Multiple sequence alignment - TraesCS3B01G298900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G298900 | chr3B | 100.000 | 6151 | 0 | 0 | 1 | 6151 | 479582719 | 479576569 | 0.000000e+00 | 11359.0 |
1 | TraesCS3B01G298900 | chr3B | 94.470 | 217 | 11 | 1 | 33 | 249 | 479611151 | 479610936 | 3.550000e-87 | 333.0 |
2 | TraesCS3B01G298900 | chr3B | 93.814 | 194 | 8 | 3 | 34 | 224 | 810437978 | 810437786 | 7.800000e-74 | 289.0 |
3 | TraesCS3B01G298900 | chr3A | 94.441 | 4371 | 130 | 45 | 1856 | 6151 | 489754217 | 489749885 | 0.000000e+00 | 6621.0 |
4 | TraesCS3B01G298900 | chr3A | 94.118 | 986 | 51 | 6 | 871 | 1854 | 489755245 | 489754265 | 0.000000e+00 | 1493.0 |
5 | TraesCS3B01G298900 | chr3A | 92.366 | 131 | 9 | 1 | 280 | 410 | 489757135 | 489757006 | 1.050000e-42 | 185.0 |
6 | TraesCS3B01G298900 | chr3D | 87.647 | 2291 | 140 | 55 | 3913 | 6132 | 368227788 | 368225570 | 0.000000e+00 | 2531.0 |
7 | TraesCS3B01G298900 | chr3D | 90.467 | 986 | 51 | 19 | 871 | 1854 | 368230514 | 368229570 | 0.000000e+00 | 1260.0 |
8 | TraesCS3B01G298900 | chr3D | 92.503 | 787 | 43 | 8 | 1856 | 2636 | 368229523 | 368228747 | 0.000000e+00 | 1112.0 |
9 | TraesCS3B01G298900 | chr3D | 92.111 | 431 | 25 | 6 | 3492 | 3920 | 368228257 | 368227834 | 3.170000e-167 | 599.0 |
10 | TraesCS3B01G298900 | chr3D | 90.287 | 453 | 25 | 11 | 2967 | 3403 | 368228747 | 368228298 | 5.350000e-160 | 575.0 |
11 | TraesCS3B01G298900 | chr3D | 88.290 | 427 | 26 | 15 | 444 | 855 | 368231014 | 368230597 | 1.990000e-134 | 490.0 |
12 | TraesCS3B01G298900 | chr3D | 94.652 | 187 | 8 | 2 | 34 | 219 | 603361861 | 603362046 | 7.800000e-74 | 289.0 |
13 | TraesCS3B01G298900 | chr7D | 90.830 | 229 | 17 | 2 | 1 | 225 | 40732179 | 40732407 | 2.790000e-78 | 303.0 |
14 | TraesCS3B01G298900 | chr2B | 90.667 | 225 | 15 | 3 | 1 | 224 | 135509167 | 135509386 | 1.680000e-75 | 294.0 |
15 | TraesCS3B01G298900 | chr4A | 88.936 | 235 | 19 | 5 | 1 | 231 | 30353388 | 30353619 | 3.630000e-72 | 283.0 |
16 | TraesCS3B01G298900 | chr5B | 92.308 | 195 | 15 | 0 | 31 | 225 | 591183198 | 591183004 | 1.690000e-70 | 278.0 |
17 | TraesCS3B01G298900 | chr6B | 87.660 | 235 | 23 | 4 | 1 | 231 | 213535774 | 213535542 | 1.020000e-67 | 268.0 |
18 | TraesCS3B01G298900 | chr1A | 90.000 | 210 | 16 | 3 | 1 | 206 | 167154150 | 167153942 | 3.660000e-67 | 267.0 |
19 | TraesCS3B01G298900 | chr7B | 100.000 | 29 | 0 | 0 | 955 | 983 | 327638037 | 327638009 | 3.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G298900 | chr3B | 479576569 | 479582719 | 6150 | True | 11359.000000 | 11359 | 100.000000 | 1 | 6151 | 1 | chr3B.!!$R1 | 6150 |
1 | TraesCS3B01G298900 | chr3A | 489749885 | 489757135 | 7250 | True | 2766.333333 | 6621 | 93.641667 | 280 | 6151 | 3 | chr3A.!!$R1 | 5871 |
2 | TraesCS3B01G298900 | chr3D | 368225570 | 368231014 | 5444 | True | 1094.500000 | 2531 | 90.217500 | 444 | 6132 | 6 | chr3D.!!$R1 | 5688 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
640 | 1991 | 0.110486 | CACCACTAACCACAGGGCTT | 59.890 | 55.0 | 0.00 | 0.0 | 37.90 | 4.35 | F |
910 | 2351 | 0.250038 | CCATCGGCTCCCATACTGTG | 60.250 | 60.0 | 0.00 | 0.0 | 0.00 | 3.66 | F |
1324 | 2777 | 0.250770 | AGCGGTGAGGTTCCCTTTTC | 60.251 | 55.0 | 0.00 | 0.0 | 31.76 | 2.29 | F |
2293 | 3797 | 0.464036 | TGCCTTGTGCTCCTATACCG | 59.536 | 55.0 | 0.00 | 0.0 | 42.00 | 4.02 | F |
2786 | 4292 | 0.449388 | GCGCTGAAGTTGGATTGAGG | 59.551 | 55.0 | 0.00 | 0.0 | 0.00 | 3.86 | F |
2789 | 4295 | 2.673368 | CGCTGAAGTTGGATTGAGGTAC | 59.327 | 50.0 | 0.00 | 0.0 | 0.00 | 3.34 | F |
4653 | 6255 | 1.138568 | CCTCCCTTCATGATCAGCCT | 58.861 | 55.0 | 0.09 | 0.0 | 0.00 | 4.58 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1458 | 2913 | 0.419865 | TCAGGTCCCCCAGAACCATA | 59.580 | 55.000 | 0.0 | 0.0 | 29.47 | 2.74 | R |
1846 | 3301 | 0.464373 | ATCAGCATGGCCCAGTAACG | 60.464 | 55.000 | 0.0 | 0.0 | 36.16 | 3.18 | R |
2725 | 4231 | 2.223203 | GCATGTGAAGTATGCTGCTGAC | 60.223 | 50.000 | 0.0 | 0.0 | 45.64 | 3.51 | R |
4191 | 5767 | 1.277579 | TAATCACCGTTAGTGCCCCA | 58.722 | 50.000 | 0.0 | 0.0 | 46.81 | 4.96 | R |
4627 | 6229 | 4.365368 | TGATCATGAAGGGAGGAGAGAAA | 58.635 | 43.478 | 0.0 | 0.0 | 0.00 | 2.52 | R |
4889 | 6491 | 0.762418 | TTCTCCCTTTTGAGTCCGCA | 59.238 | 50.000 | 0.0 | 0.0 | 33.93 | 5.69 | R |
5904 | 7581 | 0.463620 | GGCTCGATCCTCTCTTTGCT | 59.536 | 55.000 | 0.0 | 0.0 | 0.00 | 3.91 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 2.964343 | AGACGAGGTGGAAGAGTCC | 58.036 | 57.895 | 0.00 | 0.00 | 45.21 | 3.85 |
19 | 20 | 0.406361 | AGACGAGGTGGAAGAGTCCT | 59.594 | 55.000 | 0.00 | 0.00 | 45.22 | 3.85 |
20 | 21 | 1.203075 | AGACGAGGTGGAAGAGTCCTT | 60.203 | 52.381 | 0.00 | 0.00 | 45.22 | 3.36 |
21 | 22 | 1.202817 | GACGAGGTGGAAGAGTCCTTC | 59.797 | 57.143 | 0.00 | 0.00 | 45.22 | 3.46 |
22 | 23 | 1.203075 | ACGAGGTGGAAGAGTCCTTCT | 60.203 | 52.381 | 0.00 | 0.00 | 46.16 | 2.85 |
23 | 24 | 1.474879 | CGAGGTGGAAGAGTCCTTCTC | 59.525 | 57.143 | 0.00 | 1.19 | 46.16 | 2.87 |
35 | 36 | 5.606348 | GAGTCCTTCTCTGAATACCATGT | 57.394 | 43.478 | 0.00 | 0.00 | 39.86 | 3.21 |
36 | 37 | 5.983540 | GAGTCCTTCTCTGAATACCATGTT | 58.016 | 41.667 | 0.00 | 0.00 | 39.86 | 2.71 |
37 | 38 | 5.738909 | AGTCCTTCTCTGAATACCATGTTG | 58.261 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
38 | 39 | 5.485353 | AGTCCTTCTCTGAATACCATGTTGA | 59.515 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
39 | 40 | 6.013379 | AGTCCTTCTCTGAATACCATGTTGAA | 60.013 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
40 | 41 | 6.825721 | GTCCTTCTCTGAATACCATGTTGAAT | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
41 | 42 | 7.987458 | GTCCTTCTCTGAATACCATGTTGAATA | 59.013 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
42 | 43 | 8.548025 | TCCTTCTCTGAATACCATGTTGAATAA | 58.452 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
43 | 44 | 9.347240 | CCTTCTCTGAATACCATGTTGAATAAT | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
53 | 54 | 6.810888 | CCATGTTGAATAATGGTTTAAGCG | 57.189 | 37.500 | 0.00 | 0.00 | 38.85 | 4.68 |
54 | 55 | 6.329496 | CCATGTTGAATAATGGTTTAAGCGT | 58.671 | 36.000 | 0.00 | 0.00 | 38.85 | 5.07 |
55 | 56 | 6.472163 | CCATGTTGAATAATGGTTTAAGCGTC | 59.528 | 38.462 | 0.00 | 0.00 | 38.85 | 5.19 |
56 | 57 | 6.811253 | TGTTGAATAATGGTTTAAGCGTCT | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
57 | 58 | 6.837992 | TGTTGAATAATGGTTTAAGCGTCTC | 58.162 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
58 | 59 | 6.428465 | TGTTGAATAATGGTTTAAGCGTCTCA | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
59 | 60 | 7.041030 | TGTTGAATAATGGTTTAAGCGTCTCAA | 60.041 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
60 | 61 | 7.624360 | TGAATAATGGTTTAAGCGTCTCAAT | 57.376 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
61 | 62 | 7.693952 | TGAATAATGGTTTAAGCGTCTCAATC | 58.306 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
62 | 63 | 7.335673 | TGAATAATGGTTTAAGCGTCTCAATCA | 59.664 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
