTTATGATACCAGGG 59.754 48.000 0.00 0.00 40.82 4.45
7359 7782 6.078664 AGGAGAAGTAGGTTATGATACCAGG 58.921 44.000 0.00 0.00 40.82 4.45
7360 7783 8.887264 ATAGGAGAAGTAGGTTATGATACCAG 57.113 38.462 0.00 0.00 40.82 4.00
7361 7784 7.894364 GGATAGGAGAAGTAGGTTATGATACCA 59.106 40.741 0.00 0.00 40.82 3.25
7362 7785 8.117312 AGGATAGGAGAAGTAGGTTATGATACC 58.883 40.741 0.00 0.00 38.53 2.73
7363 7786 9.181061 GAGGATAGGAGAAGTAGGTTATGATAC 57.819 40.741 0.00 0.00 0.00 2.24
7364 7787 8.901841 TGAGGATAGGAGAAGTAGGTTATGATA 58.098 37.037 0.00 0.00 0.00 2.15
7365 7788 7.770662 TGAGGATAGGAGAAGTAGGTTATGAT 58.229 38.462 0.00 0.00 0.00 2.45
7366 7789 7.073853 TCTGAGGATAGGAGAAGTAGGTTATGA 59.926 40.741 0.00 0.00 0.00 2.15
7367 7790 7.235079 TCTGAGGATAGGAGAAGTAGGTTATG 58.765 42.308 0.00 0.00 0.00 1.90
7368 7791 7.409408 TCTGAGGATAGGAGAAGTAGGTTAT 57.591 40.000 0.00 0.00 0.00 1.89
7369 7792 6.843473 TCTGAGGATAGGAGAAGTAGGTTA 57.157 41.667 0.00 0.00 0.00 2.85
7370 7793 5.735733 TCTGAGGATAGGAGAAGTAGGTT 57.264 43.478 0.00 0.00 0.00 3.50
7371 7794 5.735733 TTCTGAGGATAGGAGAAGTAGGT 57.264 43.478 0.00 0.00 0.00 3.08
7372 7795 7.425224 TTTTTCTGAGGATAGGAGAAGTAGG 57.575 40.000 0.00 0.00 0.00 3.18
7375 7798 9.674068 GTTTATTTTTCTGAGGATAGGAGAAGT 57.326 33.333 0.00 0.00 0.00 3.01
7376 7799 9.114952 GGTTTATTTTTCTGAGGATAGGAGAAG 57.885 37.037 0.00 0.00 0.00 2.85
7377 7800 8.836735 AGGTTTATTTTTCTGAGGATAGGAGAA 58.163 33.333 0.00 0.00 0.00 2.87
7378 7801 8.393959 AGGTTTATTTTTCTGAGGATAGGAGA 57.606 34.615 0.00 0.00 0.00 3.71
7379 7802 9.549078 GTAGGTTTATTTTTCTGAGGATAGGAG 57.451 37.037 0.00 0.00 0.00 3.69
7380 7803 8.491958 GGTAGGTTTATTTTTCTGAGGATAGGA 58.508 37.037 0.00 0.00 0.00 2.94
7381 7804 8.495260 AGGTAGGTTTATTTTTCTGAGGATAGG 58.505 37.037 0.00 0.00 0.00 2.57
7382 7805 9.331282 CAGGTAGGTTTATTTTTCTGAGGATAG 57.669 37.037 0.00 0.00 0.00 2.08
7383 7806 8.832735 ACAGGTAGGTTTATTTTTCTGAGGATA 58.167 33.333 0.00 0.00 0.00 2.59
7384 7807 7.699878 ACAGGTAGGTTTATTTTTCTGAGGAT 58.300 34.615 0.00 0.00 0.00 3.24
7406 7829 7.095732 TGTCTTAATCTAGATCGCGTAGTACAG 60.096 40.741 5.51 0.00 0.00 2.74
7414 7837 5.048153 TCCATGTCTTAATCTAGATCGCG 57.952 43.478 5.51 0.00 0.00 5.87
7416 7839 5.866633 GCCTTCCATGTCTTAATCTAGATCG 59.133 44.000 5.51 0.00 0.00 3.69
7426 7849 1.281419 TTCCCGCCTTCCATGTCTTA 58.719 50.000 0.00 0.00 0.00 2.10
7474 8097 5.171339 ACTAAGGCTCTGACAATCAACAT 57.829 39.130 0.00 0.00 0.00 2.71
7536 8161 0.898326 TCCTGTAGCTGGCGAGTTCA 60.898 55.000 0.00 0.00 0.00 3.18
7551 8176 0.468214 TCTCGGCTCCTATGGTCCTG 60.468 60.000 0.00 0.00 0.00 3.86
7564 8189 3.021451 CCCATTGGGTATTCTCGGC 57.979 57.895 14.10 0.00 38.25 5.54
7632 8263 6.155827 GGCTGCAACAAATTTATACACTTGA 58.844 36.000 0.50 0.00 0.00 3.02
7650 8281 1.671054 GCTCGTACAAAGGGCTGCA 60.671 57.895 0.50 0.00 0.00 4.41
7654 8285 0.741221 CTGGAGCTCGTACAAAGGGC 60.741 60.000 7.83 0.00 0.00 5.19
7658 8289 2.742053 GCATTTCTGGAGCTCGTACAAA 59.258 45.455 7.83 4.56 0.00 2.83
7665 8296 1.203287 GGTTTGGCATTTCTGGAGCTC 59.797 52.381 4.71 4.71 0.00 4.09
7718 8349 2.086869 CTCTACAAAGCATGGTGGTGG 58.913 52.381 11.49 9.17 0.00 4.61
7733 8364 5.562506 TCATGTGTGCAGTAGTACTCTAC 57.437 43.478 0.00 3.37 44.79 2.59
7734 8365 4.096532 GCTCATGTGTGCAGTAGTACTCTA 59.903 45.833 0.00 0.00 34.92 2.43
7735 8366 3.119316 GCTCATGTGTGCAGTAGTACTCT 60.119 47.826 0.00 0.00 34.92 3.24
7736 8367 3.182967 GCTCATGTGTGCAGTAGTACTC 58.817 50.000 0.00 0.00 34.92 2.59
7737 8368 2.562738 TGCTCATGTGTGCAGTAGTACT 59.437 45.455 0.00 0.00 39.29 2.73
7817 8448 0.031616 AGGGAGCAGAGAGGGGTAAG 60.032 60.000 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.