63 | 64 | 4.946784 | ATGGTTTAAGCGTCTCAATCAC | 57.053 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
64 | 65 | 3.071479 | TGGTTTAAGCGTCTCAATCACC | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
65 | 66 | 2.093783 | GGTTTAAGCGTCTCAATCACCG | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
66 | 67 | 2.735134 | GTTTAAGCGTCTCAATCACCGT | 59.265 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
67 | 68 | 3.853831 | TTAAGCGTCTCAATCACCGTA | 57.146 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
68 | 69 | 2.736144 | AAGCGTCTCAATCACCGTAA | 57.264 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
69 | 70 | 1.992170 | AGCGTCTCAATCACCGTAAC | 58.008 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
70 | 71 | 1.271379 | AGCGTCTCAATCACCGTAACA | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
71 | 72 | 2.094182 | AGCGTCTCAATCACCGTAACAT | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
72 | 73 | 2.029244 | GCGTCTCAATCACCGTAACATG | 59.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
73 | 74 | 2.603110 | CGTCTCAATCACCGTAACATGG | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
74 | 75 | 2.351726 | GTCTCAATCACCGTAACATGGC | 59.648 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
75 | 76 | 1.327460 | CTCAATCACCGTAACATGGCG | 59.673 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
76 | 77 | 1.066787 | TCAATCACCGTAACATGGCGA | 60.067 | 47.619 | 0.00 | 0.00 | 0.00 | 5.54 |
77 | 78 | 1.062002 | CAATCACCGTAACATGGCGAC | 59.938 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
78 | 79 | 0.461339 | ATCACCGTAACATGGCGACC | 60.461 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
79 | 80 | 2.104253 | CACCGTAACATGGCGACCC | 61.104 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
80 | 81 | 2.888534 | CCGTAACATGGCGACCCG | 60.889 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
100 | 101 | 9.076596 | CGACCCGCATGTATATATATTGATATG | 57.923 | 37.037 | 0.00 | 0.00 | 30.57 | 1.78 |
102 | 103 | 9.929180 | ACCCGCATGTATATATATTGATATGAC | 57.071 | 33.333 | 0.00 | 0.00 | 30.57 | 3.06 |
124 | 125 | 3.928727 | TGTAGTACAAGAGTTCCGGTG | 57.071 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
125 | 126 | 2.559668 | TGTAGTACAAGAGTTCCGGTGG | 59.440 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
126 | 127 | 1.713297 | AGTACAAGAGTTCCGGTGGT | 58.287 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
127 | 128 | 2.044758 | AGTACAAGAGTTCCGGTGGTT | 58.955 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
128 | 129 | 3.233507 | AGTACAAGAGTTCCGGTGGTTA | 58.766 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
129 | 130 | 2.538512 | ACAAGAGTTCCGGTGGTTAC | 57.461 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
130 | 131 | 1.764134 | ACAAGAGTTCCGGTGGTTACA | 59.236 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
131 | 132 | 2.171027 | ACAAGAGTTCCGGTGGTTACAA | 59.829 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
132 | 133 | 3.181448 | ACAAGAGTTCCGGTGGTTACAAT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
133 | 134 | 3.329929 | AGAGTTCCGGTGGTTACAATC | 57.670 | 47.619 | 0.00 | 0.00 | 0.00 | 2.67 |
134 | 135 | 2.904434 | AGAGTTCCGGTGGTTACAATCT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
135 | 136 | 4.091549 | AGAGTTCCGGTGGTTACAATCTA | 58.908 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
136 | 137 | 4.529377 | AGAGTTCCGGTGGTTACAATCTAA | 59.471 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
137 | 138 | 4.572909 | AGTTCCGGTGGTTACAATCTAAC | 58.427 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
138 | 139 | 3.615224 | TCCGGTGGTTACAATCTAACC | 57.385 | 47.619 | 0.00 | 2.77 | 45.37 | 2.85 |
146 | 147 | 5.280654 | GGTTACAATCTAACCATACGGGA | 57.719 | 43.478 | 4.67 | 0.00 | 44.72 | 5.14 |
147 | 148 | 5.295152 | GGTTACAATCTAACCATACGGGAG | 58.705 | 45.833 | 4.67 | 0.00 | 44.72 | 4.30 |
148 | 149 | 5.069516 | GGTTACAATCTAACCATACGGGAGA | 59.930 | 44.000 | 4.67 | 0.00 | 44.72 | 3.71 |
149 | 150 | 4.939052 | ACAATCTAACCATACGGGAGAG | 57.061 | 45.455 | 0.00 | 0.00 | 41.15 | 3.20 |
150 | 151 | 4.543689 | ACAATCTAACCATACGGGAGAGA | 58.456 | 43.478 | 0.00 | 0.00 | 41.15 | 3.10 |
151 | 152 | 5.148502 | ACAATCTAACCATACGGGAGAGAT | 58.851 | 41.667 | 0.00 | 0.00 | 40.81 | 2.75 |
152 | 153 | 6.312529 | ACAATCTAACCATACGGGAGAGATA | 58.687 | 40.000 | 0.00 | 0.00 | 39.29 | 1.98 |
153 | 154 | 6.954684 | ACAATCTAACCATACGGGAGAGATAT | 59.045 | 38.462 | 0.00 | 0.00 | 39.29 | 1.63 |
154 | 155 | 8.114102 | ACAATCTAACCATACGGGAGAGATATA | 58.886 | 37.037 | 0.00 | 0.00 | 39.29 | 0.86 |
155 | 156 | 8.407064 | CAATCTAACCATACGGGAGAGATATAC | 58.593 | 40.741 | 0.00 | 0.00 | 39.29 | 1.47 |
156 | 157 | 7.024345 | TCTAACCATACGGGAGAGATATACA | 57.976 | 40.000 | 0.00 | 0.00 | 41.15 | 2.29 |
157 | 158 | 7.464273 | TCTAACCATACGGGAGAGATATACAA | 58.536 | 38.462 | 0.00 | 0.00 | 41.15 | 2.41 |
158 | 159 | 6.591750 | AACCATACGGGAGAGATATACAAG | 57.408 | 41.667 | 0.00 | 0.00 | 41.15 | 3.16 |
159 | 160 | 5.017490 | ACCATACGGGAGAGATATACAAGG | 58.983 | 45.833 | 0.00 | 0.00 | 41.15 | 3.61 |
160 | 161 | 4.402793 | CCATACGGGAGAGATATACAAGGG | 59.597 | 50.000 | 0.00 | 0.00 | 40.01 | 3.95 |
161 | 162 | 3.897657 | ACGGGAGAGATATACAAGGGA | 57.102 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
162 | 163 | 4.194678 | ACGGGAGAGATATACAAGGGAA | 57.805 | 45.455 | 0.00 | 0.00 | 0.00 | 3.97 |
163 | 164 | 4.153411 | ACGGGAGAGATATACAAGGGAAG | 58.847 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
164 | 165 | 3.511934 | CGGGAGAGATATACAAGGGAAGG | 59.488 | 52.174 | 0.00 | 0.00 | 0.00 | 3.46 |
165 | 166 | 4.753186 | GGGAGAGATATACAAGGGAAGGA | 58.247 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
166 | 167 | 4.775253 | GGGAGAGATATACAAGGGAAGGAG | 59.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
167 | 168 | 5.459831 | GGGAGAGATATACAAGGGAAGGAGA | 60.460 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
168 | 169 | 6.260663 | GGAGAGATATACAAGGGAAGGAGAT | 58.739 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
169 | 170 | 7.415086 | GGAGAGATATACAAGGGAAGGAGATA | 58.585 | 42.308 | 0.00 | 0.00 | 0.00 | 1.98 |
170 | 171 | 7.896496 | GGAGAGATATACAAGGGAAGGAGATAA | 59.104 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
171 | 172 | 8.893563 | AGAGATATACAAGGGAAGGAGATAAG | 57.106 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
172 | 173 | 7.898636 | AGAGATATACAAGGGAAGGAGATAAGG | 59.101 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
173 | 174 | 7.780822 | AGATATACAAGGGAAGGAGATAAGGA | 58.219 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
174 | 175 | 8.413821 | AGATATACAAGGGAAGGAGATAAGGAT | 58.586 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
175 | 176 | 9.716556 | GATATACAAGGGAAGGAGATAAGGATA | 57.283 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
176 | 177 | 9.722317 | ATATACAAGGGAAGGAGATAAGGATAG | 57.278 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
177 | 178 | 6.044411 | ACAAGGGAAGGAGATAAGGATAGA | 57.956 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
178 | 179 | 6.638953 | ACAAGGGAAGGAGATAAGGATAGAT | 58.361 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
179 | 180 | 7.085601 | ACAAGGGAAGGAGATAAGGATAGATT | 58.914 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
180 | 181 | 8.242325 | ACAAGGGAAGGAGATAAGGATAGATTA | 58.758 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
181 | 182 | 8.536175 | CAAGGGAAGGAGATAAGGATAGATTAC | 58.464 | 40.741 | 0.00 | 0.00 | 0.00 | 1.89 |
182 | 183 | 7.780822 | AGGGAAGGAGATAAGGATAGATTACA | 58.219 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
183 | 184 | 7.898636 | AGGGAAGGAGATAAGGATAGATTACAG | 59.101 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
184 | 185 | 7.896496 | GGGAAGGAGATAAGGATAGATTACAGA | 59.104 | 40.741 | 0.00 | 0.00 | 0.00 | 3.41 |
185 | 186 | 8.966868 | GGAAGGAGATAAGGATAGATTACAGAG | 58.033 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
186 | 187 | 9.747898 | GAAGGAGATAAGGATAGATTACAGAGA | 57.252 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
225 | 226 | 9.209175 | CTATCTCTTAACAATACCCTTGTATGC | 57.791 | 37.037 | 0.00 | 0.00 | 37.73 | 3.14 |
226 | 227 | 6.046593 | TCTCTTAACAATACCCTTGTATGCG | 58.953 | 40.000 | 0.00 | 0.00 | 37.73 | 4.73 |
227 | 228 | 4.573201 | TCTTAACAATACCCTTGTATGCGC | 59.427 | 41.667 | 0.00 | 0.00 | 37.73 | 6.09 |
228 | 229 | 2.710096 | ACAATACCCTTGTATGCGCT | 57.290 | 45.000 | 9.73 | 0.00 | 37.73 | 5.92 |
229 | 230 | 2.288666 | ACAATACCCTTGTATGCGCTG | 58.711 | 47.619 | 9.73 | 0.00 | 37.73 | 5.18 |
230 | 231 | 2.093181 | ACAATACCCTTGTATGCGCTGA | 60.093 | 45.455 | 9.73 | 0.00 | 37.73 | 4.26 |
231 | 232 | 3.141398 | CAATACCCTTGTATGCGCTGAT | 58.859 | 45.455 | 9.73 | 0.00 | 37.73 | 2.90 |
232 | 233 | 4.202315 | ACAATACCCTTGTATGCGCTGATA | 60.202 | 41.667 | 9.73 | 0.00 | 37.73 | 2.15 |
233 | 234 | 4.826274 | ATACCCTTGTATGCGCTGATAT | 57.174 | 40.909 | 9.73 | 0.00 | 36.32 | 1.63 |
234 | 235 | 2.771089 | ACCCTTGTATGCGCTGATATG | 58.229 | 47.619 | 9.73 | 0.00 | 0.00 | 1.78 |
235 | 236 | 2.368548 | ACCCTTGTATGCGCTGATATGA | 59.631 | 45.455 | 9.73 | 0.00 | 0.00 | 2.15 |
236 | 237 | 3.008375 | ACCCTTGTATGCGCTGATATGAT | 59.992 | 43.478 | 9.73 | 0.00 | 0.00 | 2.45 |
237 | 238 | 3.373130 | CCCTTGTATGCGCTGATATGATG | 59.627 | 47.826 | 9.73 | 0.00 | 0.00 | 3.07 |
238 | 239 | 3.373130 | CCTTGTATGCGCTGATATGATGG | 59.627 | 47.826 | 9.73 | 0.00 | 0.00 | 3.51 |
239 | 240 | 2.349590 | TGTATGCGCTGATATGATGGC | 58.650 | 47.619 | 9.73 | 0.00 | 0.00 | 4.40 |
240 | 241 | 2.027837 | TGTATGCGCTGATATGATGGCT | 60.028 | 45.455 | 9.73 | 0.00 | 0.00 | 4.75 |
241 | 242 | 1.450025 | ATGCGCTGATATGATGGCTG | 58.550 | 50.000 | 9.73 | 0.00 | 0.00 | 4.85 |
242 | 243 | 0.604511 | TGCGCTGATATGATGGCTGG | 60.605 | 55.000 | 9.73 | 0.00 | 0.00 | 4.85 |
243 | 244 | 0.604780 | GCGCTGATATGATGGCTGGT | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
244 | 245 | 1.888215 | CGCTGATATGATGGCTGGTT | 58.112 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
245 | 246 | 2.871637 | GCGCTGATATGATGGCTGGTTA | 60.872 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
246 | 247 | 2.998670 | CGCTGATATGATGGCTGGTTAG | 59.001 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
330 | 331 | 3.433306 | TGCGGGGAATATAAATGGGAG | 57.567 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
331 | 332 | 2.092323 | GCGGGGAATATAAATGGGAGC | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
483 | 486 | 1.882623 | GCAAACTGAAGAGACCAAGGG | 59.117 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
514 | 517 | 0.443869 | CTGGAAACTGGATGAACGCG | 59.556 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
548 | 551 | 4.927782 | TCGCCCATATGCACGCCC | 62.928 | 66.667 | 9.90 | 0.00 | 0.00 | 6.13 |
630 | 1973 | 3.053896 | GGCCCACGCACCACTAAC | 61.054 | 66.667 | 0.00 | 0.00 | 36.38 | 2.34 |
632 | 1975 | 2.428187 | CCCACGCACCACTAACCA | 59.572 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
640 | 1991 | 0.110486 | CACCACTAACCACAGGGCTT | 59.890 | 55.000 | 0.00 | 0.00 | 37.90 | 4.35 |
643 | 1994 | 1.074951 | ACTAACCACAGGGCTTGGC | 59.925 | 57.895 | 0.44 | 0.00 | 37.69 | 4.52 |
730 | 2094 | 4.400961 | ACCGCTGCTCTTGCCCTC | 62.401 | 66.667 | 0.00 | 0.00 | 38.71 | 4.30 |
857 | 2221 | 2.765785 | CGCGACGCTTCTTCTGTG | 59.234 | 61.111 | 19.02 | 0.00 | 0.00 | 3.66 |
859 | 2223 | 1.488957 | GCGACGCTTCTTCTGTGTG | 59.511 | 57.895 | 13.73 | 0.00 | 0.00 | 3.82 |
860 | 2224 | 0.939577 | GCGACGCTTCTTCTGTGTGA | 60.940 | 55.000 | 13.73 | 0.00 | 0.00 | 3.58 |
861 | 2225 | 1.702886 | CGACGCTTCTTCTGTGTGAT | 58.297 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
862 | 2226 | 1.388093 | CGACGCTTCTTCTGTGTGATG | 59.612 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
864 | 2228 | 1.270518 | ACGCTTCTTCTGTGTGATGCT | 60.271 | 47.619 | 0.00 | 0.00 | 33.14 | 3.79 |
865 | 2229 | 1.802960 | CGCTTCTTCTGTGTGATGCTT | 59.197 | 47.619 | 0.00 | 0.00 | 33.14 | 3.91 |
867 | 2231 | 3.562505 | GCTTCTTCTGTGTGATGCTTTG | 58.437 | 45.455 | 0.00 | 0.00 | 32.74 | 2.77 |
869 | 2233 | 4.214119 | GCTTCTTCTGTGTGATGCTTTGTA | 59.786 | 41.667 | 0.00 | 0.00 | 32.74 | 2.41 |
910 | 2351 | 0.250038 | CCATCGGCTCCCATACTGTG | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
912 | 2353 | 0.465705 | ATCGGCTCCCATACTGTGTG | 59.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
929 | 2370 | 5.942236 | ACTGTGTGATGCTTTCATATGAGTT | 59.058 | 36.000 | 5.39 | 0.00 | 36.54 | 3.01 |
930 | 2371 | 7.105588 | ACTGTGTGATGCTTTCATATGAGTTA | 58.894 | 34.615 | 5.39 | 0.00 | 36.54 | 2.24 |
999 | 2440 | 1.228245 | TGCCAACAGCTCAACTCCC | 60.228 | 57.895 | 0.00 | 0.00 | 44.23 | 4.30 |
1000 | 2441 | 1.228245 | GCCAACAGCTCAACTCCCA | 60.228 | 57.895 | 0.00 | 0.00 | 38.99 | 4.37 |
1001 | 2442 | 0.610232 | GCCAACAGCTCAACTCCCAT | 60.610 | 55.000 | 0.00 | 0.00 | 38.99 | 4.00 |
1002 | 2443 | 1.171308 | CCAACAGCTCAACTCCCATG | 58.829 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1003 | 2444 | 1.171308 | CAACAGCTCAACTCCCATGG | 58.829 | 55.000 | 4.14 | 4.14 | 0.00 | 3.66 |
1004 | 2445 | 0.610232 | AACAGCTCAACTCCCATGGC | 60.610 | 55.000 | 6.09 | 0.00 | 0.00 | 4.40 |
1005 | 2446 | 1.001764 | CAGCTCAACTCCCATGGCA | 60.002 | 57.895 | 6.09 | 0.00 | 0.00 | 4.92 |
1006 | 2447 | 1.030488 | CAGCTCAACTCCCATGGCAG | 61.030 | 60.000 | 6.09 | 2.72 | 0.00 | 4.85 |
1007 | 2448 | 2.413142 | GCTCAACTCCCATGGCAGC | 61.413 | 63.158 | 6.09 | 2.37 | 0.00 | 5.25 |
1008 | 2449 | 2.046023 | TCAACTCCCATGGCAGCG | 60.046 | 61.111 | 6.09 | 0.00 | 0.00 | 5.18 |
1009 | 2450 | 3.136123 | CAACTCCCATGGCAGCGG | 61.136 | 66.667 | 6.09 | 0.00 | 0.00 | 5.52 |
1086 | 2539 | 3.782443 | GACCCGGCCTTCGTCCAT | 61.782 | 66.667 | 0.00 | 0.00 | 37.11 | 3.41 |
1142 | 2595 | 1.272490 | GTGAGCCGAATCGATCCCATA | 59.728 | 52.381 | 3.36 | 0.00 | 0.00 | 2.74 |
1173 | 2626 | 1.571460 | CGCATCGCCAGAAATAGCC | 59.429 | 57.895 | 0.00 | 0.00 | 0.00 | 3.93 |
1174 | 2627 | 1.159713 | CGCATCGCCAGAAATAGCCA | 61.160 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1198 | 2651 | 2.104331 | CATCTCTAACCGGCGCGT | 59.896 | 61.111 | 8.43 | 0.00 | 0.00 | 6.01 |
1269 | 2722 | 2.671177 | CGAGGCCTGCAACAACTCG | 61.671 | 63.158 | 12.00 | 13.03 | 43.85 | 4.18 |
1320 | 2773 | 3.003763 | GGAGCGGTGAGGTTCCCT | 61.004 | 66.667 | 0.00 | 0.00 | 36.03 | 4.20 |
1324 | 2777 | 0.250770 | AGCGGTGAGGTTCCCTTTTC | 60.251 | 55.000 | 0.00 | 0.00 | 31.76 | 2.29 |
1327 | 2782 | 1.610886 | CGGTGAGGTTCCCTTTTCTCC | 60.611 | 57.143 | 0.00 | 0.00 | 31.76 | 3.71 |
1349 | 2804 | 1.608283 | CCCTTTCCTGACTCACCGAAC | 60.608 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
1360 | 2815 | 3.550974 | ACCGAACTGCAGGTGTCT | 58.449 | 55.556 | 19.93 | 0.00 | 39.66 | 3.41 |
1458 | 2913 | 7.881232 | TGTTTTATTTCTTTACAGGTCCTCGAT | 59.119 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
1469 | 2924 | 1.344763 | GGTCCTCGATATGGTTCTGGG | 59.655 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
1525 | 2980 | 3.008485 | TGTGGTATGGCTACAATGTGTCA | 59.992 | 43.478 | 0.00 | 0.00 | 35.58 | 3.58 |
1553 | 3008 | 7.195646 | ACAAATGTGCCTGATTAATCATTACG | 58.804 | 34.615 | 18.26 | 6.99 | 36.02 | 3.18 |
1641 | 3096 | 6.162777 | GTGTTCTCAAATCTACTGCTCTCTT | 58.837 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1790 | 3245 | 0.685097 | AGGTTAGCACTTCCGCTGAA | 59.315 | 50.000 | 0.00 | 0.00 | 43.68 | 3.02 |
1804 | 3259 | 5.213891 | TCCGCTGAATATATCAAAGCTCA | 57.786 | 39.130 | 10.69 | 0.00 | 37.67 | 4.26 |
1844 | 3299 | 3.016474 | GCACCTTCTCAACTCGCGC | 62.016 | 63.158 | 0.00 | 0.00 | 0.00 | 6.86 |
1846 | 3301 | 2.815647 | CCTTCTCAACTCGCGCCC | 60.816 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1854 | 3309 | 3.927163 | AACTCGCGCCCGTTACTGG | 62.927 | 63.158 | 0.00 | 0.00 | 35.54 | 4.00 |
1876 | 3377 | 4.202243 | GGGCCATGCTGATATTTTTGCTAA | 60.202 | 41.667 | 4.39 | 0.00 | 0.00 | 3.09 |
1877 | 3378 | 4.746611 | GGCCATGCTGATATTTTTGCTAAC | 59.253 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
2014 | 3518 | 4.591321 | TTCAAATGGGCTGAAGGTAGAT | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
2092 | 3596 | 3.581755 | TGTTACGGTCAGTACTGCATTC | 58.418 | 45.455 | 18.45 | 8.08 | 35.17 | 2.67 |
2293 | 3797 | 0.464036 | TGCCTTGTGCTCCTATACCG | 59.536 | 55.000 | 0.00 | 0.00 | 42.00 | 4.02 |
2310 | 3814 | 2.014128 | ACCGCATTTAACTCCCAATCG | 58.986 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
2356 | 3861 | 5.574055 | AGCTGCATTAATTTTCACACGAATG | 59.426 | 36.000 | 1.02 | 0.00 | 0.00 | 2.67 |
2408 | 3913 | 7.039504 | ACAGAAAAGGTCATAACATGCTTTCAT | 60.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2637 | 4143 | 9.877178 | ACTATTTCTTATGAGTCGATTTCTTGT | 57.123 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2662 | 4168 | 2.025898 | TGTATGGATGCACAATGCTGG | 58.974 | 47.619 | 2.02 | 0.00 | 45.31 | 4.85 |
2725 | 4231 | 5.593968 | TGGTGTAATAGTAGCCATTGTACG | 58.406 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2786 | 4292 | 0.449388 | GCGCTGAAGTTGGATTGAGG | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2788 | 4294 | 2.935238 | GCGCTGAAGTTGGATTGAGGTA | 60.935 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2789 | 4295 | 2.673368 | CGCTGAAGTTGGATTGAGGTAC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2796 | 4302 | 5.359194 | AGTTGGATTGAGGTACCATGTAG | 57.641 | 43.478 | 15.94 | 0.00 | 33.56 | 2.74 |
2861 | 4367 | 7.504911 | AGGAGGATTGAAGTGGATCATAATTTG | 59.495 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
2913 | 4419 | 3.088532 | TGCAATTTCCTTTATCCGCAGT | 58.911 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
3415 | 4937 | 6.553857 | TCTGGTCTCTTAAGAGTAAGGTCTT | 58.446 | 40.000 | 27.59 | 0.00 | 42.60 | 3.01 |
3504 | 5028 | 6.686630 | AGAGTGAGCAGAACTGTATATATGC | 58.313 | 40.000 | 3.77 | 0.00 | 0.00 | 3.14 |
3556 | 5080 | 5.197451 | AGGCATATTTCCGTTGTTCCATTA | 58.803 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
4069 | 5645 | 8.054152 | TGTACTTACCATGATTTAGTACGACA | 57.946 | 34.615 | 13.99 | 3.18 | 42.42 | 4.35 |
4191 | 5767 | 7.907389 | TGGACTAATCATTCTTCACACTAGTT | 58.093 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4225 | 5801 | 6.659824 | ACGGTGATTATAGATGGAAAAGGTT | 58.340 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4282 | 5858 | 4.288626 | TGGAATGGTACTTAGCAAAGAGGT | 59.711 | 41.667 | 0.00 | 0.00 | 37.24 | 3.85 |
4447 | 6049 | 4.012374 | CCCTGAGCTTGCTCTCATTTTTA | 58.988 | 43.478 | 21.17 | 0.37 | 41.73 | 1.52 |
4653 | 6255 | 1.138568 | CCTCCCTTCATGATCAGCCT | 58.861 | 55.000 | 0.09 | 0.00 | 0.00 | 4.58 |
4656 | 6258 | 3.495806 | CCTCCCTTCATGATCAGCCTTAC | 60.496 | 52.174 | 0.09 | 0.00 | 0.00 | 2.34 |
4889 | 6491 | 2.271800 | GATCGCGAGTTGATCACCTTT | 58.728 | 47.619 | 16.66 | 0.00 | 41.48 | 3.11 |
5018 | 6632 | 5.742453 | CGTACGTGCAACTATTTATCTCTGT | 59.258 | 40.000 | 7.22 | 0.00 | 31.75 | 3.41 |
5021 | 6635 | 6.398918 | ACGTGCAACTATTTATCTCTGTTCT | 58.601 | 36.000 | 0.00 | 0.00 | 31.75 | 3.01 |
5024 | 6638 | 5.586243 | TGCAACTATTTATCTCTGTTCTGCC | 59.414 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5032 | 6646 | 0.809385 | CTCTGTTCTGCCTGGCATTG | 59.191 | 55.000 | 23.64 | 11.95 | 38.13 | 2.82 |
5033 | 6647 | 1.214589 | CTGTTCTGCCTGGCATTGC | 59.785 | 57.895 | 23.64 | 14.78 | 38.13 | 3.56 |
5044 | 6658 | 3.514645 | CCTGGCATTGCTTATTCACAAC | 58.485 | 45.455 | 8.82 | 0.00 | 0.00 | 3.32 |
5048 | 6662 | 3.307782 | GGCATTGCTTATTCACAACATGC | 59.692 | 43.478 | 8.82 | 0.00 | 33.22 | 4.06 |
5067 | 6681 | 2.225467 | GCAGAGATTAATGGGCTGTCC | 58.775 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
5076 | 6690 | 2.048601 | TGGGCTGTCCACATTTTGC | 58.951 | 52.632 | 0.00 | 0.00 | 41.46 | 3.68 |
5154 | 6769 | 8.459911 | TGACCGTGAAAGATATATGTAGAAGA | 57.540 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
5155 | 6770 | 8.568794 | TGACCGTGAAAGATATATGTAGAAGAG | 58.431 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
5156 | 6771 | 7.887381 | ACCGTGAAAGATATATGTAGAAGAGG | 58.113 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
5185 | 6801 | 0.317020 | GTTTGCTGAACTGTGACGCC | 60.317 | 55.000 | 0.00 | 0.00 | 35.31 | 5.68 |
5239 | 6858 | 5.989551 | AAGCTGCAAAATTACAAACTTGG | 57.010 | 34.783 | 1.02 | 0.00 | 0.00 | 3.61 |
5243 | 6862 | 5.000012 | TGCAAAATTACAAACTTGGACGT | 58.000 | 34.783 | 0.00 | 0.00 | 0.00 | 4.34 |
5257 | 6876 | 1.202348 | TGGACGTGTAGACTGATGCAG | 59.798 | 52.381 | 0.00 | 0.00 | 37.52 | 4.41 |
5260 | 6879 | 1.275505 | CGTGTAGACTGATGCAGCAG | 58.724 | 55.000 | 29.47 | 29.47 | 41.63 | 4.24 |
5303 | 6945 | 2.467838 | CAGCGATCATGTGAGGTAGTG | 58.532 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
5305 | 6947 | 1.539065 | GCGATCATGTGAGGTAGTGGG | 60.539 | 57.143 | 0.00 | 0.00 | 0.00 | 4.61 |
5306 | 6948 | 1.757118 | CGATCATGTGAGGTAGTGGGT | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
5326 | 6977 | 1.265568 | GTGCTTCATCAATTGCTGCG | 58.734 | 50.000 | 4.37 | 0.12 | 0.00 | 5.18 |
5330 | 6981 | 2.727777 | CTTCATCAATTGCTGCGGATG | 58.272 | 47.619 | 4.37 | 13.65 | 38.73 | 3.51 |
5331 | 6982 | 1.026584 | TCATCAATTGCTGCGGATGG | 58.973 | 50.000 | 17.34 | 4.39 | 38.11 | 3.51 |
5366 | 7018 | 4.764172 | TGTAAAATTGCAGCAAACTTGGT | 58.236 | 34.783 | 12.97 | 0.00 | 39.91 | 3.67 |
5374 | 7026 | 2.650608 | CAGCAAACTTGGTCGTTAAGC | 58.349 | 47.619 | 0.00 | 0.00 | 36.65 | 3.09 |
5446 | 7099 | 4.398988 | TCACTTCATTAATGTGGGTCATGC | 59.601 | 41.667 | 14.97 | 0.00 | 36.81 | 4.06 |
5572 | 7233 | 3.428413 | AGTAATTACCACCGCCACTTT | 57.572 | 42.857 | 12.05 | 0.00 | 0.00 | 2.66 |
5638 | 7299 | 2.066262 | CCAGCAAAGGTGTAGTACGTG | 58.934 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
5639 | 7300 | 1.459592 | CAGCAAAGGTGTAGTACGTGC | 59.540 | 52.381 | 0.00 | 0.00 | 34.37 | 5.34 |
5640 | 7301 | 0.794473 | GCAAAGGTGTAGTACGTGCC | 59.206 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
5641 | 7302 | 1.874739 | GCAAAGGTGTAGTACGTGCCA | 60.875 | 52.381 | 0.00 | 0.00 | 0.00 | 4.92 |
5642 | 7303 | 1.796459 | CAAAGGTGTAGTACGTGCCAC | 59.204 | 52.381 | 0.00 | 0.88 | 0.00 | 5.01 |
5716 | 7377 | 1.302366 | ACCACGCATGCTATGTCATG | 58.698 | 50.000 | 17.13 | 0.00 | 44.93 | 3.07 |
5723 | 7384 | 2.159037 | GCATGCTATGTCATGTCCATCG | 59.841 | 50.000 | 11.37 | 1.06 | 44.20 | 3.84 |
5801 | 7474 | 1.443802 | CGAGGTTGCTTCCTTCCTTC | 58.556 | 55.000 | 2.13 | 0.00 | 38.02 | 3.46 |
5811 | 7484 | 1.529744 | TCCTTCCTTCCTTTGGTGGT | 58.470 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
5829 | 7504 | 2.412421 | GTAGTATTCGTGCTACCCGG | 57.588 | 55.000 | 0.00 | 0.00 | 33.41 | 5.73 |
5830 | 7505 | 1.678101 | GTAGTATTCGTGCTACCCGGT | 59.322 | 52.381 | 0.00 | 0.00 | 33.41 | 5.28 |
5831 | 7506 | 2.057137 | AGTATTCGTGCTACCCGGTA | 57.943 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5902 | 7579 | 3.594134 | AGATTGTGCGGAGAAGAAGAAG | 58.406 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
5903 | 7580 | 3.259374 | AGATTGTGCGGAGAAGAAGAAGA | 59.741 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
5904 | 7581 | 3.469008 | TTGTGCGGAGAAGAAGAAGAA | 57.531 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
5908 | 7585 | 2.224281 | TGCGGAGAAGAAGAAGAAGCAA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
5922 | 7599 | 2.159114 | AGAAGCAAAGAGAGGATCGAGC | 60.159 | 50.000 | 0.00 | 0.00 | 42.67 | 5.03 |
6132 | 7813 | 2.854736 | AAATTCCCCATCTCCCCTTG | 57.145 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
6133 | 7814 | 1.698874 | AATTCCCCATCTCCCCTTGT | 58.301 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6138 | 7819 | 1.565390 | CCCATCTCCCCTTGTGAGCA | 61.565 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.406361 | AGGACTCTTCCACCTCGTCT | 59.594 | 55.000 | 0.00 | 0.00 | 45.72 | 4.18 |
1 | 2 | 1.202817 | GAAGGACTCTTCCACCTCGTC | 59.797 | 57.143 | 0.00 | 0.00 | 45.72 | 4.20 |
2 | 3 | 1.258676 | GAAGGACTCTTCCACCTCGT | 58.741 | 55.000 | 0.00 | 0.00 | 45.72 | 4.18 |
13 | 14 | 5.606348 | ACATGGTATTCAGAGAAGGACTC | 57.394 | 43.478 | 0.00 | 0.00 | 45.22 | 3.36 |
14 | 15 | 5.485353 | TCAACATGGTATTCAGAGAAGGACT | 59.515 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
15 | 16 | 5.734720 | TCAACATGGTATTCAGAGAAGGAC | 58.265 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
16 | 17 | 6.373005 | TTCAACATGGTATTCAGAGAAGGA | 57.627 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
17 | 18 | 8.737168 | TTATTCAACATGGTATTCAGAGAAGG | 57.263 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
19 | 20 | 9.123902 | CCATTATTCAACATGGTATTCAGAGAA | 57.876 | 33.333 | 0.00 | 0.00 | 36.01 | 2.87 |
20 | 21 | 8.681486 | CCATTATTCAACATGGTATTCAGAGA | 57.319 | 34.615 | 0.00 | 0.00 | 36.01 | 3.10 |
30 | 31 | 6.329496 | ACGCTTAAACCATTATTCAACATGG | 58.671 | 36.000 | 0.00 | 0.00 | 45.01 | 3.66 |
31 | 32 | 7.250569 | AGACGCTTAAACCATTATTCAACATG | 58.749 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
32 | 33 | 7.120579 | TGAGACGCTTAAACCATTATTCAACAT | 59.879 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
33 | 34 | 6.428465 | TGAGACGCTTAAACCATTATTCAACA | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
34 | 35 | 6.837992 | TGAGACGCTTAAACCATTATTCAAC | 58.162 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
35 | 36 | 7.441890 | TTGAGACGCTTAAACCATTATTCAA | 57.558 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
36 | 37 | 7.335673 | TGATTGAGACGCTTAAACCATTATTCA | 59.664 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
37 | 38 | 7.640240 | GTGATTGAGACGCTTAAACCATTATTC | 59.360 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
38 | 39 | 7.415206 | GGTGATTGAGACGCTTAAACCATTATT | 60.415 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
39 | 40 | 6.038271 | GGTGATTGAGACGCTTAAACCATTAT | 59.962 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
40 | 41 | 5.353123 | GGTGATTGAGACGCTTAAACCATTA | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
41 | 42 | 4.156008 | GGTGATTGAGACGCTTAAACCATT | 59.844 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
42 | 43 | 3.689649 | GGTGATTGAGACGCTTAAACCAT | 59.310 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
43 | 44 | 3.071479 | GGTGATTGAGACGCTTAAACCA | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
44 | 45 | 2.093783 | CGGTGATTGAGACGCTTAAACC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
45 | 46 | 2.735134 | ACGGTGATTGAGACGCTTAAAC | 59.265 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
46 | 47 | 3.034721 | ACGGTGATTGAGACGCTTAAA | 57.965 | 42.857 | 0.00 | 0.00 | 0.00 | 1.52 |
47 | 48 | 2.736144 | ACGGTGATTGAGACGCTTAA | 57.264 | 45.000 | 0.00 | 0.00 | 0.00 | 1.85 |
48 | 49 | 3.057386 | TGTTACGGTGATTGAGACGCTTA | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
49 | 50 | 2.288579 | TGTTACGGTGATTGAGACGCTT | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 4.68 |
50 | 51 | 1.271379 | TGTTACGGTGATTGAGACGCT | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
51 | 52 | 1.705256 | TGTTACGGTGATTGAGACGC | 58.295 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
52 | 53 | 2.603110 | CCATGTTACGGTGATTGAGACG | 59.397 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
53 | 54 | 2.351726 | GCCATGTTACGGTGATTGAGAC | 59.648 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
54 | 55 | 2.627945 | GCCATGTTACGGTGATTGAGA | 58.372 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
55 | 56 | 1.327460 | CGCCATGTTACGGTGATTGAG | 59.673 | 52.381 | 0.00 | 0.00 | 36.02 | 3.02 |
56 | 57 | 1.066787 | TCGCCATGTTACGGTGATTGA | 60.067 | 47.619 | 0.00 | 0.00 | 38.12 | 2.57 |
57 | 58 | 1.062002 | GTCGCCATGTTACGGTGATTG | 59.938 | 52.381 | 0.00 | 0.00 | 44.50 | 2.67 |
58 | 59 | 1.365699 | GTCGCCATGTTACGGTGATT | 58.634 | 50.000 | 0.00 | 0.00 | 44.50 | 2.57 |
59 | 60 | 0.461339 | GGTCGCCATGTTACGGTGAT | 60.461 | 55.000 | 0.00 | 0.00 | 44.50 | 3.06 |
60 | 61 | 1.079681 | GGTCGCCATGTTACGGTGA | 60.080 | 57.895 | 0.00 | 0.00 | 40.71 | 4.02 |
61 | 62 | 2.104253 | GGGTCGCCATGTTACGGTG | 61.104 | 63.158 | 0.00 | 0.00 | 35.24 | 4.94 |
62 | 63 | 2.266689 | GGGTCGCCATGTTACGGT | 59.733 | 61.111 | 0.00 | 0.00 | 0.00 | 4.83 |
63 | 64 | 2.888534 | CGGGTCGCCATGTTACGG | 60.889 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
74 | 75 | 9.076596 | CATATCAATATATATACATGCGGGTCG | 57.923 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
76 | 77 | 9.929180 | GTCATATCAATATATATACATGCGGGT | 57.071 | 33.333 | 0.00 | 0.00 | 0.00 | 5.28 |
103 | 104 | 3.006110 | CCACCGGAACTCTTGTACTACAA | 59.994 | 47.826 | 9.46 | 1.67 | 36.54 | 2.41 |
104 | 105 | 2.559668 | CCACCGGAACTCTTGTACTACA | 59.440 | 50.000 | 9.46 | 0.00 | 0.00 | 2.74 |
105 | 106 | 2.560105 | ACCACCGGAACTCTTGTACTAC | 59.440 | 50.000 | 9.46 | 0.00 | 0.00 | 2.73 |
106 | 107 | 2.880443 | ACCACCGGAACTCTTGTACTA | 58.120 | 47.619 | 9.46 | 0.00 | 0.00 | 1.82 |
107 | 108 | 1.713297 | ACCACCGGAACTCTTGTACT | 58.287 | 50.000 | 9.46 | 0.00 | 0.00 | 2.73 |
108 | 109 | 2.538512 | AACCACCGGAACTCTTGTAC | 57.461 | 50.000 | 9.46 | 0.00 | 0.00 | 2.90 |
109 | 110 | 2.964464 | TGTAACCACCGGAACTCTTGTA | 59.036 | 45.455 | 9.46 | 0.00 | 0.00 | 2.41 |
110 | 111 | 1.764134 | TGTAACCACCGGAACTCTTGT | 59.236 | 47.619 | 9.46 | 0.00 | 0.00 | 3.16 |
111 | 112 | 2.536761 | TGTAACCACCGGAACTCTTG | 57.463 | 50.000 | 9.46 | 0.00 | 0.00 | 3.02 |
112 | 113 | 3.326880 | AGATTGTAACCACCGGAACTCTT | 59.673 | 43.478 | 9.46 | 0.00 | 0.00 | 2.85 |
113 | 114 | 2.904434 | AGATTGTAACCACCGGAACTCT | 59.096 | 45.455 | 9.46 | 0.00 | 0.00 | 3.24 |
114 | 115 | 3.329929 | AGATTGTAACCACCGGAACTC | 57.670 | 47.619 | 9.46 | 0.00 | 0.00 | 3.01 |
115 | 116 | 4.564199 | GGTTAGATTGTAACCACCGGAACT | 60.564 | 45.833 | 9.46 | 0.00 | 44.72 | 3.01 |
116 | 117 | 3.686241 | GGTTAGATTGTAACCACCGGAAC | 59.314 | 47.826 | 9.46 | 0.00 | 44.72 | 3.62 |
117 | 118 | 3.941573 | GGTTAGATTGTAACCACCGGAA | 58.058 | 45.455 | 9.46 | 0.00 | 44.72 | 4.30 |
118 | 119 | 3.615224 | GGTTAGATTGTAACCACCGGA | 57.385 | 47.619 | 9.46 | 0.00 | 44.72 | 5.14 |
124 | 125 | 5.069516 | TCTCCCGTATGGTTAGATTGTAACC | 59.930 | 44.000 | 14.30 | 14.30 | 45.37 | 2.85 |
125 | 126 | 6.040166 | TCTCTCCCGTATGGTTAGATTGTAAC | 59.960 | 42.308 | 0.00 | 0.00 | 34.77 | 2.50 |
126 | 127 | 6.131264 | TCTCTCCCGTATGGTTAGATTGTAA | 58.869 | 40.000 | 0.00 | 0.00 | 34.77 | 2.41 |
127 | 128 | 5.698104 | TCTCTCCCGTATGGTTAGATTGTA | 58.302 | 41.667 | 0.00 | 0.00 | 34.77 | 2.41 |
128 | 129 | 4.543689 | TCTCTCCCGTATGGTTAGATTGT | 58.456 | 43.478 | 0.00 | 0.00 | 34.77 | 2.71 |
129 | 130 | 5.730296 | ATCTCTCCCGTATGGTTAGATTG | 57.270 | 43.478 | 0.00 | 0.00 | 34.86 | 2.67 |
130 | 131 | 8.114102 | TGTATATCTCTCCCGTATGGTTAGATT | 58.886 | 37.037 | 12.62 | 4.42 | 37.63 | 2.40 |
131 | 132 | 7.640313 | TGTATATCTCTCCCGTATGGTTAGAT | 58.360 | 38.462 | 12.22 | 12.22 | 38.95 | 1.98 |
132 | 133 | 7.024345 | TGTATATCTCTCCCGTATGGTTAGA | 57.976 | 40.000 | 0.00 | 1.92 | 34.77 | 2.10 |
133 | 134 | 7.148052 | CCTTGTATATCTCTCCCGTATGGTTAG | 60.148 | 44.444 | 0.00 | 0.00 | 34.77 | 2.34 |
134 | 135 | 6.662234 | CCTTGTATATCTCTCCCGTATGGTTA | 59.338 | 42.308 | 0.00 | 0.00 | 34.77 | 2.85 |
135 | 136 | 5.480772 | CCTTGTATATCTCTCCCGTATGGTT | 59.519 | 44.000 | 0.00 | 0.00 | 34.77 | 3.67 |
136 | 137 | 5.017490 | CCTTGTATATCTCTCCCGTATGGT | 58.983 | 45.833 | 0.00 | 0.00 | 34.77 | 3.55 |
137 | 138 | 4.402793 | CCCTTGTATATCTCTCCCGTATGG | 59.597 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
138 | 139 | 5.262009 | TCCCTTGTATATCTCTCCCGTATG | 58.738 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
139 | 140 | 5.531753 | TCCCTTGTATATCTCTCCCGTAT | 57.468 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
140 | 141 | 5.322754 | CTTCCCTTGTATATCTCTCCCGTA | 58.677 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
141 | 142 | 3.897657 | TCCCTTGTATATCTCTCCCGT | 57.102 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
142 | 143 | 3.511934 | CCTTCCCTTGTATATCTCTCCCG | 59.488 | 52.174 | 0.00 | 0.00 | 0.00 | 5.14 |
143 | 144 | 4.753186 | TCCTTCCCTTGTATATCTCTCCC | 58.247 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
144 | 145 | 5.646215 | TCTCCTTCCCTTGTATATCTCTCC | 58.354 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
145 | 146 | 8.887264 | TTATCTCCTTCCCTTGTATATCTCTC | 57.113 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
146 | 147 | 7.898636 | CCTTATCTCCTTCCCTTGTATATCTCT | 59.101 | 40.741 | 0.00 | 0.00 | 0.00 | 3.10 |
147 | 148 | 7.896496 | TCCTTATCTCCTTCCCTTGTATATCTC | 59.104 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
148 | 149 | 7.780822 | TCCTTATCTCCTTCCCTTGTATATCT | 58.219 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
149 | 150 | 8.616799 | ATCCTTATCTCCTTCCCTTGTATATC | 57.383 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
150 | 151 | 9.722317 | CTATCCTTATCTCCTTCCCTTGTATAT | 57.278 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
151 | 152 | 8.912285 | TCTATCCTTATCTCCTTCCCTTGTATA | 58.088 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
152 | 153 | 7.780822 | TCTATCCTTATCTCCTTCCCTTGTAT | 58.219 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
153 | 154 | 7.175635 | TCTATCCTTATCTCCTTCCCTTGTA | 57.824 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
154 | 155 | 6.044411 | TCTATCCTTATCTCCTTCCCTTGT | 57.956 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
155 | 156 | 7.566658 | AATCTATCCTTATCTCCTTCCCTTG | 57.433 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
156 | 157 | 8.242325 | TGTAATCTATCCTTATCTCCTTCCCTT | 58.758 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
157 | 158 | 7.780822 | TGTAATCTATCCTTATCTCCTTCCCT | 58.219 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
158 | 159 | 7.896496 | TCTGTAATCTATCCTTATCTCCTTCCC | 59.104 | 40.741 | 0.00 | 0.00 | 0.00 | 3.97 |
159 | 160 | 8.887264 | TCTGTAATCTATCCTTATCTCCTTCC | 57.113 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
160 | 161 | 9.747898 | TCTCTGTAATCTATCCTTATCTCCTTC | 57.252 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
199 | 200 | 9.209175 | GCATACAAGGGTATTGTTAAGAGATAG | 57.791 | 37.037 | 0.00 | 0.00 | 38.14 | 2.08 |
200 | 201 | 7.870954 | CGCATACAAGGGTATTGTTAAGAGATA | 59.129 | 37.037 | 0.00 | 0.00 | 38.14 | 1.98 |
201 | 202 | 6.706270 | CGCATACAAGGGTATTGTTAAGAGAT | 59.294 | 38.462 | 0.00 | 0.00 | 38.14 | 2.75 |
202 | 203 | 6.046593 | CGCATACAAGGGTATTGTTAAGAGA | 58.953 | 40.000 | 0.00 | 0.00 | 38.14 | 3.10 |
203 | 204 | 5.277345 | GCGCATACAAGGGTATTGTTAAGAG | 60.277 | 44.000 | 0.30 | 0.00 | 38.14 | 2.85 |
204 | 205 | 4.573201 | GCGCATACAAGGGTATTGTTAAGA | 59.427 | 41.667 | 0.30 | 0.00 | 38.14 | 2.10 |
205 | 206 | 4.574828 | AGCGCATACAAGGGTATTGTTAAG | 59.425 | 41.667 | 11.47 | 0.00 | 38.14 | 1.85 |
206 | 207 | 4.334203 | CAGCGCATACAAGGGTATTGTTAA | 59.666 | 41.667 | 11.47 | 0.00 | 38.14 | 2.01 |
207 | 208 | 3.874543 | CAGCGCATACAAGGGTATTGTTA | 59.125 | 43.478 | 11.47 | 0.00 | 38.14 | 2.41 |
208 | 209 | 2.682856 | CAGCGCATACAAGGGTATTGTT | 59.317 | 45.455 | 11.47 | 0.00 | 38.14 | 2.83 |
209 | 210 | 2.093181 | TCAGCGCATACAAGGGTATTGT | 60.093 | 45.455 | 11.47 | 0.00 | 38.14 | 2.71 |
210 | 211 | 2.560504 | TCAGCGCATACAAGGGTATTG | 58.439 | 47.619 | 11.47 | 0.00 | 38.14 | 1.90 |
211 | 212 | 3.492102 | ATCAGCGCATACAAGGGTATT | 57.508 | 42.857 | 11.47 | 0.00 | 38.14 | 1.89 |
212 | 213 | 4.222810 | TCATATCAGCGCATACAAGGGTAT | 59.777 | 41.667 | 11.47 | 0.00 | 40.86 | 2.73 |
213 | 214 | 3.576550 | TCATATCAGCGCATACAAGGGTA | 59.423 | 43.478 | 11.47 | 0.00 | 0.00 | 3.69 |
214 | 215 | 2.368548 | TCATATCAGCGCATACAAGGGT | 59.631 | 45.455 | 11.47 | 0.00 | 0.00 | 4.34 |
215 | 216 | 3.044235 | TCATATCAGCGCATACAAGGG | 57.956 | 47.619 | 11.47 | 0.00 | 0.00 | 3.95 |
216 | 217 | 3.373130 | CCATCATATCAGCGCATACAAGG | 59.627 | 47.826 | 11.47 | 0.00 | 0.00 | 3.61 |
217 | 218 | 3.181513 | GCCATCATATCAGCGCATACAAG | 60.182 | 47.826 | 11.47 | 0.00 | 0.00 | 3.16 |
218 | 219 | 2.743664 | GCCATCATATCAGCGCATACAA | 59.256 | 45.455 | 11.47 | 0.00 | 0.00 | 2.41 |
219 | 220 | 2.027837 | AGCCATCATATCAGCGCATACA | 60.028 | 45.455 | 11.47 | 0.00 | 0.00 | 2.29 |
220 | 221 | 2.350804 | CAGCCATCATATCAGCGCATAC | 59.649 | 50.000 | 11.47 | 0.00 | 0.00 | 2.39 |
221 | 222 | 2.624636 | CAGCCATCATATCAGCGCATA | 58.375 | 47.619 | 11.47 | 0.00 | 0.00 | 3.14 |
222 | 223 | 1.450025 | CAGCCATCATATCAGCGCAT | 58.550 | 50.000 | 11.47 | 0.00 | 0.00 | 4.73 |
223 | 224 | 0.604511 | CCAGCCATCATATCAGCGCA | 60.605 | 55.000 | 11.47 | 0.00 | 0.00 | 6.09 |
224 | 225 | 0.604780 | ACCAGCCATCATATCAGCGC | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
225 | 226 | 1.888215 | AACCAGCCATCATATCAGCG | 58.112 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
226 | 227 | 2.746362 | GCTAACCAGCCATCATATCAGC | 59.254 | 50.000 | 0.00 | 0.00 | 42.37 | 4.26 |
254 | 255 | 9.537192 | TCGTCGTTAATGGATTAATGAATAGTT | 57.463 | 29.630 | 13.27 | 0.00 | 44.94 | 2.24 |
255 | 256 | 9.706691 | ATCGTCGTTAATGGATTAATGAATAGT | 57.293 | 29.630 | 13.27 | 1.94 | 44.94 | 2.12 |
259 | 260 | 9.315525 | TGTTATCGTCGTTAATGGATTAATGAA | 57.684 | 29.630 | 13.27 | 3.12 | 44.94 | 2.57 |
260 | 261 | 8.874744 | TGTTATCGTCGTTAATGGATTAATGA | 57.125 | 30.769 | 9.14 | 9.14 | 42.70 | 2.57 |
266 | 267 | 9.084164 | GCTTATATGTTATCGTCGTTAATGGAT | 57.916 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
267 | 268 | 7.271868 | CGCTTATATGTTATCGTCGTTAATGGA | 59.728 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
268 | 269 | 7.381079 | CGCTTATATGTTATCGTCGTTAATGG | 58.619 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
269 | 270 | 7.381079 | CCGCTTATATGTTATCGTCGTTAATG | 58.619 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
270 | 271 | 6.529125 | CCCGCTTATATGTTATCGTCGTTAAT | 59.471 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
271 | 272 | 5.858049 | CCCGCTTATATGTTATCGTCGTTAA | 59.142 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
272 | 273 | 5.181056 | TCCCGCTTATATGTTATCGTCGTTA | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
273 | 274 | 4.022935 | TCCCGCTTATATGTTATCGTCGTT | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
274 | 275 | 3.503363 | TCCCGCTTATATGTTATCGTCGT | 59.497 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
275 | 276 | 4.087510 | TCCCGCTTATATGTTATCGTCG | 57.912 | 45.455 | 0.00 | 0.00 | 0.00 | 5.12 |
276 | 277 | 6.588756 | TCATTTCCCGCTTATATGTTATCGTC | 59.411 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
277 | 278 | 6.460781 | TCATTTCCCGCTTATATGTTATCGT | 58.539 | 36.000 | 0.00 | 0.00 | 0.00 | 3.73 |
278 | 279 | 6.961359 | TCATTTCCCGCTTATATGTTATCG | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
308 | 309 | 4.148838 | CTCCCATTTATATTCCCCGCAAA | 58.851 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
318 | 319 | 7.696981 | ACAATCTCATCAGCTCCCATTTATAT | 58.303 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
325 | 326 | 3.265221 | AGAAACAATCTCATCAGCTCCCA | 59.735 | 43.478 | 0.00 | 0.00 | 30.46 | 4.37 |
330 | 331 | 9.286946 | CATTCTTTTAGAAACAATCTCATCAGC | 57.713 | 33.333 | 0.00 | 0.00 | 37.82 | 4.26 |
461 | 462 | 2.291741 | CCTTGGTCTCTTCAGTTTGCAC | 59.708 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
491 | 494 | 3.338249 | CGTTCATCCAGTTTCCAGTGAT | 58.662 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
492 | 495 | 2.766313 | CGTTCATCCAGTTTCCAGTGA | 58.234 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
498 | 501 | 1.134694 | GGCGCGTTCATCCAGTTTC | 59.865 | 57.895 | 8.43 | 0.00 | 0.00 | 2.78 |
530 | 533 | 2.899838 | GGCGTGCATATGGGCGAA | 60.900 | 61.111 | 4.56 | 0.00 | 36.28 | 4.70 |
548 | 551 | 2.163818 | TAGTTGAGGAAACGCACAGG | 57.836 | 50.000 | 0.00 | 0.00 | 44.04 | 4.00 |
630 | 1973 | 3.850098 | AACGAGCCAAGCCCTGTGG | 62.850 | 63.158 | 0.00 | 0.00 | 39.33 | 4.17 |
632 | 1975 | 0.605589 | GTAAACGAGCCAAGCCCTGT | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
855 | 2219 | 8.668353 | TCTTGATTTCTATACAAAGCATCACAC | 58.332 | 33.333 | 0.00 | 0.00 | 31.96 | 3.82 |
856 | 2220 | 8.791327 | TCTTGATTTCTATACAAAGCATCACA | 57.209 | 30.769 | 0.00 | 0.00 | 31.96 | 3.58 |
857 | 2221 | 9.102757 | TCTCTTGATTTCTATACAAAGCATCAC | 57.897 | 33.333 | 0.00 | 0.00 | 31.96 | 3.06 |
898 | 2339 | 4.864219 | TGAAAGCATCACACAGTATGGGAG | 60.864 | 45.833 | 0.00 | 0.00 | 46.52 | 4.30 |
1086 | 2539 | 1.384989 | GCGAGGATCTGAGACGGGAA | 61.385 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
1173 | 2626 | 2.798680 | CCGGTTAGAGATGAGTTCGTG | 58.201 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1174 | 2627 | 1.134560 | GCCGGTTAGAGATGAGTTCGT | 59.865 | 52.381 | 1.90 | 0.00 | 0.00 | 3.85 |
1198 | 2651 | 0.515127 | CTGCGCAACACAATACCGAA | 59.485 | 50.000 | 13.05 | 0.00 | 0.00 | 4.30 |
1327 | 2782 | 1.685820 | GGTGAGTCAGGAAAGGGGG | 59.314 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
1334 | 2789 | 1.112916 | TGCAGTTCGGTGAGTCAGGA | 61.113 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1343 | 2798 | 0.532862 | CAAGACACCTGCAGTTCGGT | 60.533 | 55.000 | 13.81 | 0.35 | 0.00 | 4.69 |
1349 | 2804 | 2.880268 | TCATCAAACAAGACACCTGCAG | 59.120 | 45.455 | 6.78 | 6.78 | 0.00 | 4.41 |
1360 | 2815 | 4.211584 | GCACATGCACATTTCATCAAACAA | 59.788 | 37.500 | 0.00 | 0.00 | 41.59 | 2.83 |
1458 | 2913 | 0.419865 | TCAGGTCCCCCAGAACCATA | 59.580 | 55.000 | 0.00 | 0.00 | 29.47 | 2.74 |
1469 | 2924 | 1.210722 | GATGTTCCTCCTTCAGGTCCC | 59.789 | 57.143 | 0.00 | 0.00 | 43.95 | 4.46 |
1525 | 2980 | 7.886629 | ATGATTAATCAGGCACATTTGTAGT | 57.113 | 32.000 | 21.97 | 0.00 | 40.64 | 2.73 |
1553 | 3008 | 4.130857 | GCATCGGTTGCGTTTCAC | 57.869 | 55.556 | 0.00 | 0.00 | 42.54 | 3.18 |
1610 | 3065 | 5.991606 | CAGTAGATTTGAGAACACACAAGGA | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1615 | 3070 | 5.233988 | AGAGCAGTAGATTTGAGAACACAC | 58.766 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
1668 | 3123 | 5.342259 | GCAAGTTTAACAAGCGAGTAAATGG | 59.658 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1790 | 3245 | 9.638176 | ATTGGAAGAAAGTGAGCTTTGATATAT | 57.362 | 29.630 | 0.00 | 0.00 | 44.25 | 0.86 |
1804 | 3259 | 5.774690 | TGCCACATAAAGATTGGAAGAAAGT | 59.225 | 36.000 | 0.00 | 0.00 | 31.39 | 2.66 |
1846 | 3301 | 0.464373 | ATCAGCATGGCCCAGTAACG | 60.464 | 55.000 | 0.00 | 0.00 | 36.16 | 3.18 |
1854 | 3309 | 3.464111 | AGCAAAAATATCAGCATGGCC | 57.536 | 42.857 | 0.00 | 0.00 | 36.16 | 5.36 |
1876 | 3377 | 5.983540 | TGGCAATTTCCTAAAAACACAAGT | 58.016 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1877 | 3378 | 5.466393 | CCTGGCAATTTCCTAAAAACACAAG | 59.534 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2014 | 3518 | 9.574516 | AAGAAGCCTAAATAAGAAGACTTTCAA | 57.425 | 29.630 | 0.00 | 0.00 | 37.53 | 2.69 |
2280 | 3784 | 4.377897 | AGTTAAATGCGGTATAGGAGCAC | 58.622 | 43.478 | 0.00 | 0.00 | 44.12 | 4.40 |
2293 | 3797 | 2.423538 | ACAGCGATTGGGAGTTAAATGC | 59.576 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
2310 | 3814 | 7.594015 | CAGCTGATATTCAATAAAATGGACAGC | 59.406 | 37.037 | 8.42 | 0.00 | 38.73 | 4.40 |
2356 | 3861 | 6.545504 | ACAATTAGACAACTCATGACACAC | 57.454 | 37.500 | 0.00 | 0.00 | 0.00 | 3.82 |
2725 | 4231 | 2.223203 | GCATGTGAAGTATGCTGCTGAC | 60.223 | 50.000 | 0.00 | 0.00 | 45.64 | 3.51 |
2786 | 4292 | 7.843490 | TTGCTGATAGAAAACTACATGGTAC | 57.157 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2788 | 4294 | 7.611467 | TCATTTGCTGATAGAAAACTACATGGT | 59.389 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2789 | 4295 | 7.988737 | TCATTTGCTGATAGAAAACTACATGG | 58.011 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
2796 | 4302 | 6.500684 | TGTCCTCATTTGCTGATAGAAAAC | 57.499 | 37.500 | 0.00 | 0.00 | 32.10 | 2.43 |
2861 | 4367 | 8.041323 | TCCTATGGAACTACAGAATTGAAAGTC | 58.959 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2867 | 4373 | 7.921786 | TGTTTCCTATGGAACTACAGAATTG | 57.078 | 36.000 | 0.00 | 0.00 | 41.87 | 2.32 |
2906 | 4412 | 3.071479 | GACTTTTCCAATACACTGCGGA | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
3389 | 4911 | 7.186268 | AGACCTTACTCTTAAGAGACCAGATT | 58.814 | 38.462 | 33.94 | 15.42 | 44.74 | 2.40 |
3432 | 4954 | 9.387123 | CATGTCTTTCTTAGTTCTTTTAGCAAC | 57.613 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
3765 | 5290 | 3.817647 | GACACCACTCTGAAGCTGAAAAT | 59.182 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3767 | 5292 | 2.170397 | TGACACCACTCTGAAGCTGAAA | 59.830 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4069 | 5645 | 3.845109 | ACTCATACCAACCCCCATTTT | 57.155 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
4191 | 5767 | 1.277579 | TAATCACCGTTAGTGCCCCA | 58.722 | 50.000 | 0.00 | 0.00 | 46.81 | 4.96 |
4225 | 5801 | 7.225784 | ACAACATGGAAATGCTATTAACACA | 57.774 | 32.000 | 0.00 | 0.00 | 0.00 | 3.72 |
4282 | 5858 | 7.786046 | TTGGACAGATACTACTCCAAAAGTA | 57.214 | 36.000 | 0.00 | 0.00 | 39.55 | 2.24 |
4447 | 6049 | 8.948631 | ACTTGATATACTGAACACGAAATGAT | 57.051 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
4627 | 6229 | 4.365368 | TGATCATGAAGGGAGGAGAGAAA | 58.635 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
4889 | 6491 | 0.762418 | TTCTCCCTTTTGAGTCCGCA | 59.238 | 50.000 | 0.00 | 0.00 | 33.93 | 5.69 |
5018 | 6632 | 2.148446 | ATAAGCAATGCCAGGCAGAA | 57.852 | 45.000 | 21.51 | 0.00 | 43.65 | 3.02 |
5021 | 6635 | 1.477700 | GTGAATAAGCAATGCCAGGCA | 59.522 | 47.619 | 18.99 | 18.99 | 44.86 | 4.75 |
5024 | 6638 | 4.177165 | TGTTGTGAATAAGCAATGCCAG | 57.823 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
5032 | 6646 | 4.952262 | TCTCTGCATGTTGTGAATAAGC | 57.048 | 40.909 | 0.00 | 0.00 | 0.00 | 3.09 |
5033 | 6647 | 9.447040 | CATTAATCTCTGCATGTTGTGAATAAG | 57.553 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
5044 | 6658 | 3.220110 | ACAGCCCATTAATCTCTGCATG | 58.780 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
5048 | 6662 | 3.565764 | TGGACAGCCCATTAATCTCTG | 57.434 | 47.619 | 6.59 | 6.59 | 40.82 | 3.35 |
5067 | 6681 | 3.577667 | ACACCATCATTCGCAAAATGTG | 58.422 | 40.909 | 8.26 | 6.57 | 0.00 | 3.21 |
5076 | 6690 | 5.808042 | ATCAAGAGAAACACCATCATTCG | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
5154 | 6769 | 3.788227 | TCAGCAAACACATAGGAACCT | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 3.50 |
5155 | 6770 | 3.821033 | AGTTCAGCAAACACATAGGAACC | 59.179 | 43.478 | 0.00 | 0.00 | 40.56 | 3.62 |
5156 | 6771 | 4.275936 | ACAGTTCAGCAAACACATAGGAAC | 59.724 | 41.667 | 5.00 | 0.00 | 40.56 | 3.62 |
5185 | 6801 | 6.347402 | CCATTACTACTTGAACCACTGAAACG | 60.347 | 42.308 | 0.00 | 0.00 | 0.00 | 3.60 |
5239 | 6858 | 1.272781 | GCTGCATCAGTCTACACGTC | 58.727 | 55.000 | 0.00 | 0.00 | 33.43 | 4.34 |
5243 | 6862 | 1.895131 | TCACTGCTGCATCAGTCTACA | 59.105 | 47.619 | 19.92 | 2.55 | 44.81 | 2.74 |
5303 | 6945 | 1.547372 | AGCAATTGATGAAGCACACCC | 59.453 | 47.619 | 10.34 | 0.00 | 0.00 | 4.61 |
5305 | 6947 | 1.990563 | GCAGCAATTGATGAAGCACAC | 59.009 | 47.619 | 27.03 | 3.73 | 32.25 | 3.82 |
5306 | 6948 | 1.401800 | CGCAGCAATTGATGAAGCACA | 60.402 | 47.619 | 27.03 | 0.00 | 32.25 | 4.57 |
5326 | 6977 | 1.063717 | ACATGTTCACATCCCCCATCC | 60.064 | 52.381 | 0.00 | 0.00 | 33.61 | 3.51 |
5330 | 6981 | 5.418676 | CAATTTTACATGTTCACATCCCCC | 58.581 | 41.667 | 2.30 | 0.00 | 33.61 | 5.40 |
5331 | 6982 | 4.869861 | GCAATTTTACATGTTCACATCCCC | 59.130 | 41.667 | 2.30 | 0.00 | 33.61 | 4.81 |
5374 | 7026 | 1.564207 | TCAGCAATGAAGCGATCTCG | 58.436 | 50.000 | 0.00 | 0.00 | 40.15 | 4.04 |
5406 | 7058 | 8.723942 | ATGAAGTGATAGATAAAACGAAAGCT | 57.276 | 30.769 | 0.00 | 0.00 | 0.00 | 3.74 |
5592 | 7253 | 0.868406 | GCTGGTTCAACTTGGACTCG | 59.132 | 55.000 | 0.07 | 0.00 | 0.00 | 4.18 |
5638 | 7299 | 4.077184 | TGGATCGACCCACGTGGC | 62.077 | 66.667 | 29.75 | 15.52 | 43.13 | 5.01 |
5639 | 7300 | 2.184322 | CTGGATCGACCCACGTGG | 59.816 | 66.667 | 28.26 | 28.26 | 43.13 | 4.94 |
5640 | 7301 | 2.184322 | CCTGGATCGACCCACGTG | 59.816 | 66.667 | 9.08 | 9.08 | 43.13 | 4.49 |
5641 | 7302 | 3.771160 | GCCTGGATCGACCCACGT | 61.771 | 66.667 | 0.00 | 0.00 | 43.13 | 4.49 |
5642 | 7303 | 3.770040 | TGCCTGGATCGACCCACG | 61.770 | 66.667 | 0.00 | 0.00 | 44.09 | 4.94 |
5643 | 7304 | 2.125106 | GTGCCTGGATCGACCCAC | 60.125 | 66.667 | 0.00 | 0.00 | 38.00 | 4.61 |
5644 | 7305 | 2.284625 | AGTGCCTGGATCGACCCA | 60.285 | 61.111 | 0.00 | 0.00 | 38.00 | 4.51 |
5716 | 7377 | 2.029666 | CCGGATGCCTCGATGGAC | 59.970 | 66.667 | 0.00 | 0.00 | 38.35 | 4.02 |
5723 | 7384 | 4.899239 | CACGCCTCCGGATGCCTC | 62.899 | 72.222 | 23.81 | 0.00 | 39.22 | 4.70 |
5746 | 7407 | 2.029964 | GCGATTCCCCGGCGAATA | 59.970 | 61.111 | 14.26 | 0.00 | 32.56 | 1.75 |
5801 | 7474 | 2.676342 | GCACGAATACTACCACCAAAGG | 59.324 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
5811 | 7484 | 2.057137 | ACCGGGTAGCACGAATACTA | 57.943 | 50.000 | 6.32 | 0.00 | 0.00 | 1.82 |
5828 | 7503 | 6.870439 | ACAGAACGAAATACCTTTGTACTACC | 59.130 | 38.462 | 0.00 | 0.00 | 30.83 | 3.18 |
5829 | 7504 | 7.880059 | ACAGAACGAAATACCTTTGTACTAC | 57.120 | 36.000 | 0.00 | 0.00 | 30.83 | 2.73 |
5830 | 7505 | 8.362639 | AGAACAGAACGAAATACCTTTGTACTA | 58.637 | 33.333 | 0.00 | 0.00 | 30.83 | 1.82 |
5831 | 7506 | 7.170998 | CAGAACAGAACGAAATACCTTTGTACT | 59.829 | 37.037 | 0.00 | 0.00 | 30.83 | 2.73 |
5902 | 7579 | 2.200899 | GCTCGATCCTCTCTTTGCTTC | 58.799 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
5903 | 7580 | 1.134551 | GGCTCGATCCTCTCTTTGCTT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
5904 | 7581 | 0.463620 | GGCTCGATCCTCTCTTTGCT | 59.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
5908 | 7585 | 1.415659 | CCATTGGCTCGATCCTCTCTT | 59.584 | 52.381 | 6.88 | 0.00 | 0.00 | 2.85 |
5922 | 7599 | 1.224592 | CCTCCTCCCGAACCATTGG | 59.775 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.